Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709450 | XP_024625327.1 | 93.952 | 463 | 20 | 3 | 1 | 458 | 1 | 460 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709450 | Q2HTF1 | 93.952 | 463 | 20 | 3 | 1 | 458 | 1 | 460 | 0.0 | 859 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0709450 | 0.824761 | 6.776170e-54 | -8.615850e-47 |
| Msa0669840 | Msa0709450 | 0.852082 | 5.828916e-61 | -8.615850e-47 |
| Msa0707220 | Msa0709450 | 0.805274 | 1.444594e-49 | -8.615850e-47 |
| Msa0709450 | Msa0711320 | 0.803991 | 2.676083e-49 | -8.615850e-47 |
| Msa0709450 | Msa0739470 | 0.814822 | 1.266525e-51 | -8.615850e-47 |
| Msa0709450 | Msa0739580 | 0.818625 | 1.778239e-52 | -8.615850e-47 |
| Msa0709450 | Msa0751890 | 0.810390 | 1.180238e-50 | -8.615850e-47 |
| Msa0709450 | Msa0752840 | 0.820504 | 6.624248e-53 | -8.615850e-47 |
| Msa0709450 | Msa0782230 | 0.809894 | 1.510051e-50 | -8.615850e-47 |
| Msa0709450 | Msa0819890 | 0.835027 | 2.131132e-56 | -8.615850e-47 |
| Msa0709450 | Msa0823400 | 0.805273 | 1.445574e-49 | -8.615850e-47 |
| Msa0709450 | Msa0831940 | 0.830176 | 3.402950e-55 | -8.615850e-47 |
| Msa0709450 | Msa0860160 | 0.850651 | 1.479824e-60 | -8.615850e-47 |
| Msa0709450 | Msa0860170 | 0.804550 | 2.046862e-49 | -8.615850e-47 |
| Msa0709450 | Msa0860280 | 0.807710 | 4.426067e-50 | -8.615850e-47 |
| Msa0709450 | Msa0898730 | 0.801817 | 7.527495e-49 | -8.615850e-47 |
| Msa0709450 | Msa0929870 | 0.809803 | 1.579365e-50 | -8.615850e-47 |
| Msa0709450 | Msa0941820 | 0.807548 | 4.791147e-50 | -8.615850e-47 |
| Msa0709450 | Msa0996270 | 0.810951 | 8.926184e-51 | -8.615850e-47 |
| Msa0709450 | Msa0999300 | 0.818858 | 1.574321e-52 | -8.615850e-47 |
| Msa0709450 | Msa1084520 | 0.902466 | 9.421362e-79 | -8.615850e-47 |
| Msa0709450 | Msa1125810 | 0.885538 | 7.458000e-72 | -8.615850e-47 |
| Msa0709450 | Msa1146740 | 0.812377 | 4.372223e-51 | -8.615850e-47 |
| Msa0709450 | Msa1171310 | 0.873515 | 1.385618e-67 | -8.615850e-47 |
| Msa0709450 | Msa1201110 | 0.817042 | 4.048031e-52 | -8.615850e-47 |
| Msa0709450 | Msa1201160 | 0.832639 | 8.428440e-56 | -8.615850e-47 |
| Msa0709450 | Msa1228190 | 0.805487 | 1.303531e-49 | -8.615850e-47 |
| Msa0709450 | Msa1294290 | 0.809941 | 1.475533e-50 | -8.615850e-47 |
| Msa0709450 | Msa1305510 | 0.806664 | 7.370810e-50 | -8.615850e-47 |
| Msa0709450 | Msa1378870 | 0.829516 | 4.927532e-55 | -8.615850e-47 |
| Msa0709450 | Msa1406780 | 0.833194 | 6.133434e-56 | -8.615850e-47 |
| Msa0709450 | Msa1421550 | 0.803646 | 3.156585e-49 | -8.615850e-47 |
| Msa0709450 | Msa1431850 | 0.826559 | 2.538214e-54 | -8.615850e-47 |
| Msa0124130 | Msa0709450 | 0.828682 | 7.848495e-55 | -8.615850e-47 |
| Msa0149140 | Msa0709450 | 0.855575 | 5.754551e-62 | -8.615850e-47 |
| Msa0152500 | Msa0709450 | 0.808221 | 3.444802e-50 | -8.615850e-47 |
| Msa0156250 | Msa0709450 | 0.810353 | 1.202419e-50 | -8.615850e-47 |
| Msa0212150 | Msa0709450 | 0.805263 | 1.452621e-49 | -8.615850e-47 |
| Msa0406000 | Msa0709450 | 0.840588 | 7.944168e-58 | -8.615850e-47 |
| Msa0424330 | Msa0709450 | 0.804050 | 2.602369e-49 | -8.615850e-47 |
| Msa0424340 | Msa0709450 | 0.840879 | 6.664048e-58 | -8.615850e-47 |
| Msa0424350 | Msa0709450 | 0.823333 | 1.465298e-53 | -8.615850e-47 |
| Msa0441590 | Msa0709450 | 0.801047 | 1.082626e-48 | -8.615850e-47 |
| Msa0451400 | Msa0709450 | 0.841741 | 3.952561e-58 | -8.615850e-47 |
| Msa0252630 | Msa0709450 | 0.819516 | 1.114775e-52 | -8.615850e-47 |
| Msa0306120 | Msa0709450 | 0.813805 | 2.125022e-51 | -8.615850e-47 |
| Msa0333700 | Msa0709450 | 0.829598 | 4.705736e-55 | -8.615850e-47 |
| Msa0351770 | Msa0709450 | 0.830139 | 3.474181e-55 | -8.615850e-47 |
| Msa0359250 | Msa0709450 | 0.830197 | 3.363706e-55 | -8.615850e-47 |
| Msa0492190 | Msa0709450 | 0.834920 | 2.267021e-56 | -8.615850e-47 |
| Msa0515950 | Msa0709450 | 0.803719 | 3.048191e-49 | -8.615850e-47 |
| Msa0591790 | Msa0709450 | 0.800142 | 1.655557e-48 | -8.615850e-47 |
| Msa0594090 | Msa0709450 | 0.826869 | 2.140250e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709450 | MtrunA17_Chr7g0266601 | 92.453 | 318 | 16 | 3 | 1 | 313 | 1 | 315 | 0.0 | 551 |
| Msa0709450 | MtrunA17_Chr1g0178441 | 51.542 | 454 | 201 | 8 | 9 | 451 | 18 | 463 | 1.15e-160 | 462 |
| Msa0709450 | MtrunA17_Chr7g0266591 | 95.395 | 152 | 7 | 0 | 307 | 458 | 6 | 157 | 1.40e-106 | 313 |
| Msa0709450 | MtrunA17_Chr1g0178421 | 55.987 | 309 | 123 | 5 | 5 | 309 | 3 | 302 | 1.85e-103 | 310 |
| Msa0709450 | MtrunA17_Chr1g0178431 | 78.261 | 138 | 28 | 1 | 307 | 442 | 6 | 143 | 4.27e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709450 | AT3G52610.1 | 46.055 | 469 | 222 | 12 | 9 | 454 | 13 | 473 | 8.90e-138 | 404 |
Find 100 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTCTCAAATCACAATTT+TGG | 0.217496 | 5_1:+617178 | Msa0709450:CDS |
| TCATGGTTTGGGACCATCTA+TGG | 0.223620 | 5_1:+619029 | Msa0709450:CDS |
| ATGGGGTGTGCTTCGGTTCA+TGG | 0.237066 | 5_1:+619012 | Msa0709450:CDS |
| TGTGCTTCGGTTCATGGTTT+GGG | 0.291835 | 5_1:+619018 | Msa0709450:CDS |
| AATAACTGCAGCGGGATTAA+TGG | 0.304334 | 5_1:+617078 | Msa0709450:CDS |
| GTGTGCTTCGGTTCATGGTT+TGG | 0.307756 | 5_1:+619017 | Msa0709450:CDS |
| GTCCTCAAACACCGACATTA+TGG | 0.308407 | 5_1:-618935 | None:intergenic |
| GCGATTGAGGATCTTGTTCC+TGG | 0.311297 | 5_1:+616633 | Msa0709450:CDS |
| CGACATTATGGATGTTCTTA+AGG | 0.349557 | 5_1:-618923 | None:intergenic |
| TGTTAATAAGCTCTTGCATT+TGG | 0.357546 | 5_1:-619125 | None:intergenic |
| GCAAAGGGAAGAAACATATC+TGG | 0.359281 | 5_1:+616658 | Msa0709450:CDS |
| TGAAAACGAGAAATATCAAT+AGG | 0.367993 | 5_1:-616171 | None:intergenic |
| GAACTAGCCAAGAGGACTTA+TGG | 0.372116 | 5_1:+618799 | Msa0709450:CDS |
| ATCTAGCCTTCCATCCCTTA+TGG | 0.374376 | 5_1:-619064 | None:intergenic |
| ATCCATAATGTCGGTGTTTG+AGG | 0.408361 | 5_1:+618933 | Msa0709450:CDS |
| ACCAGGGTTCTCTATGGCCT+TGG | 0.408629 | 5_1:-618890 | None:intergenic |
| AGTAAACCTAAAAGAATTAA+CGG | 0.410580 | 5_1:-616709 | None:intergenic |
| ATCCATCCCCGTTGCACTCT+AGG | 0.410966 | 5_1:+619100 | Msa0709450:CDS |
| TTTGGTCCCTAGAGTGCAAC+GGG | 0.411997 | 5_1:-619107 | None:intergenic |
| TACGATCTTGCCACGTGTTA+CGG | 0.414492 | 5_1:-616413 | None:intergenic |
| CTTATCATTGTTCTTAGAGT+TGG | 0.418380 | 5_1:-618830 | None:intergenic |
| TTATTACCCTCACTGATTGC+CGG | 0.431014 | 5_1:+617140 | Msa0709450:CDS |
| TGTCAAACCAGGGTTCTCTA+TGG | 0.431401 | 5_1:-618896 | None:intergenic |
| CACTCCGTTGCAACAAATCA+TGG | 0.432383 | 5_1:+616377 | Msa0709450:CDS |
| TGTTGAGGATGTTGTTCCTT+TGG | 0.434930 | 5_1:+616611 | Msa0709450:CDS |
| CTTAAGGATGATGTCAAACC+AGG | 0.439362 | 5_1:-618907 | None:intergenic |
| ATGAAGGCTATTCTTATTGA+AGG | 0.442750 | 5_1:+619150 | Msa0709450:CDS |
| AAAGCCATTCGTGGTGGCAC+TGG | 0.454895 | 5_1:+616117 | Msa0709450:CDS |
| TGTTGTTCCTTTGGCGATTG+AGG | 0.458789 | 5_1:+616620 | Msa0709450:CDS |
| AGGAGTGTGGGATGTAAGAA+AGG | 0.459967 | 5_1:-616289 | None:intergenic |
| CATGGTTTGGGACCATCTAT+GGG | 0.463005 | 5_1:+619030 | Msa0709450:CDS |
| GGACTACATGGGGTGTGCTT+CGG | 0.472358 | 5_1:+619005 | Msa0709450:CDS |
| AAGAATAGTTCTAAGAAGTA+CGG | 0.474242 | 5_1:+617115 | Msa0709450:CDS |
| TCAACAACCACGTGATCAAA+GGG | 0.475334 | 5_1:+618761 | Msa0709450:CDS |
| TCCATCCCCGTTGCACTCTA+GGG | 0.489654 | 5_1:+619101 | Msa0709450:CDS |
| AAATGCTCCATAAGTCCTCT+TGG | 0.502139 | 5_1:-618806 | None:intergenic |
| TGTTTCTTCCCTTTGCGACC+AGG | 0.508762 | 5_1:-616651 | None:intergenic |
| ATGTCGACGGTTGAAACAAA+AGG | 0.509382 | 5_1:+616060 | Msa0709450:CDS |
| TCCCTAGAGTGCAACGGGGA+TGG | 0.509671 | 5_1:-619102 | None:intergenic |
| TTCAGGGTTGTAAGCAGAGT+AGG | 0.515071 | 5_1:+617038 | Msa0709450:intron |
| ATCTTGTTCCTGGTCGCAAA+GGG | 0.516393 | 5_1:+616643 | Msa0709450:CDS |
| CTCAACAACCACGTGATCAA+AGG | 0.519923 | 5_1:+618760 | Msa0709450:CDS |
| GCAACAAGAGGTTGGAGTAG+AGG | 0.526477 | 5_1:+618984 | Msa0709450:CDS |
| GGAGAATGTTGTTGCTGTTG+AGG | 0.528626 | 5_1:+616596 | Msa0709450:CDS |
| CTTTGATCACGTGGTTGTTG+AGG | 0.530369 | 5_1:-618759 | None:intergenic |
| AGAATAGTTCTAAGAAGTAC+GGG | 0.531546 | 5_1:+617116 | Msa0709450:CDS |
| AATGCCAGTGCCACCACGAA+TGG | 0.537676 | 5_1:-616121 | None:intergenic |
| TTGACACCATAAGGGATGGA+AGG | 0.538475 | 5_1:+619058 | Msa0709450:CDS |
| AGAGCTTATTAACAAGATGA+AGG | 0.539515 | 5_1:+619134 | Msa0709450:CDS |
| GATCTTGTTCCTGGTCGCAA+AGG | 0.543662 | 5_1:+616642 | Msa0709450:CDS |
| TATGGCCTTGGACATAAGAA+AGG | 0.543788 | 5_1:-618878 | None:intergenic |
| TGTGGAGCAATAACTGCAGC+GGG | 0.545669 | 5_1:+617070 | Msa0709450:CDS |
| AAGGCTATTCTTATTGAAGG+TGG | 0.558507 | 5_1:+619153 | Msa0709450:CDS |
| GAAACAAAAGGTCGTAATGT+TGG | 0.558743 | 5_1:+616072 | Msa0709450:CDS |
| AAAGGAGAAAATAGTGTCTG+TGG | 0.563282 | 5_1:-616271 | None:intergenic |
| CATGACCTTTCTTATGTCCA+AGG | 0.571473 | 5_1:+618873 | Msa0709450:CDS |
| AATTGTGATTTGAGAGAGGT+GGG | 0.571654 | 5_1:-617174 | None:intergenic |
| TGTTCCATGATTTGTTGCAA+CGG | 0.573358 | 5_1:-616381 | None:intergenic |
| GGTTGGAGTAGAGGACTACA+TGG | 0.579061 | 5_1:+618993 | Msa0709450:CDS |
| GGCAAGATGCAACAAGAGGT+TGG | 0.579461 | 5_1:+618976 | Msa0709450:CDS |
| GAGGACACGGTGGTTGATGA+CGG | 0.580211 | 5_1:+618952 | Msa0709450:CDS |
| AAATTGTGATTTGAGAGAGG+TGG | 0.580439 | 5_1:-617175 | None:intergenic |
| TAGCTTAAGTATTATGTCGA+CGG | 0.581330 | 5_1:+616047 | None:intergenic |
| CAAAGGGAAGAAACATATCT+GGG | 0.581978 | 5_1:+616659 | Msa0709450:CDS |
| CCAAAATTGTGATTTGAGAG+AGG | 0.582441 | 5_1:-617178 | None:intergenic |
| TGAGAGAGGTGGGTCAAGAG+TGG | 0.586797 | 5_1:-617164 | None:intergenic |
| AGCTGGTGCAAAGCCATTCG+TGG | 0.588805 | 5_1:+616108 | Msa0709450:CDS |
| GATCACGTGGTTGTTGAGGA+TGG | 0.593465 | 5_1:-618755 | None:intergenic |
| AAACATGTCAGTATCAATAC+CGG | 0.597857 | 5_1:-616436 | None:intergenic |
| ACAAAAGGTCGTAATGTTGG+TGG | 0.598123 | 5_1:+616075 | Msa0709450:CDS |
| TTGGTGGCACAGAATGTAGC+TGG | 0.609381 | 5_1:+616091 | Msa0709450:CDS |
| CTTAAGAACATCCATAATGT+CGG | 0.610419 | 5_1:+618924 | Msa0709450:CDS |
| AAATGCTAGGTCTTCACAAG+TGG | 0.613957 | 5_1:+616755 | Msa0709450:CDS |
| AATGTCGGTGTTTGAGGACA+CGG | 0.619648 | 5_1:+618939 | Msa0709450:CDS |
| ATTTGGTCCCTAGAGTGCAA+CGG | 0.621651 | 5_1:-619108 | None:intergenic |
| ACAAGATCCTCAATCGCCAA+AGG | 0.623888 | 5_1:-616627 | None:intergenic |
| AGTGGACCGGCAATCAGTGA+GGG | 0.635780 | 5_1:-617146 | None:intergenic |
| GTGTGGAGCAATAACTGCAG+CGG | 0.636382 | 5_1:+617069 | Msa0709450:CDS |
| AACACGTGGCAAGATCGTAC+CGG | 0.650719 | 5_1:+616417 | Msa0709450:CDS |
| AAGAAACATATCTGGGAGCG+TGG | 0.650935 | 5_1:+616666 | Msa0709450:CDS |
| CAATCAAACTGATACCAAGA+GGG | 0.655063 | 5_1:+616791 | Msa0709450:CDS |
| TCCAAGGCCATAGAGAACCC+TGG | 0.655783 | 5_1:+618889 | Msa0709450:CDS |
| AACAACCACGTGATCAAAGG+GGG | 0.655827 | 5_1:+618763 | Msa0709450:CDS |
| CGGCGGCAAGATGCAACAAG+AGG | 0.657442 | 5_1:+618972 | Msa0709450:CDS |
| GTTGGAGTAGAGGACTACAT+GGG | 0.661686 | 5_1:+618994 | Msa0709450:CDS |
| TCAATCAAACTGATACCAAG+AGG | 0.661853 | 5_1:+616790 | Msa0709450:CDS |
| GCTTGTGTTGATGAAAGATG+AGG | 0.663457 | 5_1:+616566 | Msa0709450:CDS |
| GAGTGGACCGGCAATCAGTG+AGG | 0.664520 | 5_1:-617147 | None:intergenic |
| CAGAGTAGGATTAAGCTGTG+TGG | 0.667291 | 5_1:+617052 | Msa0709450:CDS |
| GAGGTGGGTCAAGAGTGGAC+CGG | 0.670737 | 5_1:-617159 | None:intergenic |
| TTAAGGATGATGTCAAACCA+GGG | 0.675705 | 5_1:-618906 | None:intergenic |
| ATGAACTGAACCGTAACACG+TGG | 0.676263 | 5_1:+616403 | Msa0709450:CDS |
| TGGTGCAAAGCCATTCGTGG+TGG | 0.684258 | 5_1:+616111 | Msa0709450:CDS |
| GTCTTTGGGAACTAGCCAAG+AGG | 0.697035 | 5_1:+618791 | Msa0709450:CDS |
| CAACAACCACGTGATCAAAG+GGG | 0.713289 | 5_1:+618762 | Msa0709450:CDS |
| TTGGAGTAGAGGACTACATG+GGG | 0.733565 | 5_1:+618995 | Msa0709450:CDS |
| GACACGGTGGTTGATGACGG+CGG | 0.738900 | 5_1:+618955 | Msa0709450:CDS |
| AGCATGCGATAGAACAACTG+CGG | 0.738953 | 5_1:+616524 | Msa0709450:CDS |
| GTCGGTGTTTGAGGACACGG+TGG | 0.755614 | 5_1:+618942 | Msa0709450:CDS |
| TTGGTCCCTAGAGTGCAACG+GGG | 0.825259 | 5_1:-619106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr5_1:618361-618380 | Msa0709450:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr5_1:618362-618381 | Msa0709450:intron | 10.0% |
| !! | CATACAAATATCAAATTAAT+TGG | - | chr5_1:616999-617018 | None:intergenic | 15.0% |
| !!! | ACTTTTGAATGATTTTTTTA+AGG | + | chr5_1:617468-617487 | Msa0709450:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr5_1:618438-618457 | Msa0709450:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr5_1:618476-618495 | None:intergenic | 15.0% |
| !! | AAACTCTTTAAATTAATACT+CGG | - | chr5_1:618514-618533 | None:intergenic | 15.0% |
| !!! | TTAAAAGTTTTTCTTTTTGA+AGG | + | chr5_1:618558-618577 | Msa0709450:intron | 15.0% |
| !! | AGTAAACCTAAAAGAATTAA+CGG | - | chr5_1:616712-616731 | None:intergenic | 20.0% |
| !! | TTAATGATACAAAAAATGCT+AGG | + | chr5_1:616742-616761 | Msa0709450:CDS | 20.0% |
| !! | ACCAAACATAAAATAGATTA+GGG | - | chr5_1:616832-616851 | None:intergenic | 20.0% |
| !! | AACCAAACATAAAATAGATT+AGG | - | chr5_1:616833-616852 | None:intergenic | 20.0% |
| !!! | TAATCTATTTTATGTTTGGT+TGG | + | chr5_1:616832-616851 | Msa0709450:intron | 20.0% |
| !!! | CTCATATATATGTTTGATTT+TGG | - | chr5_1:616955-616974 | None:intergenic | 20.0% |
| !! | TGAAATGAAATTTGTATTTC+AGG | + | chr5_1:617021-617040 | Msa0709450:intron | 20.0% |
| !! | GAAATGAAATTTGTATTTCA+GGG | + | chr5_1:617022-617041 | Msa0709450:intron | 20.0% |
| !! | TAGAACCATTAATATGTATA+TGG | + | chr5_1:617289-617308 | Msa0709450:intron | 20.0% |
| !! | CACTAACAAAAAAAAAAAGA+GGG | + | chr5_1:617739-617758 | Msa0709450:intron | 20.0% |
| !! | AAATGTTAACAAATGTCTAT+AGG | - | chr5_1:617877-617896 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr5_1:617999-618018 | Msa0709450:intron | 20.0% |
| !! | TAAATTAATAATGTCAGGAT+CGG | + | chr5_1:618004-618023 | Msa0709450:intron | 20.0% |
| !! | ACTATACATACTAAACAAAA+AGG | + | chr5_1:618106-618125 | Msa0709450:intron | 20.0% |
| !!! | AAAAAGGCATATTTATGATA+CGG | + | chr5_1:618122-618141 | Msa0709450:intron | 20.0% |
| !! | GATGATTTAGAAATATTGAT+AGG | + | chr5_1:618696-618715 | Msa0709450:intron | 20.0% |
| ! | TGAAAACGAGAAATATCAAT+AGG | - | chr5_1:616174-616193 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGCAAGAATGT+TGG | - | chr5_1:616352-616371 | None:intergenic | 25.0% |
| !!! | AAGAATAGTTCTAAGAAGTA+CGG | + | chr5_1:617115-617134 | Msa0709450:CDS | 25.0% |
| !! | GAGAACAGAAAATTGATTTA+TGG | + | chr5_1:617242-617261 | Msa0709450:intron | 25.0% |
| ! | CACTTCCATATACATATTAA+TGG | - | chr5_1:617297-617316 | None:intergenic | 25.0% |
| ! | CATTAATATGTATATGGAAG+TGG | + | chr5_1:617295-617314 | Msa0709450:intron | 25.0% |
| ! | AATAAGGAATGAATGTTGAT+TGG | - | chr5_1:617344-617363 | None:intergenic | 25.0% |
| !! | AGTTTTTCTTTTCACGAATA+AGG | - | chr5_1:617360-617379 | None:intergenic | 25.0% |
| !!! | CCTCTTTTTTTTTTTGTTAG+TGG | - | chr5_1:617741-617760 | None:intergenic | 25.0% |
| ! | CCACTAACAAAAAAAAAAAG+AGG | + | chr5_1:617738-617757 | Msa0709450:intron | 25.0% |
| ! | AAACGACTCTTTCAATTTAA+TGG | - | chr5_1:617799-617818 | None:intergenic | 25.0% |
| ! | ATTTATAGAGTTTCTACTGT+AGG | - | chr5_1:617989-618008 | None:intergenic | 25.0% |
| !! | AGAGATCCCTTTATAATTTT+CGG | - | chr5_1:618389-618408 | None:intergenic | 25.0% |
| !!! | AAGTTTTTCTTTTTGAAGGA+AGG | + | chr5_1:618562-618581 | Msa0709450:intron | 25.0% |
| !! | ATTTTGTAGTTTGTGAAGTG+AGG | - | chr5_1:616199-616218 | None:intergenic | 30.0% |
| AAACATGTCAGTATCAATAC+CGG | - | chr5_1:616439-616458 | None:intergenic | 30.0% | |
| TATGCCTGATGAAAAAACAT+GGG | + | chr5_1:616476-616495 | Msa0709450:CDS | 30.0% | |
| ! | GTTACTCCGTTAATTCTTTT+AGG | + | chr5_1:616703-616722 | Msa0709450:CDS | 30.0% |
| !! | TTTTACATCTAAAACCCTCT+TGG | - | chr5_1:616808-616827 | None:intergenic | 30.0% |
| ! | GCCCTAATCTATTTTATGTT+TGG | + | chr5_1:616828-616847 | Msa0709450:intron | 30.0% |
| ! | ATGCAGTTTTTGCAAAATCA+TGG | - | chr5_1:616895-616914 | None:intergenic | 30.0% |
| !! | AGAATAGTTCTAAGAAGTAC+GGG | + | chr5_1:617116-617135 | Msa0709450:CDS | 30.0% |
| ! | CATTTAAGATGAGATAGAGA+GGG | - | chr5_1:617574-617593 | None:intergenic | 30.0% |
| ! | TCATTTAAGATGAGATAGAG+AGG | - | chr5_1:617575-617594 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTAGTGGATGAAG+TGG | - | chr5_1:617732-617751 | None:intergenic | 30.0% |
| TATTTATGATACGGTGTCTT+TGG | + | chr5_1:618131-618150 | Msa0709450:intron | 30.0% | |
| !! | CTTTAAAGTTCAAGTCTGTT+TGG | - | chr5_1:618275-618294 | None:intergenic | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | + | chr5_1:618380-618399 | Msa0709450:intron | 30.0% | |
| GTGCATATGTTTCAATGTAT+AGG | + | chr5_1:618718-618737 | Msa0709450:intron | 30.0% | |
| CTTATCATTGTTCTTAGAGT+TGG | - | chr5_1:618833-618852 | None:intergenic | 30.0% | |
| CTTAAGAACATCCATAATGT+CGG | + | chr5_1:618924-618943 | Msa0709450:CDS | 30.0% | |
| TGTTAATAAGCTCTTGCATT+TGG | - | chr5_1:619128-619147 | None:intergenic | 30.0% | |
| AGAGCTTATTAACAAGATGA+AGG | + | chr5_1:619134-619153 | Msa0709450:CDS | 30.0% | |
| ATGAAGGCTATTCTTATTGA+AGG | + | chr5_1:619150-619169 | Msa0709450:CDS | 30.0% | |
| GAAACAAAAGGTCGTAATGT+TGG | + | chr5_1:616072-616091 | Msa0709450:CDS | 35.0% | |
| ! | TTTTGATCTGAGGATAGGAT+GGG | - | chr5_1:616223-616242 | None:intergenic | 35.0% |
| ! | ATGATGATGATGATGTGTTG+TGG | - | chr5_1:616248-616267 | None:intergenic | 35.0% |
| AAAGGAGAAAATAGTGTCTG+TGG | - | chr5_1:616274-616293 | None:intergenic | 35.0% | |
| !! | GATTTTGATGAAAGGAGTGT+GGG | - | chr5_1:616304-616323 | None:intergenic | 35.0% |
| !! | TGAGACTCGATTTTGATGAA+AGG | - | chr5_1:616312-616331 | None:intergenic | 35.0% |
| !! | TGTTCCATGATTTGTTGCAA+CGG | - | chr5_1:616384-616403 | None:intergenic | 35.0% |
| CTATGCCTGATGAAAAAACA+TGG | + | chr5_1:616475-616494 | Msa0709450:CDS | 35.0% | |
| GATGAAAGATGAGGAAAAAG+AGG | + | chr5_1:616575-616594 | Msa0709450:CDS | 35.0% | |
| CAAAGGGAAGAAACATATCT+GGG | + | chr5_1:616659-616678 | Msa0709450:CDS | 35.0% | |
| TCAATCAAACTGATACCAAG+AGG | + | chr5_1:616790-616809 | Msa0709450:CDS | 35.0% | |
| CAATCAAACTGATACCAAGA+GGG | + | chr5_1:616791-616810 | Msa0709450:CDS | 35.0% | |
| CATCGTACAAGATTAAGTAC+CGG | + | chr5_1:616863-616882 | Msa0709450:intron | 35.0% | |
| ATCGTACAAGATTAAGTACC+GGG | + | chr5_1:616864-616883 | Msa0709450:intron | 35.0% | |
| AATTGTGATTTGAGAGAGGT+GGG | - | chr5_1:617177-617196 | None:intergenic | 35.0% | |
| AAATTGTGATTTGAGAGAGG+TGG | - | chr5_1:617178-617197 | None:intergenic | 35.0% | |
| CCAAAATTGTGATTTGAGAG+AGG | - | chr5_1:617181-617200 | None:intergenic | 35.0% | |
| ! | CCTCTCTCAAATCACAATTT+TGG | + | chr5_1:617178-617197 | Msa0709450:CDS | 35.0% |
| TATGTATATGGAAGTGGAAG+TGG | + | chr5_1:617301-617320 | Msa0709450:intron | 35.0% | |
| ! | AGGAATGAATGTTGATTGGT+CGG | - | chr5_1:617340-617359 | None:intergenic | 35.0% |
| ATCAATTTCCTTGATACACG+AGG | + | chr5_1:617933-617952 | Msa0709450:intron | 35.0% | |
| AAATACAACACCTGAGCTAT+TGG | + | chr5_1:618221-618240 | Msa0709450:intron | 35.0% | |
| CTTGGGACCGAAAATTATAA+AGG | + | chr5_1:618379-618398 | Msa0709450:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr5_1:618448-618467 | Msa0709450:intron | 35.0% |
| ! | TGATAAGCACTTTTCAGACA+TGG | + | chr5_1:618846-618865 | Msa0709450:CDS | 35.0% |
| TTAAGGATGATGTCAAACCA+GGG | - | chr5_1:618909-618928 | None:intergenic | 35.0% | |
| CGACATTATGGATGTTCTTA+AGG | - | chr5_1:618926-618945 | None:intergenic | 35.0% | |
| GTGTCAAAAATACCCATAGA+TGG | - | chr5_1:619045-619064 | None:intergenic | 35.0% | |
| !! | TGGGTATTTTTGACACCATA+AGG | + | chr5_1:619049-619068 | Msa0709450:CDS | 35.0% |
| !! | GGGTATTTTTGACACCATAA+GGG | + | chr5_1:619050-619069 | Msa0709450:CDS | 35.0% |
| ! | ATTTTTGACACCATAAGGGA+TGG | + | chr5_1:619054-619073 | Msa0709450:CDS | 35.0% |
| AAGGCTATTCTTATTGAAGG+TGG | + | chr5_1:619153-619172 | Msa0709450:CDS | 35.0% | |
| ATGTCGACGGTTGAAACAAA+AGG | + | chr5_1:616060-616079 | Msa0709450:CDS | 40.0% | |
| ACAAAAGGTCGTAATGTTGG+TGG | + | chr5_1:616075-616094 | Msa0709450:CDS | 40.0% | |
| !! | GTTTTGATCTGAGGATAGGA+TGG | - | chr5_1:616224-616243 | None:intergenic | 40.0% |
| !! | TGGAGTTTTGATCTGAGGAT+AGG | - | chr5_1:616228-616247 | None:intergenic | 40.0% |
| !! | TGTTGTGGAGTTTTGATCTG+AGG | - | chr5_1:616233-616252 | None:intergenic | 40.0% |
| !! | CGATTTTGATGAAAGGAGTG+TGG | - | chr5_1:616305-616324 | None:intergenic | 40.0% |
| !!! | ACCACCCATGTTTTTTCATC+AGG | - | chr5_1:616483-616502 | None:intergenic | 40.0% |
| TGATGAAAAAACATGGGTGG+TGG | + | chr5_1:616482-616501 | Msa0709450:CDS | 40.0% | |
| ! | GCTTGTGTTGATGAAAGATG+AGG | + | chr5_1:616566-616585 | Msa0709450:CDS | 40.0% |
| TGTTGAGGATGTTGTTCCTT+TGG | + | chr5_1:616611-616630 | Msa0709450:CDS | 40.0% | |
| GCAAAGGGAAGAAACATATC+TGG | + | chr5_1:616658-616677 | Msa0709450:CDS | 40.0% | |
| AAATGCTAGGTCTTCACAAG+TGG | + | chr5_1:616755-616774 | Msa0709450:CDS | 40.0% | |
| TGCAAAATCATGGTGATTCC+CGG | - | chr5_1:616885-616904 | None:intergenic | 40.0% | |
| AATAACTGCAGCGGGATTAA+TGG | + | chr5_1:617078-617097 | Msa0709450:CDS | 40.0% | |
| ! | TTATTACCCTCACTGATTGC+CGG | + | chr5_1:617140-617159 | Msa0709450:CDS | 40.0% |
| AGAAAAACTAACTCTGCAGC+TGG | + | chr5_1:617371-617390 | Msa0709450:intron | 40.0% | |
| TAGAACCTTACAATTGCGTG+CGG | + | chr5_1:617691-617710 | Msa0709450:intron | 40.0% | |
| TAAATCCGCACGCAATTGTA+AGG | - | chr5_1:617699-617718 | None:intergenic | 40.0% | |
| CAAAGTAACCTCGTGTATCA+AGG | - | chr5_1:617944-617963 | None:intergenic | 40.0% | |
| CTTGATACACGAGGTTACTT+TGG | + | chr5_1:617942-617961 | Msa0709450:intron | 40.0% | |
| CTTATTGCATCCAATAGCTC+AGG | - | chr5_1:618234-618253 | None:intergenic | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr5_1:618449-618468 | Msa0709450:intron | 40.0% |
| TCAACAACCACGTGATCAAA+GGG | + | chr5_1:618761-618780 | Msa0709450:CDS | 40.0% | |
| AAATGCTCCATAAGTCCTCT+TGG | - | chr5_1:618809-618828 | None:intergenic | 40.0% | |
| CATGACCTTTCTTATGTCCA+AGG | + | chr5_1:618873-618892 | Msa0709450:CDS | 40.0% | |
| ! | TATGGCCTTGGACATAAGAA+AGG | - | chr5_1:618881-618900 | None:intergenic | 40.0% |
| CTTAAGGATGATGTCAAACC+AGG | - | chr5_1:618910-618929 | None:intergenic | 40.0% | |
| ! | ATCCATAATGTCGGTGTTTG+AGG | + | chr5_1:618933-618952 | Msa0709450:CDS | 40.0% |
| TGAAGGTGGAAAAACATACG+AGG | + | chr5_1:619167-619186 | Msa0709450:CDS | 40.0% | |
| ! | AGGAGTGTGGGATGTAAGAA+AGG | - | chr5_1:616292-616311 | None:intergenic | 45.0% |
| CACTCCGTTGCAACAAATCA+TGG | + | chr5_1:616377-616396 | Msa0709450:CDS | 45.0% | |
| ATGAACTGAACCGTAACACG+TGG | + | chr5_1:616403-616422 | Msa0709450:CDS | 45.0% | |
| TACGATCTTGCCACGTGTTA+CGG | - | chr5_1:616416-616435 | None:intergenic | 45.0% | |
| GCCTGATGAAAAAACATGGG+TGG | + | chr5_1:616479-616498 | Msa0709450:CDS | 45.0% | |
| AGCATGCGATAGAACAACTG+CGG | + | chr5_1:616524-616543 | Msa0709450:CDS | 45.0% | |
| ! | GGAGAATGTTGTTGCTGTTG+AGG | + | chr5_1:616596-616615 | Msa0709450:CDS | 45.0% |
| TGTTGTTCCTTTGGCGATTG+AGG | + | chr5_1:616620-616639 | Msa0709450:CDS | 45.0% | |
| ACAAGATCCTCAATCGCCAA+AGG | - | chr5_1:616630-616649 | None:intergenic | 45.0% | |
| ATCTTGTTCCTGGTCGCAAA+GGG | + | chr5_1:616643-616662 | Msa0709450:CDS | 45.0% | |
| AAGAAACATATCTGGGAGCG+TGG | + | chr5_1:616666-616685 | Msa0709450:CDS | 45.0% | |
| TTCAGGGTTGTAAGCAGAGT+AGG | + | chr5_1:617038-617057 | Msa0709450:intron | 45.0% | |
| CAGAGTAGGATTAAGCTGTG+TGG | + | chr5_1:617052-617071 | Msa0709450:CDS | 45.0% | |
| GCAAGCAAAACTTTGCGTAC+AGG | + | chr5_1:617426-617445 | Msa0709450:intron | 45.0% | |
| !! | TTCGCGAAAGGAAGCACTTA+TGG | + | chr5_1:618161-618180 | Msa0709450:intron | 45.0% |
| CTTTGATCACGTGGTTGTTG+AGG | - | chr5_1:618762-618781 | None:intergenic | 45.0% | |
| CTCAACAACCACGTGATCAA+AGG | + | chr5_1:618760-618779 | Msa0709450:CDS | 45.0% | |
| CAACAACCACGTGATCAAAG+GGG | + | chr5_1:618762-618781 | Msa0709450:CDS | 45.0% | |
| AACAACCACGTGATCAAAGG+GGG | + | chr5_1:618763-618782 | Msa0709450:CDS | 45.0% | |
| TCAAAGGGGGAGAAAGTCTT+TGG | + | chr5_1:618776-618795 | Msa0709450:CDS | 45.0% | |
| CAAAGGGGGAGAAAGTCTTT+GGG | + | chr5_1:618777-618796 | Msa0709450:CDS | 45.0% | |
| GAACTAGCCAAGAGGACTTA+TGG | + | chr5_1:618799-618818 | Msa0709450:CDS | 45.0% | |
| TGTCAAACCAGGGTTCTCTA+TGG | - | chr5_1:618899-618918 | None:intergenic | 45.0% | |
| GTCCTCAAACACCGACATTA+TGG | - | chr5_1:618938-618957 | None:intergenic | 45.0% | |
| ! | AATGTCGGTGTTTGAGGACA+CGG | + | chr5_1:618939-618958 | Msa0709450:CDS | 45.0% |
| GTTGGAGTAGAGGACTACAT+GGG | + | chr5_1:618994-619013 | Msa0709450:CDS | 45.0% | |
| TTGGAGTAGAGGACTACATG+GGG | + | chr5_1:618995-619014 | Msa0709450:CDS | 45.0% | |
| TGTGCTTCGGTTCATGGTTT+GGG | + | chr5_1:619018-619037 | Msa0709450:CDS | 45.0% | |
| ! | TCATGGTTTGGGACCATCTA+TGG | + | chr5_1:619029-619048 | Msa0709450:CDS | 45.0% |
| ! | CATGGTTTGGGACCATCTAT+GGG | + | chr5_1:619030-619049 | Msa0709450:CDS | 45.0% |
| TTGACACCATAAGGGATGGA+AGG | + | chr5_1:619058-619077 | Msa0709450:CDS | 45.0% | |
| ! | ATCTAGCCTTCCATCCCTTA+TGG | - | chr5_1:619067-619086 | None:intergenic | 45.0% |
| ATTTGGTCCCTAGAGTGCAA+CGG | - | chr5_1:619111-619130 | None:intergenic | 45.0% | |
| ! | TTGGTGGCACAGAATGTAGC+TGG | + | chr5_1:616091-616110 | Msa0709450:CDS | 50.0% |
| AACACGTGGCAAGATCGTAC+CGG | + | chr5_1:616417-616436 | Msa0709450:CDS | 50.0% | |
| GCGATTGAGGATCTTGTTCC+TGG | + | chr5_1:616633-616652 | Msa0709450:CDS | 50.0% | |
| GATCTTGTTCCTGGTCGCAA+AGG | + | chr5_1:616642-616661 | Msa0709450:CDS | 50.0% | |
| TGTTTCTTCCCTTTGCGACC+AGG | - | chr5_1:616654-616673 | None:intergenic | 50.0% | |
| GTGTGGAGCAATAACTGCAG+CGG | + | chr5_1:617069-617088 | Msa0709450:CDS | 50.0% | |
| TGTGGAGCAATAACTGCAGC+GGG | + | chr5_1:617070-617089 | Msa0709450:CDS | 50.0% | |
| ! | TTTGGAGCCTGTTTCGCGAA+AGG | + | chr5_1:618149-618168 | Msa0709450:intron | 50.0% |
| AGTGCTTCCTTTCGCGAAAC+AGG | - | chr5_1:618159-618178 | None:intergenic | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | - | chr5_1:618464-618483 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | - | chr5_1:618465-618484 | None:intergenic | 50.0% | |
| GATCACGTGGTTGTTGAGGA+TGG | - | chr5_1:618758-618777 | None:intergenic | 50.0% | |
| TTTCTCCCCCTTTGATCACG+TGG | - | chr5_1:618771-618790 | None:intergenic | 50.0% | |
| ! | GTCTTTGGGAACTAGCCAAG+AGG | + | chr5_1:618791-618810 | Msa0709450:CDS | 50.0% |
| GGCAAGATGCAACAAGAGGT+TGG | + | chr5_1:618976-618995 | Msa0709450:CDS | 50.0% | |
| GCAACAAGAGGTTGGAGTAG+AGG | + | chr5_1:618984-619003 | Msa0709450:CDS | 50.0% | |
| GGTTGGAGTAGAGGACTACA+TGG | + | chr5_1:618993-619012 | Msa0709450:CDS | 50.0% | |
| GTGTGCTTCGGTTCATGGTT+TGG | + | chr5_1:619017-619036 | Msa0709450:CDS | 50.0% | |
| TTTGGTCCCTAGAGTGCAAC+GGG | - | chr5_1:619110-619129 | None:intergenic | 50.0% | |
| AGCTGGTGCAAAGCCATTCG+TGG | + | chr5_1:616108-616127 | Msa0709450:CDS | 55.0% | |
| TGGTGCAAAGCCATTCGTGG+TGG | + | chr5_1:616111-616130 | Msa0709450:CDS | 55.0% | |
| AAAGCCATTCGTGGTGGCAC+TGG | + | chr5_1:616117-616136 | Msa0709450:CDS | 55.0% | |
| AATGCCAGTGCCACCACGAA+TGG | - | chr5_1:616124-616143 | None:intergenic | 55.0% | |
| AGTGGACCGGCAATCAGTGA+GGG | - | chr5_1:617149-617168 | None:intergenic | 55.0% | |
| TGAGAGAGGTGGGTCAAGAG+TGG | - | chr5_1:617167-617186 | None:intergenic | 55.0% | |
| TCCAAGGCCATAGAGAACCC+TGG | + | chr5_1:618889-618908 | Msa0709450:CDS | 55.0% | |
| ACCAGGGTTCTCTATGGCCT+TGG | - | chr5_1:618893-618912 | None:intergenic | 55.0% | |
| !! | GAGGACACGGTGGTTGATGA+CGG | + | chr5_1:618952-618971 | Msa0709450:CDS | 55.0% |
| GGACTACATGGGGTGTGCTT+CGG | + | chr5_1:619005-619024 | Msa0709450:CDS | 55.0% | |
| ATGGGGTGTGCTTCGGTTCA+TGG | + | chr5_1:619012-619031 | Msa0709450:CDS | 55.0% | |
| ATCCATCCCCGTTGCACTCT+AGG | + | chr5_1:619100-619119 | Msa0709450:CDS | 55.0% | |
| TCCATCCCCGTTGCACTCTA+GGG | + | chr5_1:619101-619120 | Msa0709450:CDS | 55.0% | |
| TTGGTCCCTAGAGTGCAACG+GGG | - | chr5_1:619109-619128 | None:intergenic | 55.0% | |
| GAGTGGACCGGCAATCAGTG+AGG | - | chr5_1:617150-617169 | None:intergenic | 60.0% | |
| GAGGTGGGTCAAGAGTGGAC+CGG | - | chr5_1:617162-617181 | None:intergenic | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | + | chr5_1:618454-618473 | Msa0709450:intron | 60.0% | |
| ! | GTCGGTGTTTGAGGACACGG+TGG | + | chr5_1:618942-618961 | Msa0709450:CDS | 60.0% |
| !! | GACACGGTGGTTGATGACGG+CGG | + | chr5_1:618955-618974 | Msa0709450:CDS | 60.0% |
| CGGCGGCAAGATGCAACAAG+AGG | + | chr5_1:618972-618991 | Msa0709450:CDS | 60.0% | |
| TCCCTAGAGTGCAACGGGGA+TGG | - | chr5_1:619105-619124 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 616060 | 619197 | 616060 | ID=Msa0709450;Name=Msa0709450 |
| chr5_1 | mRNA | 616060 | 619197 | 616060 | ID=Msa0709450-mRNA-1;Parent=Msa0709450;Name=Msa0709450-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0.5|0|1|1|1|3|0|458 |
| chr5_1 | exon | 616060 | 616821 | 616060 | ID=Msa0709450-mRNA-1:exon:247;Parent=Msa0709450-mRNA-1 |
| chr5_1 | exon | 617043 | 617199 | 617043 | ID=Msa0709450-mRNA-1:exon:248;Parent=Msa0709450-mRNA-1 |
| chr5_1 | exon | 618740 | 619197 | 618740 | ID=Msa0709450-mRNA-1:exon:249;Parent=Msa0709450-mRNA-1 |
| chr5_1 | CDS | 616060 | 616821 | 616060 | ID=Msa0709450-mRNA-1:cds;Parent=Msa0709450-mRNA-1 |
| chr5_1 | CDS | 617043 | 617199 | 617043 | ID=Msa0709450-mRNA-1:cds;Parent=Msa0709450-mRNA-1 |
| chr5_1 | CDS | 618740 | 619197 | 618740 | ID=Msa0709450-mRNA-1:cds;Parent=Msa0709450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
