AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1043390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043390 MtrunA17_Chr6g0475951 98.701 77 1 0 1 77 1 77 1.39e-51 155
Msa1043390 MtrunA17_Chr7g0266661 100.000 76 0 0 1 76 1 76 5.03e-51 155
Msa1043390 MtrunA17_Chr1g0178381 100.000 76 0 0 1 76 1 76 5.03e-51 155
Msa1043390 MtrunA17_Chr3g0127481 100.000 76 0 0 1 76 1 76 5.03e-51 155
Msa1043390 MtrunA17_Chr8g0380181 100.000 76 0 0 1 76 1 76 1.30e-50 155
Msa1043390 MtrunA17_Chr5g0413361 100.000 76 0 0 1 76 1 76 1.69e-50 155
Msa1043390 MtrunA17_Chr4g0037241 100.000 76 0 0 1 76 1 76 4.65e-50 154
Msa1043390 MtrunA17_Chr4g0037241 62.162 74 28 0 3 76 79 152 2.65e-27 96.7
Msa1043390 MtrunA17_Chr5g0444101 100.000 76 0 0 1 76 1 76 4.65e-50 154
Msa1043390 MtrunA17_Chr5g0444101 62.162 74 28 0 3 76 79 152 2.65e-27 96.7
Msa1043390 MtrunA17_Chr7g0274921 98.701 77 1 0 1 77 155 231 1.15e-49 155
Msa1043390 MtrunA17_Chr7g0274921 100.000 76 0 0 1 76 3 78 5.16e-49 154
Msa1043390 MtrunA17_Chr7g0274921 100.000 76 0 0 1 76 79 154 5.16e-49 154
Msa1043390 MtrunA17_Chr6g0475961 100.000 76 0 0 1 76 4 79 1.20e-49 154
Msa1043390 MtrunA17_Chr6g0475961 100.000 76 0 0 1 76 80 155 1.20e-49 154
Msa1043390 MtrunA17_Chr6g0475961 100.000 37 0 0 1 37 156 192 2.54e-18 74.7
Msa1043390 MtrunA17_Chr1g0181441 100.000 76 0 0 1 76 1 76 7.33e-49 154
Msa1043390 MtrunA17_Chr1g0181441 100.000 76 0 0 1 76 77 152 7.33e-49 154
Msa1043390 MtrunA17_Chr1g0181441 100.000 76 0 0 1 76 153 228 7.33e-49 154
Msa1043390 MtrunA17_Chr4g0041751 98.684 76 1 0 1 76 77 152 1.67e-48 152
Msa1043390 MtrunA17_Chr4g0041751 98.684 76 1 0 1 76 1 76 2.45e-48 152
Msa1043390 MtrunA17_Chr4g0041751 69.737 76 23 0 1 76 153 228 3.88e-30 105
Msa1043390 MtrunA17_Chr4g0041701 100.000 77 0 0 1 77 457 533 1.69e-47 157
Msa1043390 MtrunA17_Chr4g0041701 100.000 76 0 0 1 76 1 76 2.51e-46 154
Msa1043390 MtrunA17_Chr4g0041701 100.000 76 0 0 1 76 77 152 2.51e-46 154
Msa1043390 MtrunA17_Chr4g0041701 100.000 76 0 0 1 76 153 228 2.51e-46 154
Msa1043390 MtrunA17_Chr4g0041701 100.000 76 0 0 1 76 229 304 2.51e-46 154
Msa1043390 MtrunA17_Chr4g0041701 100.000 76 0 0 1 76 305 380 2.51e-46 154
Msa1043390 MtrunA17_Chr4g0041701 100.000 76 0 0 1 76 381 456 2.51e-46 154
Msa1043390 MtrunA17_Chr4g0046801 98.701 77 1 0 1 77 384 460 1.81e-47 155
Msa1043390 MtrunA17_Chr4g0046801 100.000 76 0 0 1 76 4 79 7.95e-47 154
Msa1043390 MtrunA17_Chr4g0046801 100.000 76 0 0 1 76 80 155 7.95e-47 154
Msa1043390 MtrunA17_Chr4g0046801 100.000 76 0 0 1 76 156 231 7.95e-47 154
Msa1043390 MtrunA17_Chr4g0046801 100.000 76 0 0 1 76 232 307 7.95e-47 154
Msa1043390 MtrunA17_Chr4g0046801 100.000 76 0 0 1 76 308 383 7.95e-47 154
Msa1043390 MtrunA17_Chr8g0374171 97.368 76 2 0 1 76 74 149 1.96e-47 148
Msa1043390 MtrunA17_Chr8g0374171 94.118 34 2 0 43 76 40 73 3.54e-16 68.6
Msa1043390 MtrunA17_Chr4g0041641 98.701 77 1 0 1 77 385 461 1.96e-47 155
Msa1043390 MtrunA17_Chr4g0041641 100.000 76 0 0 1 76 5 80 8.52e-47 154
Msa1043390 MtrunA17_Chr4g0041641 100.000 76 0 0 1 76 81 156 8.52e-47 154
Msa1043390 MtrunA17_Chr4g0041641 100.000 76 0 0 1 76 157 232 8.52e-47 154
Msa1043390 MtrunA17_Chr4g0041641 100.000 76 0 0 1 76 233 308 8.52e-47 154
Msa1043390 MtrunA17_Chr4g0041641 100.000 76 0 0 1 76 309 384 8.52e-47 154
Msa1043390 MtrunA17_Chr8g0377821 100.000 76 0 0 1 76 9 84 2.72e-47 154
Msa1043390 MtrunA17_Chr8g0377821 100.000 76 0 0 1 76 85 160 2.72e-47 154
Msa1043390 MtrunA17_Chr8g0377821 100.000 76 0 0 1 76 161 236 2.72e-47 154
Msa1043390 MtrunA17_Chr8g0377821 100.000 76 0 0 1 76 237 312 2.72e-47 154
Msa1043390 MtrunA17_Chr8g0377821 100.000 76 0 0 1 76 313 388 2.72e-47 154
Msa1043390 MtrunA17_Chr8g0342711 98.701 77 1 0 1 77 460 536 5.55e-47 156
Msa1043390 MtrunA17_Chr8g0342711 100.000 76 0 0 1 76 4 79 2.38e-46 154
Msa1043390 MtrunA17_Chr8g0342711 100.000 76 0 0 1 76 80 155 2.38e-46 154
Msa1043390 MtrunA17_Chr8g0342711 100.000 76 0 0 1 76 156 231 2.38e-46 154
Msa1043390 MtrunA17_Chr8g0342711 100.000 76 0 0 1 76 232 307 2.38e-46 154
Msa1043390 MtrunA17_Chr8g0342711 100.000 76 0 0 1 76 308 383 2.38e-46 154
Msa1043390 MtrunA17_Chr8g0342711 100.000 76 0 0 1 76 384 459 2.38e-46 154
Msa1043390 MtrunA17_Chr4g0048591 98.701 77 1 0 1 77 460 536 6.03e-47 155
Msa1043390 MtrunA17_Chr4g0048591 100.000 76 0 0 1 76 4 79 2.59e-46 154
Msa1043390 MtrunA17_Chr4g0048591 100.000 76 0 0 1 76 80 155 2.59e-46 154
Msa1043390 MtrunA17_Chr4g0048591 100.000 76 0 0 1 76 156 231 2.59e-46 154
Msa1043390 MtrunA17_Chr4g0048591 100.000 76 0 0 1 76 232 307 2.59e-46 154
Msa1043390 MtrunA17_Chr4g0048591 100.000 76 0 0 1 76 384 459 2.59e-46 154
Msa1043390 MtrunA17_Chr4g0048591 97.368 76 2 0 1 76 308 383 1.01e-44 150
Msa1043390 MtrunA17_Chr4g0046831 98.701 77 1 0 1 77 520 596 1.32e-46 155
Msa1043390 MtrunA17_Chr4g0046831 100.000 76 0 0 1 76 80 155 5.46e-46 154
Msa1043390 MtrunA17_Chr4g0046831 100.000 76 0 0 1 76 156 231 5.46e-46 154
Msa1043390 MtrunA17_Chr4g0046831 100.000 76 0 0 1 76 232 307 5.46e-46 154
Msa1043390 MtrunA17_Chr4g0046831 100.000 76 0 0 1 76 368 443 5.46e-46 154
Msa1043390 MtrunA17_Chr4g0046831 100.000 76 0 0 1 76 444 519 5.46e-46 154
Msa1043390 MtrunA17_Chr4g0046831 98.684 76 1 0 1 76 4 79 9.38e-45 150
Msa1043390 MtrunA17_Chr4g0046831 78.947 76 0 1 1 76 308 367 2.63e-30 111
Msa1043390 MtrunA17_Chr1g0169371 72.000 75 21 0 1 75 215 289 9.40e-30 106
Msa1043390 MtrunA17_Chr5g0433721 69.737 76 22 1 1 75 194 269 8.12e-29 103
Msa1043390 MtrunA17_Chr5g0433631 69.863 73 22 0 1 73 266 338 3.28e-28 103
Msa1043390 MtrunA17_Chr5g0428191 69.333 75 23 0 1 75 241 315 3.90e-27 100
Msa1043390 MtrunA17_Chr5g0424981 60.000 75 30 0 1 75 2 76 2.89e-26 91.7
Msa1043390 MtrunA17_Chr8g0374161 100.000 44 0 0 1 44 9 52 1.13e-25 89.4
Msa1043390 MtrunA17_Chr5g0433681 58.974 78 31 1 1 77 1 78 1.02e-24 87.8
Msa1043390 MtrunA17_Chr5g0433521 61.333 75 29 0 1 75 240 314 1.82e-24 92.8
Msa1043390 MtrunA17_Chr5g0433661 65.333 75 26 0 1 75 278 352 2.56e-24 93.2
Msa1043390 MtrunA17_Chr5g0433411 64.384 73 26 0 1 73 267 339 2.56e-24 92.8
Msa1043390 MtrunA17_Chr2g0298951 61.333 75 29 0 1 75 236 310 7.67e-24 91.3
Msa1043390 MtrunA17_Chr2g0298941 60.000 75 30 0 1 75 177 251 3.82e-23 88.2
Msa1043390 MtrunA17_Chr7g0259431 58.667 75 31 0 1 75 223 297 5.44e-23 88.6
Msa1043390 MtrunA17_Chr1g0169401 60.000 70 28 0 7 76 2 71 1.55e-22 82.0
Msa1043390 MtrunA17_Chr4g0003111 53.333 75 35 0 1 75 4 78 3.17e-21 79.0
Msa1043390 MtrunA17_Chr5g0433531 57.333 75 31 1 1 74 244 318 1.11e-20 82.8
Msa1043390 MtrunA17_Chr7g0223111 60.526 76 29 1 1 75 267 342 6.92e-20 80.9
Msa1043390 MtrunA17_Chr5g0433701 58.824 68 27 1 1 67 1 68 1.05e-19 75.5
Msa1043390 MtrunA17_Chr5g0424971 53.333 75 35 0 1 75 252 326 1.21e-18 77.4
Msa1043390 MtrunA17_Chr5g0433391 48.684 76 38 1 1 75 8 83 1.60e-16 67.4
Msa1043390 MtrunA17_Chr5g0433711 58.333 60 25 0 15 74 4 63 4.88e-16 65.5
Msa1043390 MtrunA17_Chr5g0433381 50.649 77 36 2 1 75 9 85 8.87e-16 65.5
Msa1043390 MtrunA17_Chr4g0041621 78.788 33 7 0 44 76 11 43 3.04e-12 55.8
Msa1043390 MtrunA17_Chr4g0075761 34.667 75 48 1 1 74 80 154 7.92e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043390 AT2G36170.1 100.000 76 0 0 1 76 1 76 7.50e-51 155
Msa1043390 AT3G52590.1 100.000 76 0 0 1 76 1 76 7.50e-51 155
Msa1043390 AT4G05320.7 98.701 77 1 0 1 77 77 153 1.92e-50 155
Msa1043390 AT4G05320.7 100.000 76 0 0 1 76 1 76 8.63e-50 154
Msa1043390 AT4G05050.4 98.701 77 1 0 1 77 77 153 1.92e-50 155
Msa1043390 AT4G05050.4 100.000 76 0 0 1 76 1 76 8.63e-50 154
Msa1043390 AT1G23410.1 100.000 76 0 0 1 76 1 76 2.23e-50 155
Msa1043390 AT2G47110.2 100.000 76 0 0 1 76 1 76 2.25e-50 155
Msa1043390 AT2G47110.1 100.000 76 0 0 1 76 1 76 2.25e-50 155
Msa1043390 AT3G62250.1 100.000 76 0 0 1 76 1 76 2.43e-50 155
Msa1043390 AT2G35635.1 100.000 76 0 0 1 76 1 76 8.71e-50 154
Msa1043390 AT2G35635.1 62.162 74 28 0 3 76 79 152 1.31e-26 95.1
Msa1043390 AT1G31340.1 100.000 76 0 0 1 76 1 76 1.31e-49 153
Msa1043390 AT1G31340.1 62.667 75 28 0 3 77 79 153 2.69e-28 99.8
Msa1043390 AT4G02890.2 98.701 77 1 0 1 77 153 229 1.69e-49 155
Msa1043390 AT4G02890.2 100.000 76 0 0 1 76 1 76 7.59e-49 154
Msa1043390 AT4G02890.2 100.000 76 0 0 1 76 77 152 7.59e-49 154
Msa1043390 AT4G02890.1 98.701 77 1 0 1 77 153 229 1.69e-49 155
Msa1043390 AT4G02890.1 100.000 76 0 0 1 76 1 76 7.59e-49 154
Msa1043390 AT4G02890.1 100.000 76 0 0 1 76 77 152 7.59e-49 154
Msa1043390 AT4G05050.2 98.701 77 1 0 1 77 153 229 1.69e-49 155
Msa1043390 AT4G05050.2 100.000 76 0 0 1 76 1 76 7.59e-49 154
Msa1043390 AT4G05050.2 100.000 76 0 0 1 76 77 152 7.59e-49 154
Msa1043390 AT4G05050.1 98.701 77 1 0 1 77 153 229 1.69e-49 155
Msa1043390 AT4G05050.1 100.000 76 0 0 1 76 1 76 7.59e-49 154
Msa1043390 AT4G05050.1 100.000 76 0 0 1 76 77 152 7.59e-49 154
Msa1043390 AT4G05050.3 98.701 77 1 0 1 77 153 229 1.69e-49 155
Msa1043390 AT4G05050.3 100.000 76 0 0 1 76 1 76 7.59e-49 154
Msa1043390 AT4G05050.3 100.000 76 0 0 1 76 77 152 7.59e-49 154
Msa1043390 AT4G05320.5 98.701 77 1 0 1 77 229 305 1.13e-48 155
Msa1043390 AT4G05320.5 100.000 76 0 0 1 76 1 76 5.06e-48 154
Msa1043390 AT4G05320.5 100.000 76 0 0 1 76 77 152 5.06e-48 154
Msa1043390 AT4G05320.5 100.000 76 0 0 1 76 153 228 5.06e-48 154
Msa1043390 AT4G05320.8 98.701 77 1 0 1 77 229 305 1.13e-48 155
Msa1043390 AT4G05320.8 100.000 76 0 0 1 76 1 76 5.06e-48 154
Msa1043390 AT4G05320.8 100.000 76 0 0 1 76 77 152 5.06e-48 154
Msa1043390 AT4G05320.8 100.000 76 0 0 1 76 153 228 5.06e-48 154
Msa1043390 AT4G02890.3 98.701 77 1 0 1 77 229 305 1.13e-48 155
Msa1043390 AT4G02890.3 100.000 76 0 0 1 76 1 76 5.06e-48 154
Msa1043390 AT4G02890.3 100.000 76 0 0 1 76 77 152 5.06e-48 154
Msa1043390 AT4G02890.3 100.000 76 0 0 1 76 153 228 5.06e-48 154
Msa1043390 AT4G02890.4 98.701 77 1 0 1 77 229 305 1.13e-48 155
Msa1043390 AT4G02890.4 100.000 76 0 0 1 76 1 76 5.06e-48 154
Msa1043390 AT4G02890.4 100.000 76 0 0 1 76 77 152 5.06e-48 154
Msa1043390 AT4G02890.4 100.000 76 0 0 1 76 153 228 5.06e-48 154
Msa1043390 AT1G55060.1 98.684 76 1 0 1 76 77 152 2.42e-48 152
Msa1043390 AT1G55060.1 97.368 76 2 0 1 76 153 228 1.77e-46 148
Msa1043390 AT1G55060.1 86.842 76 10 0 1 76 1 76 2.85e-42 137
Msa1043390 AT5G03240.3 100.000 76 0 0 1 76 1 76 4.51e-48 154
Msa1043390 AT5G03240.3 100.000 76 0 0 1 76 77 152 4.51e-48 154
Msa1043390 AT5G03240.3 100.000 76 0 0 1 76 153 228 4.51e-48 154
Msa1043390 AT5G03240.3 100.000 76 0 0 1 76 229 304 4.51e-48 154
Msa1043390 AT5G03240.2 100.000 76 0 0 1 76 1 76 4.51e-48 154
Msa1043390 AT5G03240.2 100.000 76 0 0 1 76 77 152 4.51e-48 154
Msa1043390 AT5G03240.2 100.000 76 0 0 1 76 153 228 4.51e-48 154
Msa1043390 AT5G03240.2 100.000 76 0 0 1 76 229 304 4.51e-48 154
Msa1043390 AT5G03240.1 100.000 76 0 0 1 76 1 76 4.51e-48 154
Msa1043390 AT5G03240.1 100.000 76 0 0 1 76 77 152 4.51e-48 154
Msa1043390 AT5G03240.1 100.000 76 0 0 1 76 153 228 4.51e-48 154
Msa1043390 AT5G03240.1 100.000 76 0 0 1 76 229 304 4.51e-48 154
Msa1043390 AT5G20620.2 100.000 76 0 0 1 76 1 76 4.51e-48 154
Msa1043390 AT5G20620.2 100.000 76 0 0 1 76 77 152 4.51e-48 154
Msa1043390 AT5G20620.2 100.000 76 0 0 1 76 153 228 4.51e-48 154
Msa1043390 AT5G20620.2 100.000 76 0 0 1 76 229 304 4.51e-48 154
Msa1043390 AT4G05320.1 98.701 77 1 0 1 77 305 381 6.11e-48 155
Msa1043390 AT4G05320.1 100.000 76 0 0 1 76 1 76 2.70e-47 154
Msa1043390 AT4G05320.1 100.000 76 0 0 1 76 77 152 2.70e-47 154
Msa1043390 AT4G05320.1 100.000 76 0 0 1 76 153 228 2.70e-47 154
Msa1043390 AT4G05320.1 100.000 76 0 0 1 76 229 304 2.70e-47 154
Msa1043390 AT4G05320.6 98.701 77 1 0 1 77 305 381 6.11e-48 155
Msa1043390 AT4G05320.6 100.000 76 0 0 1 76 1 76 2.70e-47 154
Msa1043390 AT4G05320.6 100.000 76 0 0 1 76 77 152 2.70e-47 154
Msa1043390 AT4G05320.6 100.000 76 0 0 1 76 153 228 2.70e-47 154
Msa1043390 AT4G05320.6 100.000 76 0 0 1 76 229 304 2.70e-47 154
Msa1043390 AT4G05320.3 98.701 77 1 0 1 77 305 381 6.11e-48 155
Msa1043390 AT4G05320.3 100.000 76 0 0 1 76 1 76 2.70e-47 154
Msa1043390 AT4G05320.3 100.000 76 0 0 1 76 77 152 2.70e-47 154
Msa1043390 AT4G05320.3 100.000 76 0 0 1 76 153 228 2.70e-47 154
Msa1043390 AT4G05320.3 100.000 76 0 0 1 76 229 304 2.70e-47 154
Msa1043390 AT1G65350.1 100.000 76 0 0 1 76 1 76 8.77e-48 154
Msa1043390 AT1G65350.1 98.684 76 1 0 1 76 152 227 1.22e-46 150
Msa1043390 AT1G65350.1 98.684 76 0 1 1 76 77 151 9.06e-45 146
Msa1043390 AT1G65350.1 80.000 90 4 1 1 76 228 317 5.22e-39 131
Msa1043390 AT4G05320.2 98.701 77 1 0 1 77 381 457 2.45e-47 155
Msa1043390 AT4G05320.2 100.000 76 0 0 1 76 1 76 1.06e-46 154
Msa1043390 AT4G05320.2 100.000 76 0 0 1 76 77 152 1.06e-46 154
Msa1043390 AT4G05320.2 100.000 76 0 0 1 76 153 228 1.06e-46 154
Msa1043390 AT4G05320.2 100.000 76 0 0 1 76 229 304 1.06e-46 154
Msa1043390 AT4G05320.2 100.000 76 0 0 1 76 305 380 1.06e-46 154
Msa1043390 AT4G05320.4 98.701 77 1 0 1 77 381 457 2.45e-47 155
Msa1043390 AT4G05320.4 100.000 76 0 0 1 76 1 76 1.06e-46 154
Msa1043390 AT4G05320.4 100.000 76 0 0 1 76 77 152 1.06e-46 154
Msa1043390 AT4G05320.4 100.000 76 0 0 1 76 153 228 1.06e-46 154
Msa1043390 AT4G05320.4 100.000 76 0 0 1 76 229 304 1.06e-46 154
Msa1043390 AT4G05320.4 100.000 76 0 0 1 76 305 380 1.06e-46 154
Msa1043390 AT5G20620.1 100.000 76 0 0 1 76 1 76 2.51e-47 154
Msa1043390 AT5G20620.1 100.000 76 0 0 1 76 77 152 2.51e-47 154
Msa1043390 AT5G20620.1 100.000 76 0 0 1 76 153 228 2.51e-47 154
Msa1043390 AT5G20620.1 100.000 76 0 0 1 76 229 304 2.51e-47 154
Msa1043390 AT5G20620.1 100.000 76 0 0 1 76 305 380 2.51e-47 154
Msa1043390 AT5G37640.1 97.368 76 2 0 1 76 79 154 3.67e-47 152
Msa1043390 AT5G37640.1 93.421 76 5 0 1 76 155 230 1.34e-43 143
Msa1043390 AT5G37640.1 92.208 77 5 1 1 76 231 307 5.73e-41 136
Msa1043390 AT5G37640.1 78.947 76 16 0 1 76 3 78 2.63e-34 119
Msa1043390 AT3G09790.2 93.421 76 5 0 1 76 79 154 1.12e-40 140
Msa1043390 AT3G09790.2 85.526 76 11 0 1 76 3 78 5.08e-37 130
Msa1043390 AT3G09790.2 79.730 74 15 0 1 74 552 625 1.83e-31 115
Msa1043390 AT3G09790.2 71.053 76 22 0 1 76 393 468 7.72e-29 107
Msa1043390 AT3G09790.2 76.712 73 15 1 1 71 319 391 5.36e-28 105
Msa1043390 AT3G09790.2 70.370 81 19 1 1 76 238 318 1.12e-27 104
Msa1043390 AT3G09790.2 67.073 82 20 2 1 75 155 236 3.47e-27 102
Msa1043390 AT3G09790.2 66.265 83 21 1 1 76 469 551 7.51e-26 99.0
Msa1043390 AT3G09790.1 93.421 76 5 0 1 76 79 154 1.12e-40 140
Msa1043390 AT3G09790.1 85.526 76 11 0 1 76 3 78 5.08e-37 130
Msa1043390 AT3G09790.1 79.730 74 15 0 1 74 552 625 1.83e-31 115
Msa1043390 AT3G09790.1 71.053 76 22 0 1 76 393 468 7.72e-29 107
Msa1043390 AT3G09790.1 76.712 73 15 1 1 71 319 391 5.36e-28 105
Msa1043390 AT3G09790.1 70.370 81 19 1 1 76 238 318 1.12e-27 104
Msa1043390 AT3G09790.1 67.073 82 20 2 1 75 155 236 3.47e-27 102
Msa1043390 AT3G09790.1 66.265 83 21 1 1 76 469 551 7.51e-26 99.0
Msa1043390 AT1G53930.1 75.342 73 18 0 1 73 86 158 7.36e-34 113
Msa1043390 AT1G53950.1 60.000 75 30 0 1 75 69 143 3.61e-26 94.0
Msa1043390 AT1G11980.1 55.263 76 34 0 1 76 1 76 3.60e-25 89.4
Msa1043390 AT1G53945.1 46.269 67 36 0 1 67 46 112 1.03e-13 61.2
Msa1043390 AT4G12570.1 38.667 75 45 1 1 74 95 169 9.21e-13 62.0
Msa1043390 AT5G42220.2 38.889 72 44 0 1 72 24 95 3.21e-12 60.5
Msa1043390 AT5G42220.1 38.889 72 44 0 1 72 24 95 3.21e-12 60.5

Find 21 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGTGAAGACACTTAC+TGG 0.340523 7_2:+1595144 Msa1043390:CDS
AAAATAAGCCTTTGCTGGTC+TGG 0.369394 7_2:-1595249 None:intergenic
TACTGGGAAGACTATTACCT+TGG 0.388796 7_2:+1595161 Msa1043390:CDS
GTTGGAGGATGGTCGTACTT+TGG 0.490504 7_2:+1595284 Msa1043390:CDS
TGGGAAGACTATTACCTTGG+AGG 0.507917 7_2:+1595164 Msa1043390:CDS
TAACGTGAAAGCGAAGATAC+AGG 0.523093 7_2:+1595209 Msa1043390:CDS
GCTGGCAAGCAGTTGGAGGA+TGG 0.535241 7_2:+1595273 Msa1043390:CDS
GAAAGCGAAGATACAGGATA+AGG 0.552277 7_2:+1595215 Msa1043390:CDS
ATAAGCCTTTGCTGGTCTGG+TGG 0.552962 7_2:-1595246 None:intergenic
GGAGGCGAAGAACAAGATGC+AGG 0.555285 7_2:-1595335 None:intergenic
AGCGAAGATACAGGATAAGG+AGG 0.570060 7_2:+1595218 Msa1043390:CDS
GAAGACTATTACCTTGGAGG+TGG 0.573223 7_2:+1595167 Msa1043390:CDS
ATCAGAGCTTTCCACCTCCA+AGG 0.576914 7_2:-1595178 None:intergenic
TATTTGTGAAGACACTTACT+GGG 0.579572 7_2:+1595145 Msa1043390:CDS
CTTGTTCTTCGCCTCCGTGG+TGG 0.614501 7_2:+1595342 Msa1043390:CDS
GTATTCCACCAGACCAGCAA+AGG 0.618403 7_2:+1595241 Msa1043390:CDS
GCGAAGATACAGGATAAGGA+GGG 0.623735 7_2:+1595219 Msa1043390:CDS
CATCTTGTTCTTCGCCTCCG+TGG 0.627545 7_2:+1595339 Msa1043390:CDS
GAGGCGAAGAACAAGATGCA+GGG 0.658046 7_2:-1595334 None:intergenic
GACAAACTTAGTAGCCACCA+CGG 0.691904 7_2:-1595356 None:intergenic
AAACTTAGTAGCCACCACGG+AGG 0.802224 7_2:-1595353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATATTTGTGAAGACACTTAC+TGG + chr7_2:1595144-1595163 Msa1043390:CDS 30.0%
TATTTGTGAAGACACTTACT+GGG + chr7_2:1595145-1595164 Msa1043390:CDS 30.0%
TACTGGGAAGACTATTACCT+TGG + chr7_2:1595161-1595180 Msa1043390:CDS 40.0%
TAACGTGAAAGCGAAGATAC+AGG + chr7_2:1595209-1595228 Msa1043390:CDS 40.0%
GAAAGCGAAGATACAGGATA+AGG + chr7_2:1595215-1595234 Msa1043390:CDS 40.0%
AAAATAAGCCTTTGCTGGTC+TGG - chr7_2:1595252-1595271 None:intergenic 40.0%
CAGCAAAAATAAGCCTTTGC+TGG - chr7_2:1595257-1595276 None:intergenic 40.0%
!!! CAGCAAAGGCTTATTTTTGC+TGG + chr7_2:1595255-1595274 Msa1043390:CDS 40.0%
!! TATTTTTGCTGGCAAGCAGT+TGG + chr7_2:1595266-1595285 Msa1043390:CDS 40.0%
TGGGAAGACTATTACCTTGG+AGG + chr7_2:1595164-1595183 Msa1043390:CDS 45.0%
GAAGACTATTACCTTGGAGG+TGG + chr7_2:1595167-1595186 Msa1043390:CDS 45.0%
AGCGAAGATACAGGATAAGG+AGG + chr7_2:1595218-1595237 Msa1043390:CDS 45.0%
GCGAAGATACAGGATAAGGA+GGG + chr7_2:1595219-1595238 Msa1043390:CDS 45.0%
ATCAGAGCTTTCCACCTCCA+AGG - chr7_2:1595181-1595200 None:intergenic 50.0%
GTATTCCACCAGACCAGCAA+AGG + chr7_2:1595241-1595260 Msa1043390:CDS 50.0%
! ATAAGCCTTTGCTGGTCTGG+TGG - chr7_2:1595249-1595268 None:intergenic 50.0%
! TTTTGCTGGCAAGCAGTTGG+AGG + chr7_2:1595269-1595288 Msa1043390:CDS 50.0%
GTTGGAGGATGGTCGTACTT+TGG + chr7_2:1595284-1595303 Msa1043390:CDS 50.0%
GAGGCGAAGAACAAGATGCA+GGG - chr7_2:1595337-1595356 None:intergenic 50.0%
GGAGGCGAAGAACAAGATGC+AGG - chr7_2:1595338-1595357 None:intergenic 55.0%
CATCTTGTTCTTCGCCTCCG+TGG + chr7_2:1595339-1595358 Msa1043390:CDS 55.0%
GCTGGCAAGCAGTTGGAGGA+TGG + chr7_2:1595273-1595292 Msa1043390:CDS 60.0%
CTTGTTCTTCGCCTCCGTGG+TGG + chr7_2:1595342-1595361 Msa1043390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 1595138 1595371 1595138 ID=Msa1043390;Name=Msa1043390
chr7_2 mRNA 1595138 1595371 1595138 ID=Msa1043390-mRNA-1;Parent=Msa1043390;Name=Msa1043390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|77
chr7_2 exon 1595138 1595371 1595138 ID=Msa1043390-mRNA-1:exon:268;Parent=Msa1043390-mRNA-1
chr7_2 CDS 1595138 1595371 1595138 ID=Msa1043390-mRNA-1:cds;Parent=Msa1043390-mRNA-1
Gene Sequence

>Msa1043390

ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACGATTGATAACGTGAAAGCGAAGATACAGGATAAGGAGGGTATTCCACCAGACCAGCAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAATATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGCCTCCGTGGTGGCTACTAA

Protein sequence

>Msa1043390

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY*