AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0860160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860160 MtrunA17_Chr5g0439271 88.908 595 19 2 195 742 8 602 0.0 1070
Msa0860160 MtrunA17_Chr7g0250371 58.869 778 259 14 13 741 19 784 0.0 852
Msa0860160 MtrunA17_Chr7g0250481 56.760 784 267 12 21 741 23 797 0.0 847
Msa0860160 MtrunA17_Chr7g0250391 58.568 782 267 14 8 741 10 782 0.0 837
Msa0860160 MtrunA17_Chr7g0250411 56.739 779 273 16 13 741 19 783 0.0 812
Msa0860160 MtrunA17_Chr7g0250331 57.269 791 258 16 22 741 25 806 0.0 803
Msa0860160 MtrunA17_Chr3g0120521 50.783 766 314 14 22 741 21 769 0.0 724
Msa0860160 MtrunA17_Chr4g0057531 50.723 761 322 13 23 741 27 776 0.0 712
Msa0860160 MtrunA17_Chr4g0057471 48.898 726 307 14 62 741 1 708 0.0 660
Msa0860160 MtrunA17_Chr4g0076611 49.098 721 287 15 73 741 1 693 0.0 650
Msa0860160 MtrunA17_Chr4g0057481 50.507 691 281 14 95 741 16 689 0.0 625
Msa0860160 MtrunA17_Chr4g0057461 48.986 641 260 14 153 741 3 628 0.0 574
Msa0860160 MtrunA17_Chr4g0057491 48.276 638 262 13 153 741 3 621 0.0 548
Msa0860160 MtrunA17_Chr4g0057511 48.571 630 262 13 157 741 3 615 0.0 547
Msa0860160 MtrunA17_Chr5g0423261 48.025 633 273 12 152 741 2 621 0.0 543
Msa0860160 MtrunA17_Chr4g0037221 41.507 730 347 18 70 741 60 767 5.03e-178 528
Msa0860160 MtrunA17_Chr7g0250461 59.611 463 170 9 13 471 19 468 7.83e-177 515
Msa0860160 MtrunA17_Chr5g0401511 40.731 793 383 23 1 740 1 759 1.28e-171 511
Msa0860160 MtrunA17_Chr4g0053781 39.203 778 387 21 13 741 14 754 2.04e-171 511
Msa0860160 MtrunA17_Chr4g0026641 41.634 771 350 24 28 741 26 753 1.00e-166 499
Msa0860160 MtrunA17_Chr4g0020651 40.102 788 384 21 4 739 3 754 1.82e-166 498
Msa0860160 MtrunA17_Chr1g0204321 39.191 791 405 21 1 741 12 776 6.60e-165 494
Msa0860160 MtrunA17_Chr2g0300751 37.905 802 389 24 10 739 6 770 6.97e-162 487
Msa0860160 MtrunA17_Chr1g0152771 37.563 788 399 21 10 739 8 760 4.20e-159 479
Msa0860160 MtrunA17_Chr3g0136151 38.896 761 383 19 28 741 36 761 1.38e-155 470
Msa0860160 MtrunA17_Chr5g0407701 40.079 761 371 27 28 741 27 749 3.13e-155 469
Msa0860160 MtrunA17_Chr8g0351011 39.067 750 375 21 30 741 46 751 3.18e-155 469
Msa0860160 MtrunA17_Chr8g0369891 39.398 764 369 25 28 741 33 752 2.86e-154 466
Msa0860160 MtrunA17_Chr2g0285121 39.332 778 387 23 28 741 26 782 7.13e-153 464
Msa0860160 MtrunA17_Chr7g0262161 37.778 765 394 19 29 741 26 760 3.73e-152 461
Msa0860160 MtrunA17_Chr2g0285111 38.789 776 394 20 28 741 29 785 2.47e-150 457
Msa0860160 MtrunA17_Chr3g0134621 37.080 774 366 21 21 739 26 733 3.81e-149 452
Msa0860160 MtrunA17_Chr3g0143251 38.198 788 399 22 8 741 11 764 1.30e-148 452
Msa0860160 MtrunA17_Chr8g0354771 37.598 766 408 19 24 741 20 763 1.20e-147 449
Msa0860160 MtrunA17_Chr8g0334521 36.658 772 401 22 5 741 15 733 1.56e-146 446
Msa0860160 MtrunA17_Chr8g0377961 38.642 766 381 24 30 741 44 774 4.35e-146 446
Msa0860160 MtrunA17_Chr4g0070391 36.561 785 398 25 8 739 12 749 1.25e-144 441
Msa0860160 MtrunA17_Chr7g0246451 37.351 755 380 22 30 741 41 745 4.06e-144 440
Msa0860160 MtrunA17_Chr8g0344971 37.813 759 402 20 27 741 27 759 7.44e-144 440
Msa0860160 MtrunA17_Chr7g0227991 37.563 788 376 27 8 741 8 733 3.55e-142 434
Msa0860160 MtrunA17_Chr8g0344331 38.102 727 363 22 72 739 74 772 8.32e-142 435
Msa0860160 MtrunA17_Chr7g0246461 37.902 715 343 22 73 741 80 739 9.93e-142 434
Msa0860160 MtrunA17_Chr1g0146271 36.271 783 399 26 1 741 8 732 1.80e-141 432
Msa0860160 MtrunA17_Chr6g0470851 37.468 790 379 30 3 741 4 729 2.09e-139 427
Msa0860160 MtrunA17_Chr1g0170081 35.777 791 390 26 1 741 8 730 2.41e-137 422
Msa0860160 MtrunA17_Chr6g0470881 36.849 787 388 26 3 741 4 729 5.49e-137 421
Msa0860160 MtrunA17_Chr1g0146251 36.211 776 397 24 8 741 15 734 5.37e-135 416
Msa0860160 MtrunA17_Chr3g0079971 37.051 780 388 29 8 741 9 731 1.06e-134 415
Msa0860160 MtrunA17_Chr5g0439281 95.431 197 9 0 1 197 1 197 1.37e-134 395
Msa0860160 MtrunA17_Chr5g0447171 44.961 516 185 10 311 741 6 507 4.35e-133 403
Msa0860160 MtrunA17_Chr8g0334491 36.645 775 366 27 20 741 25 727 7.58e-133 410
Msa0860160 MtrunA17_Chr4g0057061 37.319 761 384 23 28 741 60 774 8.42e-133 411
Msa0860160 MtrunA17_Chr7g0266051 35.724 739 375 17 55 742 17 706 9.72e-133 409
Msa0860160 MtrunA17_Chr1g0189251 36.283 791 416 24 1 741 1 753 1.63e-131 407
Msa0860160 MtrunA17_Chr8g0345971 38.366 722 351 19 73 741 78 758 1.11e-130 405
Msa0860160 MtrunA17_Chr8g0354741 39.650 628 313 15 150 735 24 627 1.24e-130 401
Msa0860160 MtrunA17_Chr8g0345991 36.783 715 376 20 73 741 69 753 1.77e-128 400
Msa0860160 MtrunA17_Chr8g0345981 38.069 725 355 24 73 741 71 757 2.25e-127 397
Msa0860160 MtrunA17_Chr6g0480721 36.972 687 325 17 73 742 5 600 2.38e-127 393
Msa0860160 MtrunA17_Chr8g0376841 40.102 591 262 17 27 569 39 585 8.58e-127 390
Msa0860160 MtrunA17_Chr5g0398241 34.904 785 408 18 13 742 18 754 4.14e-123 385
Msa0860160 MtrunA17_Chr1g0189561 35.257 797 417 27 1 741 7 760 2.72e-122 384
Msa0860160 MtrunA17_Chr2g0303881 37.053 699 396 15 73 741 41 725 8.02e-122 381
Msa0860160 MtrunA17_Chr5g0398401 34.522 785 411 18 13 742 18 754 1.17e-121 382
Msa0860160 MtrunA17_Chr7g0276151 37.326 718 362 23 73 741 77 755 2.38e-119 376
Msa0860160 MtrunA17_Chr8g0345961 35.762 741 381 20 59 741 53 756 3.55e-117 370
Msa0860160 MtrunA17_Chr5g0398351 35.760 783 404 19 13 742 769 1505 6.27e-117 385
Msa0860160 MtrunA17_Chr5g0398351 35.844 770 396 19 20 742 16 734 7.67e-115 379
Msa0860160 MtrunA17_Chr7g0248871 34.696 807 400 31 8 741 11 763 6.86e-117 370
Msa0860160 MtrunA17_Chr5g0398311 35.620 758 391 18 29 742 43 747 3.02e-116 367
Msa0860160 MtrunA17_Chr5g0398331 35.000 760 397 20 29 742 43 751 1.47e-113 360
Msa0860160 MtrunA17_Chr3g0103061 60.440 273 97 4 1 272 1 263 7.26e-106 324
Msa0860160 MtrunA17_Chr7g0248861 34.688 640 320 21 22 602 22 622 1.50e-94 313
Msa0860160 MtrunA17_Chr7g0248861 44.672 244 120 7 136 377 629 859 9.33e-47 179
Msa0860160 MtrunA17_Chr7g0250441 60.073 273 98 5 479 741 11 282 2.47e-94 296
Msa0860160 MtrunA17_Chr4g0071871 33.333 771 398 30 55 740 73 812 3.10e-93 308
Msa0860160 MtrunA17_Chr2g0301011 37.269 542 257 13 102 627 4 478 2.87e-92 296
Msa0860160 MtrunA17_Chr7g0261691 48.788 330 150 8 153 478 17 331 1.04e-91 290
Msa0860160 MtrunA17_Chr3g0143241 40.260 462 242 12 8 463 11 444 7.75e-91 295
Msa0860160 MtrunA17_Chr7g0261701 51.071 280 120 5 472 741 17 289 4.91e-87 276
Msa0860160 MtrunA17_Chr2g0298601 33.020 745 380 28 53 710 71 783 1.34e-86 290
Msa0860160 MtrunA17_Chr4g0075331 30.832 733 387 24 58 703 2 701 4.46e-72 249
Msa0860160 MtrunA17_Chr8g0380961 29.510 776 428 28 55 742 102 846 2.31e-69 244
Msa0860160 MtrunA17_Chr3g0103071 44.444 288 117 4 283 532 1 283 4.35e-68 226
Msa0860160 MtrunA17_Chr4g0026651 42.284 324 133 9 87 376 1 304 3.79e-67 224
Msa0860160 MtrunA17_Chr4g0035881 41.499 347 158 9 231 565 4 317 1.22e-61 210
Msa0860160 MtrunA17_Chr8g0346361 40.942 276 142 6 479 741 229 496 1.95e-60 212
Msa0860160 MtrunA17_Chr8g0346361 44.397 232 102 9 164 394 2 207 1.64e-46 173
Msa0860160 MtrunA17_Chr3g0097061 39.697 330 165 10 102 431 4 299 4.07e-59 206
Msa0860160 MtrunA17_Chr3g0097061 43.103 116 59 1 524 639 330 438 3.17e-26 112
Msa0860160 MtrunA17_Chr3g0105461 40.688 349 147 8 28 376 34 322 6.41e-59 203
Msa0860160 MtrunA17_Chr2g0301031 44.048 252 128 5 495 741 3 246 7.46e-57 194
Msa0860160 MtrunA17_Chr3g0105451 40.214 281 138 7 477 741 12 278 8.68e-57 195
Msa0860160 MtrunA17_Chr2g0312861 43.083 253 129 6 495 741 3 246 3.73e-56 194
Msa0860160 MtrunA17_Chr4g0026661 45.276 254 124 7 495 741 14 259 2.62e-55 190
Msa0860160 MtrunA17_Chr5g0447151 59.333 150 61 0 5 154 6 155 2.12e-52 178
Msa0860160 MtrunA17_Chr4g0057501 63.492 126 45 1 29 154 6 130 9.82e-50 170
Msa0860160 MtrunA17_Chr2g0302951 34.872 390 228 13 52 432 91 463 4.00e-44 171
Msa0860160 MtrunA17_Chr2g0302951 32.168 286 162 10 481 742 562 839 3.60e-25 111
Msa0860160 MtrunA17_Chr3g0103081 52.448 143 66 2 600 741 1 142 2.27e-43 153
Msa0860160 MtrunA17_Chr2g0301911 39.015 264 130 9 168 430 32 265 3.33e-42 157
Msa0860160 MtrunA17_Chr2g0301921 40.187 214 113 6 534 741 1 205 6.47e-42 151
Msa0860160 MtrunA17_Chr2g0312841 43.284 201 90 5 167 367 10 186 4.61e-40 145
Msa0860160 MtrunA17_Chr5g0436021 44.828 174 83 3 192 365 28 188 1.51e-38 141
Msa0860160 MtrunA17_Chr4g0057521 60.465 86 33 1 67 152 13 97 7.94e-30 115
Msa0860160 MtrunA17_Chr3g0142981 43.312 157 59 1 220 376 48 174 6.45e-29 114
Msa0860160 MtrunA17_Chr4g0071191 32.178 202 117 4 481 670 57 250 4.63e-25 105
Msa0860160 MtrunA17_Chr5g0418921 48.000 125 56 2 478 593 10 134 1.38e-24 101
Msa0860160 MtrunA17_Chr7g0261681 56.790 81 35 0 73 153 1 81 6.03e-23 94.4
Msa0860160 MtrunA17_Chr3g0143231 53.333 90 34 2 483 565 1 89 9.05e-22 90.1
Msa0860160 MtrunA17_Chr4g0035871 40.141 142 77 3 54 195 17 150 9.03e-21 89.7
Msa0860160 MtrunA17_Chr8g0346351 32.919 161 94 4 5 165 12 158 7.74e-19 84.7
Msa0860160 MtrunA17_Chr3g0142971 50.000 86 35 2 483 561 1 85 1.63e-18 80.9
Msa0860160 MtrunA17_Chr3g0143021 38.938 113 62 2 70 182 4 109 3.29e-18 80.9
Msa0860160 MtrunA17_Chr5g0436031 33.333 165 101 5 584 742 20 181 2.39e-17 81.6
Msa0860160 MtrunA17_Chr8g0354731 41.667 108 56 2 23 130 47 147 1.04e-16 78.6
Msa0860160 MtrunA17_Chr5g0398341 50.000 84 42 0 534 617 1 84 1.19e-16 75.9
Msa0860160 MtrunA17_Chr8g0376851 32.099 162 102 5 587 741 11 171 1.95e-16 77.8
Msa0860160 MtrunA17_Chr2g0301021 36.184 152 72 5 289 431 189 324 2.12e-16 82.0
Msa0860160 MtrunA17_Chr3g0142961 36.364 132 75 4 575 697 4 135 3.77e-16 75.9
Msa0860160 MtrunA17_Chr2g0312831 33.594 128 72 3 3 124 4 124 2.08e-15 73.9
Msa0860160 MtrunA17_Chr5g0434941 50.000 74 36 1 288 360 1 74 1.95e-13 66.2
Msa0860160 MtrunA17_Chr3g0077671 43.529 85 46 2 512 594 224 308 7.18e-13 70.1
Msa0860160 MtrunA17_Chr2g0301901 34.959 123 72 3 5 126 11 126 1.08e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860160 AT2G04160.1 50.728 755 315 12 29 741 31 770 0.0 733
Msa0860160 AT5G59810.1 50.263 760 313 12 25 741 37 774 0.0 710
Msa0860160 AT5G67360.1 40.127 785 383 21 9 741 5 754 2.87e-175 521
Msa0860160 AT2G05920.1 39.715 773 371 23 18 739 19 747 3.34e-164 492
Msa0860160 AT4G34980.1 38.131 792 396 24 5 741 6 758 5.40e-164 492
Msa0860160 AT5G45650.2 38.685 791 383 21 27 741 24 788 2.54e-158 478
Msa0860160 AT5G45650.1 38.685 791 383 21 27 741 24 788 2.54e-158 478
Msa0860160 AT5G51750.1 38.665 794 406 22 4 741 6 774 2.59e-157 475
Msa0860160 AT1G20160.1 38.718 780 394 22 13 741 15 761 6.00e-154 466
Msa0860160 AT3G14240.1 37.387 773 394 20 29 741 27 769 1.02e-153 466
Msa0860160 AT1G20160.2 40.363 716 359 19 73 741 28 722 6.28e-153 462
Msa0860160 AT5G59100.1 38.983 767 365 26 21 741 28 737 2.51e-152 461
Msa0860160 AT3G14067.1 36.855 795 404 26 8 741 10 767 4.64e-152 462
Msa0860160 AT1G20150.1 39.142 769 380 23 30 741 33 770 1.22e-150 458
Msa0860160 AT1G01900.1 39.499 719 359 17 73 741 79 771 6.20e-148 451
Msa0860160 AT5G59090.1 38.743 764 360 24 24 741 27 728 1.51e-147 449
Msa0860160 AT5G59120.1 38.201 767 354 22 27 741 29 727 2.54e-147 448
Msa0860160 AT5G59130.2 38.451 762 389 22 2 741 12 715 2.67e-147 448
Msa0860160 AT5G58830.1 37.775 773 359 23 8 741 16 705 3.12e-147 447
Msa0860160 AT5G59130.4 38.551 773 383 25 2 741 12 725 4.10e-147 447
Msa0860160 AT5G59090.3 38.743 764 358 25 24 741 27 726 2.61e-146 446
Msa0860160 AT5G59090.2 38.401 763 359 23 24 741 27 723 4.36e-146 445
Msa0860160 AT4G10550.1 37.042 791 413 22 3 741 9 766 1.30e-145 445
Msa0860160 AT4G10550.3 37.452 777 401 22 17 741 39 782 2.19e-145 445
Msa0860160 AT5G59130.1 38.551 773 379 26 2 741 12 721 2.63e-145 443
Msa0860160 AT5G59130.3 39.551 713 347 21 66 741 21 686 1.38e-144 440
Msa0860160 AT5G59190.1 38.682 698 332 19 55 710 15 658 9.73e-144 437
Msa0860160 AT4G10520.1 37.468 790 391 23 6 741 4 744 1.09e-143 439
Msa0860160 AT3G46850.1 38.727 754 379 26 24 741 28 734 9.06e-143 436
Msa0860160 AT4G00230.1 38.270 763 378 22 21 741 32 743 9.41e-143 437
Msa0860160 AT5G58840.1 37.288 767 387 20 2 741 7 706 1.98e-142 435
Msa0860160 AT3G46840.1 38.015 776 399 26 1 741 6 734 2.86e-142 435
Msa0860160 AT5G03620.1 37.531 802 385 26 7 742 8 759 6.23e-142 435
Msa0860160 AT1G32940.1 37.711 769 390 25 28 741 28 762 5.32e-141 433
Msa0860160 AT1G04110.1 35.346 795 426 20 7 741 4 770 2.42e-139 429
Msa0860160 AT4G26330.2 39.024 738 362 22 65 742 13 722 3.94e-139 427
Msa0860160 AT1G32950.1 37.080 774 403 22 20 741 20 761 7.74e-139 427
Msa0860160 AT5G58820.1 38.380 753 347 21 27 741 27 700 9.44e-139 425
Msa0860160 AT1G32960.1 36.671 769 398 25 28 741 31 765 8.03e-138 425
Msa0860160 AT4G10550.4 37.092 736 385 20 58 741 1 710 1.13e-136 420
Msa0860160 AT4G10550.2 37.092 736 385 20 58 741 1 710 1.13e-136 420
Msa0860160 AT4G26330.1 38.298 752 362 23 65 742 13 736 2.64e-135 417
Msa0860160 AT4G10510.3 36.340 776 411 20 17 741 22 765 1.04e-134 417
Msa0860160 AT1G32940.4 37.618 739 378 24 58 741 1 711 1.65e-134 414
Msa0860160 AT1G32940.2 37.618 739 378 24 58 741 1 711 1.65e-134 414
Msa0860160 AT5G45640.1 37.416 743 354 19 81 741 38 751 4.48e-134 414
Msa0860160 AT4G10510.1 36.435 763 402 20 30 741 23 753 1.12e-133 414
Msa0860160 AT1G66210.1 36.447 760 407 21 19 741 30 750 2.10e-133 413
Msa0860160 AT4G21630.1 37.099 779 415 25 6 741 7 753 8.75e-133 411
Msa0860160 AT4G10530.1 36.143 783 410 22 1 741 1 735 1.87e-132 410
Msa0860160 AT4G10540.1 35.944 779 412 22 17 741 18 763 2.81e-132 410
Msa0860160 AT1G32950.2 37.228 736 384 21 58 741 1 710 4.80e-132 408
Msa0860160 AT4G21640.1 37.549 767 387 27 8 741 20 727 6.17e-132 408
Msa0860160 AT4G21650.1 37.090 763 397 28 24 741 36 760 9.26e-131 406
Msa0860160 AT5G11940.1 36.059 746 416 24 28 741 36 752 4.92e-130 404
Msa0860160 AT4G10510.4 36.190 735 392 19 58 741 1 709 4.50e-127 395
Msa0860160 AT1G66220.1 35.798 771 380 23 26 741 34 744 4.72e-126 394
Msa0860160 AT4G10510.2 35.972 720 384 19 73 741 1 694 1.56e-122 383
Msa0860160 AT4G15040.2 36.027 730 364 23 55 741 16 685 6.22e-119 373
Msa0860160 AT4G15040.1 36.027 730 364 23 55 741 16 685 6.22e-119 373
Msa0860160 AT5G03620.2 38.816 608 283 17 7 565 8 575 1.76e-115 360
Msa0860160 AT4G21323.1 35.387 763 388 23 30 739 81 791 1.73e-113 362
Msa0860160 AT1G32940.3 38.576 604 295 19 28 583 28 603 5.39e-112 352
Msa0860160 AT4G00230.2 39.519 582 276 15 21 568 32 571 2.60e-111 350
Msa0860160 AT1G32970.1 34.275 779 394 28 15 741 10 722 3.83e-111 354
Msa0860160 AT5G58840.3 38.423 596 283 16 2 576 7 539 3.01e-108 340
Msa0860160 AT5G67090.1 34.653 707 368 25 70 730 57 715 5.24e-105 338
Msa0860160 AT4G21326.1 32.062 708 436 16 58 741 1 687 1.76e-104 335
Msa0860160 AT4G30020.3 31.836 779 403 29 56 742 70 812 5.81e-89 297
Msa0860160 AT4G30020.1 31.836 779 403 29 56 742 70 812 5.81e-89 297
Msa0860160 AT4G30020.4 31.836 779 403 29 56 742 70 812 5.81e-89 297
Msa0860160 AT4G30020.2 31.836 779 403 29 56 742 70 812 5.81e-89 297
Msa0860160 AT2G19170.1 31.795 780 401 32 56 742 70 811 8.44e-88 294
Msa0860160 AT2G19170.2 31.795 780 401 32 56 742 70 811 8.44e-88 294
Msa0860160 AT1G20160.3 38.104 517 255 15 13 494 15 501 4.51e-87 285
Msa0860160 AT1G30600.1 30.946 782 410 28 55 742 82 827 5.46e-83 281
Msa0860160 AT2G39850.1 30.489 797 414 36 27 741 27 765 2.54e-82 278
Msa0860160 AT4G20430.3 29.773 749 408 25 53 712 101 820 5.44e-77 265
Msa0860160 AT4G20430.1 29.773 749 408 25 53 712 101 820 5.44e-77 265
Msa0860160 AT5G58840.2 35.564 523 258 16 2 510 7 464 9.09e-77 255
Msa0860160 AT4G20430.2 30.483 725 410 24 53 712 101 796 5.57e-76 262
Msa0860160 AT5G44530.1 29.962 781 422 28 53 742 88 834 5.55e-75 259
Msa0860160 AT1G62340.1 30.096 731 396 24 55 696 82 786 3.32e-72 252
Msa0860160 AT5G44530.2 29.032 806 422 29 53 742 88 859 4.86e-70 246
Msa0860160 AT5G44530.3 32.886 447 252 18 52 475 87 508 2.96e-46 175
Msa0860160 AT1G32980.1 41.579 190 106 4 528 713 1 189 7.13e-36 134
Msa0860160 AT5G59110.1 37.267 161 92 6 589 741 7 166 2.57e-24 100

Find 169 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAGTTCATTGACATTTA+AGG 0.106897 5_4:-58726331 Msa0860160:CDS
TCAACAACTTGAAGAATTTA+AGG 0.116991 5_4:-58726364 Msa0860160:CDS
TCACCTGATGTAACAATATT+TGG 0.131894 5_4:-58728867 Msa0860160:CDS
GGCTTTGAAGCTGCTCTTGC+AGG 0.182619 5_4:-58728048 Msa0860160:CDS
TCATTGACATTTAAGGAAAT+TGG 0.202709 5_4:-58726324 Msa0860160:CDS
CTCACAGCACGTGACTTTAT+TGG 0.216825 5_4:-58728930 Msa0860160:CDS
GATTTACTTGCTTCAATCTT+AGG 0.232077 5_4:-58731128 Msa0860160:CDS
CCTCATGTTGCTGGCATTGC+TGG 0.232103 5_4:-58726983 Msa0860160:CDS
TAATTGTGCTTATGGTTATT+TGG 0.237671 5_4:-58726116 Msa0860160:three_prime_UTR
TGATGTGATTTCAACTTCTT+TGG 0.256845 5_4:-58728703 Msa0860160:CDS
GATGAAAACCCAGCCATAAT+TGG 0.268338 5_4:+58727663 None:intergenic
GTGAACAAAGCTTCAATATA+TGG 0.271746 5_4:+58728669 None:intergenic
CTTTGACCAACATACTTTGT+AGG 0.283223 5_4:+58728794 None:intergenic
ACAAATTATAGAAAACTAAT+TGG 0.289969 5_4:-58729011 Msa0860160:intron
ACAAGGTCATGGGACTTTCT+TGG 0.296242 5_4:-58730777 Msa0860160:CDS
AGTTTCAGTGGCATTGGATA+TGG 0.305789 5_4:-58730645 Msa0860160:CDS
TTCACTGATGGAATTTCAAT+TGG 0.310273 5_4:-58728651 Msa0860160:CDS
GTTGTGGTTGTTTGTTCTGC+TGG 0.310740 5_4:-58728603 Msa0860160:CDS
CCATTCCCACGCCACTTTGA+TGG 0.314514 5_4:+58730615 None:intergenic
TTGGTAGGATCAAGTGTTCT+AGG 0.318013 5_4:+58728129 None:intergenic
ATTAAAGCCATCTCCAATTA+TGG 0.319155 5_4:-58727676 Msa0860160:CDS
ATGTCTTGTCCTCATGTTGC+TGG 0.337178 5_4:-58726992 Msa0860160:CDS
ATCATGGCTAATTTAGATTC+AGG 0.342799 5_4:-58730687 Msa0860160:CDS
TTTGTTAGCCATATTTCTAT+TGG 0.347963 5_4:-58728498 Msa0860160:CDS
ATAGCGACTCCATTTGAATA+TGG 0.349781 5_4:-58726657 Msa0860160:CDS
CAAGTCAATTTCCCAAATAC+TGG 0.351450 5_4:+58726243 None:intergenic
CTGTTTCCTTTGCCTTCTCA+TGG 0.356099 5_4:+58731017 None:intergenic
CAGATAATTCTAGAGGCAAT+AGG 0.359087 5_4:-58726285 Msa0860160:CDS
TTGCAGCTAGTACAATTGAT+AGG 0.366041 5_4:-58728524 Msa0860160:CDS
CGGTACGAGTAACGTTTATA+AGG 0.370101 5_4:+58726427 None:intergenic
AGATCATCAAGGGAAGGATT+TGG 0.371348 5_4:+58731176 None:intergenic
GTTTGTTCTGCTGGGAATGA+TGG 0.375656 5_4:-58728594 Msa0860160:CDS
CATCAAAGTGGCGTGGGAAT+GGG 0.376586 5_4:-58730614 Msa0860160:CDS
ACTCCATTTGAATATGGTTC+TGG 0.377150 5_4:-58726651 Msa0860160:CDS
CAAAACTACGAATCACAATA+TGG 0.381895 5_4:-58728972 Msa0860160:CDS
CCATCAAAGTGGCGTGGGAA+TGG 0.381901 5_4:-58730615 Msa0860160:CDS
CCACTGAAACTTTCATGTTC+CGG 0.386600 5_4:+58730657 None:intergenic
GTTCCTTGTTGCAGATTGTA+AGG 0.394947 5_4:+58727019 None:intergenic
GGGAAATTGACTTGGACAAA+TGG 0.397704 5_4:-58726234 Msa0860160:CDS
GAATTTCTCTTGATTCTGCT+TGG 0.409462 5_4:-58730737 Msa0860160:CDS
GCTTGGTGGAAGGCAAGATT+TGG 0.411231 5_4:-58730720 Msa0860160:CDS
GATGTGATTTCAACTTCTTT+GGG 0.412723 5_4:-58728702 Msa0860160:CDS
AATGGTTATCCTAAAATGTA+TGG 0.412985 5_4:-58726003 None:intergenic
CTAATTTAGATTCAGGCGTT+TGG 0.413541 5_4:-58730680 Msa0860160:CDS
TCCTTAAATGTCAATGAACT+TGG 0.416086 5_4:+58726330 None:intergenic
TAAGCTCATGAATCTCTCTA+AGG 0.416487 5_4:-58726177 Msa0860160:three_prime_UTR
TTATCGAACGCGTCTCTGAT+TGG 0.421421 5_4:+58726681 None:intergenic
CAAATACAACATTCTGCAAC+AGG 0.427748 5_4:-58730560 Msa0860160:intron
CATGAAAGTTTCAGTGGCAT+TGG 0.431620 5_4:-58730651 Msa0860160:CDS
TCAAGACACTTCATCCTAGT+TGG 0.433278 5_4:-58726955 Msa0860160:CDS
CTTGATCCTACCAAAGTAAA+GGG 0.434353 5_4:-58728120 Msa0860160:CDS
TATGTGTGTAATTGTGCTTA+TGG 0.441101 5_4:-58726124 Msa0860160:three_prime_UTR
TTGCAGAATGTTGTATTTGA+AGG 0.443750 5_4:+58730564 None:intergenic
CCTAACCTTGCAATGGATCC+AGG 0.444320 5_4:-58726618 Msa0860160:CDS
TCACGTGCTGTGAGGTTTGA+GGG 0.445205 5_4:+58728939 None:intergenic
TGAGCTTACAAGACTACTAT+AGG 0.446634 5_4:+58726192 None:intergenic
CAGTATTTGGGAAATTGACT+TGG 0.447547 5_4:-58726242 Msa0860160:CDS
ATGGCAGATTTGATAGCAGC+TGG 0.451272 5_4:+58726929 None:intergenic
TTGCCAAATATTGTTACATC+AGG 0.455392 5_4:+58728864 None:intergenic
TAATATCTTTCCCTTTACTT+TGG 0.455724 5_4:+58728110 None:intergenic
TAAATCATAATGTGAATTTG+TGG 0.457110 5_4:+58731145 None:intergenic
CCACGCCACTTTGATGGCAC+TGG 0.458266 5_4:+58730621 None:intergenic
ATTGAAGCTTTGTTCACTGA+TGG 0.459805 5_4:-58728663 Msa0860160:CDS
AAGCCATCTCCAATTATGGC+TGG 0.460623 5_4:-58727672 Msa0860160:CDS
GTCATGGGACTTTCTTGGAC+TGG 0.470096 5_4:-58730772 Msa0860160:CDS
TTTCTCTTGATTCTGCTTGG+TGG 0.474583 5_4:-58730734 Msa0860160:CDS
GTAGACATATATTGTATACT+TGG 0.475700 5_4:-58731216 Msa0860160:intron
TCCATACTTGCACCAGGTAA+AGG 0.476009 5_4:+58727961 None:intergenic
TTGTGGTTGTTTGTTCTGCT+GGG 0.479274 5_4:-58728602 Msa0860160:CDS
TCTTGATTCTGCTTGGTGGA+AGG 0.479653 5_4:-58730730 Msa0860160:CDS
GCTGCTCTTGCAGGAGCTGT+AGG 0.480239 5_4:-58728039 Msa0860160:CDS
GCACATGCTTACCTTTCTAA+AGG 0.480672 5_4:+58731359 None:intergenic
ACTCGTACCGTCACAAATGT+TGG 0.481576 5_4:-58726414 Msa0860160:CDS
TAGGATGCTACACGTGCTCT+AGG 0.482800 5_4:+58728813 None:intergenic
CTTAGATCATAAACAAGTCC+TGG 0.482949 5_4:+58726600 None:intergenic
CGAGTAACGTTTATAAGGTT+CGG 0.483106 5_4:+58726432 None:intergenic
CAGCCTGACATAACTGCTCC+TGG 0.483975 5_4:-58727112 Msa0860160:CDS
CGATTATACACAGTAATTGA+AGG 0.493869 5_4:+58726459 None:intergenic
TCTTACAATAAGCATATCAA+TGG 0.494398 5_4:-58730986 Msa0860160:CDS
GTGATCAATGATGAGAAAAG+TGG 0.495030 5_4:-58728009 Msa0860160:CDS
TTTAGATTCAGGCGTTTGGC+CGG 0.495390 5_4:-58730676 Msa0860160:CDS
TCACTGATGGAATTTCAATT+GGG 0.496395 5_4:-58728650 Msa0860160:CDS
ACAATATTTGGCAACGGTAA+CGG 0.497945 5_4:-58728855 Msa0860160:CDS
TGCTCCTGGAGTGAACATAT+TGG 0.499041 5_4:-58727098 Msa0860160:CDS
GGAATGATGGACCTGCTCAT+AGG 0.501150 5_4:-58728581 Msa0860160:CDS
ACTTGATCCTACCAAAGTAA+AGG 0.503049 5_4:-58728121 Msa0860160:CDS
TGTCCAGAACCATATTCAAA+TGG 0.505775 5_4:+58726648 None:intergenic
CTTAGTAAAGGCTTACCATC+AGG 0.508204 5_4:-58728352 Msa0860160:CDS
TGTATTGAAGAATGTTCTGC+TGG 0.508953 5_4:-58726051 Msa0860160:three_prime_UTR
ATCTTTCCCTTTACTTTGGT+AGG 0.511771 5_4:+58728114 None:intergenic
AGGATGCTACACGTGCTCTA+GGG 0.513581 5_4:+58728814 None:intergenic
GTCACGTGCTGTGAGGTTTG+AGG 0.515710 5_4:+58728938 None:intergenic
TGGTAAGCCTTTACTAAGAC+TGG 0.517145 5_4:+58728357 None:intergenic
CTGCTCTTGCAGGAGCTGTA+GGG 0.519097 5_4:-58728038 Msa0860160:CDS
CAGGGTGCCAGTCTTAGTAA+AGG 0.519655 5_4:-58728364 Msa0860160:CDS
CTCGTACCGTCACAAATGTT+GGG 0.521038 5_4:-58726413 Msa0860160:CDS
TAGACATATATTGTATACTT+GGG 0.521854 5_4:-58731215 Msa0860160:CDS
AACGGTAACGGCACAGCGAA+AGG 0.522680 5_4:-58728843 Msa0860160:CDS
TTTGATCAAGCTATATATGA+TGG 0.524554 5_4:-58728729 Msa0860160:CDS
TGTTGGTCAAAGACAGATGC+AGG 0.529348 5_4:-58728783 Msa0860160:CDS
ATAGCAGCTGGGCTCCAACT+AGG 0.530211 5_4:+58726941 None:intergenic
ACTCCAGGAGCAGTTATGTC+AGG 0.531162 5_4:+58727109 None:intergenic
CAGTAATTGAAGGATAATTG+AGG 0.532746 5_4:+58726469 None:intergenic
TACTTACGCATCTTGAATTG+TGG 0.532753 5_4:+58728273 None:intergenic
ATCAAAGTGGCGTGGGAATG+GGG 0.533824 5_4:-58730613 Msa0860160:CDS
GTGATTTCAACTTCTTTGGG+TGG 0.540742 5_4:-58728699 Msa0860160:CDS
GTATCTGATGGTAGATTCGA+TGG 0.541870 5_4:+58727052 None:intergenic
CCTGGATCCATTGCAAGGTT+AGG 0.548244 5_4:+58726618 None:intergenic
GCACGTGACTTTATTGGCCA+TGG 0.550564 5_4:-58728924 Msa0860160:CDS
TACTTGCTTCAATCTTAGGA+AGG 0.554717 5_4:-58731124 Msa0860160:intron
AATATAAATTGCACACTACA+AGG 0.554754 5_4:-58730794 Msa0860160:CDS
AATTGCACACTACAAGGTCA+TGG 0.556893 5_4:-58730788 Msa0860160:CDS
TGCAGCTAGTACAATTGATA+GGG 0.556954 5_4:-58728523 Msa0860160:CDS
TTGATAATGTGTGTGTGCCA+TGG 0.557883 5_4:+58728907 None:intergenic
AACCTTTCAGATAATTCTAG+AGG 0.558240 5_4:-58726292 Msa0860160:CDS
ATTAATGGTTGCACTGCACT+AGG 0.559723 5_4:+58727633 None:intergenic
TAAGATACCGGTAGTCATGA+TGG 0.560336 5_4:+58726910 None:intergenic
TGGCTAACTCAAGATCATCA+AGG 0.561451 5_4:+58731165 None:intergenic
ACACACTGATGCCTTTAGAA+AGG 0.561533 5_4:-58731370 Msa0860160:intron
GCAGCCAATATGTTCACTCC+AGG 0.562565 5_4:+58727094 None:intergenic
TGCACTGCTTGAAGATGAAG+AGG 0.564011 5_4:-58730957 Msa0860160:CDS
GTCTCCTAGCACATATGTTG+TGG 0.564438 5_4:-58726391 Msa0860160:CDS
ATTTGGTGAAGATACAATCA+TGG 0.565020 5_4:-58730703 Msa0860160:CDS
AGCCATCTCCAATTATGGCT+GGG 0.565576 5_4:-58727671 Msa0860160:CDS
TTGAAGATGAAGAGGCATCA+AGG 0.566693 5_4:-58730949 Msa0860160:CDS
GCTGAACCTCATCCTTTACC+TGG 0.567641 5_4:-58727973 Msa0860160:CDS
ATTTCCACAACATATGTGCT+AGG 0.568399 5_4:+58726387 None:intergenic
TGCCTCTAGAATTATCTGAA+AGG 0.572152 5_4:+58726290 None:intergenic
CACACATTATCAACAGCAGC+AGG 0.573163 5_4:-58728897 Msa0860160:CDS
AAATCTGCCATCATGACTAC+CGG 0.576826 5_4:-58726917 Msa0860160:intron
CAGTGCCATCAAAGTGGCGT+GGG 0.584279 5_4:-58730620 Msa0860160:CDS
CTTGCACCAGGTAAAGGATG+AGG 0.586113 5_4:+58727967 None:intergenic
TTTGTAACACTCCTATGAGC+AGG 0.587801 5_4:+58728570 None:intergenic
AACCCAGCCATAATTGGAGA+TGG 0.588591 5_4:+58727669 None:intergenic
AACTCAAGATCATCAAGGGA+AGG 0.589032 5_4:+58731170 None:intergenic
TGATGGTAGATTCGATGGAC+TGG 0.597441 5_4:+58727057 None:intergenic
TATTCAGCCTAACCTTGCAA+TGG 0.600414 5_4:-58726625 Msa0860160:CDS
ATTGCACACTACAAGGTCAT+GGG 0.603683 5_4:-58730787 Msa0860160:CDS
GGATGCTACACGTGCTCTAG+GGG 0.604171 5_4:+58728815 None:intergenic
TGTAACAATGTATTGAACAA+TGG 0.606755 5_4:-58726021 Msa0860160:three_prime_UTR
GGAATGCGGCGTGTATCTGA+TGG 0.608485 5_4:+58727040 None:intergenic
TAGCATCCTACAAAGTATGT+TGG 0.610569 5_4:-58728800 Msa0860160:CDS
TGGTAGATTCGATGGACTGG+TGG 0.611336 5_4:+58727060 None:intergenic
CAAGTCCTGGATCCATTGCA+AGG 0.614140 5_4:+58726613 None:intergenic
CCGGAACATGAAAGTTTCAG+TGG 0.614835 5_4:-58730657 Msa0860160:CDS
GGCTAACTCAAGATCATCAA+GGG 0.615881 5_4:+58731166 None:intergenic
GATGTAACAATATTTGGCAA+CGG 0.616934 5_4:-58728861 Msa0860160:CDS
TACTTGGGAGGACATTCTCA+TGG 0.617129 5_4:-58731200 Msa0860160:CDS
GCAATAGGTATGCCTCCTCA+TGG 0.618674 5_4:-58726270 Msa0860160:CDS
TCAATTACTGTGTATAATCG+AGG 0.623863 5_4:-58726456 Msa0860160:CDS
CCAGTGCCATCAAAGTGGCG+TGG 0.628843 5_4:-58730621 Msa0860160:CDS
GAAACAACGTCTATTGCTCA+AGG 0.634413 5_4:-58728069 Msa0860160:CDS
TTGGCATCCATACTTGCACC+AGG 0.635574 5_4:+58727955 None:intergenic
ACATATATTGTATACTTGGG+AGG 0.638598 5_4:-58731212 Msa0860160:CDS
TAACAGCCATGAGAAGGCAA+AGG 0.643205 5_4:-58731023 Msa0860160:intron
GTGTTACAAATGTTGCACCT+TGG 0.643796 5_4:-58728557 Msa0860160:CDS
ATTCCTTACAATCTGCAACA+AGG 0.647427 5_4:-58727022 Msa0860160:CDS
GTTGCAGATTGTAAGGAATG+CGG 0.656336 5_4:+58727026 None:intergenic
TGGCAGATTTGATAGCAGCT+GGG 0.656811 5_4:+58726930 None:intergenic
AGGAGACCCAACATTTGTGA+CGG 0.664789 5_4:+58726407 None:intergenic
CAATAAAGTCACGTGCTGTG+AGG 0.667759 5_4:+58728931 None:intergenic
ATGGTCCAGTGCCATCAAAG+TGG 0.675024 5_4:-58730626 Msa0860160:CDS
GGTAACGGCACAGCGAAAGG+TGG 0.679426 5_4:-58728840 Msa0860160:CDS
AATACTGGAAAACCATGAGG+AGG 0.686042 5_4:+58726258 None:intergenic
CCAGCAATGCCAGCAACATG+AGG 0.694690 5_4:+58726983 None:intergenic
CTATAGGACTAGTTACTCTG+TGG 0.701819 5_4:+58726208 None:intergenic
CCAAATACTGGAAAACCATG+AGG 0.707398 5_4:+58726255 None:intergenic
GCTGCAACAGTGAAAGACCA+AGG 0.714415 5_4:+58728540 None:intergenic
TGGTCAAAGACAGATGCAGG+TGG 0.723373 5_4:-58728780 Msa0860160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCAAATTATTTTAGTTAA+GGG + chr5_4:58727031-58727050 None:intergenic 10.0%
!!! AAATCAAATTATTTTAGTTA+AGG + chr5_4:58727032-58727051 None:intergenic 10.0%
!!! TAACTAAAATAATTTGATTT+TGG - chr5_4:58727032-58727051 Msa0860160:CDS 10.0%
!!! TTTACATAAACTTATTTTAT+TGG - chr5_4:58729042-58729061 Msa0860160:intron 10.0%
!!! AAAAAATTAGTATTTGTTAT+TGG - chr5_4:58729217-58729236 Msa0860160:intron 10.0%
!!! TTATTTTATGAAGATAAGTT+GGG + chr5_4:58726955-58726974 None:intergenic 15.0%
!!! TTTATTTTATGAAGATAAGT+TGG + chr5_4:58726956-58726975 None:intergenic 15.0%
!! ACTTATCTTCATAAAATAAA+AGG - chr5_4:58726956-58726975 Msa0860160:CDS 15.0%
!!! ATCAAATTATTTTAGTTAAG+GGG + chr5_4:58727030-58727049 None:intergenic 15.0%
!!! TAACTAAAATAATTCGATTT+TGG + chr5_4:58727398-58727417 None:intergenic 15.0%
!!! AAAATCGAATTATTTTAGTT+AGG - chr5_4:58727397-58727416 Msa0860160:intron 15.0%
!!! AAATCGAATTATTTTAGTTA+GGG - chr5_4:58727398-58727417 Msa0860160:intron 15.0%
!!! AAACATGTTTTAATTAGAAA+AGG + chr5_4:58727492-58727511 None:intergenic 15.0%
!! TTTCATTAAATAATGAGAAA+GGG + chr5_4:58727534-58727553 None:intergenic 15.0%
!!! TTTTCATTAAATAATGAGAA+AGG + chr5_4:58727535-58727554 None:intergenic 15.0%
!! ACAAATTATAGAAAACTAAT+TGG - chr5_4:58728427-58728446 Msa0860160:intron 15.0%
!!! ATTTGATATATTTTCTTTGA+TGG + chr5_4:58729113-58729132 None:intergenic 15.0%
!!! ATTTTTTTTATGCAAGTTTA+GGG + chr5_4:58729204-58729223 None:intergenic 15.0%
!!! AATTTTTTTTATGCAAGTTT+AGG + chr5_4:58729205-58729224 None:intergenic 15.0%
!! GTTTATTTATATTATAATGC+AGG - chr5_4:58729698-58729717 Msa0860160:intron 15.0%
!!! CTAAATTTTGTTTTTGATTT+AGG + chr5_4:58730615-58730634 None:intergenic 15.0%
!!! AAATGTGAATTCTAAGAATT+TGG + chr5_4:58726155-58726174 None:intergenic 20.0%
!! TAGACATATATTGTATACTT+GGG - chr5_4:58726223-58726242 Msa0860160:CDS 20.0%
!! TAAATCATAATGTGAATTTG+TGG + chr5_4:58726296-58726315 None:intergenic 20.0%
!!! TACTTTAGAGTAAGAAATAA+AGG + chr5_4:58726931-58726950 None:intergenic 20.0%
!!! TATTTTATGAAGATAAGTTG+GGG + chr5_4:58726954-58726973 None:intergenic 20.0%
!! AAATAAAAAAATTACGCATG+TGG - chr5_4:58727299-58727318 Msa0860160:intron 20.0%
!!! AATCGAATTATTTTAGTTAG+GGG - chr5_4:58727399-58727418 Msa0860160:intron 20.0%
!!! TGAAATAAAGTACTGATATT+TGG + chr5_4:58727567-58727586 None:intergenic 20.0%
!! TAAGTAAAGTTATTATCACA+TGG + chr5_4:58727856-58727875 None:intergenic 20.0%
!!! TTTTCATCTTAAACACAAAT+TGG + chr5_4:58728082-58728101 None:intergenic 20.0%
!!! AATTTGTGTTTAAGATGAAA+AGG - chr5_4:58728081-58728100 Msa0860160:CDS 20.0%
!! AAGTTATTGATAAACATCTA+CGG - chr5_4:58728290-58728309 Msa0860160:CDS 20.0%
!! TAAACAAAGACAATGAATAT+AGG - chr5_4:58728343-58728362 Msa0860160:CDS 20.0%
!!! TATAATTTGTCACATAACAT+AGG + chr5_4:58728417-58728436 None:intergenic 20.0%
!!! TTTTGTTACCAATAGAAATA+TGG + chr5_4:58728951-58728970 None:intergenic 20.0%
!! TGGTAACAAAAATTACATAA+AGG - chr5_4:58728960-58728979 Msa0860160:CDS 20.0%
!!! TAAAGGTATGAATAGTAATA+AGG - chr5_4:58728977-58728996 Msa0860160:CDS 20.0%
!! TATATTATAATGCAGGAAAA+TGG - chr5_4:58729705-58729724 Msa0860160:intron 20.0%
!! ATACTATATTACTACTTATG+TGG + chr5_4:58729953-58729972 None:intergenic 20.0%
!!! ATTAATCATCTTTGGTATTT+TGG - chr5_4:58730161-58730180 Msa0860160:intron 20.0%
!!! TTGTTTTTGATTTAGGTAAA+AGG + chr5_4:58730608-58730627 None:intergenic 20.0%
!!! AGTTTGTGTTTTTTTACTAA+TGG - chr5_4:58731355-58731374 Msa0860160:intron 20.0%
!! GATAGAAAAAGTTTGGTAAT+AGG + chr5_4:58726018-58726037 None:intergenic 25.0%
! GAATGATGATAGAAAAAGTT+TGG + chr5_4:58726025-58726044 None:intergenic 25.0%
! TTTGGATATTAAGACTATAG+AGG + chr5_4:58726137-58726156 None:intergenic 25.0%
! GTAGACATATATTGTATACT+TGG - chr5_4:58726222-58726241 Msa0860160:CDS 25.0%
! TCTTACAATAAGCATATCAA+TGG - chr5_4:58726452-58726471 Msa0860160:CDS 25.0%
!!! GCAATAATTACTTTTTTACG+TGG - chr5_4:58726523-58726542 Msa0860160:CDS 25.0%
!! CTGTTTATATGTTTCTATGT+TGG - chr5_4:58726580-58726599 Msa0860160:CDS 25.0%
! AATATAAATTGCACACTACA+AGG - chr5_4:58726644-58726663 Msa0860160:CDS 25.0%
!!! ATCGAATTATTTTAGTTAGG+GGG - chr5_4:58727400-58727419 Msa0860160:intron 25.0%
!! GTTTATAGAAATTGCGATTT+TGG + chr5_4:58727426-58727445 None:intergenic 25.0%
! ATCGCAATTTCTATAAACAT+AGG - chr5_4:58727428-58727447 Msa0860160:intron 25.0%
! TCGCAATTTCTATAAACATA+GGG - chr5_4:58727429-58727448 Msa0860160:intron 25.0%
! AAAGGACAACAGTTATATTT+AGG + chr5_4:58727474-58727493 None:intergenic 25.0%
! TATATGGATATGAACTAAGA+AGG + chr5_4:58727597-58727616 None:intergenic 25.0%
!!! AGCATTGATATTGTATAGTT+GGG + chr5_4:58727722-58727741 None:intergenic 25.0%
!! AAGTTAGTATTTGGAACTTA+TGG + chr5_4:58727954-58727973 None:intergenic 25.0%
! ATGGAGTTTGATGAAAATTA+CGG + chr5_4:58727998-58728017 None:intergenic 25.0%
! AAGATGAAAAGGTTTAATGA+CGG - chr5_4:58728092-58728111 Msa0860160:CDS 25.0%
! TTTGATCAAGCTATATATGA+TGG - chr5_4:58728709-58728728 Msa0860160:CDS 25.0%
!! TTTGTTAGCCATATTTCTAT+TGG - chr5_4:58728940-58728959 Msa0860160:CDS 25.0%
!! ATTTTATTGGATCGTATTTC+AGG - chr5_4:58729055-58729074 Msa0860160:intron 25.0%
!! TTTTATTGGATCGTATTTCA+GGG - chr5_4:58729056-58729075 Msa0860160:intron 25.0%
! TAATATCTTTCCCTTTACTT+TGG + chr5_4:58729331-58729350 None:intergenic 25.0%
! TTGTATACCTTGAGTATTAA+TGG + chr5_4:58729823-58729842 None:intergenic 25.0%
! ATCAGTTCGATAAAAAAACA+AGG - chr5_4:58730010-58730029 Msa0860160:intron 25.0%
!!! GAAATATAAGTTGAGTTTTG+AGG + chr5_4:58730052-58730071 None:intergenic 25.0%
! TGAATGTAGGATTGAAAAAT+AGG + chr5_4:58730253-58730272 None:intergenic 25.0%
!!! ATATTGATTTGCTAAGATAC+CGG + chr5_4:58730543-58730562 None:intergenic 25.0%
!! TTGAACTTCATTTGTGTTTT+TGG - chr5_4:58730874-58730893 Msa0860160:intron 25.0%
!! TTTTCAATGTTGTAAAACTC+AGG + chr5_4:58730949-58730968 None:intergenic 25.0%
! TCAACAACTTGAAGAATTTA+AGG - chr5_4:58731074-58731093 Msa0860160:intron 25.0%
! TCATTGACATTTAAGGAAAT+TGG - chr5_4:58731114-58731133 Msa0860160:intron 25.0%
! TAATTGTGCTTATGGTTATT+TGG - chr5_4:58731322-58731341 Msa0860160:intron 25.0%
! TGTAACAATGTATTGAACAA+TGG - chr5_4:58731417-58731436 Msa0860160:CDS 25.0%
TGTATGAATGAGTATACGAA+GGG + chr5_4:58726110-58726129 None:intergenic 30.0%
ACATATATTGTATACTTGGG+AGG - chr5_4:58726226-58726245 Msa0860160:CDS 30.0%
GATTTACTTGCTTCAATCTT+AGG - chr5_4:58726310-58726329 Msa0860160:CDS 30.0%
!!! ACTTTTTTACGTGGATTTGT+TGG - chr5_4:58726532-58726551 Msa0860160:CDS 30.0%
!!! CTTTTTTACGTGGATTTGTT+GGG - chr5_4:58726533-58726552 Msa0860160:CDS 30.0%
! ATTTGGTGAAGATACAATCA+TGG - chr5_4:58726735-58726754 Msa0860160:intron 30.0%
ATCATGGCTAATTTAGATTC+AGG - chr5_4:58726751-58726770 Msa0860160:intron 30.0%
TTGCAGAATGTTGTATTTGA+AGG + chr5_4:58726877-58726896 None:intergenic 30.0%
TTAGAGTAAGAAATAAAGGC+TGG + chr5_4:58726927-58726946 None:intergenic 30.0%
!! AGCATTGACTTAGTCAAAAT+TGG + chr5_4:58727099-58727118 None:intergenic 30.0%
!! AGCATTGACTTTGTCAAAAT+TGG - chr5_4:58727331-58727350 Msa0860160:intron 30.0%
! ACTTTGTCAAAATTGGTCTA+GGG - chr5_4:58727338-58727357 Msa0860160:intron 30.0%
CGCAATTTCTATAAACATAG+GGG - chr5_4:58727430-58727449 Msa0860160:intron 30.0%
GCAATTTCTATAAACATAGG+GGG - chr5_4:58727431-58727450 Msa0860160:intron 30.0%
! TTTAGGCTTAATAGCAGTTT+TGG + chr5_4:58727457-58727476 None:intergenic 30.0%
TTGATTCTCATACTTCAACT+TGG - chr5_4:58727687-58727706 Msa0860160:intron 30.0%
TGATTCTCATACTTCAACTT+GGG - chr5_4:58727688-58727707 Msa0860160:intron 30.0%
!! GAGCATTGATATTGTATAGT+TGG + chr5_4:58727723-58727742 None:intergenic 30.0%
AACTAAGATCCTTGTGTATT+TGG + chr5_4:58727748-58727767 None:intergenic 30.0%
!!! GACTCATCTCTTGTTATTTT+GGG + chr5_4:58727773-58727792 None:intergenic 30.0%
!!! AGACTCATCTCTTGTTATTT+TGG + chr5_4:58727774-58727793 None:intergenic 30.0%
! AACTTTACTTAGTGTGCTTT+TGG - chr5_4:58727865-58727884 Msa0860160:intron 30.0%
TTAGCGCAAAAGTTAGTATT+TGG + chr5_4:58727963-58727982 None:intergenic 30.0%
ATTAACACTAAGTGCATGTT+TGG + chr5_4:58728036-58728055 None:intergenic 30.0%
ACGGAGAAACATAAAATGTA+AGG - chr5_4:58728111-58728130 Msa0860160:CDS 30.0%
ACATAACATAGGAATGTGTT+AGG + chr5_4:58728406-58728425 None:intergenic 30.0%
CAAAACTACGAATCACAATA+TGG - chr5_4:58728466-58728485 Msa0860160:intron 30.0%
TCACCTGATGTAACAATATT+TGG - chr5_4:58728571-58728590 Msa0860160:CDS 30.0%
TTGCCAAATATTGTTACATC+AGG + chr5_4:58728577-58728596 None:intergenic 30.0%
GATGTAACAATATTTGGCAA+CGG - chr5_4:58728577-58728596 Msa0860160:CDS 30.0%
TGATGTGATTTCAACTTCTT+TGG - chr5_4:58728735-58728754 Msa0860160:CDS 30.0%
GATGTGATTTCAACTTCTTT+GGG - chr5_4:58728736-58728755 Msa0860160:CDS 30.0%
GTGAACAAAGCTTCAATATA+TGG + chr5_4:58728772-58728791 None:intergenic 30.0%
TTCACTGATGGAATTTCAAT+TGG - chr5_4:58728787-58728806 Msa0860160:CDS 30.0%
TCACTGATGGAATTTCAATT+GGG - chr5_4:58728788-58728807 Msa0860160:CDS 30.0%
GTTTAAAGACTATGCACTAA+CGG - chr5_4:58729586-58729605 Msa0860160:intron 30.0%
! TCTGAAGCAAAAACATATAC+AGG - chr5_4:58729739-58729758 Msa0860160:intron 30.0%
ATTAAAGCCATCTCCAATTA+TGG - chr5_4:58729762-58729781 Msa0860160:intron 30.0%
!! AAAATTTCTAGTTGCGTCTA+CGG - chr5_4:58729868-58729887 Msa0860160:intron 30.0%
!!! TTTTTTCAAATCAACACCGA+CGG - chr5_4:58730084-58730103 Msa0860160:intron 30.0%
! AGGAACCTAAACTTTTATTG+CGG - chr5_4:58730134-58730153 Msa0860160:intron 30.0%
ATGTAGGATTGAAAAATAGG+TGG + chr5_4:58730250-58730269 None:intergenic 30.0%
ACAAAATAAGTGAAGAAGAG+TGG + chr5_4:58730280-58730299 None:intergenic 30.0%
!! TCAAAGATCACTCACTTTTA+AGG - chr5_4:58730687-58730706 Msa0860160:CDS 30.0%
!! CAAAGATCACTCACTTTTAA+GGG - chr5_4:58730688-58730707 Msa0860160:CDS 30.0%
CAGTAATTGAAGGATAATTG+AGG + chr5_4:58730972-58730991 None:intergenic 30.0%
CGATTATACACAGTAATTGA+AGG + chr5_4:58730982-58731001 None:intergenic 30.0%
TCAATTACTGTGTATAATCG+AGG - chr5_4:58730982-58731001 Msa0860160:CDS 30.0%
ACCAAGTTCATTGACATTTA+AGG - chr5_4:58731107-58731126 Msa0860160:intron 30.0%
TCCTTAAATGTCAATGAACT+TGG + chr5_4:58731111-58731130 None:intergenic 30.0%
AACCTTTCAGATAATTCTAG+AGG - chr5_4:58731146-58731165 Msa0860160:CDS 30.0%
TATGTGTGTAATTGTGCTTA+TGG - chr5_4:58731314-58731333 Msa0860160:intron 30.0%
CTGTATGAATGAGTATACGA+AGG + chr5_4:58726111-58726130 None:intergenic 35.0%
TACTTGCTTCAATCTTAGGA+AGG - chr5_4:58726314-58726333 Msa0860160:CDS 35.0%
! TTTTTGTAACAGCCATGAGA+AGG - chr5_4:58726409-58726428 Msa0860160:CDS 35.0%
! TTTCTTGGACTGGAAAAAGA+TGG - chr5_4:58726676-58726695 Msa0860160:CDS 35.0%
GAATTTCTCTTGATTCTGCT+TGG - chr5_4:58726701-58726720 Msa0860160:CDS 35.0%
CTAATTTAGATTCAGGCGTT+TGG - chr5_4:58726758-58726777 Msa0860160:intron 35.0%
CAAATACAACATTCTGCAAC+AGG - chr5_4:58726878-58726897 Msa0860160:intron 35.0%
GCAACTTCTTGAAACATAAG+GGG + chr5_4:58726999-58727018 None:intergenic 35.0%
CGCAACTTCTTGAAACATAA+GGG + chr5_4:58727000-58727019 None:intergenic 35.0%
TCGCAACTTCTTGAAACATA+AGG + chr5_4:58727001-58727020 None:intergenic 35.0%
! GTTTCAAGAAGTTGCGATTT+TGG - chr5_4:58727004-58727023 Msa0860160:CDS 35.0%
! ACTTAGTCAAAATTGGCCTA+GGG + chr5_4:58727092-58727111 None:intergenic 35.0%
! GACTTTGTCAAAATTGGTCT+AGG - chr5_4:58727337-58727356 Msa0860160:intron 35.0%
! CTTTGTCAAAATTGGTCTAG+GGG - chr5_4:58727339-58727358 Msa0860160:intron 35.0%
! TTTGTCAAAATTGGTCTAGG+GGG - chr5_4:58727340-58727359 Msa0860160:intron 35.0%
GATTCTCATACTTCAACTTG+GGG - chr5_4:58727689-58727708 Msa0860160:intron 35.0%
AATGCTCTACCAAATACACA+AGG - chr5_4:58727736-58727755 Msa0860160:intron 35.0%
GTTATTATCACATGGTGACA+TGG + chr5_4:58727848-58727867 None:intergenic 35.0%
TTGGTACTGCATTTGCAAAA+TGG + chr5_4:58728017-58728036 None:intergenic 35.0%
! GTGTTAATTTAGAGTCACGT+TGG - chr5_4:58728048-58728067 Msa0860160:CDS 35.0%
ACAATATTTGGCAACGGTAA+CGG - chr5_4:58728583-58728602 Msa0860160:CDS 35.0%
TAGCATCCTACAAAGTATGT+TGG - chr5_4:58728638-58728657 Msa0860160:CDS 35.0%
CTTTGACCAACATACTTTGT+AGG + chr5_4:58728647-58728666 None:intergenic 35.0%
!! ATTGAAGCTTTGTTCACTGA+TGG - chr5_4:58728775-58728794 Msa0860160:CDS 35.0%
! TGCTTTTGCTAAGAATGTTG+TGG - chr5_4:58728819-58728838 Msa0860160:CDS 35.0%
TTGCAGCTAGTACAATTGAT+AGG - chr5_4:58728914-58728933 Msa0860160:CDS 35.0%
TGCAGCTAGTACAATTGATA+GGG - chr5_4:58728915-58728934 Msa0860160:CDS 35.0%
!! ATTTTCTTTGATGGACCTGA+TGG + chr5_4:58729104-58729123 None:intergenic 35.0%
TACTTACGCATCTTGAATTG+TGG + chr5_4:58729168-58729187 None:intergenic 35.0%
ACTTGATCCTACCAAAGTAA+AGG - chr5_4:58729317-58729336 Msa0860160:intron 35.0%
CTTGATCCTACCAAAGTAAA+GGG - chr5_4:58729318-58729337 Msa0860160:intron 35.0%
ATCTTTCCCTTTACTTTGGT+AGG + chr5_4:58729327-58729346 None:intergenic 35.0%
GTGATCAATGATGAGAAAAG+TGG - chr5_4:58729429-58729448 Msa0860160:intron 35.0%
! GTACTGATGAAAACATTACC+AGG - chr5_4:58729550-58729569 Msa0860160:intron 35.0%
TAAACTCGTATGAGTTTACC+TGG + chr5_4:58729571-58729590 None:intergenic 35.0%
TAGCGAAATCTGATTGAAGA+CGG + chr5_4:58729629-58729648 None:intergenic 35.0%
AGTGCAACCATTAATACTCA+AGG - chr5_4:58729813-58729832 Msa0860160:intron 35.0%
TGTTGCCGCAATAAAAGTTT+AGG + chr5_4:58730142-58730161 None:intergenic 35.0%
ATTCCTTACAATCTGCAACA+AGG - chr5_4:58730416-58730435 Msa0860160:intron 35.0%
! GACTTTTCTACATATACTGC+AGG + chr5_4:58730669-58730688 None:intergenic 35.0%
ATAGCGACTCCATTTGAATA+TGG - chr5_4:58730781-58730800 Msa0860160:CDS 35.0%
ACTCCATTTGAATATGGTTC+TGG - chr5_4:58730787-58730806 Msa0860160:CDS 35.0%
TGTCCAGAACCATATTCAAA+TGG + chr5_4:58730793-58730812 None:intergenic 35.0%
CTTAGATCATAAACAAGTCC+TGG + chr5_4:58730841-58730860 None:intergenic 35.0%
CGAGTAACGTTTATAAGGTT+CGG + chr5_4:58731009-58731028 None:intergenic 35.0%
ATTTCCACAACATATGTGCT+AGG + chr5_4:58731054-58731073 None:intergenic 35.0%
!! TGCCTCTAGAATTATCTGAA+AGG + chr5_4:58731151-58731170 None:intergenic 35.0%
! CAGATAATTCTAGAGGCAAT+AGG - chr5_4:58731153-58731172 Msa0860160:CDS 35.0%
! CTCATGGTTTTCCAGTATTT+GGG - chr5_4:58731184-58731203 Msa0860160:CDS 35.0%
CAAGTCAATTTCCCAAATAC+TGG + chr5_4:58731198-58731217 None:intergenic 35.0%
CAGTATTTGGGAAATTGACT+TGG - chr5_4:58731196-58731215 Msa0860160:CDS 35.0%
TGAGCTTACAAGACTACTAT+AGG + chr5_4:58731249-58731268 None:intergenic 35.0%
TAAGCTCATGAATCTCTCTA+AGG - chr5_4:58731261-58731280 Msa0860160:intron 35.0%
TGTATTGAAGAATGTTCTGC+TGG - chr5_4:58731387-58731406 Msa0860160:CDS 35.0%
! ACACACTGATGCCTTTAGAA+AGG - chr5_4:58726068-58726087 Msa0860160:three_prime_UTR 40.0%
GCACATGCTTACCTTTCTAA+AGG + chr5_4:58726082-58726101 None:intergenic 40.0%
AGATCATCAAGGGAAGGATT+TGG + chr5_4:58726265-58726284 None:intergenic 40.0%
AACTCAAGATCATCAAGGGA+AGG + chr5_4:58726271-58726290 None:intergenic 40.0%
GGCTAACTCAAGATCATCAA+GGG + chr5_4:58726275-58726294 None:intergenic 40.0%
TGGCTAACTCAAGATCATCA+AGG + chr5_4:58726276-58726295 None:intergenic 40.0%
!! TTGAAGATGAAGAGGCATCA+AGG - chr5_4:58726489-58726508 Msa0860160:CDS 40.0%
AATTGCACACTACAAGGTCA+TGG - chr5_4:58726650-58726669 Msa0860160:CDS 40.0%
ATTGCACACTACAAGGTCAT+GGG - chr5_4:58726651-58726670 Msa0860160:CDS 40.0%
TTTCTCTTGATTCTGCTTGG+TGG - chr5_4:58726704-58726723 Msa0860160:CDS 40.0%
CCACTGAAACTTTCATGTTC+CGG + chr5_4:58726784-58726803 None:intergenic 40.0%
CATGAAAGTTTCAGTGGCAT+TGG - chr5_4:58726787-58726806 Msa0860160:intron 40.0%
! AGTTTCAGTGGCATTGGATA+TGG - chr5_4:58726793-58726812 Msa0860160:intron 40.0%
! GACTTAGTCAAAATTGGCCT+AGG + chr5_4:58727093-58727112 None:intergenic 40.0%
! AAATCACGACAAAAGCGCAT+GGG + chr5_4:58727931-58727950 None:intergenic 40.0%
!! TTGATAATGTGTGTGTGCCA+TGG + chr5_4:58728534-58728553 None:intergenic 40.0%
GTGATTTCAACTTCTTTGGG+TGG - chr5_4:58728739-58728758 Msa0860160:CDS 40.0%
TTGTGGTTGTTTGTTCTGCT+GGG - chr5_4:58728836-58728855 Msa0860160:CDS 40.0%
TTTGTAACACTCCTATGAGC+AGG + chr5_4:58728871-58728890 None:intergenic 40.0%
GTGTTACAAATGTTGCACCT+TGG - chr5_4:58728881-58728900 Msa0860160:CDS 40.0%
TGGTAAGCCTTTACTAAGAC+TGG + chr5_4:58729084-58729103 None:intergenic 40.0%
CTTAGTAAAGGCTTACCATC+AGG - chr5_4:58729086-58729105 Msa0860160:intron 40.0%
TTGGTAGGATCAAGTGTTCT+AGG + chr5_4:58729312-58729331 None:intergenic 40.0%
GAAACAACGTCTATTGCTCA+AGG - chr5_4:58729369-58729388 Msa0860160:intron 40.0%
GATGAAAACCCAGCCATAAT+TGG + chr5_4:58729778-58729797 None:intergenic 40.0%
! TTATGGCTGGGTTTTCATCT+AGG - chr5_4:58729779-58729798 Msa0860160:intron 40.0%
! TATGGCTGGGTTTTCATCTA+GGG - chr5_4:58729780-58729799 Msa0860160:intron 40.0%
ATTAATGGTTGCACTGCACT+AGG + chr5_4:58729808-58729827 None:intergenic 40.0%
AACTGAGATGATGTCCCAAT+CGG - chr5_4:58729986-58730005 Msa0860160:intron 40.0%
! TTATCGAACTGATGCCGATT+GGG + chr5_4:58730003-58730022 None:intergenic 40.0%
TTTATCGAACTGATGCCGAT+TGG + chr5_4:58730004-58730023 None:intergenic 40.0%
GCGGCAACATTAATCATCTT+TGG - chr5_4:58730153-58730172 Msa0860160:intron 40.0%
ACTTCAATTCTCTACCCTAG+TGG - chr5_4:58730224-58730243 Msa0860160:intron 40.0%
TGAAAAATAGGTGGCCACTA+GGG + chr5_4:58730241-58730260 None:intergenic 40.0%
TTGAAAAATAGGTGGCCACT+AGG + chr5_4:58730242-58730261 None:intergenic 40.0%
GAAGAGTGGACATTGAATGT+AGG + chr5_4:58730266-58730285 None:intergenic 40.0%
GTATCTGATGGTAGATTCGA+TGG + chr5_4:58730389-58730408 None:intergenic 40.0%
GTTGCAGATTGTAAGGAATG+CGG + chr5_4:58730415-58730434 None:intergenic 40.0%
GTTCCTTGTTGCAGATTGTA+AGG + chr5_4:58730422-58730441 None:intergenic 40.0%
TCAAGACACTTCATCCTAGT+TGG - chr5_4:58730483-58730502 Msa0860160:intron 40.0%
AAATCTGCCATCATGACTAC+CGG - chr5_4:58730521-58730540 Msa0860160:intron 40.0%
TAAGATACCGGTAGTCATGA+TGG + chr5_4:58730531-58730550 None:intergenic 40.0%
TATTCAGCCTAACCTTGCAA+TGG - chr5_4:58730813-58730832 Msa0860160:CDS 40.0%
CGGTACGAGTAACGTTTATA+AGG + chr5_4:58731014-58731033 None:intergenic 40.0%
AATACTGGAAAACCATGAGG+AGG + chr5_4:58731183-58731202 None:intergenic 40.0%
CCAAATACTGGAAAACCATG+AGG + chr5_4:58731186-58731205 None:intergenic 40.0%
! CCTCATGGTTTTCCAGTATT+TGG - chr5_4:58731183-58731202 Msa0860160:CDS 40.0%
!! GGGAAATTGACTTGGACAAA+TGG - chr5_4:58731204-58731223 Msa0860160:CDS 40.0%
!! CTATAGGACTAGTTACTCTG+TGG + chr5_4:58731233-58731252 None:intergenic 40.0%
TACTTGGGAGGACATTCTCA+TGG - chr5_4:58726238-58726257 Msa0860160:CDS 45.0%
TAACAGCCATGAGAAGGCAA+AGG - chr5_4:58726415-58726434 Msa0860160:CDS 45.0%
CTGTTTCCTTTGCCTTCTCA+TGG + chr5_4:58726424-58726443 None:intergenic 45.0%
TGCACTGCTTGAAGATGAAG+AGG - chr5_4:58726481-58726500 Msa0860160:CDS 45.0%
ACAAGGTCATGGGACTTTCT+TGG - chr5_4:58726661-58726680 Msa0860160:CDS 45.0%
! CTTGGACTGGAAAAAGATGG+AGG - chr5_4:58726679-58726698 Msa0860160:CDS 45.0%
! TCTTGATTCTGCTTGGTGGA+AGG - chr5_4:58726708-58726727 Msa0860160:CDS 45.0%
TTTAGATTCAGGCGTTTGGC+CGG - chr5_4:58726762-58726781 Msa0860160:intron 45.0%
CCGGAACATGAAAGTTTCAG+TGG - chr5_4:58726781-58726800 Msa0860160:intron 45.0%
TGCAAAGGGGGCAAAACAAA+GGG + chr5_4:58727060-58727079 None:intergenic 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG - chr5_4:58727064-58727083 Msa0860160:CDS 45.0%
! TAGGGAGCCAAAAGTGCAAA+GGG + chr5_4:58727074-58727093 None:intergenic 45.0%
TGACAAAGTCAATGCTGACG+TGG + chr5_4:58727327-58727346 None:intergenic 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG + chr5_4:58727064-58727083 None:intergenic 45.0%
TGCAAAGGGGGCAAAACATA+AGG - chr5_4:58727370-58727389 Msa0860160:intron 45.0%
GCAAAGGGGGCAAAACATAA+GGG - chr5_4:58727371-58727390 Msa0860160:intron 45.0%
CAAAGGGGGCAAAACATAAG+GGG - chr5_4:58727372-58727391 Msa0860160:intron 45.0%
! AATCACGACAAAAGCGCATG+GGG + chr5_4:58727930-58727949 None:intergenic 45.0%
! GAAATCACGACAAAAGCGCA+TGG + chr5_4:58727932-58727951 None:intergenic 45.0%
!! AACATCTACGGTGTCGTGTA+TGG - chr5_4:58728302-58728321 Msa0860160:CDS 45.0%
CAATAAAGTCACGTGCTGTG+AGG + chr5_4:58728510-58728529 None:intergenic 45.0%
CTCACAGCACGTGACTTTAT+TGG - chr5_4:58728508-58728527 Msa0860160:CDS 45.0%
CACACATTATCAACAGCAGC+AGG - chr5_4:58728541-58728560 Msa0860160:CDS 45.0%
TGTTGGTCAAAGACAGATGC+AGG - chr5_4:58728655-58728674 Msa0860160:CDS 45.0%
GTTGTGGTTGTTTGTTCTGC+TGG - chr5_4:58728835-58728854 Msa0860160:CDS 45.0%
GTTTGTTCTGCTGGGAATGA+TGG - chr5_4:58728844-58728863 Msa0860160:CDS 45.0%
TCTAGGCTTGCAAAAACGAC+TGG + chr5_4:58729295-58729314 None:intergenic 45.0%
TCCTTTACCTGGTGCAAGTA+TGG - chr5_4:58729476-58729495 Msa0860160:intron 45.0%
TCCATACTTGCACCAGGTAA+AGG + chr5_4:58729480-58729499 None:intergenic 45.0%
TGCAAGTATGGATGCCAATG+AGG - chr5_4:58729488-58729507 Msa0860160:intron 45.0%
ATCGATATCCTCGTCCTCAT+TGG + chr5_4:58729505-58729524 None:intergenic 45.0%
AAGCCATCTCCAATTATGGC+TGG - chr5_4:58729766-58729785 Msa0860160:intron 45.0%
AGCCATCTCCAATTATGGCT+GGG - chr5_4:58729767-58729786 Msa0860160:intron 45.0%
AACCCAGCCATAATTGGAGA+TGG + chr5_4:58729772-58729791 None:intergenic 45.0%
! ATGGCTGGGTTTTCATCTAG+GGG - chr5_4:58729781-58729800 Msa0860160:intron 45.0%
TAGGTTCCTCCACATCCTTA+GGG + chr5_4:58730123-58730142 None:intergenic 45.0%
TTAGGTTCCTCCACATCCTT+AGG + chr5_4:58730124-58730143 None:intergenic 45.0%
TGCTCCTGGAGTGAACATAT+TGG - chr5_4:58730340-58730359 Msa0860160:intron 45.0%
TGATGGTAGATTCGATGGAC+TGG + chr5_4:58730384-58730403 None:intergenic 45.0%
ATGTCTTGTCCTCATGTTGC+TGG - chr5_4:58730446-58730465 Msa0860160:intron 45.0%
! TGGCAGATTTGATAGCAGCT+GGG + chr5_4:58730511-58730530 None:intergenic 45.0%
! ATGGCAGATTTGATAGCAGC+TGG + chr5_4:58730512-58730531 None:intergenic 45.0%
TTATCGAACGCGTCTCTGAT+TGG + chr5_4:58730760-58730779 None:intergenic 45.0%
ACTCGTACCGTCACAAATGT+TGG - chr5_4:58731024-58731043 Msa0860160:intron 45.0%
CTCGTACCGTCACAAATGTT+GGG - chr5_4:58731025-58731044 Msa0860160:intron 45.0%
AGGAGACCCAACATTTGTGA+CGG + chr5_4:58731034-58731053 None:intergenic 45.0%
GTCTCCTAGCACATATGTTG+TGG - chr5_4:58731047-58731066 Msa0860160:intron 45.0%
!! AAAAAATGAAATTAATTATA+TGG + chr5_4:58727613-58727632 None:intergenic 5.0%
GTCATGGGACTTTCTTGGAC+TGG - chr5_4:58726666-58726685 Msa0860160:CDS 50.0%
! GCTTGGTGGAAGGCAAGATT+TGG - chr5_4:58726718-58726737 Msa0860160:intron 50.0%
ATGGTCCAGTGCCATCAAAG+TGG - chr5_4:58726812-58726831 Msa0860160:intron 50.0%
CATCAAAGTGGCGTGGGAAT+GGG - chr5_4:58726824-58726843 Msa0860160:intron 50.0%
ATCAAAGTGGCGTGGGAATG+GGG - chr5_4:58726825-58726844 Msa0860160:intron 50.0%
CAAAGGGGGCAAAACAAAGG+GGG + chr5_4:58727058-58727077 None:intergenic 50.0%
GCAAAGGGGGCAAAACAAAG+GGG + chr5_4:58727059-58727078 None:intergenic 50.0%
GTGCAAAGGGGGCAAAACAA+AGG + chr5_4:58727061-58727080 None:intergenic 50.0%
! AGGGAGCCAAAAGTGCAAAG+GGG + chr5_4:58727073-58727092 None:intergenic 50.0%
! CTAGGGAGCCAAAAGTGCAA+AGG + chr5_4:58727075-58727094 None:intergenic 50.0%
!!! CTTTGCACTTTTGGCTCCCT+AGG - chr5_4:58727073-58727092 Msa0860160:CDS 50.0%
! TAGGGGGCCAAAAGTGCAAA+GGG - chr5_4:58727356-58727375 Msa0860160:intron 50.0%
TCACGTGCTGTGAGGTTTGA+GGG + chr5_4:58728502-58728521 None:intergenic 50.0%
GCACGTGACTTTATTGGCCA+TGG - chr5_4:58728514-58728533 Msa0860160:CDS 50.0%
AGGATGCTACACGTGCTCTA+GGG + chr5_4:58728627-58728646 None:intergenic 50.0%
TAGGATGCTACACGTGCTCT+AGG + chr5_4:58728628-58728647 None:intergenic 50.0%
TGGTCAAAGACAGATGCAGG+TGG - chr5_4:58728658-58728677 Msa0860160:CDS 50.0%
!! GGAATGATGGACCTGCTCAT+AGG - chr5_4:58728857-58728876 Msa0860160:CDS 50.0%
GCTGCAACAGTGAAAGACCA+AGG + chr5_4:58728901-58728920 None:intergenic 50.0%
! CAGGGTGCCAGTCTTAGTAA+AGG - chr5_4:58729074-58729093 Msa0860160:intron 50.0%
GCTGAACCTCATCCTTTACC+TGG - chr5_4:58729465-58729484 Msa0860160:intron 50.0%
CTTGCACCAGGTAAAGGATG+AGG + chr5_4:58729474-58729493 None:intergenic 50.0%
TTGGCATCCATACTTGCACC+AGG + chr5_4:58729486-58729505 None:intergenic 50.0%
TATGGATGCCAATGAGGACG+AGG - chr5_4:58729494-58729513 Msa0860160:intron 50.0%
AGGATATCGATGAGCGTGAG+TGG - chr5_4:58729514-58729533 Msa0860160:intron 50.0%
ATCGATGAGCGTGAGTGGTT+TGG - chr5_4:58729519-58729538 Msa0860160:intron 50.0%
! GAGCGTGAGTGGTTTGGAAA+AGG - chr5_4:58729525-58729544 Msa0860160:intron 50.0%
! CGTGAGTGGTTTGGAAAAGG+TGG - chr5_4:58729528-58729547 Msa0860160:intron 50.0%
! TTCTAGTTGCGTCTACGGTG+AGG - chr5_4:58729873-58729892 Msa0860160:intron 50.0%
ACTCCAGGAGCAGTTATGTC+AGG + chr5_4:58730332-58730351 None:intergenic 50.0%
GCAGCCAATATGTTCACTCC+AGG + chr5_4:58730347-58730366 None:intergenic 50.0%
!! TGGTAGATTCGATGGACTGG+TGG + chr5_4:58730381-58730400 None:intergenic 50.0%
CCTGGATCCATTGCAAGGTT+AGG + chr5_4:58730823-58730842 None:intergenic 50.0%
CCTAACCTTGCAATGGATCC+AGG - chr5_4:58730820-58730839 Msa0860160:CDS 50.0%
CAAGTCCTGGATCCATTGCA+AGG + chr5_4:58730828-58730847 None:intergenic 50.0%
GCAATAGGTATGCCTCCTCA+TGG - chr5_4:58731168-58731187 Msa0860160:CDS 50.0%
CAGTGCCATCAAAGTGGCGT+GGG - chr5_4:58726818-58726837 Msa0860160:intron 55.0%
! CCATTCCCACGCCACTTTGA+TGG + chr5_4:58726826-58726845 None:intergenic 55.0%
CCATCAAAGTGGCGTGGGAA+TGG - chr5_4:58726823-58726842 Msa0860160:intron 55.0%
! GGGAGCCAAAAGTGCAAAGG+GGG + chr5_4:58727072-58727091 None:intergenic 55.0%
! CTAGGGGGCCAAAAGTGCAA+AGG - chr5_4:58727355-58727374 Msa0860160:intron 55.0%
! AGGGGGCCAAAAGTGCAAAG+GGG - chr5_4:58727357-58727376 Msa0860160:intron 55.0%
GTCACGTGCTGTGAGGTTTG+AGG + chr5_4:58728503-58728522 None:intergenic 55.0%
! AACGGTAACGGCACAGCGAA+AGG - chr5_4:58728595-58728614 Msa0860160:CDS 55.0%
GGATGCTACACGTGCTCTAG+GGG + chr5_4:58728626-58728645 None:intergenic 55.0%
!! GGCTTTGAAGCTGCTCTTGC+AGG - chr5_4:58729390-58729409 Msa0860160:intron 55.0%
CTGCTCTTGCAGGAGCTGTA+GGG - chr5_4:58729400-58729419 Msa0860160:intron 55.0%
GGATCACTGTCTCAGCCCTA+AGG - chr5_4:58730105-58730124 Msa0860160:intron 55.0%
CTGTCTCAGCCCTAAGGATG+TGG - chr5_4:58730111-58730130 Msa0860160:intron 55.0%
TCTCAGCCCTAAGGATGTGG+AGG - chr5_4:58730114-58730133 Msa0860160:intron 55.0%
CAGCCTGACATAACTGCTCC+TGG - chr5_4:58730326-58730345 Msa0860160:intron 55.0%
GGAATGCGGCGTGTATCTGA+TGG + chr5_4:58730401-58730420 None:intergenic 55.0%
CCAGCAATGCCAGCAACATG+AGG + chr5_4:58730458-58730477 None:intergenic 55.0%
CCTCATGTTGCTGGCATTGC+TGG - chr5_4:58730455-58730474 Msa0860160:intron 55.0%
ATAGCAGCTGGGCTCCAACT+AGG + chr5_4:58730500-58730519 None:intergenic 55.0%
! CCACGCCACTTTGATGGCAC+TGG + chr5_4:58726820-58726839 None:intergenic 60.0%
CCAGTGCCATCAAAGTGGCG+TGG - chr5_4:58726817-58726836 Msa0860160:intron 60.0%
! GGGGGCCAAAAGTGCAAAGG+GGG - chr5_4:58727358-58727377 Msa0860160:intron 60.0%
! GGTAACGGCACAGCGAAAGG+TGG - chr5_4:58728598-58728617 Msa0860160:CDS 60.0%
GCTGCTCTTGCAGGAGCTGT+AGG - chr5_4:58729399-58729418 Msa0860160:intron 60.0%
GGGCTGAGACAGTGATCCGT+CGG + chr5_4:58730103-58730122 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 58726006 58731454 58726006 ID=Msa0860160;Name=Msa0860160
chr5_4 mRNA 58726006 58731454 58726006 ID=Msa0860160-mRNA-1;Parent=Msa0860160;Name=Msa0860160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.55|0.5|1|1|1|10|191|742
chr5_4 exon 58726006 58726729 58726006 ID=Msa0860160-mRNA-1:exon:17958;Parent=Msa0860160-mRNA-1
chr5_4 exon 58726918 58727131 58726918 ID=Msa0860160-mRNA-1:exon:17957;Parent=Msa0860160-mRNA-1
chr5_4 exon 58727647 58727699 58727647 ID=Msa0860160-mRNA-1:exon:17956;Parent=Msa0860160-mRNA-1
chr5_4 exon 58727968 58728164 58727968 ID=Msa0860160-mRNA-1:exon:17955;Parent=Msa0860160-mRNA-1
chr5_4 exon 58728280 58728383 58728280 ID=Msa0860160-mRNA-1:exon:17954;Parent=Msa0860160-mRNA-1
chr5_4 exon 58728479 58729022 58728479 ID=Msa0860160-mRNA-1:exon:17953;Parent=Msa0860160-mRNA-1
chr5_4 exon 58730561 58730852 58730561 ID=Msa0860160-mRNA-1:exon:17952;Parent=Msa0860160-mRNA-1
chr5_4 exon 58730942 58731039 58730942 ID=Msa0860160-mRNA-1:exon:17951;Parent=Msa0860160-mRNA-1
chr5_4 exon 58731125 58731234 58731125 ID=Msa0860160-mRNA-1:exon:17950;Parent=Msa0860160-mRNA-1
chr5_4 exon 58731371 58731454 58731371 ID=Msa0860160-mRNA-1:exon:17949;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58731371 58731454 58731371 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58731125 58731234 58731125 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58730942 58731039 58730942 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58730561 58730852 58730561 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58728479 58729022 58728479 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58728280 58728383 58728280 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58727968 58728164 58727968 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58727647 58727699 58727647 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58726918 58727131 58726918 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 CDS 58726197 58726729 58726197 ID=Msa0860160-mRNA-1:cds;Parent=Msa0860160-mRNA-1
chr5_4 three_prime_UTR 58726006 58726196 58726006 ID=Msa0860160-mRNA-1:three_prime_utr;Parent=Msa0860160-mRNA-1
Gene Sequence

>Msa0860160

ATGTCATATCCTATTACCAAACTTTTTCTATCATCATTCATTCTTTGCAGTTTCTTGCTAGAACACACTGATGCCTTTAGAAAGACATATATTGTATACTTGGGAGGACATTCTCATGGTCCAAATCCTTCCCTTGATGATCTTGAGTTAGCCACAAATTCACATTATGATTTACTTGCTTCAATCTTAGGAAGCCATGAGAAGGCAAAGGAAACAGTGATGTACTCTTACAATAAGCATATCAATGGATTTGCTGCACTGCTTGAAGATGAAGAGGCATCAAGGATTGCAAATAACTCAAATGTAGTTTCTGTTTTCTTGAGCAAAGAATATAAATTGCACACTACAAGGTCATGGGACTTTCTTGGACTGGAAAAAGATGGAGGAATTTCTCTTGATTCTGCTTGGTGGAAGGCAAGATTTGGTGAAGATACAATCATGGCTAATTTAGATTCAGGCGTTTGGCCGGAACATGAAAGTTTCAGTGGCATTGGATATGGTCCAGTGCCATCAAAGTGGCGTGGGAATGGGGTCTGTGAGATTGATCATTTAATTACACCTTCAAATACAACATTCTGCAACAGAAAACTAATTGGAGCAAGAATATTCAGTCAAAACTACGAATCACAATATGGAAAACTCAATCCCTCAAACCTCACAGCACGTGACTTTATTGGCCATGGCACACACACATTATCAACAGCAGCAGGTAACTTTTCACCTGATGTAACAATATTTGGCAACGGTAACGGCACAGCGAAAGGTGGTTCCCCTAGAGCACGTGTAGCATCCTACAAAGTATGTTGGTCAAAGACAGATGCAGGTGGATGTCATGAAGCTGATATTCTAGCAGCATTTGATCAAGCTATATATGATGGTGTTGATGTGATTTCAACTTCTTTGGGTGGCTCTAGTCCATATATTGAAGCTTTGTTCACTGATGGAATTTCAATTGGGTCATTTCATGCTTTTGCTAAGAATGTTGTGGTTGTTTGTTCTGCTGGGAATGATGGACCTGCTCATAGGAGTGTTACAAATGTTGCACCTTGGTCTTTCACTGTTGCAGCTAGTACAATTGATAGGGAATTTGTTAGCCATATTTCTATTGGTAACAAAAATTACATAAAGGGTGCCAGTCTTAGTAAAGGCTTACCATCAGGTCCATCAAAGAAAATATATCAAATGATTCATTCTATCGATGCTAGACTTCTTAATGCCACAATTCAAGATGCTCGTTTTTGCAAGCCTAGAACACTTGATCCTACCAAAGTAAAGGGAAAGATATTAGTTTGTACTCGACTTGACGAAACAACGTCTATTGCTCAAGGCTTTGAAGCTGCTCTTGCAGGAGCTGTAGGGATTTTTGTGATCAATGATGAGAAAAGTGGAAGTTTACTTCTAGCTGAACCTCATCCTTTACCTGGTGCAAGATTAAAGCCATCTCCAATTATGGCTGGGTTTTCATCTAGGGGTCCTAGTGCACCTGACATAACTGCTCCTGGAGTGAACATATTGGCTGCTTATTCACTAGCCACCAGTCCATCGAATCTACCATCAGATACACGCCGCATTCCTTACAATCTGCAACAAGGAACTTCAATGTCTTGTCCTCATGTTGCTGGCATTGCTGGTCTTCTCAAGACACTTCATCCTAGTTGGAGCCCAGCTGCTATCAAATCTGCCATCATGACTACCGCTACAACACTAGATAACAACAATCAACCAATCAGAGACGCGTTCGATAAGATAGCGACTCCATTTGAATATGGTTCTGGACATATTCAGCCTAACCTTGCAATGGATCCAGGACTTGTTTATGATCTAAGCACAAATGATTACTTGAACTTCATTTGTGTTTTTGGTCACAGTCACAATTTATTAAAGTTCTTTAATTACAACTCTTACATTTGTCCTGAGTTTTACAACATTGAAAACCTCAATTATCCTTCAATTACTGTGTATAATCGAGGACCGAACCTTATAAACGTTACTCGTACCGTCACAAATGTTGGGTCTCCTAGCACATATGTTGTGGAAATTCAACAACTTGAAGAATTTAAGGTTCATGTTCAACCAAGTTCATTGACATTTAAGGAAATTGGAGAAAAGAAAACCTTTCAGATAATTCTAGAGGCAATAGGTATGCCTCCTCATGGTTTTCCAGTATTTGGGAAATTGACTTGGACAAATGGCAACCACAGAGTAACTAGTCCTATAGTAGTCTTGTAA
Protein sequence

>Msa0860160

MSYPITKLFLSSFILCSFLLEHTDAFRKTYIVYLGGHSHGPNPSLDDLELATNSHYDLLASILGSHEKAKETVMYSYNKHINGFAALLEDEEASRIANNSNVVSVFLSKEYKLHTTRSWDFLGLEKDGGISLDSAWWKARFGEDTIMANLDSGVWPEHESFSGIGYGPVPSKWRGNGVCEIDHLITPSNTTFCNRKLIGARIFSQNYESQYGKLNPSNLTARDFIGHGTHTLSTAAGNFSPDVTIFGNGNGTAKGGSPRARVASYKVCWSKTDAGGCHEADILAAFDQAIYDGVDVISTSLGGSSPYIEALFTDGISIGSFHAFAKNVVVVCSAGNDGPAHRSVTNVAPWSFTVAASTIDREFVSHISIGNKNYIKGASLSKGLPSGPSKKIYQMIHSIDARLLNATIQDARFCKPRTLDPTKVKGKILVCTRLDETTSIAQGFEAALAGAVGIFVINDEKSGSLLLAEPHPLPGARLKPSPIMAGFSSRGPSAPDITAPGVNILAAYSLATSPSNLPSDTRRIPYNLQQGTSMSCPHVAGIAGLLKTLHPSWSPAAIKSAIMTTATTLDNNNQPIRDAFDKIATPFEYGSGHIQPNLAMDPGLVYDLSTNDYLNFICVFGHSHNLLKFFNYNSYICPEFYNIENLNYPSITVYNRGPNLINVTRTVTNVGSPSTYVVEIQQLEEFKVHVQPSSLTFKEIGEKKTFQIILEAIGMPPHGFPVFGKLTWTNGNHRVTSPIVVL*