AlfalfaGEDB | Msa1389120

M. sativa cultivar zhongmu-4 / Msa1389120

KEGG: K03955
GO: GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509
PFAM: PF00550.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389120	PNY14930.1	95.161	124	6	0	1	124	1	124	1.61e-79	239

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389120	sp\|Q9FGJ4\|ACPM3_ARATH	56.693	127	51	1	1	123	1	127	1.07e-41	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389120	A0A2K3PI09	95.161	124	6	0	1	124	1	124	7.68e-80	239

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008330	Msa1389120	0.806066	9.850275e-50	-8.615850e-47
Msa0036150	Msa1389120	0.831182	1.929367e-55	-8.615850e-47
Msa0040190	Msa1389120	0.819361	1.209096e-52	-8.615850e-47
Msa0075850	Msa1389120	0.805647	1.206820e-49	-8.615850e-47
Msa0134550	Msa1389120	0.818630	1.773446e-52	-8.615850e-47
Msa0141110	Msa1389120	-0.800183	1.624088e-48	-8.615850e-47
Msa0164660	Msa1389120	0.801475	8.850169e-49	-8.615850e-47
Msa0168390	Msa1389120	0.809496	1.838286e-50	-8.615850e-47
Msa0189050	Msa1389120	0.823986	1.030791e-53	-8.615850e-47
Msa0211010	Msa1389120	0.801616	8.276882e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389120	MtrunA17_Chr4g0076301	94.355	124	7	1	124	1	124	6.58e-83	238
Msa1389120	MtrunA17_Chr7g0249561	50.649	77	38	47	123	54	130	2.02e-21	82.8
Msa1389120	MtrunA17_Chr7g0249801	48.649	74	38	47	120	43	116	2.03e-21	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389120	AT5G47630.1	56.693	127	51	1	1	123	1	127	1.09e-42	137
Msa1389120	AT5G47630.2	56.693	127	51	1	1	123	1	127	1.09e-42	137
Msa1389120	AT5G47630.3	56.693	127	51	1	1	123	1	127	1.09e-42	137
Msa1389120	AT1G65290.1	50.649	77	38	0	47	123	50	126	3.52e-21	82.4
Msa1389120	AT2G44620.1	41.000	100	46	1	17	116	29	115	6.34e-21	81.6

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Find 34 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGACAGCTTGGATA+GGG	0.522123	tig0021212:+85936	Msa1389120:CDS
ACCAACAAAACTTCTCTTTA+TGG	0.154842	tig0021212:-86130	Msa1389130:three_prime_UTR
ACTAGACCGAGTAATCAGAC+TGG	0.680991	tig0021212:+85727	Msa1389120:CDS
AGATGTTGGTGCTCTTCAGC+AGG	0.487417	tig0021212:+85686	Msa1389120:CDS
AGCTTATCTGCTTTCTCATC+AGG	0.361227	tig0021212:-86003	Msa1389130:three_prime_UTR
AGTAAAAGTGAAAATAATAT+TGG	0.326289	tig0021212:-85494	None:intergenic
ATATGCCGACAAAATTTGAT+TGG	0.384777	tig0021212:-84587	None:intergenic
ATCAGGTGTCATGCTTACAT+TGG	0.439491	tig0021212:-86242	Msa1389130:three_prime_UTR
ATCCAAGTGCTAATTCAAAG+TGG	0.625412	tig0021212:-85544	None:intergenic
CAACCCTATCCAAGCTGTCC+AGG	0.498453	tig0021212:-85939	Msa1389130:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATGCCGACAAAATTTGAT+TGG	-	tig0021212:84590-84609	None:intergenic	30.0%
TTATGTCTTGTAAGTACTTC+TGG	+	tig0021212:84655-84674	Msa1389120:intron	30.0%
TGATTCCTGATAGTACATAA+AGG	+	tig0021212:84922-84941	Msa1389120:intron	30.0%
GATTCCTGATAGTACATAAA+GGG	+	tig0021212:84923-84942	Msa1389120:intron	30.0%
AAGAAAGGAAACTAACTAAG+TGG	-	tig0021212:85075-85094	None:intergenic	30.0%
AATTGTATTACATTCGACCA+AGG	-	tig0021212:85103-85122	None:intergenic	30.0%
TAAGTCATGTGAATTTGAGA+AGG	+	tig0021212:85612-85631	Msa1389120:CDS	30.0%
CATAATCACATTATCATCCT+TGG	-	tig0021212:85660-85679	Msa1389130:three_prime_UTR	30.0%
TTCACGTGTAGATTAAGTAT+TGG	+	tig0021212:85864-85883	Msa1389120:intron	30.0%
TGAAGCTGACCAAAAAATTT+AGG	+	tig0021212:86062-86081	Msa1389120:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021212	gene	84555	86319	84555	ID=Msa1389120;Name=Msa1389120
tig0021212	mRNA	84555	86319	84555	ID=Msa1389120-mRNA-1;Parent=Msa1389120;Name=Msa1389120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=204\|1\|1\|1\|0.5\|0.33\|3\|236\|124
tig0021212	exon	84555	84625	84555	ID=Msa1389120-mRNA-1:exon:11449;Parent=Msa1389120-mRNA-1
tig0021212	exon	85454	85781	85454	ID=Msa1389120-mRNA-1:exon:11450;Parent=Msa1389120-mRNA-1
tig0021212	exon	85904	86319	85904	ID=Msa1389120-mRNA-1:exon:11451;Parent=Msa1389120-mRNA-1
tig0021212	five_prime_UTR	84555	84625	84555	ID=Msa1389120-mRNA-1:five_prime_utr;Parent=Msa1389120-mRNA-1
tig0021212	five_prime_UTR	85454	85586	85454	ID=Msa1389120-mRNA-1:five_prime_utr;Parent=Msa1389120-mRNA-1
tig0021212	CDS	85587	85781	85587	ID=Msa1389120-mRNA-1:cds;Parent=Msa1389120-mRNA-1
tig0021212	CDS	85904	86083	85904	ID=Msa1389120-mRNA-1:cds;Parent=Msa1389120-mRNA-1
tig0021212	three_prime_UTR	86084	86319	86084	ID=Msa1389120-mRNA-1:three_prime_utr;Parent=Msa1389120-mRNA-1

Gene Sequence	>Msa1389120 ATGCAAAGCATAAAGAAATCTATACTAAGTCATGTGAATTTGAGAAGGTCAACTGAAAGATGGTTTTTGGCCAAGGATGATAATGTGATTATGCATTTGAGATGTTGGTGCTCTTCAGCAGGTGCCAGCTCTGATCCGATACTAGACCGAGTAATCAGACTGGTCAAGAAATATGATAAAATTAATGCAGCAAAGGTTACTGAAGCAGCTGATTTTCAAAAGGACTTAAACCTGGACAGCTTGGATAGGGTTGAGCTTATTATGGCTCTTGAAGAAGAATTTTCCATCGAAATTCCTGATGAGAAAGCAGATAAGCTTACTTGCTGTACCGATGTTGCAAAGTACATAGCCTCTGAAGCTGACCAAAAAATTTAG
Protein sequence	>Msa1389120 MQSIKKSILSHVNLRRSTERWFLAKDDNVIMHLRCWCSSAGASSDPILDRVIRLVKKYDKINAAKVTEAADFQKDLNLDSLDRVELIMALEEEFSIEIPDEKADKLTCCTDVAKYIASEADQKI*