AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0150800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150800 MtrunA17_Chr1g0158981 95.714 280 10 1 1 280 1 278 0.0 548
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150800 AT5G53280.1 51.648 273 117 6 12 280 11 272 3.07e-86 259

Find 80 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTCACATATGGATATT+AGG 0.166622 1_4:+12474209 None:intergenic
CTAATCATGAACATTCATTT+AGG 0.181348 1_4:-12474925 Msa0150800:CDS
AATGACACCAAACTCCATTT+TGG 0.195144 1_4:+12474595 None:intergenic
AAACTCTCATCTGCACATTT+TGG 0.229219 1_4:+12475112 None:intergenic
TTTAGTGAGTTTGCCCAAAA+TGG 0.242298 1_4:-12474609 Msa0150800:three_prime_UTR
ATCTCTTGGGTTGGATCATA+TGG 0.284716 1_4:-12475017 Msa0150800:CDS
AAGCGATTCTCGAGAAAATC+TGG 0.314078 1_4:-12479063 Msa0150800:CDS
TAATCATGAACATTCATTTA+GGG 0.333045 1_4:-12474924 Msa0150800:CDS
GAAGGGAGAATAGGCTAAAA+TGG 0.339471 1_4:-12474644 Msa0150800:three_prime_UTR
AAATTCACATATGGATATTA+GGG 0.343684 1_4:+12474210 None:intergenic
TGCATATGCTTATACTTAGT+TGG 0.350080 1_4:-12474467 Msa0150800:three_prime_UTR
TGTCTGTCGATTCACACTTC+TGG 0.364505 1_4:-12474490 Msa0150800:three_prime_UTR
AGATGCTGCGATTGCACGTC+TGG 0.365548 1_4:-12475272 Msa0150800:CDS
CGCGTTTCGATGAAATGAAA+TGG 0.384371 1_4:-12479108 Msa0150800:exon
GATATTAGGGAATCATTTGT+TGG 0.387583 1_4:+12474223 None:intergenic
TCTTCGTCCAGTGCCCATTC+TGG 0.392364 1_4:-12474845 Msa0150800:CDS
ATTAGACCTCTTCCCTTTCT+CGG 0.403823 1_4:+12475084 None:intergenic
ATGCAACCAGTGCAAACTTT+CGG 0.413702 1_4:+12474550 None:intergenic
GAGAAAATGAGATCGTGAAA+TGG 0.415279 1_4:+12479006 None:intergenic
ATTAACACAAAATTCACATA+TGG 0.416515 1_4:+12474201 None:intergenic
TACAAAGGAGGTCTGAAATC+TGG 0.423596 1_4:-12474673 Msa0150800:three_prime_UTR
TCATTTCACCACATTGATAG+AGG 0.444384 1_4:+12474784 None:intergenic
AACATCCAAGTTACCAGAAT+GGG 0.447938 1_4:+12474832 None:intergenic
TGCTTTGCTTCAGTTGCAGC+AGG 0.453364 1_4:-12474951 Msa0150800:CDS
TGTGAAGAAATCTCTTGGGT+TGG 0.467925 1_4:-12475026 Msa0150800:CDS
AGTTTGCCCAAAATGGAGTT+TGG 0.468174 1_4:-12474602 Msa0150800:three_prime_UTR
CATTTGTTGGATTAATAAAG+AGG 0.472326 1_4:+12474236 None:intergenic
GATCATATGGGCGGAATAGT+AGG 0.483113 1_4:-12475004 Msa0150800:CDS
CAGTGCCCATTCTGGTAACT+TGG 0.483764 1_4:-12474837 Msa0150800:CDS
TGGTCTGGTGAAGGGAGAAT+AGG 0.490970 1_4:-12474653 Msa0150800:three_prime_UTR
AACACGCTGCTGAGTCTGAA+TGG 0.492537 1_4:+12475300 None:intergenic
AGGAGGTCTGAAATCTGGTC+TGG 0.503185 1_4:-12474668 Msa0150800:three_prime_UTR
TATGAGAAGAACAGCTCACT+TGG 0.505741 1_4:-12474873 Msa0150800:CDS
AATGAAATGGAACACGCAAA+TGG 0.509169 1_4:-12479095 Msa0150800:CDS
AATAGTAGGAAATGCTGCTC+TGG 0.514034 1_4:-12474990 Msa0150800:CDS
GGTAATAACGGTAACGGTAA+CGG 0.519732 1_4:-12478911 Msa0150800:CDS
CACAAAAGATTCTACTAAGT+GGG 0.524552 1_4:+12474346 None:intergenic
TGATAACGCGTGAGAGATGT+AGG 0.527246 1_4:-12474516 Msa0150800:three_prime_UTR
ACTTGTTCTTGCAATGAGAC+TGG 0.528222 1_4:-12475239 Msa0150800:CDS
TTTCATCTTGATTACAAAGG+AGG 0.529591 1_4:-12474685 Msa0150800:three_prime_UTR
TCACAAAAGATTCTACTAAG+TGG 0.534864 1_4:+12474345 None:intergenic
TGAGGGTTTGCTTGATGACA+AGG 0.537252 1_4:+12479189 None:intergenic
TAAACTAAAGCACACAAGAA+AGG 0.538645 1_4:+12474416 None:intergenic
CCGTTACCGTTATTACCCTC+CGG 0.542161 1_4:+12478917 None:intergenic
TCACATGAAAATACTCGAGC+TGG 0.544030 1_4:+12478780 None:intergenic
AAACATCCAAGTTACCAGAA+TGG 0.546101 1_4:+12474831 None:intergenic
TCTGAAATCTGGTCTGGTGA+AGG 0.550178 1_4:-12474662 Msa0150800:three_prime_UTR
TTGCCGCCGAAAGTTTGCAC+TGG 0.552787 1_4:-12474556 Msa0150800:three_prime_UTR
CTGAAATCTGGTCTGGTGAA+GGG 0.553288 1_4:-12474661 Msa0150800:three_prime_UTR
TCTCTTGGGTTGGATCATAT+GGG 0.556457 1_4:-12475016 Msa0150800:CDS
AAGACTCTTCGCTTCATGAA+CGG 0.561836 1_4:+12478838 None:intergenic
ACGACACCGGAGGGTAATAA+CGG 0.566312 1_4:-12478923 Msa0150800:CDS
AAAGCACACAAGAAAGGTGC+AGG 0.573277 1_4:+12474422 None:intergenic
TGATGAAGAATGAAGATTGA+GGG 0.575315 1_4:+12479172 None:intergenic
TTGTTTCATCTTGATTACAA+AGG 0.589749 1_4:-12474688 Msa0150800:three_prime_UTR
TTGTAGCCGAGAAAGGGAAG+AGG 0.590752 1_4:-12475090 Msa0150800:CDS
AGCGATTCTCGAGAAAATCT+GGG 0.598287 1_4:-12479062 Msa0150800:CDS
CAAGTTACCAGAATGGGCAC+TGG 0.598404 1_4:+12474838 None:intergenic
GTCTTCAAGATTCTCAAGCG+CGG 0.605195 1_4:+12478802 None:intergenic
TCATCAACATCGTCATTCAC+CGG 0.607132 1_4:+12478863 None:intergenic
GTGATGAAGAATGAAGATTG+AGG 0.610028 1_4:+12479171 None:intergenic
ATCAATGTGGTGAAATGACG+AGG 0.620196 1_4:-12474779 Msa0150800:three_prime_UTR
GTTTGCTTGATGACAAGGGA+AGG 0.621517 1_4:+12479194 None:intergenic
AAGCAAAGCAATCATACTAA+CGG 0.628861 1_4:+12474964 None:intergenic
TGTTGCTAGCGAAACGACAC+CGG 0.631231 1_4:-12478936 Msa0150800:CDS
AGAATACATTACTGTTGCAA+TGG 0.641597 1_4:-12474323 Msa0150800:three_prime_UTR
TGCTAGCGAAACGACACCGG+AGG 0.643973 1_4:-12478933 Msa0150800:CDS
TTGTAATCAAGATGAAACAA+AGG 0.647840 1_4:+12474691 None:intergenic
GCTAGCGAAACGACACCGGA+GGG 0.647863 1_4:-12478932 Msa0150800:CDS
TGTTCTTGCAATGAGACTGG+CGG 0.651653 1_4:-12475236 Msa0150800:CDS
CCGGAGGGTAATAACGGTAA+CGG 0.657670 1_4:-12478917 Msa0150800:CDS
CAACCAGTGCAAACTTTCGG+CGG 0.677044 1_4:+12474553 None:intergenic
CTTGGGTTGGATCATATGGG+CGG 0.685255 1_4:-12475013 Msa0150800:CDS
TAGTTGGATAGCGTCATCTG+TGG 0.687210 1_4:-12474451 Msa0150800:three_prime_UTR
GAGGGTTTGCTTGATGACAA+GGG 0.702328 1_4:+12479190 None:intergenic
GGGAGAATAGGCTAAAATGG+AGG 0.709595 1_4:-12474641 Msa0150800:three_prime_UTR
TCAATGTGGTGAAATGACGA+GGG 0.709734 1_4:-12474778 Msa0150800:three_prime_UTR
GGGTTAAACCTCTATCAATG+TGG 0.710574 1_4:-12474792 Msa0150800:three_prime_UTR
ATGAGACTGGCGGAACATCG+TGG 0.714608 1_4:-12475226 Msa0150800:CDS
GCAGATGTACATGATGCTAG+CGG 0.758662 1_4:-12475163 Msa0150800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATTACAAAATTATG+TGG - chr1_4:12474843-12474862 Msa0150800:CDS 10.0%
!!! GTTATATATTGTTTATTTTA+AGG + chr1_4:12475419-12475438 None:intergenic 10.0%
!!! ATTATTGTTTGAATTTTATA+TGG - chr1_4:12476096-12476115 Msa0150800:intron 10.0%
!!! TTATTGTTTGAATTTTATAT+GGG - chr1_4:12476097-12476116 Msa0150800:intron 10.0%
!!! TAGAGATTTTTTTTTTTTTT+TGG + chr1_4:12477445-12477464 None:intergenic 10.0%
!! TTATCAATTCAAATTCAAAA+AGG + chr1_4:12474996-12475015 None:intergenic 15.0%
!!! ACTACAATAAAATTGTATTT+TGG + chr1_4:12475309-12475328 None:intergenic 15.0%
!!! ACTTTTATTAATGGTAAAAT+AGG - chr1_4:12475334-12475353 Msa0150800:intron 15.0%
!!! TACAAATAATTTAAAGCAAA+AGG + chr1_4:12475824-12475843 None:intergenic 15.0%
!!! ATTATTTGTAAGTTTTGATT+TGG - chr1_4:12475834-12475853 Msa0150800:intron 15.0%
!! GATTTAATTAATTGTCAATT+AGG - chr1_4:12476006-12476025 Msa0150800:intron 15.0%
!! TATAAAAATGAGTATTATGT+TGG + chr1_4:12476412-12476431 None:intergenic 15.0%
!!! AATTTTAAAGCATTGTTATT+CGG - chr1_4:12476778-12476797 Msa0150800:intron 15.0%
!! TCAAATAAAAAATTTCTATG+TGG - chr1_4:12477077-12477096 Msa0150800:intron 15.0%
!!! AGATTTTTTTTTTTTTTTGG+TGG + chr1_4:12477442-12477461 None:intergenic 15.0%
!!! TTTTTGTTGAATTTGATTCT+AGG - chr1_4:12474702-12474721 Msa0150800:three_prime_UTR 20.0%
!!! TTTTGTTGAATTTGATTCTA+GGG - chr1_4:12474703-12474722 Msa0150800:three_prime_UTR 20.0%
!!! GTTTTTGTGATTTGAAATTT+TGG - chr1_4:12474769-12474788 Msa0150800:three_prime_UTR 20.0%
!!! TAGTAACTGACTTTTATTAA+TGG - chr1_4:12475325-12475344 Msa0150800:intron 20.0%
!! TGTTCTTAAACTTCTTATTA+TGG + chr1_4:12475455-12475474 None:intergenic 20.0%
!! TTCGTTATGATTTATGAAAT+GGG + chr1_4:12475611-12475630 None:intergenic 20.0%
!! TTTCGTTATGATTTATGAAA+TGG + chr1_4:12475612-12475631 None:intergenic 20.0%
!!! GTATTTTGTAATTTCTTATG+AGG - chr1_4:12475675-12475694 Msa0150800:intron 20.0%
!! CAAACAATAATATTGAAACA+CGG + chr1_4:12476087-12476106 None:intergenic 20.0%
!! GTTACAATATTACATTAGTT+TGG + chr1_4:12476524-12476543 None:intergenic 20.0%
!!! AAGATACAACCAATTAATTT+TGG - chr1_4:12476731-12476750 Msa0150800:intron 20.0%
!!! AGACCATTATTTTTTAACTT+AGG - chr1_4:12476867-12476886 Msa0150800:intron 20.0%
!! TCTCCTAAGTTAAAAAATAA+TGG + chr1_4:12476873-12476892 None:intergenic 20.0%
!! TAATTATACTGAAAATGGTA+AGG + chr1_4:12477138-12477157 None:intergenic 20.0%
!! AATCCCTAATGATTAATATT+TGG - chr1_4:12477317-12477336 Msa0150800:intron 20.0%
!! ATCCCTAATGATTAATATTT+GGG - chr1_4:12477318-12477337 Msa0150800:intron 20.0%
!! AACCCAAATATTAATCATTA+GGG + chr1_4:12477323-12477342 None:intergenic 20.0%
!! AAACCCAAATATTAATCATT+AGG + chr1_4:12477324-12477343 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTTGGTGG+TGG + chr1_4:12477439-12477458 None:intergenic 20.0%
!!! TTAATGGGTATAAGAATATT+TGG + chr1_4:12477711-12477730 None:intergenic 20.0%
!!! GTTTTGTTAGAAGTATTAAT+GGG + chr1_4:12477726-12477745 None:intergenic 20.0%
!!! TGTTTTGTTAGAAGTATTAA+TGG + chr1_4:12477727-12477746 None:intergenic 20.0%
!! GATTTAATGAGTTAATGTAA+AGG - chr1_4:12477887-12477906 Msa0150800:intron 20.0%
!! TAATGTAAAGGATTCTTATT+TGG - chr1_4:12477899-12477918 Msa0150800:intron 20.0%
!! TTCAAAAAATAAACAAGATG+TGG + chr1_4:12478073-12478092 None:intergenic 20.0%
!!! TCTTGTTTATTTTTTGAACA+TGG - chr1_4:12478075-12478094 Msa0150800:intron 20.0%
!! TAATCATGAACATTCATTTA+GGG - chr1_4:12478515-12478534 Msa0150800:intron 20.0%
!! AAATTCACATATGGATATTA+GGG + chr1_4:12479232-12479251 None:intergenic 20.0%
!! AAAATTCACATATGGATATT+AGG + chr1_4:12479233-12479252 None:intergenic 20.0%
!! ATTAACACAAAATTCACATA+TGG + chr1_4:12479241-12479260 None:intergenic 20.0%
!! TTGTTTATGTGAAGGATTTT+CGG - chr1_4:12474553-12474572 Msa0150800:three_prime_UTR 25.0%
!! CACTTTATGATTTGAGATTT+AGG - chr1_4:12474912-12474931 Msa0150800:CDS 25.0%
! ATATTGTTTATGTCAGAAAC+TGG - chr1_4:12475281-12475300 Msa0150800:CDS 25.0%
! TAAATAGTATTACACCCATA+TGG - chr1_4:12475366-12475385 Msa0150800:intron 25.0%
! TAAGGAATAAATAGAGAAAG+TGG + chr1_4:12475401-12475420 None:intergenic 25.0%
!! TGTTCACATCATTCATTTTA+TGG + chr1_4:12475738-12475757 None:intergenic 25.0%
! TAAAATGAATGATGTGAACA+TGG - chr1_4:12475738-12475757 Msa0150800:intron 25.0%
! AAAATGAATGATGTGAACAT+GGG - chr1_4:12475739-12475758 Msa0150800:intron 25.0%
!!! AGTTTTGATTTGGAATATTC+TGG - chr1_4:12475844-12475863 Msa0150800:intron 25.0%
! TAATGTCAGTTCAGATTAAA+TGG - chr1_4:12476153-12476172 Msa0150800:intron 25.0%
!! TTTTAGGCAATAGAGAAAAT+TGG - chr1_4:12476287-12476306 Msa0150800:intron 25.0%
!! GTTATTTCATATGATACATG+TGG - chr1_4:12476361-12476380 Msa0150800:intron 25.0%
!! ACAATATTACATTAGTTTGG+TGG + chr1_4:12476521-12476540 None:intergenic 25.0%
! TATATTTGTAACAAGCTAAG+AGG + chr1_4:12476583-12476602 None:intergenic 25.0%
! TTCTTACTTCTTTAGATTAG+TGG + chr1_4:12477003-12477022 None:intergenic 25.0%
! AAGTAAGAAGTTTATGTCTT+GGG - chr1_4:12477014-12477033 Msa0150800:intron 25.0%
!! TTAATCATTAGGGATTTTGT+GGG + chr1_4:12477313-12477332 None:intergenic 25.0%
!! ATTAATCATTAGGGATTTTG+TGG + chr1_4:12477314-12477333 None:intergenic 25.0%
!!! TCAGTATAATTAGGAGTATT+AGG + chr1_4:12477608-12477627 None:intergenic 25.0%
! CTTCTACTATCAGTATAATT+AGG + chr1_4:12477617-12477636 None:intergenic 25.0%
! AATAATATGTCTCATTGATC+TGG + chr1_4:12477663-12477682 None:intergenic 25.0%
! ATCATGCATATATACATTGT+CGG + chr1_4:12477958-12477977 None:intergenic 25.0%
!!! ATTTTTACCACGACTTTTTT+TGG - chr1_4:12478047-12478066 Msa0150800:intron 25.0%
!! AATTTTGTGAAGAAATCTCT+TGG - chr1_4:12478408-12478427 Msa0150800:intron 25.0%
!! ATTTTGTGAAGAAATCTCTT+GGG - chr1_4:12478409-12478428 Msa0150800:intron 25.0%
! CTAATCATGAACATTCATTT+AGG - chr1_4:12478514-12478533 Msa0150800:intron 25.0%
!!! TTTTTTTCTTTATGCGCTTT+TGG - chr1_4:12478724-12478743 Msa0150800:intron 25.0%
! TTGTAATCAAGATGAAACAA+AGG + chr1_4:12478751-12478770 None:intergenic 25.0%
! TTGTTTCATCTTGATTACAA+AGG - chr1_4:12478751-12478770 Msa0150800:intron 25.0%
! ACAAGAAAAATCAAGGTAAA+AGG + chr1_4:12479062-12479081 None:intergenic 25.0%
! AAAACGAACAAGAAAAATCA+AGG + chr1_4:12479069-12479088 None:intergenic 25.0%
!!! TAGTTGTTAGTTGTTGTTTT+TGG - chr1_4:12479178-12479197 Msa0150800:five_prime_UTR 25.0%
!! CATTTGTTGGATTAATAAAG+AGG + chr1_4:12479206-12479225 None:intergenic 25.0%
TGATGAAGAATGAAGATTGA+GGG + chr1_4:12474270-12474289 None:intergenic 30.0%
!!! TAACGGTTTTGTTTATGTGA+AGG - chr1_4:12474545-12474564 Msa0150800:three_prime_UTR 30.0%
!! TTGAATTTGATTCTAGGGTT+TGG - chr1_4:12474708-12474727 Msa0150800:three_prime_UTR 30.0%
! TTAGGTTAATTGACTCTTTG+AGG - chr1_4:12474930-12474949 Msa0150800:CDS 30.0%
! TCTTTGAGGAAATGAATGAT+AGG - chr1_4:12474944-12474963 Msa0150800:CDS 30.0%
TAGGGTTAATTACCATTAGA+TGG - chr1_4:12475032-12475051 Msa0150800:CDS 30.0%
AGGGTTAATTACCATTAGAT+GGG - chr1_4:12475033-12475052 Msa0150800:CDS 30.0%
ATAATTAAGTCCCCATCTAA+TGG + chr1_4:12475047-12475066 None:intergenic 30.0%
CTAATCTAATCACTATTGTC+CGG + chr1_4:12475196-12475215 None:intergenic 30.0%
TTGTCATATAGCAGTTATAG+CGG + chr1_4:12475251-12475270 None:intergenic 30.0%
! AGTGGTTACATTTTCCATAT+GGG + chr1_4:12475383-12475402 None:intergenic 30.0%
! AAGTGGTTACATTTTCCATA+TGG + chr1_4:12475384-12475403 None:intergenic 30.0%
! TATTTAGTGTGGTGCTAAAT+AGG + chr1_4:12475498-12475517 None:intergenic 30.0%
TATTTAGCACCACACTAAAT+AGG - chr1_4:12475497-12475516 Msa0150800:intron 30.0%
AAATGTTATACTCCACAATG+GGG + chr1_4:12475526-12475545 None:intergenic 30.0%
CAAATGTTATACTCCACAAT+GGG + chr1_4:12475527-12475546 None:intergenic 30.0%
CATTGTGGAGTATAACATTT+GGG - chr1_4:12475526-12475545 Msa0150800:intron 30.0%
!! AAAGTATTGTCCAACTAAAC+TGG + chr1_4:12475896-12475915 None:intergenic 30.0%
AACTGACATTAAAAAGCTCT+CGG + chr1_4:12476144-12476163 None:intergenic 30.0%
CTGTATTCTGCAGTAAATTT+AGG - chr1_4:12476179-12476198 Msa0150800:intron 30.0%
! GACTCTCAACAATGAATTTT+AGG - chr1_4:12476271-12476290 Msa0150800:intron 30.0%
TAGTTTACGCTACTAAACAT+AGG + chr1_4:12476456-12476475 None:intergenic 30.0%
TATTGTAACAGACAAACACT+TGG - chr1_4:12476535-12476554 Msa0150800:intron 30.0%
TCATGCAGTCCAAAATTAAT+TGG + chr1_4:12476743-12476762 None:intergenic 30.0%
!! TTTAAAGCATTGTTATTCGG+TGG - chr1_4:12476781-12476800 Msa0150800:intron 30.0%
GCATATTAAGTAAAAACGTG+AGG + chr1_4:12476823-12476842 None:intergenic 30.0%
! AACAAGTTTTCAAAGCTCTT+GGG + chr1_4:12476896-12476915 None:intergenic 30.0%
!! AAGAGCTTTGAAAACTTGTT+GGG - chr1_4:12476896-12476915 Msa0150800:intron 30.0%
AAGTAAACACTAAGAAGTCA+TGG - chr1_4:12476974-12476993 Msa0150800:intron 30.0%
GAAGTAAGAAGTTTATGTCT+TGG - chr1_4:12477013-12477032 Msa0150800:intron 30.0%
CGCTCTAATTATACTGAAAA+TGG + chr1_4:12477143-12477162 None:intergenic 30.0%
!!! AGGTATTTGAGTGGTTTTAT+AGG + chr1_4:12477289-12477308 None:intergenic 30.0%
! TAATCATTAGGGATTTTGTG+GGG + chr1_4:12477312-12477331 None:intergenic 30.0%
GACAATGCATAATATATGCA+TGG - chr1_4:12477394-12477413 Msa0150800:intron 30.0%
TCCAGATCGTTAAAGAATTA+GGG + chr1_4:12477780-12477799 None:intergenic 30.0%
ATCCAGATCGTTAAAGAATT+AGG + chr1_4:12477781-12477800 None:intergenic 30.0%
TCAATAGAACTAATGTTCCA+TGG - chr1_4:12477833-12477852 Msa0150800:intron 30.0%
AACGGTAAGTTTGTATAACA+GGG - chr1_4:12477856-12477875 Msa0150800:intron 30.0%
!! GTTTTTCATCTAGTTTCTTC+TGG - chr1_4:12477983-12478002 Msa0150800:intron 30.0%
TAAGCATGCAATTAACTGAT+TGG + chr1_4:12478025-12478044 None:intergenic 30.0%
TTTGGTTGTTCAAAAACTTC+AGG + chr1_4:12478312-12478331 None:intergenic 30.0%
TTGAGACAAAAACATTGATG+AGG + chr1_4:12478383-12478402 None:intergenic 30.0%
AAGCAAAGCAATCATACTAA+CGG + chr1_4:12478478-12478497 None:intergenic 30.0%
!!! TGGTAACTTGGATGTTTTTT+TGG - chr1_4:12478614-12478633 Msa0150800:intron 30.0%
TTTCATCTTGATTACAAAGG+AGG - chr1_4:12478754-12478773 Msa0150800:intron 30.0%
TGCATATGCTTATACTTAGT+TGG - chr1_4:12478972-12478991 Msa0150800:CDS 30.0%
TAAACTAAAGCACACAAGAA+AGG + chr1_4:12479026-12479045 None:intergenic 30.0%
CACAAAAGATTCTACTAAGT+GGG + chr1_4:12479096-12479115 None:intergenic 30.0%
TCACAAAAGATTCTACTAAG+TGG + chr1_4:12479097-12479116 None:intergenic 30.0%
AGAATACATTACTGTTGCAA+TGG - chr1_4:12479116-12479135 Msa0150800:exon 30.0%
GATATTAGGGAATCATTTGT+TGG + chr1_4:12479219-12479238 None:intergenic 30.0%
! ATGACAAGGGAAGGAATTTT+TGG + chr1_4:12474239-12474258 None:intergenic 35.0%
GTGATGAAGAATGAAGATTG+AGG + chr1_4:12474271-12474290 None:intergenic 35.0%
GAACGCGATTATGAAAAAAG+CGG + chr1_4:12474303-12474322 None:intergenic 35.0%
AATGAAATGGAACACGCAAA+TGG - chr1_4:12474344-12474363 Msa0150800:three_prime_UTR 35.0%
GAGAAAATGAGATCGTGAAA+TGG + chr1_4:12474436-12474455 None:intergenic 35.0%
!! GGTTTGGTGTATTACGAATT+AGG - chr1_4:12474724-12474743 Msa0150800:three_prime_UTR 35.0%
ATAGGAGTCAATTGTGTGTA+GGG - chr1_4:12474962-12474981 Msa0150800:CDS 35.0%
GGGTTAATTACCATTAGATG+GGG - chr1_4:12475034-12475053 Msa0150800:CDS 35.0%
TCGTCAAATAGCAGTTACTA+TGG + chr1_4:12475149-12475168 None:intergenic 35.0%
! TGTTCTAAATAGCGTATTGC+CGG - chr1_4:12475174-12475193 Msa0150800:CDS 35.0%
AATGTTATACTCCACAATGG+GGG + chr1_4:12475525-12475544 None:intergenic 35.0%
CCAAATGTTATACTCCACAA+TGG + chr1_4:12475528-12475547 None:intergenic 35.0%
CCATTGTGGAGTATAACATT+TGG - chr1_4:12475525-12475544 Msa0150800:intron 35.0%
TGTAATTTCTTATGAGGTGC+TGG - chr1_4:12475681-12475700 Msa0150800:intron 35.0%
! GTAATTTCTTATGAGGTGCT+GGG - chr1_4:12475682-12475701 Msa0150800:intron 35.0%
AGTATCATACGTGTTCTACT+AGG - chr1_4:12475870-12475889 Msa0150800:intron 35.0%
TGGACAAACAAAAGGAATGT+TGG - chr1_4:12475954-12475973 Msa0150800:intron 35.0%
! AAGTTTGACTTTCAAACAGC+AGG - chr1_4:12476037-12476056 Msa0150800:intron 35.0%
! AGTTTGACTTTCAAACAGCA+GGG - chr1_4:12476038-12476057 Msa0150800:intron 35.0%
AGGCAATAGAGAAAATTGGA+AGG - chr1_4:12476291-12476310 Msa0150800:intron 35.0%
TGATACATGTGGCAGAAATA+TGG - chr1_4:12476372-12476391 Msa0150800:intron 35.0%
! TGTTGAGGCAATTTTCTGTT+GGG + chr1_4:12476609-12476628 None:intergenic 35.0%
! ATGTTGAGGCAATTTTCTGT+TGG + chr1_4:12476610-12476629 None:intergenic 35.0%
! CAACAAGTTTTCAAAGCTCT+TGG + chr1_4:12476897-12476916 None:intergenic 35.0%
!! CAAGAGCTTTGAAAACTTGT+TGG - chr1_4:12476895-12476914 Msa0150800:intron 35.0%
TGAAAATGGTAAGGAAGAGT+TGG + chr1_4:12477129-12477148 None:intergenic 35.0%
CAGTATAATTAGAGCGTAGA+TGG - chr1_4:12477147-12477166 Msa0150800:intron 35.0%
ATGAGGACAAACTGAAATTC+AGG + chr1_4:12477353-12477372 None:intergenic 35.0%
CATAATATATGCATGGTCCA+GGG - chr1_4:12477401-12477420 Msa0150800:intron 35.0%
!!! TTTTTTTTTTTGGTGGTGGC+CGG + chr1_4:12477435-12477454 None:intergenic 35.0%
ACAATAGTATTGTCTCAGCA+TGG + chr1_4:12477543-12477562 None:intergenic 35.0%
ATTAGGTACATAGTATACCC+AGG + chr1_4:12477591-12477610 None:intergenic 35.0%
ACCCTAATTCTTTAACGATC+TGG - chr1_4:12477776-12477795 Msa0150800:intron 35.0%
AGAACTAATGTTCCATGGAA+CGG - chr1_4:12477838-12477857 Msa0150800:intron 35.0%
TATACAAACTTACCGTTCCA+TGG + chr1_4:12477853-12477872 None:intergenic 35.0%
GAACGGTAAGTTTGTATAAC+AGG - chr1_4:12477855-12477874 Msa0150800:intron 35.0%
ACGGTAAGTTTGTATAACAG+GGG - chr1_4:12477857-12477876 Msa0150800:intron 35.0%
GGTCTACATATCATACAGAA+AGG + chr1_4:12478121-12478140 None:intergenic 35.0%
CAAAAACTTCAGGTGAAACA+AGG + chr1_4:12478302-12478321 None:intergenic 35.0%
! AAACTCTCATCTGCACATTT+TGG + chr1_4:12478330-12478349 None:intergenic 35.0%
AACATCCAAGTTACCAGAAT+GGG + chr1_4:12478610-12478629 None:intergenic 35.0%
AAACATCCAAGTTACCAGAA+TGG + chr1_4:12478611-12478630 None:intergenic 35.0%
!!! TTGGATGTTTTTTTGGCTAG+AGG - chr1_4:12478621-12478640 Msa0150800:intron 35.0%
!!! TGTTTTTTTGGCTAGAGGTT+AGG - chr1_4:12478626-12478645 Msa0150800:intron 35.0%
!!! GTTTTTTTGGCTAGAGGTTA+GGG - chr1_4:12478627-12478646 Msa0150800:intron 35.0%
TCATTTCACCACATTGATAG+AGG + chr1_4:12478658-12478677 None:intergenic 35.0%
TTTAGTGAGTTTGCCCAAAA+TGG - chr1_4:12478830-12478849 Msa0150800:CDS 35.0%
! ATGACACCAAACTCCATTTT+GGG + chr1_4:12478846-12478865 None:intergenic 35.0%
! AATGACACCAAACTCCATTT+TGG + chr1_4:12478847-12478866 None:intergenic 35.0%
!!! CGTTGTGTCGTTTTTTGTAG+AGG + chr1_4:12474211-12474230 None:intergenic 40.0%
CGCGTTTCGATGAAATGAAA+TGG - chr1_4:12474331-12474350 Msa0150800:three_prime_UTR 40.0%
AAGCGATTCTCGAGAAAATC+TGG - chr1_4:12474376-12474395 Msa0150800:three_prime_UTR 40.0%
AGCGATTCTCGAGAAAATCT+GGG - chr1_4:12474377-12474396 Msa0150800:three_prime_UTR 40.0%
! GGTAATAACGGTAACGGTAA+CGG - chr1_4:12474528-12474547 Msa0150800:three_prime_UTR 40.0%
! TTATGTGAAGGATTTTCGGC+CGG - chr1_4:12474557-12474576 Msa0150800:three_prime_UTR 40.0%
TCATCAACATCGTCATTCAC+CGG + chr1_4:12474579-12474598 None:intergenic 40.0%
AAGACTCTTCGCTTCATGAA+CGG + chr1_4:12474604-12474623 None:intergenic 40.0%
TCACATGAAAATACTCGAGC+TGG + chr1_4:12474662-12474681 None:intergenic 40.0%
GATAGGAGTCAATTGTGTGT+AGG - chr1_4:12474961-12474980 Msa0150800:CDS 40.0%
GAAGTTTAAGAACATCCGCA+AGG - chr1_4:12475461-12475480 Msa0150800:intron 40.0%
TTTAAGAACATCCGCAAGGT+GGG - chr1_4:12475465-12475484 Msa0150800:intron 40.0%
GTATAACATTTGGGTGCCTA+TGG - chr1_4:12475535-12475554 Msa0150800:intron 40.0%
GAAAAGTGAAGAGAGAGAGA+GGG + chr1_4:12475582-12475601 None:intergenic 40.0%
TTCTACTAGGCCAGTTTAGT+TGG - chr1_4:12475883-12475902 Msa0150800:intron 40.0%
AACCCACATTGTCATTCCTT+GGG + chr1_4:12475935-12475954 None:intergenic 40.0%
!! ATGTGGGTTGGACAAACAAA+AGG - chr1_4:12475946-12475965 Msa0150800:intron 40.0%
GGCATAGCAAAGAAATTTGC+AGG + chr1_4:12476225-12476244 None:intergenic 40.0%
CAACAATGTGGTACTGTGAT+TGG + chr1_4:12476246-12476265 None:intergenic 40.0%
GAGAGTCAGAATCAACAATG+TGG + chr1_4:12476258-12476277 None:intergenic 40.0%
TTGGAAGGTTGTCTGATAAG+TGG - chr1_4:12476306-12476325 Msa0150800:intron 40.0%
TGGAAGGTTGTCTGATAAGT+GGG - chr1_4:12476307-12476326 Msa0150800:intron 40.0%
! GTTGAGGCAATTTTCTGTTG+GGG + chr1_4:12476608-12476627 None:intergenic 40.0%
GAAGCACGCATTATATGTTG+AGG + chr1_4:12476624-12476643 None:intergenic 40.0%
CGTGCTTCATAATACATAGC+TGG - chr1_4:12476636-12476655 Msa0150800:intron 40.0%
AAACAGCGTATCTTGAAGTC+AGG - chr1_4:12476679-12476698 Msa0150800:intron 40.0%
TTGTGTATGCGACACTACAA+GGG + chr1_4:12476846-12476865 None:intergenic 40.0%
ATTGTGTATGCGACACTACA+AGG + chr1_4:12476847-12476866 None:intergenic 40.0%
ATTAGAGCGTAGATGGTCAT+TGG - chr1_4:12477154-12477173 Msa0150800:intron 40.0%
AAACCTCTGTTGCAAACCAA+AGG - chr1_4:12477245-12477264 Msa0150800:intron 40.0%
AACCTCTGTTGCAAACCAAA+GGG - chr1_4:12477246-12477265 Msa0150800:intron 40.0%
ATGATCTTAGCTCAGTTGGT+AGG - chr1_4:12477371-12477390 Msa0150800:intron 40.0%
! TGATCTTAGCTCAGTTGGTA+GGG - chr1_4:12477372-12477391 Msa0150800:intron 40.0%
GCATAATATATGCATGGTCC+AGG - chr1_4:12477400-12477419 Msa0150800:intron 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG + chr1_4:12477434-12477453 None:intergenic 40.0%
! TCTCTATTTTGCCGCAAAAG+TGG - chr1_4:12477459-12477478 Msa0150800:intron 40.0%
!! TTCCTTGCAGTTGATAATCC+TGG - chr1_4:12477570-12477589 Msa0150800:intron 40.0%
!! TCCTTGCAGTTGATAATCCT+GGG - chr1_4:12477571-12477590 Msa0150800:intron 40.0%
!! GTTTCTTCTGGAACATGAGA+AGG - chr1_4:12477995-12478014 Msa0150800:intron 40.0%
ACTTGTTCTTGCAATGAGAC+TGG - chr1_4:12478200-12478219 Msa0150800:intron 40.0%
!! AGAGTTTTGTAGCCGAGAAA+GGG - chr1_4:12478343-12478362 Msa0150800:intron 40.0%
ATTAGACCTCTTCCCTTTCT+CGG + chr1_4:12478358-12478377 None:intergenic 40.0%
TGTGAAGAAATCTCTTGGGT+TGG - chr1_4:12478413-12478432 Msa0150800:intron 40.0%
!! ATCTCTTGGGTTGGATCATA+TGG - chr1_4:12478422-12478441 Msa0150800:intron 40.0%
!! TCTCTTGGGTTGGATCATAT+GGG - chr1_4:12478423-12478442 Msa0150800:intron 40.0%
AATAGTAGGAAATGCTGCTC+TGG - chr1_4:12478449-12478468 Msa0150800:intron 40.0%
TATGAGAAGAACAGCTCACT+TGG - chr1_4:12478566-12478585 Msa0150800:intron 40.0%
GGGTTAAACCTCTATCAATG+TGG - chr1_4:12478647-12478666 Msa0150800:intron 40.0%
ATCAATGTGGTGAAATGACG+AGG - chr1_4:12478660-12478679 Msa0150800:intron 40.0%
! TACAAAGGAGGTCTGAAATC+TGG - chr1_4:12478766-12478785 Msa0150800:intron 40.0%
GAAGGGAGAATAGGCTAAAA+TGG - chr1_4:12478795-12478814 Msa0150800:CDS 40.0%
AGTTTGCCCAAAATGGAGTT+TGG - chr1_4:12478837-12478856 Msa0150800:CDS 40.0%
ATGCAACCAGTGCAAACTTT+CGG + chr1_4:12478892-12478911 None:intergenic 40.0%
! GTTTGCTTGATGACAAGGGA+AGG + chr1_4:12474248-12474267 None:intergenic 45.0%
! GAGGGTTTGCTTGATGACAA+GGG + chr1_4:12474252-12474271 None:intergenic 45.0%
! TGAGGGTTTGCTTGATGACA+AGG + chr1_4:12474253-12474272 None:intergenic 45.0%
GTCTTCAAGATTCTCAAGCG+CGG + chr1_4:12474640-12474659 None:intergenic 45.0%
GTTTAAGAACATCCGCAAGG+TGG - chr1_4:12475464-12475483 Msa0150800:intron 45.0%
ATTTGGGTGCCTATGGAGAA+GGG - chr1_4:12475542-12475561 Msa0150800:intron 45.0%
CGAAAAGTGAAGAGAGAGAG+AGG + chr1_4:12475583-12475602 None:intergenic 45.0%
!! CTCTCTCTCTTCACTTTTCG+CGG - chr1_4:12475583-12475602 Msa0150800:intron 45.0%
!! TTTCTTATGAGGTGCTGGGT+TGG - chr1_4:12475686-12475705 Msa0150800:intron 45.0%
! GGTGCTGGGTTGGAAAAAAT+TGG - chr1_4:12475696-12475715 Msa0150800:intron 45.0%
! GCTGGGTTGGAAAAAATTGG+TGG - chr1_4:12475699-12475718 Msa0150800:intron 45.0%
ACCCATTTAAGCACCCAATG+TGG - chr1_4:12475764-12475783 Msa0150800:intron 45.0%
CCCACATTGGGTGCTTAAAT+GGG + chr1_4:12475768-12475787 None:intergenic 45.0%
CCCATTTAAGCACCCAATGT+GGG - chr1_4:12475765-12475784 Msa0150800:intron 45.0%
ACCCACATTGGGTGCTTAAA+TGG + chr1_4:12475769-12475788 None:intergenic 45.0%
CACATGAATGTATGACCCCA+AGG - chr1_4:12475916-12475935 Msa0150800:intron 45.0%
ACCCCAAGGAATGACAATGT+GGG - chr1_4:12475930-12475949 Msa0150800:intron 45.0%
ACCCACATTGTCATTCCTTG+GGG + chr1_4:12475934-12475953 None:intergenic 45.0%
CAACCCACATTGTCATTCCT+TGG + chr1_4:12475936-12475955 None:intergenic 45.0%
CAAGGAATGACAATGTGGGT+TGG - chr1_4:12475934-12475953 Msa0150800:intron 45.0%
TTGACTTTCAAACAGCAGGG+TGG - chr1_4:12476041-12476060 Msa0150800:intron 45.0%
CAGTCGTACTGAACTAAGCT+TGG + chr1_4:12476485-12476504 None:intergenic 45.0%
GGAAGTGAAGTCATCGTTAC+TGG - chr1_4:12476700-12476719 Msa0150800:intron 45.0%
GACTGCATGATGCATGATCA+AGG - chr1_4:12476753-12476772 Msa0150800:intron 45.0%
TGTGTATGCGACACTACAAG+GGG + chr1_4:12476845-12476864 None:intergenic 45.0%
TGACTGCAGCTAGATGTGTT+TGG + chr1_4:12476936-12476955 None:intergenic 45.0%
TGATAGCTAGTCCCTAGAGT+TGG - chr1_4:12477178-12477197 Msa0150800:intron 45.0%
TGACCAGATGACCAACTCTA+GGG + chr1_4:12477192-12477211 None:intergenic 45.0%
TTCTCACTTCGTCCTCGTTT+GGG + chr1_4:12477215-12477234 None:intergenic 45.0%
TTTCTCACTTCGTCCTCGTT+TGG + chr1_4:12477216-12477235 None:intergenic 45.0%
TTGCAAACCAAAGGGAGTTC+TGG - chr1_4:12477254-12477273 Msa0150800:intron 45.0%
AATCACACCAGAACTCCCTT+TGG + chr1_4:12477264-12477283 None:intergenic 45.0%
!! TTTGTGGGGAGGTATTTGAG+TGG + chr1_4:12477298-12477317 None:intergenic 45.0%
! TCATTAGGGATTTTGTGGGG+AGG + chr1_4:12477309-12477328 None:intergenic 45.0%
CCAACTGAGCTAAGATCATG+AGG + chr1_4:12477370-12477389 None:intergenic 45.0%
CCTCATGATCTTAGCTCAGT+TGG - chr1_4:12477367-12477386 Msa0150800:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG + chr1_4:12477433-12477452 None:intergenic 45.0%
GATAGTGAACAGCGACACAA+TGG - chr1_4:12477495-12477514 Msa0150800:intron 45.0%
!! GAGGGCATTGTATCTGCTAT+GGG - chr1_4:12477517-12477536 Msa0150800:intron 45.0%
ACCCAGGATTATCAACTGCA+AGG + chr1_4:12477575-12477594 None:intergenic 45.0%
GATGTGGCCAAAAAAAGTCG+TGG + chr1_4:12478057-12478076 None:intergenic 45.0%
TGTTCTTGCAATGAGACTGG+CGG - chr1_4:12478203-12478222 Msa0150800:intron 45.0%
GCAGATGTACATGATGCTAG+CGG - chr1_4:12478276-12478295 Msa0150800:intron 45.0%
!! GAGAGTTTTGTAGCCGAGAA+AGG - chr1_4:12478342-12478361 Msa0150800:intron 45.0%
GATCATATGGGCGGAATAGT+AGG - chr1_4:12478435-12478454 Msa0150800:intron 45.0%
! TCTGAAATCTGGTCTGGTGA+AGG - chr1_4:12478777-12478796 Msa0150800:intron 45.0%
CTGAAATCTGGTCTGGTGAA+GGG - chr1_4:12478778-12478797 Msa0150800:intron 45.0%
GGGAGAATAGGCTAAAATGG+AGG - chr1_4:12478798-12478817 Msa0150800:CDS 45.0%
! TGATAACGCGTGAGAGATGT+AGG - chr1_4:12478923-12478942 Msa0150800:CDS 45.0%
!! TGTCTGTCGATTCACACTTC+TGG - chr1_4:12478949-12478968 Msa0150800:CDS 45.0%
TAGTTGGATAGCGTCATCTG+TGG - chr1_4:12478988-12479007 Msa0150800:CDS 45.0%
! AAAGCACACAAGAAAGGTGC+AGG + chr1_4:12479020-12479039 None:intergenic 45.0%
!! TAATAAAGTAATTATTTAAT+AGG - chr1_4:12475013-12475032 Msa0150800:CDS 5.0%
!! AATAAAGTAATTATTTAATA+GGG - chr1_4:12475014-12475033 Msa0150800:CDS 5.0%
TGTTGCTAGCGAAACGACAC+CGG - chr1_4:12474503-12474522 Msa0150800:three_prime_UTR 50.0%
ACGACACCGGAGGGTAATAA+CGG - chr1_4:12474516-12474535 Msa0150800:three_prime_UTR 50.0%
CCGTTACCGTTATTACCCTC+CGG + chr1_4:12474525-12474544 None:intergenic 50.0%
CCGGAGGGTAATAACGGTAA+CGG - chr1_4:12474522-12474541 Msa0150800:three_prime_UTR 50.0%
ACTATGGCGCTATAGCGTTG+TGG + chr1_4:12475133-12475152 None:intergenic 50.0%
!! ATGGGGGTGCCTATTTAGTG+TGG + chr1_4:12475509-12475528 None:intergenic 50.0%
CTAAATAGGCACCCCCATTG+TGG - chr1_4:12475511-12475530 Msa0150800:intron 50.0%
CATTTGGGTGCCTATGGAGA+AGG - chr1_4:12475541-12475560 Msa0150800:intron 50.0%
TTTGGGTGCCTATGGAGAAG+GGG - chr1_4:12475543-12475562 Msa0150800:intron 50.0%
! CACAACAGAGCACCCACATT+GGG + chr1_4:12475780-12475799 None:intergenic 50.0%
GACCCCAAGGAATGACAATG+TGG - chr1_4:12475929-12475948 Msa0150800:intron 50.0%
! AGTCCCTAGAGTTGGTCATC+TGG - chr1_4:12477186-12477205 Msa0150800:intron 50.0%
GTGACCAGATGACCAACTCT+AGG + chr1_4:12477193-12477212 None:intergenic 50.0%
!! CTCCCTTTGGTTTGCAACAG+AGG + chr1_4:12477251-12477270 None:intergenic 50.0%
!!! AGATGTCGCAGCCACTTTTG+CGG + chr1_4:12477473-12477492 None:intergenic 50.0%
AGTGAACAGCGACACAATGG+AGG - chr1_4:12477498-12477517 Msa0150800:intron 50.0%
GTGAACAGCGACACAATGGA+GGG - chr1_4:12477499-12477518 Msa0150800:intron 50.0%
!! GGAGGGCATTGTATCTGCTA+TGG - chr1_4:12477516-12477535 Msa0150800:intron 50.0%
AACACGCTGCTGAGTCTGAA+TGG + chr1_4:12478142-12478161 None:intergenic 50.0%
TTGTAGCCGAGAAAGGGAAG+AGG - chr1_4:12478349-12478368 Msa0150800:intron 50.0%
!! CTTGGGTTGGATCATATGGG+CGG - chr1_4:12478426-12478445 Msa0150800:intron 50.0%
TGCTTTGCTTCAGTTGCAGC+AGG - chr1_4:12478488-12478507 Msa0150800:intron 50.0%
CAAGTTACCAGAATGGGCAC+TGG + chr1_4:12478604-12478623 None:intergenic 50.0%
CAGTGCCCATTCTGGTAACT+TGG - chr1_4:12478602-12478621 Msa0150800:intron 50.0%
! AGGAGGTCTGAAATCTGGTC+TGG - chr1_4:12478771-12478790 Msa0150800:intron 50.0%
TGGTCTGGTGAAGGGAGAAT+AGG - chr1_4:12478786-12478805 Msa0150800:CDS 50.0%
CAACCAGTGCAAACTTTCGG+CGG + chr1_4:12478889-12478908 None:intergenic 50.0%
! TAGGTGAAGCACCCACCTTG+CGG + chr1_4:12475479-12475498 None:intergenic 55.0%
CCATAGCTCCCCTTCTCCAT+AGG + chr1_4:12475554-12475573 None:intergenic 55.0%
CCTATGGAGAAGGGGAGCTA+TGG - chr1_4:12475551-12475570 Msa0150800:intron 55.0%
! CCACAACAGAGCACCCACAT+TGG + chr1_4:12475781-12475800 None:intergenic 55.0%
CCAATGTGGGTGCTCTGTTG+TGG - chr1_4:12475778-12475797 Msa0150800:intron 55.0%
TGTGGGTGCTCTGTTGTGGA+AGG - chr1_4:12475782-12475801 Msa0150800:intron 55.0%
GTCATCTGGTCACCCAAACG+AGG - chr1_4:12477200-12477219 Msa0150800:intron 55.0%
ATGGTCCAGGGTTCAAACCC+CGG - chr1_4:12477413-12477432 Msa0150800:intron 55.0%
AGATGCTGCGATTGCACGTC+TGG - chr1_4:12478167-12478186 Msa0150800:intron 55.0%
ATGAGACTGGCGGAACATCG+TGG - chr1_4:12478213-12478232 Msa0150800:intron 55.0%
TCTTCGTCCAGTGCCCATTC+TGG - chr1_4:12478594-12478613 Msa0150800:intron 55.0%
TTGCCGCCGAAAGTTTGCAC+TGG - chr1_4:12478883-12478902 Msa0150800:CDS 55.0%
TGCTAGCGAAACGACACCGG+AGG - chr1_4:12474506-12474525 Msa0150800:three_prime_UTR 60.0%
GCTAGCGAAACGACACCGGA+GGG - chr1_4:12474507-12474526 Msa0150800:three_prime_UTR 60.0%
GGTGGCCGGGGTTTGAACCC+TGG + chr1_4:12477421-12477440 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 12474184 12479277 12474184 ID=Msa0150800;Name=Msa0150800
chr1_4 mRNA 12474184 12479277 12474184 ID=Msa0150800-mRNA-1;Parent=Msa0150800;Name=Msa0150800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=161|1|1|1|1|1|2|630|280
chr1_4 exon 12474184 12475323 12474184 ID=Msa0150800-mRNA-1:exon:5048;Parent=Msa0150800-mRNA-1
chr1_4 exon 12478784 12479277 12478784 ID=Msa0150800-mRNA-1:exon:5047;Parent=Msa0150800-mRNA-1
chr1_4 five_prime_UTR 12479117 12479277 12479117 ID=Msa0150800-mRNA-1:five_prime_utr;Parent=Msa0150800-mRNA-1
chr1_4 CDS 12478784 12479116 12478784 ID=Msa0150800-mRNA-1:cds;Parent=Msa0150800-mRNA-1
chr1_4 CDS 12474814 12475323 12474814 ID=Msa0150800-mRNA-1:cds;Parent=Msa0150800-mRNA-1
chr1_4 three_prime_UTR 12474184 12474813 12474184 ID=Msa0150800-mRNA-1:three_prime_utr;Parent=Msa0150800-mRNA-1
Gene Sequence

>Msa0150800

ATGAAATGGAACACGCAAATGGAAGAAGTAGAAGCGATTCTCGAGAAAATCTGGGACTTACACGACAAACTCAGCGACGCTATTCATTCCATTTCACGATCTCATTTTCTCACTTCTGTCAAAACGCTTACGAATTCTGCGCATAACAAAAACGACGTTGTTGCTAGCGAAACGACACCGGAGGGTAATAACGGTAACGGTAACGGTTTTGTTTATGTGAAGGATTTTCGGCCGGTGAATGACGATGTTGATGATGCCGTTCATGAAGCGAAGAGTCTTAATGCTATAAGAACCGCGCTTGAGAATCTTGAAGACCAGCTCGAGTATTTTCATACCATTCAGACTCAGCAGCGTGTTGAGAGAGATGCTGCGATTGCACGTCTGGAACAGAGTAGACTTGTTCTTGCAATGAGACTGGCGGAACATCGTGGCAAAAAATATAAAGTCATTGAAGAAGCTCTTGCTTTTGTTGCAGATGTACATGATGCTAGCGGCCTTGTTTCACCTGAAGTTTTTGAACAACCAAAATGTGCAGATGAGAGTTTTGTAGCCGAGAAAGGGAAGAGGTCTAATATCCTCATCAATGTTTTTGTCTCAAGTTTCAATTTTGTGAAGAAATCTCTTGGGTTGGATCATATGGGCGGAATAGTAGGAAATGCTGCTCTGGTTGCCGTTAGTATGATTGCTTTGCTTCAGTTGCAGCAGGTAACTAATCATGAACATTCATTTAGGGAAGAAAATAGAGTTCACAGCAACAGAACTATGAGAAGAACAGCTCACTTGGAGAGTTCTTCGTCCAGTGCCCATTCTGGTAACTTGGATGTTTTTTTGGCTAGAGGTTAG

Protein sequence

>Msa0150800

MKWNTQMEEVEAILEKIWDLHDKLSDAIHSISRSHFLTSVKTLTNSAHNKNDVVASETTPEGNNGNGNGFVYVKDFRPVNDDVDDAVHEAKSLNAIRTALENLEDQLEYFHTIQTQQRVERDAAIARLEQSRLVLAMRLAEHRGKKYKVIEEALAFVADVHDASGLVSPEVFEQPKCADESFVAEKGKRSNILINVFVSSFNFVKKSLGLDHMGGIVGNAALVAVSMIALLQLQQVTNHEHSFREENRVHSNRTMRRTAHLESSSSSAHSGNLDVFLARG*