Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999700 | XP_003620607.2 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999700 | sp|Q9LV40|ROGF8_ARATH | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999700 | F6LPV1 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104500 | Msa0999700 | 0.805170 | 1.519439e-49 | -8.615850e-47 |
| Msa0669840 | Msa0999700 | 0.826859 | 2.152174e-54 | -8.615850e-47 |
| Msa0725860 | Msa0999700 | 0.802300 | 5.989694e-49 | -8.615850e-47 |
| Msa0739470 | Msa0999700 | 0.809894 | 1.509707e-50 | -8.615850e-47 |
| Msa0739480 | Msa0999700 | 0.809942 | 1.474338e-50 | -8.615850e-47 |
| Msa0786040 | Msa0999700 | 0.840849 | 6.787733e-58 | -8.615850e-47 |
| Msa0823400 | Msa0999700 | 0.806313 | 8.741457e-50 | -8.615850e-47 |
| Msa0124130 | Msa0999700 | 0.832429 | 9.499833e-56 | -8.615850e-47 |
| Msa0149140 | Msa0999700 | 0.800718 | 1.263650e-48 | -8.615850e-47 |
| Msa0206800 | Msa0999700 | 0.811569 | 6.557239e-51 | -8.615850e-47 |
| Msa0221290 | Msa0999700 | 0.800241 | 1.580952e-48 | -8.615850e-47 |
| Msa0373960 | Msa0999700 | 0.858551 | 7.623992e-63 | -8.615850e-47 |
| Msa0406000 | Msa0999700 | 0.832227 | 1.066067e-55 | -8.615850e-47 |
| Msa0423100 | Msa0999700 | 0.852126 | 5.664821e-61 | -8.615850e-47 |
| Msa0424340 | Msa0999700 | 0.821420 | 4.075508e-53 | -8.615850e-47 |
| Msa0441590 | Msa0999700 | 0.811640 | 6.327657e-51 | -8.615850e-47 |
| Msa0451400 | Msa0999700 | 0.829094 | 6.236812e-55 | -8.615850e-47 |
| Msa0469260 | Msa0999700 | 0.817707 | 2.868003e-52 | -8.615850e-47 |
| Msa0996270 | Msa0999700 | 0.810362 | 1.197074e-50 | -8.615850e-47 |
| Msa0999300 | Msa0999700 | 0.813899 | 2.025961e-51 | -8.615850e-47 |
| Msa0999340 | Msa0999700 | 0.886420 | 3.474239e-72 | -8.615850e-47 |
| Msa0999350 | Msa0999700 | 0.867614 | 1.201675e-65 | -8.615850e-47 |
| Msa0999360 | Msa0999700 | 0.844516 | 7.203249e-59 | -8.615850e-47 |
| Msa0999390 | Msa0999700 | 0.892470 | 1.541595e-74 | -8.615850e-47 |
| Msa0999400 | Msa0999700 | 0.859122 | 5.145966e-63 | -8.615850e-47 |
| Msa0999410 | Msa0999700 | 0.850582 | 1.546602e-60 | -8.615850e-47 |
| Msa0999700 | Msa1084520 | 0.821180 | 4.630058e-53 | -8.615850e-47 |
| Msa0999700 | Msa1092020 | 0.805326 | 1.408693e-49 | -8.615850e-47 |
| Msa0999700 | Msa1125810 | 0.812305 | 4.532145e-51 | -8.615850e-47 |
| Msa0999700 | Msa1171310 | 0.810572 | 1.078181e-50 | -8.615850e-47 |
| Msa0999700 | Msa1201110 | 0.825349 | 4.919597e-54 | -8.615850e-47 |
| Msa0999700 | Msa1201160 | 0.842140 | 3.101027e-58 | -8.615850e-47 |
| Msa0999700 | Msa1228190 | 0.875027 | 4.257697e-68 | -8.615850e-47 |
| Msa0999700 | Msa1233560 | 0.807353 | 5.268331e-50 | -8.615850e-47 |
| Msa0999700 | Msa1260610 | 0.809379 | 1.948332e-50 | -8.615850e-47 |
| Msa0999700 | Msa1271260 | 0.861947 | 7.172088e-64 | -8.615850e-47 |
| Msa0999700 | Msa1275250 | 0.814752 | 1.312811e-51 | -8.615850e-47 |
| Msa0999700 | Msa1292010 | 0.805088 | 1.580555e-49 | -8.615850e-47 |
| Msa0999700 | Msa1294290 | 0.856731 | 2.638777e-62 | -8.615850e-47 |
| Msa0999700 | Msa1313970 | 0.803062 | 4.170843e-49 | -8.615850e-47 |
| Msa0999700 | Msa1326630 | 0.802375 | 5.778948e-49 | -8.615850e-47 |
| Msa0999700 | Msa1339440 | 0.815958 | 7.081449e-52 | -8.615850e-47 |
| Msa0999700 | Msa1389050 | 0.968888 | 2.537825e-129 | -8.615850e-47 |
| Msa0999700 | Msa1435480 | 0.840530 | 8.228276e-58 | -8.615850e-47 |
| Msa0999700 | Msa1458910 | 0.835963 | 1.235801e-56 | -8.615850e-47 |
| Msa0999700 | Msa1462530 | 0.805687 | 1.183433e-49 | -8.615850e-47 |
| Msa0252770 | Msa0999700 | 0.814298 | 1.654625e-51 | -8.615850e-47 |
| Msa0280750 | Msa0999700 | 0.800055 | 1.724537e-48 | -8.615850e-47 |
| Msa0288200 | Msa0999700 | 0.800235 | 1.585271e-48 | -8.615850e-47 |
| Msa0291330 | Msa0999700 | 0.809144 | 2.187450e-50 | -8.615850e-47 |
| Msa0322830 | Msa0999700 | 0.806585 | 7.657302e-50 | -8.615850e-47 |
| Msa0322860 | Msa0999700 | 0.810914 | 9.096146e-51 | -8.615850e-47 |
| Msa0329460 | Msa0999700 | 0.806885 | 6.619991e-50 | -8.615850e-47 |
| Msa0329620 | Msa0999700 | 0.820465 | 6.760329e-53 | -8.615850e-47 |
| Msa0351770 | Msa0999700 | 0.819453 | 1.152494e-52 | -8.615850e-47 |
| Msa0359250 | Msa0999700 | 0.816963 | 4.216071e-52 | -8.615850e-47 |
| Msa0492190 | Msa0999700 | 0.817720 | 2.848028e-52 | -8.615850e-47 |
| Msa0515950 | Msa0999700 | 0.803881 | 2.820675e-49 | -8.615850e-47 |
| Msa0534930 | Msa0999700 | 0.818525 | 1.873374e-52 | -8.615850e-47 |
| Msa0546830 | Msa0999700 | 0.816291 | 5.966011e-52 | -8.615850e-47 |
| Msa0575740 | Msa0999700 | 0.800402 | 1.466064e-48 | -8.615850e-47 |
| Msa0591790 | Msa0999700 | 0.820587 | 6.338036e-53 | -8.615850e-47 |
| Msa0591800 | Msa0999700 | 0.857516 | 1.547942e-62 | -8.615850e-47 |
| Msa0860170 | Msa0999700 | 0.826112 | 3.243030e-54 | -8.615850e-47 |
| Msa0862310 | Msa0999700 | 0.809282 | 2.043532e-50 | -8.615850e-47 |
| Msa0876560 | Msa0999700 | 0.808598 | 2.863497e-50 | -8.615850e-47 |
| Msa0899950 | Msa0999700 | 0.947033 | 1.474556e-105 | -8.615850e-47 |
| Msa0927120 | Msa0999700 | 0.895856 | 6.437979e-76 | -8.615850e-47 |
| Msa0929870 | Msa0999700 | 0.815173 | 1.058994e-51 | -8.615850e-47 |
| Msa0941820 | Msa0999700 | 0.839040 | 2.009937e-57 | -8.615850e-47 |
| Msa0961560 | Msa0999700 | 0.822112 | 2.819342e-53 | -8.615850e-47 |
| Msa0964840 | Msa0999700 | 0.825444 | 4.671115e-54 | -8.615850e-47 |
| Msa0965310 | Msa0999700 | 0.974888 | 5.900287e-139 | -8.615850e-47 |
| Msa0979510 | Msa0999700 | 0.802408 | 5.690089e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999700 | MtrunA17_Chr6g0485861 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Msa0999700 | MtrunA17_Chr2g0331631 | 60.413 | 533 | 173 | 12 | 6 | 527 | 28 | 533 | 0.0 | 580 |
| Msa0999700 | MtrunA17_Chr4g0004771 | 64.579 | 463 | 143 | 11 | 74 | 527 | 90 | 540 | 0.0 | 572 |
| Msa0999700 | MtrunA17_Chr7g0240501 | 52.451 | 408 | 156 | 5 | 73 | 460 | 183 | 572 | 1.34e-142 | 425 |
| Msa0999700 | MtrunA17_Chr4g0008771 | 53.704 | 378 | 159 | 4 | 62 | 424 | 84 | 460 | 1.41e-135 | 404 |
| Msa0999700 | MtrunA17_Chr4g0038651 | 52.533 | 375 | 160 | 5 | 73 | 430 | 86 | 459 | 1.76e-131 | 394 |
| Msa0999700 | MtrunA17_Chr3g0112731 | 50.653 | 383 | 163 | 5 | 73 | 436 | 99 | 474 | 4.29e-130 | 391 |
| Msa0999700 | MtrunA17_Chr5g0436141 | 51.316 | 380 | 159 | 5 | 76 | 436 | 84 | 456 | 8.58e-130 | 390 |
| Msa0999700 | MtrunA17_Chr8g0348921 | 47.074 | 376 | 174 | 5 | 73 | 424 | 96 | 470 | 6.00e-119 | 358 |
| Msa0999700 | MtrunA17_Chr7g0247761 | 43.780 | 418 | 167 | 7 | 74 | 424 | 113 | 529 | 1.41e-109 | 336 |
| Msa0999700 | MtrunA17_Chr5g0408591 | 45.378 | 357 | 183 | 6 | 73 | 419 | 117 | 471 | 9.81e-98 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999700 | AT3G24620.1 | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Msa0999700 | AT4G13240.1 | 62.979 | 470 | 150 | 7 | 65 | 527 | 65 | 517 | 0.0 | 575 |
| Msa0999700 | AT1G79860.1 | 62.582 | 457 | 127 | 11 | 78 | 527 | 96 | 515 | 0.0 | 541 |
| Msa0999700 | AT1G52240.1 | 61.894 | 454 | 150 | 7 | 78 | 527 | 108 | 542 | 0.0 | 538 |
| Msa0999700 | AT5G19560.1 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa0999700 | AT5G19560.5 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa0999700 | AT5G19560.4 | 57.328 | 464 | 176 | 7 | 73 | 527 | 62 | 512 | 7.19e-174 | 500 |
| Msa0999700 | AT3G16130.1 | 50.962 | 520 | 213 | 11 | 19 | 525 | 44 | 534 | 3.23e-164 | 477 |
| Msa0999700 | AT5G19560.2 | 63.855 | 332 | 116 | 2 | 59 | 387 | 48 | 378 | 3.38e-148 | 430 |
| Msa0999700 | AT5G02010.1 | 48.798 | 416 | 189 | 6 | 73 | 465 | 69 | 483 | 1.01e-137 | 409 |
| Msa0999700 | AT4G38430.1 | 52.073 | 386 | 165 | 5 | 73 | 439 | 89 | 473 | 4.15e-135 | 403 |
| Msa0999700 | AT5G05940.1 | 50.943 | 371 | 160 | 4 | 74 | 423 | 102 | 471 | 1.39e-128 | 388 |
| Msa0999700 | AT5G19560.3 | 55.108 | 372 | 145 | 7 | 165 | 527 | 5 | 363 | 7.35e-128 | 377 |
| Msa0999700 | AT4G00460.2 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa0999700 | AT4G00460.4 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa0999700 | AT3G55660.1 | 45.192 | 416 | 190 | 7 | 37 | 418 | 57 | 468 | 2.15e-118 | 361 |
| Msa0999700 | AT1G01700.1 | 44.731 | 427 | 207 | 8 | 20 | 419 | 54 | 478 | 4.01e-117 | 354 |
| Msa0999700 | AT2G45890.1 | 47.185 | 373 | 170 | 6 | 74 | 424 | 93 | 460 | 2.96e-114 | 346 |
| Msa0999700 | AT1G01700.4 | 41.794 | 457 | 207 | 9 | 20 | 419 | 54 | 508 | 1.65e-110 | 338 |
| Msa0999700 | AT5G05940.2 | 49.552 | 335 | 147 | 4 | 74 | 387 | 102 | 435 | 6.06e-110 | 336 |
| Msa0999700 | AT3G55660.2 | 43.636 | 385 | 179 | 7 | 37 | 387 | 57 | 437 | 3.98e-103 | 317 |
| Msa0999700 | AT4G00460.3 | 47.401 | 327 | 153 | 6 | 111 | 419 | 8 | 333 | 2.41e-101 | 309 |
| Msa0999700 | AT1G31650.2 | 42.204 | 372 | 201 | 5 | 74 | 434 | 108 | 476 | 1.56e-96 | 303 |
| Msa0999700 | AT1G01700.3 | 41.832 | 404 | 199 | 9 | 20 | 389 | 54 | 455 | 2.68e-96 | 300 |
| Msa0999700 | AT1G31650.1 | 42.204 | 372 | 201 | 5 | 74 | 434 | 136 | 504 | 4.18e-96 | 303 |
| Msa0999700 | AT4G00460.1 | 52.535 | 217 | 93 | 3 | 74 | 281 | 104 | 319 | 4.34e-73 | 236 |
| Msa0999700 | AT1G01700.5 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
| Msa0999700 | AT1G01700.2 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
Find 111 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTAACATTGTCTTTC+TGG | 0.080935 | 6_4:+82036403 | None:intergenic |
| TTGTTATCACCTTGTTATAT+TGG | 0.258055 | 6_4:+82035811 | None:intergenic |
| CCATGGCTGCTTTAAGTACT+TGG | 0.282520 | 6_4:+82036385 | None:intergenic |
| TTGAAGCTTCTATTGTAATA+TGG | 0.285225 | 6_4:-82035989 | Msa0999700:CDS |
| TTAGAGATCAAAATGAATTC+TGG | 0.294452 | 6_4:-82036557 | Msa0999700:CDS |
| AATGTAATTATAGGACATTT+TGG | 0.333210 | 6_4:-82036586 | Msa0999700:intron |
| AATGACTCTCTCAGATTTCA+TGG | 0.338997 | 6_4:-82035176 | Msa0999700:CDS |
| ATCCCACCATCCTCAGAGTT+TGG | 0.353088 | 6_4:+82035232 | None:intergenic |
| AGATTTGCTAAGCTTCTTCT+AGG | 0.357290 | 6_4:-82037874 | Msa0999700:CDS |
| ATTATACCAGTTGGTGGCTT+AGG | 0.357434 | 6_4:+82038402 | None:intergenic |
| CGATCTGCTCATGAACATTC+CGG | 0.375648 | 6_4:-82036801 | Msa0999700:CDS |
| TATTCAAGGTTTATTTGATA+AGG | 0.386545 | 6_4:-82038583 | Msa0999700:CDS |
| GTTGGAGGAACTTTAACAAC+TGG | 0.388069 | 6_4:+82036462 | None:intergenic |
| GTTGTTAAAGTTCCTCCAAC+AGG | 0.390259 | 6_4:-82036459 | Msa0999700:CDS |
| ATATTGAGAGCAACTCCTAT+TGG | 0.393413 | 6_4:+82038465 | None:intergenic |
| TATACCAGCAAGGTTTGTTA+TGG | 0.393796 | 6_4:+82037795 | None:intergenic |
| TACTGTGGAATACTTTGATC+CGG | 0.414609 | 6_4:-82036075 | Msa0999700:CDS |
| CGGCTGGATGCCGCCAACGA+TGG | 0.421001 | 6_4:+82035298 | None:intergenic |
| ATTCTCGTTGGATTCTTTGC+CGG | 0.425301 | 6_4:-82035272 | Msa0999700:CDS |
| TTCAGAAACTGATTTGATGA+AGG | 0.432350 | 6_4:-82037899 | Msa0999700:intron |
| TGGAAAATCTTCATGGAGTT+CGG | 0.432609 | 6_4:-82035946 | Msa0999700:CDS |
| GTCTTCCTTTCTTGAGACAT+TGG | 0.438853 | 6_4:+82037386 | None:intergenic |
| ATAAAGATGGAAAATCTTCA+TGG | 0.441204 | 6_4:-82035953 | Msa0999700:CDS |
| AAGCTGAGTGTTTACCTCCA+TGG | 0.443142 | 6_4:+82037271 | None:intergenic |
| TTTGATAAGGATCATGATGA+AGG | 0.446490 | 6_4:-82038570 | Msa0999700:CDS |
| TATCAGATGTAGCTGTGAAA+TGG | 0.447982 | 6_4:-82036434 | Msa0999700:CDS |
| TTCAAGAGTAATAGAAAGCT+TGG | 0.450795 | 6_4:-82035380 | Msa0999700:CDS |
| ATGATCAAACAAGAGTTTCC+AGG | 0.451515 | 6_4:-82035867 | Msa0999700:CDS |
| AATGCCATAACAAACCTTGC+TGG | 0.452672 | 6_4:-82037799 | Msa0999700:intron |
| AGTGAAGACTGTGGAAGTCC+TGG | 0.455369 | 6_4:+82035849 | None:intergenic |
| AAATGGTGTTTCTTCAGCAC+TGG | 0.456274 | 6_4:-82037830 | Msa0999700:CDS |
| AAGTTCTTGACCTCAAGAAT+AGG | 0.466447 | 6_4:-82036013 | Msa0999700:CDS |
| GACATGTCAGGTGCAGGAAA+TGG | 0.467588 | 6_4:-82037847 | Msa0999700:CDS |
| CTTCTATTGTAATATGGAAA+AGG | 0.469644 | 6_4:-82035983 | Msa0999700:CDS |
| CCATTGGAAACTCAGCCAAT+AGG | 0.473248 | 6_4:-82038480 | Msa0999700:CDS |
| TCTTGAATAGCTCTCTAGAA+TGG | 0.475283 | 6_4:+82035396 | None:intergenic |
| GGACAAAAGGAGATTTGAAA+AGG | 0.479375 | 6_4:-82035150 | Msa0999700:CDS |
| ATGCCTCCTAAGCCACCAAC+TGG | 0.479648 | 6_4:-82038408 | Msa0999700:intron |
| CGATATTAATGTCGCGCGAT+AGG | 0.480793 | 6_4:+82035004 | None:intergenic |
| GCATCAAGCTTGCGCAAGGC+CGG | 0.484296 | 6_4:+82036782 | None:intergenic |
| TACTTGAGCATTTATTGCCA+TGG | 0.488291 | 6_4:+82036368 | None:intergenic |
| GATTTCATGGGATGGACAAA+AGG | 0.489636 | 6_4:-82035163 | Msa0999700:CDS |
| AGAGATTCAATGTAGTTGTC+AGG | 0.493552 | 6_4:+82036327 | None:intergenic |
| AAACCTTGAATATGTTTCCC+AGG | 0.494123 | 6_4:+82038594 | None:intergenic |
| TTGAAAAGGACTAATTCTAC+AGG | 0.501607 | 6_4:-82035136 | Msa0999700:CDS |
| GGTGGAGAAAAGAAATTGAA+TGG | 0.504792 | 6_4:-82037361 | Msa0999700:CDS |
| ATACCAGTTGGTGGCTTAGG+AGG | 0.512969 | 6_4:+82038405 | None:intergenic |
| AAAAGGAAGATGAATAAAGA+TGG | 0.515789 | 6_4:-82035966 | Msa0999700:CDS |
| CTCGTTGGATTCTTTGCCGG+TGG | 0.515807 | 6_4:-82035269 | Msa0999700:CDS |
| AACTCTGAGGATGGTGGGAT+AGG | 0.517108 | 6_4:-82035229 | Msa0999700:CDS |
| AAGAATCCAACGAGAATCTC+CGG | 0.517591 | 6_4:+82035278 | None:intergenic |
| CATTGCATCAAGCTTGCGCA+AGG | 0.519705 | 6_4:+82036778 | None:intergenic |
| CTGAGGATGGTGGGATAGGA+AGG | 0.520302 | 6_4:-82035225 | Msa0999700:CDS |
| AATTCAGCATGCAGAAATCA+AGG | 0.528944 | 6_4:-82038647 | None:intergenic |
| GTCAAGAACTTTATGTTCTG+TGG | 0.529156 | 6_4:+82036025 | None:intergenic |
| CTCTCTCAGATTTCATGGGA+TGG | 0.531255 | 6_4:-82035171 | Msa0999700:CDS |
| CTCAAAGAAAGAGTGACAAA+TGG | 0.531945 | 6_4:-82036491 | Msa0999700:CDS |
| CCTATTGGCTGAGTTTCCAA+TGG | 0.532644 | 6_4:+82038480 | None:intergenic |
| TCCTTAGCTAACTGTTGTGA+TGG | 0.535551 | 6_4:+82037302 | None:intergenic |
| ATCCCTGGGAAACATATTCA+AGG | 0.535882 | 6_4:-82038597 | Msa0999700:CDS |
| GGAGAAGACATGTCAGGTGC+AGG | 0.536981 | 6_4:-82037853 | Msa0999700:CDS |
| GGCAATAAGCATGGAGAAGA+GGG | 0.538220 | 6_4:-82035925 | Msa0999700:CDS |
| CATCGTTGGCGGCATCCAGC+CGG | 0.540395 | 6_4:-82035297 | Msa0999700:CDS |
| ACTGTGGAATACTTTGATCC+GGG | 0.540800 | 6_4:-82036074 | Msa0999700:CDS |
| GGAGATGTTTGATCAGCCAC+CGG | 0.544079 | 6_4:+82035253 | None:intergenic |
| TGGAGCCAATGTCTCAAGAA+AGG | 0.548345 | 6_4:-82037391 | Msa0999700:CDS |
| CTTCTAGGAGAAGACATGTC+AGG | 0.550196 | 6_4:-82037859 | Msa0999700:CDS |
| CTCCAAACTCTGAGGATGGT+GGG | 0.553349 | 6_4:-82035234 | Msa0999700:CDS |
| AGTTTCCAATGGAATATCAC+TGG | 0.553463 | 6_4:+82038491 | None:intergenic |
| TGCTCAAGTACTATCCGAGA+TGG | 0.555455 | 6_4:-82036355 | Msa0999700:CDS |
| AACCTTGAATATGTTTCCCA+GGG | 0.559119 | 6_4:+82038595 | None:intergenic |
| CCAAGTACTTAAAGCAGCCA+TGG | 0.563065 | 6_4:-82036385 | Msa0999700:CDS |
| TCACAACAGTTAGCTAAGGA+TGG | 0.570145 | 6_4:-82037299 | Msa0999700:CDS |
| TCTCCAAACTCTGAGGATGG+TGG | 0.572008 | 6_4:-82035235 | Msa0999700:CDS |
| ATGACTCTCTCAGATTTCAT+GGG | 0.572048 | 6_4:-82035175 | Msa0999700:CDS |
| GCTACATCTGATAACCCTGT+TGG | 0.573819 | 6_4:+82036444 | None:intergenic |
| CGGCAATAAGCATGGAGAAG+AGG | 0.574710 | 6_4:-82035926 | Msa0999700:CDS |
| CTACATTGAATCTCTCCCTA+AGG | 0.579199 | 6_4:-82036319 | Msa0999700:intron |
| AAGCTTCAATCCTATTCTTG+AGG | 0.579814 | 6_4:+82036003 | None:intergenic |
| ATGGAGTTCGGCAATAAGCA+TGG | 0.581044 | 6_4:-82035934 | Msa0999700:CDS |
| ATCCAACGAGAATCTCCGGC+TGG | 0.581392 | 6_4:+82035282 | None:intergenic |
| ATCCAGCCGGAGATTCTCGT+TGG | 0.585511 | 6_4:-82035284 | Msa0999700:CDS |
| GACAAAGAATCCATCGTTGG+CGG | 0.587221 | 6_4:-82035308 | Msa0999700:CDS |
| ATATACCAGTGATATTCCAT+TGG | 0.587677 | 6_4:-82038496 | Msa0999700:CDS |
| TTGATAAGGATCATGATGAA+GGG | 0.588470 | 6_4:-82038569 | Msa0999700:CDS |
| AAATCTGAGAGAGTCATTGA+TGG | 0.588625 | 6_4:+82035181 | None:intergenic |
| ACATCTCCAAACTCTGAGGA+TGG | 0.591064 | 6_4:-82035238 | Msa0999700:CDS |
| GTTGTCAGGTATCTCCATCT+CGG | 0.591503 | 6_4:+82036341 | None:intergenic |
| ATTGTTGAGAGGAATTGTCC+CGG | 0.601613 | 6_4:+82036056 | None:intergenic |
| TCCATCACAACAGTTAGCTA+AGG | 0.603193 | 6_4:-82037303 | Msa0999700:CDS |
| ACATCTGATAACCCTGTTGG+AGG | 0.604210 | 6_4:+82036447 | None:intergenic |
| TTGTTAAAGTTCCTCCAACA+GGG | 0.606551 | 6_4:-82036458 | Msa0999700:CDS |
| CAGCAAAATCCAATATAACA+AGG | 0.607276 | 6_4:-82035820 | Msa0999700:intron |
| AAAAGTGATGAGGAAGCTGA+AGG | 0.607695 | 6_4:-82036525 | Msa0999700:CDS |
| TGTCTCAAGAAAGGAAGACT+AGG | 0.613102 | 6_4:-82037382 | Msa0999700:CDS |
| TTGGAGGAACTTTAACAACT+GGG | 0.617010 | 6_4:+82036463 | None:intergenic |
| CTCAAGAAAGGAAGACTAGG+TGG | 0.617206 | 6_4:-82037379 | Msa0999700:CDS |
| AATGACAAAGAATCCATCGT+TGG | 0.619614 | 6_4:-82035311 | Msa0999700:CDS |
| AAAGAAAGAGTGACAAATGG+TGG | 0.626399 | 6_4:-82036488 | Msa0999700:CDS |
| CCAAAATGATCACAGGATGT+GGG | 0.631669 | 6_4:-82035424 | Msa0999700:intron |
| GGGACAATTCCTCTCAACAA+TGG | 0.632556 | 6_4:-82036054 | Msa0999700:CDS |
| CAGAATGGTAGAGAAAGCCT+TGG | 0.634845 | 6_4:-82036119 | Msa0999700:CDS |
| GATCTATAAGTGCATTACTG+TGG | 0.648265 | 6_4:-82036090 | Msa0999700:CDS |
| AGCTAAGGATGGATCAACCA+TGG | 0.652900 | 6_4:-82037288 | Msa0999700:CDS |
| ATTTGTAGATCATGACGACT+CGG | 0.653527 | 6_4:-82036832 | Msa0999700:intron |
| ACTTATAGATCGACTCACCA+AGG | 0.679802 | 6_4:+82036102 | None:intergenic |
| TGGTCATGTCCATTGTTGAG+AGG | 0.679809 | 6_4:+82036045 | None:intergenic |
| TCAAACATCTCCAAACTCTG+AGG | 0.682927 | 6_4:-82035242 | Msa0999700:CDS |
| TCTGAGAGAGTCATTGATGG+TGG | 0.705269 | 6_4:+82035184 | None:intergenic |
| CTGATATCAAGTGAAGACTG+TGG | 0.722584 | 6_4:+82035840 | None:intergenic |
| TAAGGATGGATCAACCATGG+AGG | 0.766138 | 6_4:-82037285 | Msa0999700:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTATCAATTTAAAAAA+AGG | - | chr6_4:82035563-82035582 | Msa0999700:intron | 10.0% |
| !! | AAAAATAAAAACTATAACAA+AGG | - | chr6_4:82035644-82035663 | Msa0999700:intron | 10.0% |
| !! | TATTTAATTAATGTATATCA+TGG | - | chr6_4:82036403-82036422 | Msa0999700:CDS | 10.0% |
| !!! | AAAAATCACAATTTATTTTG+TGG | - | chr6_4:82035439-82035458 | Msa0999700:intron | 15.0% |
| !! | ATTTAAAAAAAGGTAATAAG+TGG | - | chr6_4:82035573-82035592 | Msa0999700:intron | 15.0% |
| !!! | TTTTTAAATGAAAACAACAT+TGG | - | chr6_4:82036175-82036194 | Msa0999700:intron | 15.0% |
| !! | TCTAATAGTAATTAAGAAAA+AGG | + | chr6_4:82037019-82037038 | None:intergenic | 15.0% |
| !! | TCTTAATTACTATTAGAATT+TGG | - | chr6_4:82037022-82037041 | Msa0999700:intron | 15.0% |
| !! | TTTAAATAATATCGTCTAAA+GGG | + | chr6_4:82038019-82038038 | None:intergenic | 15.0% |
| !! | TATTCAAGGTTTATTTGATA+AGG | - | chr6_4:82035062-82035081 | Msa0999700:CDS | 20.0% |
| !! | GCATAATAACTTAAAATGTA+GGG | + | chr6_4:82035275-82035294 | None:intergenic | 20.0% |
| !! | TGCATAATAACTTAAAATGT+AGG | + | chr6_4:82035276-82035295 | None:intergenic | 20.0% |
| !!! | TTGTATATATTTTCCAAAAG+TGG | - | chr6_4:82035917-82035936 | Msa0999700:CDS | 20.0% |
| !!! | TTTTTGATGATATTCGAATT+TGG | + | chr6_4:82036634-82036653 | None:intergenic | 20.0% |
| !!! | AATTAAGAAAAAGGTATGTT+TGG | + | chr6_4:82037010-82037029 | None:intergenic | 20.0% |
| !!! | AATGTAATTATAGGACATTT+TGG | - | chr6_4:82037059-82037078 | Msa0999700:intron | 20.0% |
| !! | TGAGTTTAATGTAAAGTTAT+TGG | + | chr6_4:82037918-82037937 | None:intergenic | 20.0% |
| !! | TTTACATTAAACTCAAAACA+CGG | - | chr6_4:82037923-82037942 | Msa0999700:intron | 20.0% |
| !! | GTTTAAATAATATCGTCTAA+AGG | + | chr6_4:82038020-82038039 | None:intergenic | 20.0% |
| !! | AAAAAAAGAACAAACAAGAT+TGG | + | chr6_4:82038138-82038157 | None:intergenic | 20.0% |
| !!! | TCCAAGTAATAATTTTTCTT+CGG | + | chr6_4:82038590-82038609 | None:intergenic | 20.0% |
| !! | CTTAGTTCATGACTTTTAAA+TGG | + | chr6_4:82035322-82035341 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGTGGTGTTAGT+CGG | - | chr6_4:82035449-82035468 | Msa0999700:intron | 25.0% |
| !!! | TTTTTTTTGTCTCTACATGA+AGG | - | chr6_4:82035674-82035693 | Msa0999700:intron | 25.0% |
| !! | TTAGAATATGTTTCCACTTT+TGG | + | chr6_4:82035933-82035952 | None:intergenic | 25.0% |
| ! | CAAAAATGTAGTTACTTACA+AGG | + | chr6_4:82036895-82036914 | None:intergenic | 25.0% |
| ! | ACTTATTTGAACTTATCTAC+TGG | + | chr6_4:82036983-82037002 | None:intergenic | 25.0% |
| ! | TAGAATTTGGACTAACTTTA+TGG | - | chr6_4:82037035-82037054 | Msa0999700:intron | 25.0% |
| ! | CTTTATGGCAATGTAATTAT+AGG | - | chr6_4:82037050-82037069 | Msa0999700:intron | 25.0% |
| ! | TTAGAGATCAAAATGAATTC+TGG | - | chr6_4:82037088-82037107 | Msa0999700:intron | 25.0% |
| ! | TCCCTAAGGTAATATAATTA+AGG | - | chr6_4:82037340-82037359 | Msa0999700:CDS | 25.0% |
| ! | CCCTTAATTATATTACCTTA+GGG | + | chr6_4:82037344-82037363 | None:intergenic | 25.0% |
| ! | CCCTAAGGTAATATAATTAA+GGG | - | chr6_4:82037341-82037360 | Msa0999700:CDS | 25.0% |
| ! | ACCCTTAATTATATTACCTT+AGG | + | chr6_4:82037345-82037364 | None:intergenic | 25.0% |
| ! | AAGGTAATATAATTAAGGGT+CGG | - | chr6_4:82037345-82037364 | Msa0999700:CDS | 25.0% |
| !! | TTTTTATAAGCTCTCTCAAA+CGG | + | chr6_4:82037420-82037439 | None:intergenic | 25.0% |
| ! | TTGAAGCTTCTATTGTAATA+TGG | - | chr6_4:82037656-82037675 | Msa0999700:intron | 25.0% |
| ! | CTTCTATTGTAATATGGAAA+AGG | - | chr6_4:82037662-82037681 | Msa0999700:intron | 25.0% |
| ! | AAAAGGAAGATGAATAAAGA+TGG | - | chr6_4:82037679-82037698 | Msa0999700:intron | 25.0% |
| ! | ATAAAGATGGAAAATCTTCA+TGG | - | chr6_4:82037692-82037711 | Msa0999700:intron | 25.0% |
| !! | TTGTTATCACCTTGTTATAT+TGG | + | chr6_4:82037837-82037856 | None:intergenic | 25.0% |
| !! | AATGTAAAGTTATTGGTGTT+TGG | + | chr6_4:82037911-82037930 | None:intergenic | 25.0% |
| ! | TAATAGATTGTTTATCGTTG+AGG | - | chr6_4:82037948-82037967 | Msa0999700:intron | 25.0% |
| !! | ATCTATTTTCTTGTGAATCA+AGG | - | chr6_4:82038160-82038179 | Msa0999700:intron | 25.0% |
| !!! | GATTGATGATGTTTTATATG+TGG | - | chr6_4:82038307-82038326 | Msa0999700:intron | 25.0% |
| !!! | GAAAAAGTTTTGAATAAGCT+TGG | - | chr6_4:82038560-82038579 | Msa0999700:CDS | 25.0% |
| ! | ACCGAAGAAAAATTATTACT+TGG | - | chr6_4:82038586-82038605 | Msa0999700:CDS | 25.0% |
| TTTGATAAGGATCATGATGA+AGG | - | chr6_4:82035075-82035094 | Msa0999700:CDS | 30.0% | |
| TTGATAAGGATCATGATGAA+GGG | - | chr6_4:82035076-82035095 | Msa0999700:CDS | 30.0% | |
| ATATACCAGTGATATTCCAT+TGG | - | chr6_4:82035149-82035168 | Msa0999700:CDS | 30.0% | |
| AGAAAAATTATACCAGTTGG+TGG | + | chr6_4:82035252-82035271 | None:intergenic | 30.0% | |
| AAAGTCATGAACTAAGATCA+TGG | - | chr6_4:82035326-82035345 | Msa0999700:CDS | 30.0% | |
| AAGTCATGAACTAAGATCAT+GGG | - | chr6_4:82035327-82035346 | Msa0999700:CDS | 30.0% | |
| !! | TTCAGAAACTGATTTGATGA+AGG | - | chr6_4:82035746-82035765 | Msa0999700:intron | 30.0% |
| ! | CAAAAAAGTATATACCAGCA+AGG | + | chr6_4:82035863-82035882 | None:intergenic | 30.0% |
| ! | TTTTTGCCCTCAAATCTTTA+TGG | - | chr6_4:82035877-82035896 | Msa0999700:CDS | 30.0% |
| TTCCTACCATAAAGATTTGA+GGG | + | chr6_4:82035886-82035905 | None:intergenic | 30.0% | |
| TTTCCTACCATAAAGATTTG+AGG | + | chr6_4:82035887-82035906 | None:intergenic | 30.0% | |
| CTTTATGGTAGGAAATGAAA+TGG | - | chr6_4:82035892-82035911 | Msa0999700:CDS | 30.0% | |
| AACTTTAATCGTAACTTCGT+AGG | - | chr6_4:82036055-82036074 | Msa0999700:CDS | 30.0% | |
| !! | TTTTGGAGAACAATCAAAGT+TGG | - | chr6_4:82036234-82036253 | Msa0999700:intron | 30.0% |
| GTATCCTAATTGCATATATG+CGG | - | chr6_4:82036586-82036605 | Msa0999700:intron | 30.0% | |
| ! | ATCTAGAAATTTGAAGTCGT+GGG | + | chr6_4:82036750-82036769 | None:intergenic | 30.0% |
| ! | TTAAGTTGCATATCCAAACA+GGG | + | chr6_4:82036918-82036937 | None:intergenic | 30.0% |
| CTTTCATATCTTTGTCAGAA+TGG | - | chr6_4:82037511-82037530 | Msa0999700:intron | 30.0% | |
| CAGCAAAATCCAATATAACA+AGG | - | chr6_4:82037825-82037844 | Msa0999700:CDS | 30.0% | |
| CACTGTTGTTACTCTATATT+CGG | - | chr6_4:82038082-82038101 | Msa0999700:intron | 30.0% | |
| TTCAAGAGTAATAGAAAGCT+TGG | - | chr6_4:82038265-82038284 | Msa0999700:intron | 30.0% | |
| !! | TGGCTTATACAGTTTTATCA+AGG | - | chr6_4:82038285-82038304 | Msa0999700:intron | 30.0% |
| TTGAAAAGGACTAATTCTAC+AGG | - | chr6_4:82038509-82038528 | Msa0999700:CDS | 30.0% | |
| ! | AGAAAAATGTTTGAGATCCC+TGG | - | chr6_4:82035033-82035052 | Msa0999700:CDS | 35.0% |
| ! | GAAAAATGTTTGAGATCCCT+GGG | - | chr6_4:82035034-82035053 | Msa0999700:CDS | 35.0% |
| AACCTTGAATATGTTTCCCA+GGG | + | chr6_4:82035053-82035072 | None:intergenic | 35.0% | |
| AAACCTTGAATATGTTTCCC+AGG | + | chr6_4:82035054-82035073 | None:intergenic | 35.0% | |
| AGTTTCCAATGGAATATCAC+TGG | + | chr6_4:82035157-82035176 | None:intergenic | 35.0% | |
| ATATTGAGAGCAACTCCTAT+TGG | + | chr6_4:82035183-82035202 | None:intergenic | 35.0% | |
| GGGAGAAAAATTATACCAGT+TGG | + | chr6_4:82035255-82035274 | None:intergenic | 35.0% | |
| !! | AGATTTGCTAAGCTTCTTCT+AGG | - | chr6_4:82035771-82035790 | Msa0999700:intron | 35.0% |
| !! | TATACCAGCAAGGTTTGTTA+TGG | + | chr6_4:82035853-82035872 | None:intergenic | 35.0% |
| !! | CATGACATGTGGTTTGTTAT+AGG | - | chr6_4:82035969-82035988 | Msa0999700:CDS | 35.0% |
| ! | TTCCATGTAGCATCTGTTTT+TGG | - | chr6_4:82036217-82036236 | Msa0999700:intron | 35.0% |
| GGTGGAGAAAAGAAATTGAA+TGG | - | chr6_4:82036284-82036303 | Msa0999700:intron | 35.0% | |
| ATTCTGCTTCCATACGATTA+GGG | - | chr6_4:82036426-82036445 | Msa0999700:CDS | 35.0% | |
| ATTCTCCACATTCAGACAAT+TGG | - | chr6_4:82036449-82036468 | Msa0999700:CDS | 35.0% | |
| TTCTCCACATTCAGACAATT+GGG | - | chr6_4:82036450-82036469 | Msa0999700:CDS | 35.0% | |
| CAGTAGTTGTTTGATCAAGA+GGG | + | chr6_4:82036566-82036585 | None:intergenic | 35.0% | |
| TTCTCCGCATATATGCAATT+AGG | + | chr6_4:82036593-82036612 | None:intergenic | 35.0% | |
| ! | GATCTAGAAATTTGAAGTCG+TGG | + | chr6_4:82036751-82036770 | None:intergenic | 35.0% |
| GTCACAGATATATCTAGTGA+TGG | + | chr6_4:82036773-82036792 | None:intergenic | 35.0% | |
| ATTTGTAGATCATGACGACT+CGG | - | chr6_4:82036813-82036832 | Msa0999700:CDS | 35.0% | |
| ! | AACTACATTTTTGCCCTGTT+TGG | - | chr6_4:82036902-82036921 | Msa0999700:intron | 35.0% |
| ! | GTTAAGTTGCATATCCAAAC+AGG | + | chr6_4:82036919-82036938 | None:intergenic | 35.0% |
| GCAACTTAACTATACGCTTA+TGG | - | chr6_4:82036929-82036948 | Msa0999700:intron | 35.0% | |
| GTATGTCTCAAAAAGTGATG+AGG | - | chr6_4:82037110-82037129 | Msa0999700:intron | 35.0% | |
| CTCAAAGAAAGAGTGACAAA+TGG | - | chr6_4:82037154-82037173 | Msa0999700:intron | 35.0% | |
| AAAGAAAGAGTGACAAATGG+TGG | - | chr6_4:82037157-82037176 | Msa0999700:intron | 35.0% | |
| TTGGAGGAACTTTAACAACT+GGG | + | chr6_4:82037185-82037204 | None:intergenic | 35.0% | |
| TTGTTAAAGTTCCTCCAACA+GGG | - | chr6_4:82037187-82037206 | Msa0999700:intron | 35.0% | |
| TATCAGATGTAGCTGTGAAA+TGG | - | chr6_4:82037211-82037230 | Msa0999700:intron | 35.0% | |
| CTTGGTTAACATTGTCTTTC+TGG | + | chr6_4:82037245-82037264 | None:intergenic | 35.0% | |
| TACTTGAGCATTTATTGCCA+TGG | + | chr6_4:82037280-82037299 | None:intergenic | 35.0% | |
| AGAGATTCAATGTAGTTGTC+AGG | + | chr6_4:82037321-82037340 | None:intergenic | 35.0% | |
| AAAAACGCTTAATGATTCCG+CGG | - | chr6_4:82037438-82037457 | Msa0999700:intron | 35.0% | |
| ATTATCTCTATACCATACCG+CGG | + | chr6_4:82037458-82037477 | None:intergenic | 35.0% | |
| GATCTATAAGTGCATTACTG+TGG | - | chr6_4:82037555-82037574 | Msa0999700:intron | 35.0% | |
| TACTGTGGAATACTTTGATC+CGG | - | chr6_4:82037570-82037589 | Msa0999700:intron | 35.0% | |
| GTCAAGAACTTTATGTTCTG+TGG | + | chr6_4:82037623-82037642 | None:intergenic | 35.0% | |
| AAGTTCTTGACCTCAAGAAT+AGG | - | chr6_4:82037632-82037651 | Msa0999700:intron | 35.0% | |
| AAGCTTCAATCCTATTCTTG+AGG | + | chr6_4:82037645-82037664 | None:intergenic | 35.0% | |
| TGGAAAATCTTCATGGAGTT+CGG | - | chr6_4:82037699-82037718 | Msa0999700:intron | 35.0% | |
| ATGATCAAACAAGAGTTTCC+AGG | - | chr6_4:82037778-82037797 | Msa0999700:intron | 35.0% | |
| GATTGTTTATCGTTGAGGTA+TGG | - | chr6_4:82037953-82037972 | Msa0999700:intron | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | - | chr6_4:82037975-82037994 | Msa0999700:intron | 35.0% | |
| ! | TCTTGAATAGCTCTCTAGAA+TGG | + | chr6_4:82038252-82038271 | None:intergenic | 35.0% |
| AATGACAAAGAATCCATCGT+TGG | - | chr6_4:82038334-82038353 | Msa0999700:intron | 35.0% | |
| AAATCTGAGAGAGTCATTGA+TGG | + | chr6_4:82038467-82038486 | None:intergenic | 35.0% | |
| AATGACTCTCTCAGATTTCA+TGG | - | chr6_4:82038469-82038488 | Msa0999700:CDS | 35.0% | |
| ATGACTCTCTCAGATTTCAT+GGG | - | chr6_4:82038470-82038489 | Msa0999700:CDS | 35.0% | |
| GGACAAAAGGAGATTTGAAA+AGG | - | chr6_4:82038495-82038514 | Msa0999700:CDS | 35.0% | |
| ATCCCTGGGAAACATATTCA+AGG | - | chr6_4:82035048-82035067 | Msa0999700:CDS | 40.0% | |
| !! | ATTATACCAGTTGGTGGCTT+AGG | + | chr6_4:82035246-82035265 | None:intergenic | 40.0% |
| AAATGGTGTTTCTTCAGCAC+TGG | - | chr6_4:82035815-82035834 | Msa0999700:intron | 40.0% | |
| AATGCCATAACAAACCTTGC+TGG | - | chr6_4:82035846-82035865 | Msa0999700:CDS | 40.0% | |
| TGCCCTCAAATCTTTATGGT+AGG | - | chr6_4:82035881-82035900 | Msa0999700:CDS | 40.0% | |
| CTCCAAAAACAGATGCTACA+TGG | + | chr6_4:82036222-82036241 | None:intergenic | 40.0% | |
| GTCTTCCTTTCTTGAGACAT+TGG | + | chr6_4:82036262-82036281 | None:intergenic | 40.0% | |
| TGTCTCAAGAAAGGAAGACT+AGG | - | chr6_4:82036263-82036282 | Msa0999700:intron | 40.0% | |
| TCCATCACAACAGTTAGCTA+AGG | - | chr6_4:82036342-82036361 | Msa0999700:CDS | 40.0% | |
| TCCTTAGCTAACTGTTGTGA+TGG | + | chr6_4:82036346-82036365 | None:intergenic | 40.0% | |
| TCACAACAGTTAGCTAAGGA+TGG | - | chr6_4:82036346-82036365 | Msa0999700:CDS | 40.0% | |
| GATTCTGCTTCCATACGATT+AGG | - | chr6_4:82036425-82036444 | Msa0999700:CDS | 40.0% | |
| TTGTCCCAATTGTCTGAATG+TGG | + | chr6_4:82036457-82036476 | None:intergenic | 40.0% | |
| TTCAGACAATTGGGACAATG+TGG | - | chr6_4:82036459-82036478 | Msa0999700:CDS | 40.0% | |
| CCAGTAGTTGTTTGATCAAG+AGG | + | chr6_4:82036567-82036586 | None:intergenic | 40.0% | |
| CCTCTTGATCAAACAACTAC+TGG | - | chr6_4:82036564-82036583 | Msa0999700:CDS | 40.0% | |
| AAAAGTGATGAGGAAGCTGA+AGG | - | chr6_4:82037120-82037139 | Msa0999700:intron | 40.0% | |
| GTTGGAGGAACTTTAACAAC+TGG | + | chr6_4:82037186-82037205 | None:intergenic | 40.0% | |
| GTTGTTAAAGTTCCTCCAAC+AGG | - | chr6_4:82037186-82037205 | Msa0999700:intron | 40.0% | |
| CTACATTGAATCTCTCCCTA+AGG | - | chr6_4:82037326-82037345 | Msa0999700:CDS | 40.0% | |
| ! | ACTTATAGATCGACTCACCA+AGG | + | chr6_4:82037546-82037565 | None:intergenic | 40.0% |
| ACTGTGGAATACTTTGATCC+GGG | - | chr6_4:82037571-82037590 | Msa0999700:intron | 40.0% | |
| ATTGTTGAGAGGAATTGTCC+CGG | + | chr6_4:82037592-82037611 | None:intergenic | 40.0% | |
| CTGATATCAAGTGAAGACTG+TGG | + | chr6_4:82037808-82037827 | None:intergenic | 40.0% | |
| GTTACTCTATATTCGGAGAC+TGG | - | chr6_4:82038089-82038108 | Msa0999700:intron | 40.0% | |
| CAAGATTGGATCACGAAGTT+TGG | + | chr6_4:82038124-82038143 | None:intergenic | 40.0% | |
| ACTGCTTCCAAAATGATCAC+AGG | - | chr6_4:82038214-82038233 | Msa0999700:intron | 40.0% | |
| TCCAAAATGATCACAGGATG+TGG | - | chr6_4:82038220-82038239 | Msa0999700:intron | 40.0% | |
| CCAAAATGATCACAGGATGT+GGG | - | chr6_4:82038221-82038240 | Msa0999700:intron | 40.0% | |
| AAGAATCCAACGAGAATCTC+CGG | + | chr6_4:82038370-82038389 | None:intergenic | 40.0% | |
| ATTCTCGTTGGATTCTTTGC+CGG | - | chr6_4:82038373-82038392 | Msa0999700:intron | 40.0% | |
| TCAAACATCTCCAAACTCTG+AGG | - | chr6_4:82038403-82038422 | Msa0999700:intron | 40.0% | |
| GATTTCATGGGATGGACAAA+AGG | - | chr6_4:82038482-82038501 | Msa0999700:CDS | 40.0% | |
| ! | CCTATTGGCTGAGTTTCCAA+TGG | + | chr6_4:82035168-82035187 | None:intergenic | 45.0% |
| CCATTGGAAACTCAGCCAAT+AGG | - | chr6_4:82035165-82035184 | Msa0999700:CDS | 45.0% | |
| ! | CTTCTAGGAGAAGACATGTC+AGG | - | chr6_4:82035786-82035805 | Msa0999700:intron | 45.0% |
| GTGTCACATGACATGACATG+TGG | - | chr6_4:82035958-82035977 | Msa0999700:CDS | 45.0% | |
| TGGAGCCAATGTCTCAAGAA+AGG | - | chr6_4:82036254-82036273 | Msa0999700:intron | 45.0% | |
| CTCAAGAAAGGAAGACTAGG+TGG | - | chr6_4:82036266-82036285 | Msa0999700:intron | 45.0% | |
| AGCTAAGGATGGATCAACCA+TGG | - | chr6_4:82036357-82036376 | Msa0999700:CDS | 45.0% | |
| TAAGGATGGATCAACCATGG+AGG | - | chr6_4:82036360-82036379 | Msa0999700:CDS | 45.0% | |
| AAGCTGAGTGTTTACCTCCA+TGG | + | chr6_4:82036377-82036396 | None:intergenic | 45.0% | |
| GTGGAGAATCCCTAATCGTA+TGG | + | chr6_4:82036438-82036457 | None:intergenic | 45.0% | |
| TGTGGCCGTTTGATCATGAT+CGG | - | chr6_4:82036477-82036496 | Msa0999700:CDS | 45.0% | |
| ACCGTCCGATCATGATCAAA+CGG | + | chr6_4:82036485-82036504 | None:intergenic | 45.0% | |
| CGATCTGCTCATGAACATTC+CGG | - | chr6_4:82036844-82036863 | Msa0999700:intron | 45.0% | |
| ACATCTGATAACCCTGTTGG+AGG | + | chr6_4:82037201-82037220 | None:intergenic | 45.0% | |
| GCTACATCTGATAACCCTGT+TGG | + | chr6_4:82037204-82037223 | None:intergenic | 45.0% | |
| ! | CCATGGCTGCTTTAAGTACT+TGG | + | chr6_4:82037263-82037282 | None:intergenic | 45.0% |
| CCAAGTACTTAAAGCAGCCA+TGG | - | chr6_4:82037260-82037279 | Msa0999700:intron | 45.0% | |
| TGCTCAAGTACTATCCGAGA+TGG | - | chr6_4:82037290-82037309 | Msa0999700:CDS | 45.0% | |
| GTTGTCAGGTATCTCCATCT+CGG | + | chr6_4:82037307-82037326 | None:intergenic | 45.0% | |
| CAGAATGGTAGAGAAAGCCT+TGG | - | chr6_4:82037526-82037545 | Msa0999700:intron | 45.0% | |
| GGGACAATTCCTCTCAACAA+TGG | - | chr6_4:82037591-82037610 | Msa0999700:intron | 45.0% | |
| TGGTCATGTCCATTGTTGAG+AGG | + | chr6_4:82037603-82037622 | None:intergenic | 45.0% | |
| ATGGAGTTCGGCAATAAGCA+TGG | - | chr6_4:82037711-82037730 | Msa0999700:intron | 45.0% | |
| GGCAATAAGCATGGAGAAGA+GGG | - | chr6_4:82037720-82037739 | Msa0999700:intron | 45.0% | |
| ! | CCCACATCCTGTGATCATTT+TGG | + | chr6_4:82038224-82038243 | None:intergenic | 45.0% |
| GACAAAGAATCCATCGTTGG+CGG | - | chr6_4:82038337-82038356 | Msa0999700:intron | 45.0% | |
| ! | ACATCTCCAAACTCTGAGGA+TGG | - | chr6_4:82038407-82038426 | Msa0999700:intron | 45.0% |
| TCTGAGAGAGTCATTGATGG+TGG | + | chr6_4:82038464-82038483 | None:intergenic | 45.0% | |
| CTCTCTCAGATTTCATGGGA+TGG | - | chr6_4:82038474-82038493 | Msa0999700:CDS | 45.0% | |
| !!! | TGAATTTTTTTTTTAATTAA+TGG | - | chr6_4:82035717-82035736 | Msa0999700:intron | 5.0% |
| !! | ATACCAGTTGGTGGCTTAGG+AGG | + | chr6_4:82035243-82035262 | None:intergenic | 50.0% |
| GACATGTCAGGTGCAGGAAA+TGG | - | chr6_4:82035798-82035817 | Msa0999700:intron | 50.0% | |
| GCCGTTTGATCATGATCGGA+CGG | - | chr6_4:82036481-82036500 | Msa0999700:CDS | 50.0% | |
| ATTTGGACTCCACGCAGTCA+AGG | + | chr6_4:82036617-82036636 | None:intergenic | 50.0% | |
| CATTGCATCAAGCTTGCGCA+AGG | + | chr6_4:82036870-82036889 | None:intergenic | 50.0% | |
| CGCTTAATGATTCCGCGGTA+TGG | - | chr6_4:82037443-82037462 | Msa0999700:intron | 50.0% | |
| CGGCAATAAGCATGGAGAAG+AGG | - | chr6_4:82037719-82037738 | Msa0999700:intron | 50.0% | |
| AGTGAAGACTGTGGAAGTCC+TGG | + | chr6_4:82037799-82037818 | None:intergenic | 50.0% | |
| GGAGATGTTTGATCAGCCAC+CGG | + | chr6_4:82038395-82038414 | None:intergenic | 50.0% | |
| ! | TCTCCAAACTCTGAGGATGG+TGG | - | chr6_4:82038410-82038429 | Msa0999700:CDS | 50.0% |
| ! | CTCCAAACTCTGAGGATGGT+GGG | - | chr6_4:82038411-82038430 | Msa0999700:CDS | 50.0% |
| ATCCCACCATCCTCAGAGTT+TGG | + | chr6_4:82038416-82038435 | None:intergenic | 50.0% | |
| !! | AACTCTGAGGATGGTGGGAT+AGG | - | chr6_4:82038416-82038435 | Msa0999700:CDS | 50.0% |
| ATGCCTCCTAAGCCACCAAC+TGG | - | chr6_4:82035237-82035256 | Msa0999700:CDS | 55.0% | |
| GGAGAAGACATGTCAGGTGC+AGG | - | chr6_4:82035792-82035811 | Msa0999700:intron | 55.0% | |
| AAAGGGCAGTCGAGAGTGAC+TGG | + | chr6_4:82038002-82038021 | None:intergenic | 55.0% | |
| ATCCAGCCGGAGATTCTCGT+TGG | - | chr6_4:82038361-82038380 | Msa0999700:intron | 55.0% | |
| ATCCAACGAGAATCTCCGGC+TGG | + | chr6_4:82038366-82038385 | None:intergenic | 55.0% | |
| CTCGTTGGATTCTTTGCCGG+TGG | - | chr6_4:82038376-82038395 | Msa0999700:intron | 55.0% | |
| !! | CTGAGGATGGTGGGATAGGA+AGG | - | chr6_4:82038420-82038439 | Msa0999700:CDS | 55.0% |
| GCGGAGAATCCTTGACTGCG+TGG | - | chr6_4:82036605-82036624 | Msa0999700:intron | 60.0% | |
| GCATCAAGCTTGCGCAAGGC+CGG | + | chr6_4:82036866-82036885 | None:intergenic | 60.0% | |
| CATCGTTGGCGGCATCCAGC+CGG | - | chr6_4:82038348-82038367 | Msa0999700:intron | 65.0% | |
| CGGCTGGATGCCGCCAACGA+TGG | + | chr6_4:82038350-82038369 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82035009 | 82038658 | 82035009 | ID=Msa0999700;Name=Msa0999700 |
| chr6_4 | mRNA | 82035009 | 82038658 | 82035009 | ID=Msa0999700-mRNA-1;Parent=Msa0999700;Name=Msa0999700-mRNA-1;_AED=0.04;_eAED=0.04;_QI=30|1|0.71|1|1|1|7|0|527 |
| chr6_4 | exon | 82035009 | 82035431 | 82035009 | ID=Msa0999700-mRNA-1:exon:15716;Parent=Msa0999700-mRNA-1 |
| chr6_4 | exon | 82035821 | 82036138 | 82035821 | ID=Msa0999700-mRNA-1:exon:15715;Parent=Msa0999700-mRNA-1 |
| chr6_4 | exon | 82036320 | 82036595 | 82036320 | ID=Msa0999700-mRNA-1:exon:15714;Parent=Msa0999700-mRNA-1 |
| chr6_4 | exon | 82036772 | 82036846 | 82036772 | ID=Msa0999700-mRNA-1:exon:15713;Parent=Msa0999700-mRNA-1 |
| chr6_4 | exon | 82037286 | 82037440 | 82037286 | ID=Msa0999700-mRNA-1:exon:15712;Parent=Msa0999700-mRNA-1 |
| chr6_4 | exon | 82037800 | 82037916 | 82037800 | ID=Msa0999700-mRNA-1:exon:15711;Parent=Msa0999700-mRNA-1 |
| chr6_4 | exon | 82038409 | 82038658 | 82038409 | ID=Msa0999700-mRNA-1:exon:15710;Parent=Msa0999700-mRNA-1 |
| chr6_4 | five_prime_UTR | 82038629 | 82038658 | 82038629 | ID=Msa0999700-mRNA-1:five_prime_utr;Parent=Msa0999700-mRNA-1 |
| chr6_4 | CDS | 82038409 | 82038628 | 82038409 | ID=Msa0999700-mRNA-1:cds;Parent=Msa0999700-mRNA-1 |
| chr6_4 | CDS | 82037800 | 82037916 | 82037800 | ID=Msa0999700-mRNA-1:cds;Parent=Msa0999700-mRNA-1 |
| chr6_4 | CDS | 82037286 | 82037440 | 82037286 | ID=Msa0999700-mRNA-1:cds;Parent=Msa0999700-mRNA-1 |
| chr6_4 | CDS | 82036772 | 82036846 | 82036772 | ID=Msa0999700-mRNA-1:cds;Parent=Msa0999700-mRNA-1 |
| chr6_4 | CDS | 82036320 | 82036595 | 82036320 | ID=Msa0999700-mRNA-1:cds;Parent=Msa0999700-mRNA-1 |
| chr6_4 | CDS | 82035821 | 82036138 | 82035821 | ID=Msa0999700-mRNA-1:cds;Parent=Msa0999700-mRNA-1 |
| chr6_4 | CDS | 82035009 | 82035431 | 82035009 | ID=Msa0999700-mRNA-1:cds;Parent=Msa0999700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
