AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835970 MtrunA17_Chr5g0401811 98.214 504 9 0 1 504 1 504 0.0 1018
Msa0835970 MtrunA17_Chr4g0053291 68.482 514 134 9 1 501 1 499 0.0 644
Msa0835970 MtrunA17_Chr3g0140951 28.328 293 159 9 151 434 188 438 1.16e-24 106
Msa0835970 MtrunA17_Chr3g0140001 28.947 342 180 13 113 432 131 431 1.48e-23 103
Msa0835970 MtrunA17_Chr7g0263751 26.168 214 122 5 147 359 101 279 5.79e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835970 AT5G67230.1 62.868 509 162 8 1 499 1 492 0.0 645
Msa0835970 AT4G36890.1 67.396 457 127 8 1 439 1 453 0.0 606
Msa0835970 AT1G27600.2 30.201 298 156 10 150 437 139 394 4.15e-26 110
Msa0835970 AT1G27600.1 30.201 298 156 10 150 437 139 394 4.15e-26 110
Msa0835970 AT2G37090.1 24.870 386 225 21 40 416 18 347 1.85e-13 72.0

Find 155 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAGACTGCTTCAATTAT+TGG 0.098423 5_4:-9349041 Msa0835970:CDS
TCTTTCATATGAACGGATTT+AGG 0.125113 5_4:+9345755 None:intergenic
TGATGCGTCTTCATGCTTTA+AGG 0.188622 5_4:-9348935 Msa0835970:intron
CTTCAATTCATTACGATATA+CGG 0.199782 5_4:-9347708 Msa0835970:CDS
AAGAATTTGAATTGATTAAA+AGG 0.205637 5_4:-9345913 Msa0835970:three_prime_UTR
GCTTCAATTATTGGAAAATC+TGG 0.212918 5_4:-9349032 Msa0835970:CDS
ACTTCTACTGCGTCTGGATC+TGG 0.214817 5_4:+9346065 None:intergenic
CTTTCATATGAACGGATTTA+GGG 0.237938 5_4:+9345756 None:intergenic
TTATTGGAAAATCTGGATTA+AGG 0.251089 5_4:-9349025 Msa0835970:CDS
TGCTTAATCAGCCTCGTTCT+CGG 0.309400 5_4:-9349488 Msa0835970:CDS
CCGACAAAATTTGAATGGTC+TGG 0.319336 5_4:-9347644 Msa0835970:CDS
ATGTCTATCCTCCCACAAAC+TGG 0.330083 5_4:+9348971 None:intergenic
TGATAGTAATATGCATAATA+TGG 0.344407 5_4:-9347915 Msa0835970:CDS
CGATAAGCCAGAGTGGATTA+AGG 0.360709 5_4:-9347582 Msa0835970:CDS
TGCAGCTGAAATTTCTTCAT+TGG 0.365838 5_4:-9347819 Msa0835970:CDS
AACATCCTTCCAAAGTAATC+TGG 0.378146 5_4:+9347607 None:intergenic
GGGAGTTCAGGAGGAGAGTC+TGG 0.378580 5_4:+9346165 None:intergenic
TCTCTTACTTCTACTGCGTC+TGG 0.379222 5_4:+9346059 None:intergenic
CGACAAAATTTGAATGGTCT+GGG 0.388127 5_4:-9347643 Msa0835970:CDS
ATGGGTGATTGACCCTCCTT+TGG 0.392966 5_4:-9346220 Msa0835970:CDS
TTCATTACTTCCACAGGATC+CGG 0.393487 5_4:+9349260 None:intergenic
AATGAACAGAGATTGTTGTT+TGG 0.396717 5_4:-9349209 Msa0835970:CDS
AGGAGAAGCTGATGTCTTCT+TGG 0.397900 5_4:-9345893 Msa0835970:three_prime_UTR
GAACAAACCGAGATATGAAT+TGG 0.407021 5_4:-9345991 Msa0835970:exon
GATTAAGGATTATTCATGTT+GGG 0.408461 5_4:-9349010 Msa0835970:CDS
GATGCGGCCATGGCCGAATC+CGG 0.419202 5_4:+9349282 None:intergenic
GGAGACACGGGATCCGGATT+CGG 0.428474 5_4:-9349295 Msa0835970:CDS
GGCCATGGAGTGCGTTTCGA+TGG 0.429896 5_4:+9346186 None:intergenic
TTCCACCGGAACAGTAATTC+CGG 0.429983 5_4:+9349376 None:intergenic
ACTTGGATTGTGGTTGAAGC+TGG 0.431515 5_4:-9349074 Msa0835970:CDS
AGAAAACAAGACGAGAAAAT+CGG 0.438239 5_4:+9349462 None:intergenic
AATTGTCGCCGGTGACTTAA+CGG 0.438702 5_4:+9349538 None:intergenic
CAACAGAATGTTCTAACAAA+CGG 0.440408 5_4:-9349350 Msa0835970:CDS
AACAGAATGTTCTAACAAAC+GGG 0.445176 5_4:-9349349 Msa0835970:CDS
TCAGAAAATGCCCAGTTTGT+GGG 0.445775 5_4:-9348982 Msa0835970:CDS
CGTATATCGTAATGAATTGA+AGG 0.445991 5_4:+9347709 None:intergenic
CTTCTACTGCGTCTGGATCT+GGG 0.446602 5_4:+9346066 None:intergenic
TACACCGTTCCGTTCACCTC+CGG 0.446809 5_4:-9349407 Msa0835970:CDS
ATGAAATTCAGAGTGTGAAA+TGG 0.447404 5_4:-9347883 Msa0835970:CDS
GATTCGGCCATGGCCGCATC+CGG 0.448954 5_4:-9349279 Msa0835970:CDS
ATCAGAAAATGCCCAGTTTG+TGG 0.453676 5_4:-9348983 Msa0835970:CDS
GAGAAGAAGATGGTGGTGTT+GGG 0.453687 5_4:+9349790 None:intergenic
CTCTGAAGCTGTTTGCTCTA+CGG 0.457723 5_4:+9349588 None:intergenic
TGCAACGTTGGCTGTCTTGT+GGG 0.460080 5_4:-9345707 Msa0835970:three_prime_UTR
TTCACCTCCGGCACCGGCGC+CGG 0.460400 5_4:-9349395 Msa0835970:CDS
TGCGCTTTCATTACTTCCAC+AGG 0.460964 5_4:+9349254 None:intergenic
GGATTAAGGATTATTCATGT+TGG 0.462578 5_4:-9349011 Msa0835970:CDS
GAAATGGATCGGTGCTGTTT+CGG 0.465735 5_4:-9347867 Msa0835970:CDS
AGAGGTTTAGATTCAGATAA+CGG 0.468125 5_4:-9349569 Msa0835970:CDS
TGTTGAATTCCAGATTACTT+TGG 0.473184 5_4:-9347616 Msa0835970:CDS
CGGAACGGTGTAAATATTAG+TGG 0.475264 5_4:+9349418 None:intergenic
TGGTTGGGAGACACGGGATC+CGG 0.475971 5_4:-9349301 Msa0835970:CDS
CACCAAAGTGATTGGTGTAC+AGG 0.476382 5_4:-9346028 Msa0835970:CDS
CGGCGCCGGAATTACTGTTC+CGG 0.479560 5_4:-9349381 Msa0835970:CDS
CGCCGGTGACTTAACGGCGC+CGG 0.479709 5_4:+9349544 None:intergenic
CCGTTCATATGAAAGATTAG+AGG 0.480690 5_4:-9345748 Msa0835970:three_prime_UTR
GTTCCGTTCACCTCCGGCAC+CGG 0.481759 5_4:-9349401 Msa0835970:CDS
CGCCGGCGCCGTTAAGTCAC+CGG 0.482259 5_4:-9349546 Msa0835970:CDS
TGTTCTAACAAACGGGAGTT+CGG 0.482950 5_4:-9349342 Msa0835970:CDS
TGGCGAGTAGAGTGGTGGTT+GGG 0.483889 5_4:-9349316 Msa0835970:CDS
ACAGGATCCGGATGCGGCCA+TGG 0.485837 5_4:+9349272 None:intergenic
AGTAATTCCGGCGCCGGTGC+CGG 0.486108 5_4:+9349388 None:intergenic
AACAAACGGGAGTTCGGTAG+TGG 0.486109 5_4:-9349336 Msa0835970:CDS
CCTCTAATCTTTCATATGAA+CGG 0.487262 5_4:+9345748 None:intergenic
GGAGAAGAAGATGGTGGTGT+TGG 0.488012 5_4:+9349789 None:intergenic
AAGCATGACACCAAAGTGAT+TGG 0.488095 5_4:-9346036 Msa0835970:CDS
TGTGAAAGTAAGAAGCAAGT+TGG 0.490879 5_4:+9349768 None:intergenic
AGATGCACCAATTCATATCT+CGG 0.491651 5_4:+9345984 None:intergenic
GTGGCGAGTAGAGTGGTGGT+TGG 0.496112 5_4:-9349317 Msa0835970:CDS
GCAGGACCTTGCACCGGCAT+TGG 0.498839 5_4:+9347767 None:intergenic
TTCAATTCATTACGATATAC+GGG 0.499087 5_4:-9347707 Msa0835970:CDS
TGTTGCCGACAAAATTTGAA+TGG 0.500655 5_4:-9347649 Msa0835970:CDS
CATCGAATAAAATTGAATAC+AGG 0.505551 5_4:+9345681 None:intergenic
GGTGGAGGGACTCACCGAGC+AGG 0.510465 5_4:+9347410 None:intergenic
GTGCAGTTTACATTGATGAC+CGG 0.511167 5_4:-9347679 Msa0835970:CDS
GCGCCGGTGCCGGAGGTGAA+CGG 0.511357 5_4:+9349398 None:intergenic
TTGCAACGTTGGCTGTCTTG+TGG 0.512397 5_4:-9345708 Msa0835970:three_prime_UTR
GATTGTGAGAAAAGAGAAGC+TGG 0.516119 5_4:-9347960 Msa0835970:CDS
TTGTCGGCAACACTGGTGCC+CGG 0.518942 5_4:+9347660 None:intergenic
ACCTTGCACCGGCATTGGCA+TGG 0.519908 5_4:+9347772 None:intergenic
TGGATCGGTGCTGTTTCGGT+TGG 0.520170 5_4:-9347863 Msa0835970:CDS
AAGGATCTTGATGCAGTGGA+TGG 0.529769 5_4:-9347563 Msa0835970:CDS
GCCATGGAGTGCGTTTCGAT+GGG 0.536780 5_4:+9346187 None:intergenic
ATTCAAATTCTTGTCGCAGA+AGG 0.537501 5_4:+9345924 None:intergenic
GTGCAAGGTCCTGCTTGTAA+TGG 0.539674 5_4:-9347758 Msa0835970:CDS
TTTCAAGCGATGCATTTGAC+TGG 0.539811 5_4:-9349134 Msa0835970:CDS
AGGATCTTGATGCAGTGGAT+GGG 0.542197 5_4:-9347562 Msa0835970:CDS
TCAGGAGGAGAGTCTGGCCA+TGG 0.544157 5_4:+9346171 None:intergenic
TAGTGGATGAAGTTGAAAAG+AGG 0.544989 5_4:+9349435 None:intergenic
AGAGTGGTGGTTGGGAGACA+CGG 0.545003 5_4:-9349308 Msa0835970:CDS
TGAGGAAACCATGCCAATGC+CGG 0.551614 5_4:-9347780 Msa0835970:CDS
ACCATGCCAATGCCGGTGCA+AGG 0.552760 5_4:-9347773 Msa0835970:CDS
CAGCTGCATCAACAGAATGA+AGG 0.558512 5_4:+9347834 None:intergenic
TCAAGATCCTTAATCCACTC+TGG 0.559323 5_4:+9347575 None:intergenic
AAGCAAGTTGGAGAAGAAGA+TGG 0.562027 5_4:+9349780 None:intergenic
TTGTAATGGTACTGATAAGT+TGG 0.564365 5_4:-9347744 Msa0835970:CDS
CGCCGGAATTACTGTTCCGG+TGG 0.564470 5_4:-9349378 Msa0835970:CDS
AATTCCGGCGCCGGTGCCGG+AGG 0.565133 5_4:+9349391 None:intergenic
CGTTCATATGAAAGATTAGA+GGG 0.565374 5_4:-9345747 Msa0835970:three_prime_UTR
ACGGGATCCGGATTCGGCCA+TGG 0.566818 5_4:-9349289 Msa0835970:CDS
TCATTAGATGGGAGTTCAGG+AGG 0.569861 5_4:+9346156 None:intergenic
TTGTGTTTATAAGAGAATGC+TGG 0.571085 5_4:-9345947 Msa0835970:three_prime_UTR
GAATTCCAGATTACTTTGGA+AGG 0.571302 5_4:-9347612 Msa0835970:CDS
CGGAACAGTAATTCCGGCGC+CGG 0.571687 5_4:+9349382 None:intergenic
GTATGATCTGACTTGGATTG+TGG 0.571981 5_4:-9349084 Msa0835970:CDS
TGCAGTTTACATTGATGACC+GGG 0.572154 5_4:-9347678 Msa0835970:CDS
ATGGTACTGATAAGTTGGTC+GGG 0.572519 5_4:-9347739 Msa0835970:CDS
ATGGCCGCATCCGGATCCTG+TGG 0.574190 5_4:-9349270 Msa0835970:CDS
ACTTCCACAGGATCCGGATG+CGG 0.575433 5_4:+9349266 None:intergenic
ACAATCCAAGTCAGATCATA+CGG 0.576986 5_4:+9349086 None:intergenic
AGACACGAATGCACATATGC+TGG 0.577405 5_4:+9345835 None:intergenic
ACATTCTGTTGAGTTTCCAC+CGG 0.578267 5_4:+9349362 None:intergenic
GGATCTTGATGCAGTGGATG+GGG 0.580516 5_4:-9347561 Msa0835970:CDS
CGTAGAGCAAACAGCTTCAG+AGG 0.581025 5_4:-9349587 Msa0835970:CDS
GACCTGTACACCAATCACTT+TGG 0.581284 5_4:+9346026 None:intergenic
TCCCATCGAAACGCACTCCA+TGG 0.588526 5_4:-9346188 Msa0835970:CDS
AATGGTACTGATAAGTTGGT+CGG 0.589439 5_4:-9347740 Msa0835970:CDS
TGGATTGTGGTTGAAGCTGG+TGG 0.591755 5_4:-9349071 Msa0835970:CDS
TTAGATTCAGATAACGGCGC+CGG 0.591877 5_4:-9349563 Msa0835970:CDS
CAGACAGCAAATTCCCTGCT+CGG 0.596900 5_4:-9347424 Msa0835970:intron
TGTCTATCCTCCCACAAACT+GGG 0.597037 5_4:+9348972 None:intergenic
GAGTGGTGGTTGGGAGACAC+GGG 0.598857 5_4:-9349307 Msa0835970:CDS
CTTGATGCAGTGGATGGGGA+TGG 0.601002 5_4:-9347557 Msa0835970:CDS
GTGAGAAAAGAGAAGCTGGA+TGG 0.604430 5_4:-9347956 Msa0835970:CDS
GCAACCACCAAAGCAAAACA+TGG 0.606572 5_4:+9347462 None:intergenic
GTAGAACCACTAGGGAGTTG+TGG 0.607713 5_4:-9347488 Msa0835970:CDS
GTGGAAGTAATGAAAGCGCA+TGG 0.608289 5_4:-9349251 Msa0835970:CDS
TTCGGTAGTGGCGAGTAGAG+TGG 0.610166 5_4:-9349324 Msa0835970:CDS
ACCTCTGTGGTAGAACCACT+AGG 0.613698 5_4:-9347497 Msa0835970:CDS
CAAGTTGGAGAAGAAGATGG+TGG 0.620394 5_4:+9349783 None:intergenic
GATGGGACTGTGATGTCCAA+AGG 0.622491 5_4:+9346204 None:intergenic
AAAATCGGAAGCCGAGAACG+AGG 0.625000 5_4:+9349477 None:intergenic
GGGACTGTGATGTCCAAAGG+AGG 0.626469 5_4:+9346207 None:intergenic
ATTCATTACGATATACGGGA+AGG 0.635243 5_4:-9347703 Msa0835970:CDS
GTGGAGGGACTCACCGAGCA+GGG 0.637902 5_4:+9347411 None:intergenic
GATTAAGGATCTTGATGCAG+TGG 0.642803 5_4:-9347567 Msa0835970:CDS
TTACAAGCAGGACCTTGCAC+CGG 0.643021 5_4:+9347761 None:intergenic
GAAAATGCCCAGTTTGTGGG+AGG 0.647991 5_4:-9348979 Msa0835970:CDS
ACTAGCCAGAAAATTGTCGC+CGG 0.649362 5_4:+9349527 None:intergenic
TTGTACCGTATGATCTGACT+TGG 0.651229 5_4:-9349091 Msa0835970:CDS
CCTCTGTGGTAGAACCACTA+GGG 0.659169 5_4:-9347496 Msa0835970:CDS
TTATCAGTACCATTACAAGC+AGG 0.660972 5_4:+9347749 None:intergenic
GGTGCCGGAGGTGAACGGAA+CGG 0.661694 5_4:+9349403 None:intergenic
AGCATTCTCTTATAAACACA+AGG 0.671290 5_4:+9345949 None:intergenic
GGACTGTGATGTCCAAAGGA+GGG 0.672528 5_4:+9346208 None:intergenic
ATTCAGAGTGTGAAATGGAT+CGG 0.672674 5_4:-9347878 Msa0835970:CDS
GGTAGTGGCGAGTAGAGTGG+TGG 0.679053 5_4:-9349321 Msa0835970:CDS
TGAAAAGTCCTCACATACGT+TGG 0.684360 5_4:+9349152 None:intergenic
TTTGCTCAAGAGTACCTCTG+TGG 0.694643 5_4:-9347510 Msa0835970:CDS
TGGCGTCCACAACTCCCTAG+TGG 0.699177 5_4:+9347482 None:intergenic
GTACTCTTGAGCAAAGACAG+TGG 0.702361 5_4:+9347518 None:intergenic
TTGTGACACCAACGTATGTG+AGG 0.703517 5_4:-9349160 Msa0835970:CDS
GTACTGATAAGTTGGTCGGG+TGG 0.704370 5_4:-9347736 Msa0835970:CDS
ATGTTGACGATAAGCCAGAG+TGG 0.723393 5_4:-9347589 Msa0835970:CDS
CCCTAGTGGTTCTACCACAG+AGG 0.724372 5_4:+9347496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATAAAAAAAAAA+GGG + chr5_4:9347430-9347449 None:intergenic 0.0%
!! AAAATAAAAATAAAAAAAAA+AGG + chr5_4:9347431-9347450 None:intergenic 0.0%
!! ATAAAAATAAAAAAAAAAGG+GGG + chr5_4:9347428-9347447 None:intergenic 10.0%
!! AAAAATGTAAAAGAAAAAAT+GGG + chr5_4:9349668-9349687 None:intergenic 10.0%
!! AAAAAATGTAAAAGAAAAAA+TGG + chr5_4:9349669-9349688 None:intergenic 10.0%
!!! TTTTACTTGATTTGTTATTA+TGG - chr5_4:9346585-9346604 Msa0835970:intron 15.0%
!!! TGATTTTAGTCTTAAATTTA+TGG - chr5_4:9347087-9347106 Msa0835970:intron 15.0%
!! AAGAATTTGAATTGATTAAA+AGG - chr5_4:9349556-9349575 Msa0835970:CDS 15.0%
!!! TTTTTTTTCCTTATTTTTCT+TGG - chr5_4:9349685-9349704 Msa0835970:five_prime_UTR 15.0%
!!! TTTTATTTTATGTCTTGGTT+TGG + chr5_4:9345761-9345780 None:intergenic 20.0%
!!! TGATGTTTTATTTTATGTCT+TGG + chr5_4:9345766-9345785 None:intergenic 20.0%
!!! AAGTAAAAGCATAAACTAAA+AGG + chr5_4:9346573-9346592 None:intergenic 20.0%
!!! TGTAAAATTGATTTTTGTCA+TGG - chr5_4:9346996-9347015 Msa0835970:intron 20.0%
!!! TTGATTTTAACCATAAAAGT+GGG + chr5_4:9347165-9347184 None:intergenic 20.0%
!!! ATTGATTTTAACCATAAAAG+TGG + chr5_4:9347166-9347185 None:intergenic 20.0%
!! GTATTTAGTAATTAAGTCAA+AGG + chr5_4:9347331-9347350 None:intergenic 20.0%
!! TGATAGTAATATGCATAATA+TGG - chr5_4:9347554-9347573 Msa0835970:CDS 20.0%
!!! GTCAAACAATTCAAATTTTA+GGG + chr5_4:9348245-9348264 None:intergenic 20.0%
!!! TGTCAAACAATTCAAATTTT+AGG + chr5_4:9348246-9348265 None:intergenic 20.0%
!! ATTAAGATAGTCATGATTAT+AGG + chr5_4:9348358-9348377 None:intergenic 20.0%
!! ATAATCATGACTATCTTAAT+AGG - chr5_4:9348358-9348377 Msa0835970:intron 20.0%
!! AATGAAAGATTCAATTTATG+TGG - chr5_4:9348627-9348646 Msa0835970:intron 20.0%
!! ATGAAAGATTCAATTTATGT+GGG - chr5_4:9348628-9348647 Msa0835970:intron 20.0%
!! ATACAATTGGATATAATGAT+TGG - chr5_4:9348753-9348772 Msa0835970:intron 20.0%
!! TACAATTGGATATAATGATT+GGG - chr5_4:9348754-9348773 Msa0835970:intron 20.0%
!!! ATTTATTTCTAGGTTCTTAT+AGG - chr5_4:9349086-9349105 Msa0835970:CDS 20.0%
!!! CTTTTTCATTTTCATTAGAT+GGG + chr5_4:9349327-9349346 None:intergenic 20.0%
!!! ACTTTTTCATTTTCATTAGA+TGG + chr5_4:9349328-9349347 None:intergenic 20.0%
! TTATTGGAAAATCTGGATTA+AGG - chr5_4:9346444-9346463 Msa0835970:intron 25.0%
! GATTAAGGATTATTCATGTT+GGG - chr5_4:9346459-9346478 Msa0835970:intron 25.0%
!! ATGTGAAAGGATTTTATGTT+TGG - chr5_4:9346832-9346851 Msa0835970:intron 25.0%
! TGAATTGAATGACAAGTATA+AGG - chr5_4:9346872-9346891 Msa0835970:intron 25.0%
!!! TATTTGGTTTCAAGTTTCTA+GGG - chr5_4:9346953-9346972 Msa0835970:intron 25.0%
!!! AAATTGATTTTTGTCATGGT+TGG - chr5_4:9347000-9347019 Msa0835970:intron 25.0%
! TGAATGTATTTGTGTAAAAG+TGG + chr5_4:9347119-9347138 None:intergenic 25.0%
! CTTCAATTCATTACGATATA+CGG - chr5_4:9347761-9347780 Msa0835970:CDS 25.0%
! TTCAATTCATTACGATATAC+GGG - chr5_4:9347762-9347781 Msa0835970:CDS 25.0%
!! TGAAAACGTTTAGAATATAG+AGG + chr5_4:9348083-9348102 None:intergenic 25.0%
!!! TGTTTTTTACACTATCGTAT+TGG + chr5_4:9348175-9348194 None:intergenic 25.0%
!!! AAATTTTAGGGAGTAGTTTT+TGG + chr5_4:9348233-9348252 None:intergenic 25.0%
! ATTCTAAGCAATGTTCTTAT+GGG + chr5_4:9348497-9348516 None:intergenic 25.0%
! TATTCTAAGCAATGTTCTTA+TGG + chr5_4:9348498-9348517 None:intergenic 25.0%
! ATAACATTTCTACTCCAATA+TGG + chr5_4:9348529-9348548 None:intergenic 25.0%
! TATTGGAGTAGAAATGTTAT+AGG - chr5_4:9348529-9348548 Msa0835970:intron 25.0%
! ACTTTATGACTTTCTTATAC+AGG - chr5_4:9348656-9348675 Msa0835970:intron 25.0%
!!! TCTAACAAATCCTATTTTTC+TGG + chr5_4:9348811-9348830 None:intergenic 25.0%
!!! GATTTGTTAGATCAAAATGT+TGG - chr5_4:9348820-9348839 Msa0835970:intron 25.0%
!! TTAGATCAAAATGTTGGTAA+CGG - chr5_4:9348826-9348845 Msa0835970:intron 25.0%
! GAAATCATTAACAAGTGATT+TGG + chr5_4:9348874-9348893 None:intergenic 25.0%
!! CAAATTTTATGTCTGAGAAT+GGG - chr5_4:9348967-9348986 Msa0835970:CDS 25.0%
!! AAATTTTATGTCTGAGAATG+GGG - chr5_4:9348968-9348987 Msa0835970:CDS 25.0%
! ATGTTGTTAAAATGTGATCA+TGG - chr5_4:9349062-9349081 Msa0835970:CDS 25.0%
!! TGATCATGGAATTTATTTCT+AGG - chr5_4:9349076-9349095 Msa0835970:CDS 25.0%
!! TTTTGTACTTCAATTTTCGA+CGG - chr5_4:9349115-9349134 Msa0835970:CDS 25.0%
! CAAATATGCAAATAAATGCA+AGG + chr5_4:9349183-9349202 None:intergenic 25.0%
!!! TTTTTCCTTATTTTTCTTGG+AGG - chr5_4:9349688-9349707 Msa0835970:five_prime_UTR 25.0%
! CATCGAATAAAATTGAATAC+AGG + chr5_4:9349791-9349810 None:intergenic 25.0%
AGAGGTTTAGATTCAGATAA+CGG - chr5_4:9345900-9345919 Msa0835970:three_prime_UTR 30.0%
AGAAAACAAGACGAGAAAAT+CGG + chr5_4:9346010-9346029 None:intergenic 30.0%
CAACAGAATGTTCTAACAAA+CGG - chr5_4:9346119-9346138 Msa0835970:CDS 30.0%
AACAGAATGTTCTAACAAAC+GGG - chr5_4:9346120-9346139 Msa0835970:CDS 30.0%
! AATGAACAGAGATTGTTGTT+TGG - chr5_4:9346260-9346279 Msa0835970:intron 30.0%
!! TCACAACAATCACTTTTCTA+GGG + chr5_4:9346295-9346314 None:intergenic 30.0%
AATGAGACTGCTTCAATTAT+TGG - chr5_4:9346428-9346447 Msa0835970:intron 30.0%
GCTTCAATTATTGGAAAATC+TGG - chr5_4:9346437-9346456 Msa0835970:intron 30.0%
GGATTAAGGATTATTCATGT+TGG - chr5_4:9346458-9346477 Msa0835970:intron 30.0%
GATTTGCAGTAGAATCTTTA+TGG - chr5_4:9346621-9346640 Msa0835970:intron 30.0%
TGTTTGAATAATTAGTGTCG+CGG - chr5_4:9346649-9346668 Msa0835970:intron 30.0%
ATGATTGAATATGCCAAATG+TGG - chr5_4:9346719-9346738 Msa0835970:intron 30.0%
AACACATACTAAACCACATT+TGG + chr5_4:9346735-9346754 None:intergenic 30.0%
AATGTGGTTTAGTATGTGTT+TGG - chr5_4:9346735-9346754 Msa0835970:intron 30.0%
!! TGATTCTGTGAAGTTGATTT+TGG - chr5_4:9346791-9346810 Msa0835970:intron 30.0%
AGTGAATTGTTAGATGTGAA+AGG - chr5_4:9346819-9346838 Msa0835970:intron 30.0%
!! GTATTTGGTTTCAAGTTTCT+AGG - chr5_4:9346952-9346971 Msa0835970:intron 30.0%
CAAGTAGAATTCATTCTACA+AGG + chr5_4:9347034-9347053 None:intergenic 30.0%
! AAGTTAGAATTTGCAGCTTT+TGG - chr5_4:9347054-9347073 Msa0835970:intron 30.0%
!! TTACATTCAACCCACTTTTA+TGG - chr5_4:9347152-9347171 Msa0835970:intron 30.0%
TATATGTTTGATTCCACTTC+TGG + chr5_4:9347219-9347238 None:intergenic 30.0%
GCATTACAAGGTTTCAAAAA+AGG + chr5_4:9347309-9347328 None:intergenic 30.0%
!! ATTAAGTCAAAGGCATTACA+AGG + chr5_4:9347321-9347340 None:intergenic 30.0%
CACAAGGAAAAATCAACAAA+AGG + chr5_4:9347480-9347499 None:intergenic 30.0%
!!! TTGTTGATTTTTCCTTGTGA+TGG - chr5_4:9347481-9347500 Msa0835970:CDS 30.0%
ATGAAATTCAGAGTGTGAAA+TGG - chr5_4:9347586-9347605 Msa0835970:CDS 30.0%
!! TCTTCATTGGTTCAAAAAGA+AGG - chr5_4:9347663-9347682 Msa0835970:CDS 30.0%
!! TTGTAATGGTACTGATAAGT+TGG - chr5_4:9347725-9347744 Msa0835970:CDS 30.0%
CGTATATCGTAATGAATTGA+AGG + chr5_4:9347763-9347782 None:intergenic 30.0%
TGTTGAATTCCAGATTACTT+TGG - chr5_4:9347853-9347872 Msa0835970:CDS 30.0%
! AAACGTTTAGAATATAGAGG+TGG + chr5_4:9348080-9348099 None:intergenic 30.0%
GTTTGGCAAATGAAAATTAC+GGG + chr5_4:9348112-9348131 None:intergenic 30.0%
CGTTTGGCAAATGAAAATTA+CGG + chr5_4:9348113-9348132 None:intergenic 30.0%
CATAGAAATAAGACATCGTT+TGG + chr5_4:9348129-9348148 None:intergenic 30.0%
TAAGTAAGAACTACATAAGC+TGG + chr5_4:9348442-9348461 None:intergenic 30.0%
TTGAAAAAAATTCCGCACAA+AGG - chr5_4:9348599-9348618 Msa0835970:intron 30.0%
TGAAAAAAATTCCGCACAAA+GGG - chr5_4:9348600-9348619 Msa0835970:intron 30.0%
ATCAGTCTCTTATTGTATGT+CGG - chr5_4:9348722-9348741 Msa0835970:intron 30.0%
AATTGGATATAATGATTGGG+TGG - chr5_4:9348757-9348776 Msa0835970:intron 30.0%
ATTGGATATAATGATTGGGT+GGG - chr5_4:9348758-9348777 Msa0835970:intron 30.0%
!!! AATCCTATTTTTCTGGAGTT+AGG + chr5_4:9348804-9348823 None:intergenic 30.0%
! GCAAATTTTATGTCTGAGAA+TGG - chr5_4:9348966-9348985 Msa0835970:CDS 30.0%
! AATTTTATGTCTGAGAATGG+GGG - chr5_4:9348969-9348988 Msa0835970:CDS 30.0%
TTGCACTAATTGTAGAAGTA+GGG + chr5_4:9349009-9349028 None:intergenic 30.0%
ATTGCACTAATTGTAGAAGT+AGG + chr5_4:9349010-9349029 None:intergenic 30.0%
! TTTGTACTTCAATTTTCGAC+GGG - chr5_4:9349116-9349135 Msa0835970:CDS 30.0%
TACATAATCCATGCACTATT+TGG + chr5_4:9349146-9349165 None:intergenic 30.0%
GAAATAGCATCATATAGTCA+GGG + chr5_4:9349223-9349242 None:intergenic 30.0%
TGAAATAGCATCATATAGTC+AGG + chr5_4:9349224-9349243 None:intergenic 30.0%
AGCATTCTCTTATAAACACA+AGG + chr5_4:9349523-9349542 None:intergenic 30.0%
TTGTGTTTATAAGAGAATGC+TGG - chr5_4:9349522-9349541 Msa0835970:CDS 30.0%
! ATCTGTTGAGAAGCTTTTTA+TGG - chr5_4:9349607-9349626 Msa0835970:CDS 30.0%
! CTTTCATATGAACGGATTTA+GGG + chr5_4:9349716-9349735 None:intergenic 30.0%
! TCTTTCATATGAACGGATTT+AGG + chr5_4:9349717-9349736 None:intergenic 30.0%
CCTCTAATCTTTCATATGAA+CGG + chr5_4:9349724-9349743 None:intergenic 30.0%
CGTTCATATGAAAGATTAGA+GGG - chr5_4:9349722-9349741 Msa0835970:five_prime_UTR 30.0%
TGTGAAAGTAAGAAGCAAGT+TGG + chr5_4:9345704-9345723 None:intergenic 35.0%
!!! ATTTTCTGGCTAGTACTTCA+CGG - chr5_4:9345951-9345970 Msa0835970:three_prime_UTR 35.0%
! TAGTGGATGAAGTTGAAAAG+AGG + chr5_4:9346037-9346056 None:intergenic 35.0%
!! GTCACAACAATCACTTTTCT+AGG + chr5_4:9346296-9346315 None:intergenic 35.0%
ACAATCCAAGTCAGATCATA+CGG + chr5_4:9346386-9346405 None:intergenic 35.0%
AATTAGTGTCGCGGTATTTA+TGG - chr5_4:9346658-9346677 Msa0835970:intron 35.0%
CATGATTCTCCGCAATATAA+GGG + chr5_4:9346702-9346721 None:intergenic 35.0%
TCATGATTCTCCGCAATATA+AGG + chr5_4:9346703-9346722 None:intergenic 35.0%
!! TTAGTATGTGTTTGGTTCTG+TGG - chr5_4:9346743-9346762 Msa0835970:intron 35.0%
!! TTCTAGCTTCAAGTCAGAAT+CGG - chr5_4:9346928-9346947 Msa0835970:intron 35.0%
TTCACAACAAGACAACAATC+TGG + chr5_4:9347286-9347305 None:intergenic 35.0%
!! ATTTTTCCTTGTGATGGAAC+AGG - chr5_4:9347487-9347506 Msa0835970:CDS 35.0%
ATTCAGAGTGTGAAATGGAT+CGG - chr5_4:9347591-9347610 Msa0835970:CDS 35.0%
TGCAGCTGAAATTTCTTCAT+TGG - chr5_4:9347650-9347669 Msa0835970:CDS 35.0%
TTATCAGTACCATTACAAGC+AGG + chr5_4:9347723-9347742 None:intergenic 35.0%
!! AATGGTACTGATAAGTTGGT+CGG - chr5_4:9347729-9347748 Msa0835970:CDS 35.0%
ATTCATTACGATATACGGGA+AGG - chr5_4:9347766-9347785 Msa0835970:CDS 35.0%
TGTTGCCGACAAAATTTGAA+TGG - chr5_4:9347820-9347839 Msa0835970:CDS 35.0%
! CCAGACCATTCAAATTTTGT+CGG + chr5_4:9347828-9347847 None:intergenic 35.0%
CGACAAAATTTGAATGGTCT+GGG - chr5_4:9347826-9347845 Msa0835970:CDS 35.0%
GAATTCCAGATTACTTTGGA+AGG - chr5_4:9347857-9347876 Msa0835970:CDS 35.0%
AACATCCTTCCAAAGTAATC+TGG + chr5_4:9347865-9347884 None:intergenic 35.0%
! GTTTAGAATATAGAGGTGGA+GGG + chr5_4:9348076-9348095 None:intergenic 35.0%
!!! GTTTTTGGCTTTGAGCTTTT+GGG + chr5_4:9348218-9348237 None:intergenic 35.0%
!!! AGTTTTTGGCTTTGAGCTTT+TGG + chr5_4:9348219-9348238 None:intergenic 35.0%
! GTAACTGCTGAGTTTTCTTT+CGG + chr5_4:9348314-9348333 None:intergenic 35.0%
AGAATACACTGCTACCATAT+TGG - chr5_4:9348512-9348531 Msa0835970:intron 35.0%
TACTGTCTAGTGATAATAGC+TGG - chr5_4:9348575-9348594 Msa0835970:intron 35.0%
! TTTCATTTTCTCCCTTTGTG+CGG + chr5_4:9348614-9348633 None:intergenic 35.0%
TTACTATACAATCAGCCTGT+AGG + chr5_4:9348682-9348701 None:intergenic 35.0%
TCAGTCTCTTATTGTATGTC+GGG - chr5_4:9348723-9348742 Msa0835970:intron 35.0%
GTCGGGTTAATTGATACAAT+TGG - chr5_4:9348740-9348759 Msa0835970:intron 35.0%
GCTGAAGTCTATGATCAAAT+AGG + chr5_4:9348852-9348871 None:intergenic 35.0%
! TCACTTGTTAATGATTTCCC+AGG - chr5_4:9348876-9348895 Msa0835970:intron 35.0%
! CACTTGTTAATGATTTCCCA+GGG - chr5_4:9348877-9348896 Msa0835970:intron 35.0%
! ACTTGTTAATGATTTCCCAG+GGG - chr5_4:9348878-9348897 Msa0835970:intron 35.0%
!! TGCTGTGTTCTTGATAGTTT+TGG + chr5_4:9348949-9348968 None:intergenic 35.0%
AGTTTGACATCATGTGTGTT+TGG - chr5_4:9349035-9349054 Msa0835970:CDS 35.0%
TTTCTAGGTTCTTATAGGTC+AGG - chr5_4:9349091-9349110 Msa0835970:CDS 35.0%
CATCATATAGTCAGGGATAT+AGG + chr5_4:9349216-9349235 None:intergenic 35.0%
!! ATGATGCTATTTCATGCAGA+TGG - chr5_4:9349230-9349249 Msa0835970:CDS 35.0%
!! TGATGCTATTTCATGCAGAT+GGG - chr5_4:9349231-9349250 Msa0835970:CDS 35.0%
! TTTTCATTAGATGGGAGTTC+AGG + chr5_4:9349319-9349338 None:intergenic 35.0%
GAACAAACCGAGATATGAAT+TGG - chr5_4:9349478-9349497 Msa0835970:CDS 35.0%
AGATGCACCAATTCATATCT+CGG + chr5_4:9349488-9349507 None:intergenic 35.0%
ATTCAAATTCTTGTCGCAGA+AGG + chr5_4:9349548-9349567 None:intergenic 35.0%
! GTTGAGAAGCTTTTTATGGT+TGG - chr5_4:9349611-9349630 Msa0835970:CDS 35.0%
CCGTTCATATGAAAGATTAG+AGG - chr5_4:9349721-9349740 Msa0835970:five_prime_UTR 35.0%
!!! TCAACTTAGTTTTGCAACGT+TGG - chr5_4:9349750-9349769 Msa0835970:five_prime_UTR 35.0%
! GTTGGGTTTTTGTAGTTTGG+TGG + chr5_4:9345665-9345684 None:intergenic 40.0%
!! GGTGTTGGGTTTTTGTAGTT+TGG + chr5_4:9345668-9345687 None:intergenic 40.0%
! AAGCAAGTTGGAGAAGAAGA+TGG + chr5_4:9345692-9345711 None:intergenic 40.0%
CGGAACGGTGTAAATATTAG+TGG + chr5_4:9346054-9346073 None:intergenic 40.0%
ACATTCTGTTGAGTTTCCAC+CGG + chr5_4:9346110-9346129 None:intergenic 40.0%
TGTTCTAACAAACGGGAGTT+CGG - chr5_4:9346127-9346146 Msa0835970:CDS 40.0%
TTCATTACTTCCACAGGATC+CGG + chr5_4:9346212-9346231 None:intergenic 40.0%
TGAAAAGTCCTCACATACGT+TGG + chr5_4:9346320-9346339 None:intergenic 40.0%
TTTCAAGCGATGCATTTGAC+TGG - chr5_4:9346335-9346354 Msa0835970:intron 40.0%
TTGTACCGTATGATCTGACT+TGG - chr5_4:9346378-9346397 Msa0835970:intron 40.0%
!! GTATGATCTGACTTGGATTG+TGG - chr5_4:9346385-9346404 Msa0835970:intron 40.0%
ATCAGAAAATGCCCAGTTTG+TGG - chr5_4:9346486-9346505 Msa0835970:intron 40.0%
TCAGAAAATGCCCAGTTTGT+GGG - chr5_4:9346487-9346506 Msa0835970:intron 40.0%
TGATGCGTCTTCATGCTTTA+AGG - chr5_4:9346534-9346553 Msa0835970:intron 40.0%
TGTCACGATCCCTTATATTG+CGG - chr5_4:9346690-9346709 Msa0835970:intron 40.0%
CAAGTCAGAATCGGTGTATT+TGG - chr5_4:9346937-9346956 Msa0835970:intron 40.0%
GATTGTGAGAAAAGAGAAGC+TGG - chr5_4:9347509-9347528 Msa0835970:CDS 40.0%
GGTTCAAAAAGAAGGAGATG+AGG - chr5_4:9347671-9347690 Msa0835970:CDS 40.0%
!! ATGGTACTGATAAGTTGGTC+GGG - chr5_4:9347730-9347749 Msa0835970:CDS 40.0%
! GTGCAGTTTACATTGATGAC+CGG - chr5_4:9347790-9347809 Msa0835970:CDS 40.0%
! TGCAGTTTACATTGATGACC+GGG - chr5_4:9347791-9347810 Msa0835970:CDS 40.0%
! TCAAATTTTGTCGGCAACAC+TGG + chr5_4:9347819-9347838 None:intergenic 40.0%
CCGACAAAATTTGAATGGTC+TGG - chr5_4:9347825-9347844 Msa0835970:CDS 40.0%
TCAAGATCCTTAATCCACTC+TGG + chr5_4:9347897-9347916 None:intergenic 40.0%
GATTAAGGATCTTGATGCAG+TGG - chr5_4:9347902-9347921 Msa0835970:CDS 40.0%
!! ATGTTTTGCTTTGGTGGTTG+CGG - chr5_4:9348009-9348028 Msa0835970:intron 40.0%
! CGTTTAGAATATAGAGGTGG+AGG + chr5_4:9348077-9348096 None:intergenic 40.0%
! CTCAGCAGTTACAGTTTTTG+TGG - chr5_4:9348322-9348341 Msa0835970:intron 40.0%
TGGGCATCATGTGATGATAT+AGG - chr5_4:9348403-9348422 Msa0835970:intron 40.0%
TTACTTAAGCACCCACTACA+AGG - chr5_4:9348455-9348474 Msa0835970:intron 40.0%
TTATGGGTCAATGTGACTAG+AGG + chr5_4:9348481-9348500 None:intergenic 40.0%
ACTTTCTTATACAGGCCTAC+AGG - chr5_4:9348664-9348683 Msa0835970:intron 40.0%
ATAATGATTGGGTGGGTGAT+AGG - chr5_4:9348765-9348784 Msa0835970:intron 40.0%
GCACCTAACTCCAGAAAAAT+AGG - chr5_4:9348798-9348817 Msa0835970:intron 40.0%
!! AATGAAAAAGTGTTCGCTGC+AGG - chr5_4:9349337-9349356 Msa0835970:CDS 40.0%
AAGCATGACACCAAAGTGAT+TGG - chr5_4:9349433-9349452 Msa0835970:CDS 40.0%
! GAGAAGAAGATGGTGGTGTT+GGG + chr5_4:9345682-9345701 None:intergenic 45.0%
! CAAGTTGGAGAAGAAGATGG+TGG + chr5_4:9345689-9345708 None:intergenic 45.0%
!! CTCTGAAGCTGTTTGCTCTA+CGG + chr5_4:9345884-9345903 None:intergenic 45.0%
! TTAGATTCAGATAACGGCGC+CGG - chr5_4:9345906-9345925 Msa0835970:three_prime_UTR 45.0%
AATTGTCGCCGGTGACTTAA+CGG + chr5_4:9345934-9345953 None:intergenic 45.0%
ACTAGCCAGAAAATTGTCGC+CGG + chr5_4:9345945-9345964 None:intergenic 45.0%
TGCTTAATCAGCCTCGTTCT+CGG - chr5_4:9345981-9346000 Msa0835970:exon 45.0%
TTCCACCGGAACAGTAATTC+CGG + chr5_4:9346096-9346115 None:intergenic 45.0%
TGCGCTTTCATTACTTCCAC+AGG + chr5_4:9346218-9346237 None:intergenic 45.0%
! GTGGAAGTAATGAAAGCGCA+TGG - chr5_4:9346218-9346237 Msa0835970:CDS 45.0%
TTGTGACACCAACGTATGTG+AGG - chr5_4:9346309-9346328 Msa0835970:intron 45.0%
ACTTGGATTGTGGTTGAAGC+TGG - chr5_4:9346395-9346414 Msa0835970:intron 45.0%
TGTCTATCCTCCCACAAACT+GGG + chr5_4:9346500-9346519 None:intergenic 45.0%
ATGTCTATCCTCCCACAAAC+TGG + chr5_4:9346501-9346520 None:intergenic 45.0%
! AGGGTCAAAGTCGATTCTAG+AGG - chr5_4:9346972-9346991 Msa0835970:intron 45.0%
! AATTTTGCGTGCTCCAGAAG+TGG - chr5_4:9347203-9347222 Msa0835970:intron 45.0%
CACAATCCTGTTCCATCACA+AGG + chr5_4:9347496-9347515 None:intergenic 45.0%
GTGAGAAAAGAGAAGCTGGA+TGG - chr5_4:9347513-9347532 Msa0835970:CDS 45.0%
!! GAAATGGATCGGTGCTGTTT+CGG - chr5_4:9347602-9347621 Msa0835970:CDS 45.0%
CAGCTGCATCAACAGAATGA+AGG + chr5_4:9347638-9347657 None:intergenic 45.0%
ATGTTGACGATAAGCCAGAG+TGG - chr5_4:9347880-9347899 Msa0835970:CDS 45.0%
!! CGATAAGCCAGAGTGGATTA+AGG - chr5_4:9347887-9347906 Msa0835970:CDS 45.0%
AAGGATCTTGATGCAGTGGA+TGG - chr5_4:9347906-9347925 Msa0835970:CDS 45.0%
AGGATCTTGATGCAGTGGAT+GGG - chr5_4:9347907-9347926 Msa0835970:CDS 45.0%
GTACTCTTGAGCAAAGACAG+TGG + chr5_4:9347954-9347973 None:intergenic 45.0%
!! TTTGCTCAAGAGTACCTCTG+TGG - chr5_4:9347959-9347978 Msa0835970:CDS 45.0%
GCAACCACCAAAGCAAAACA+TGG + chr5_4:9348010-9348029 None:intergenic 45.0%
!! TGTTTTGCTTTGGTGGTTGC+GGG - chr5_4:9348010-9348029 Msa0835970:intron 45.0%
!!! TTGGCTTTGAGCTTTTGGGT+GGG + chr5_4:9348214-9348233 None:intergenic 45.0%
!!! TTTGGCTTTGAGCTTTTGGG+TGG + chr5_4:9348215-9348234 None:intergenic 45.0%
! TAGCTGCATGCACTGATACT+TGG - chr5_4:9348383-9348402 Msa0835970:intron 45.0%
! AGCTGCATGCACTGATACTT+GGG - chr5_4:9348384-9348403 Msa0835970:intron 45.0%
!! TTTCTGGAGTTAGGTGCTAC+TGG + chr5_4:9348795-9348814 None:intergenic 45.0%
AAATCCAAGCTGTACCCAGA+AGG + chr5_4:9348914-9348933 None:intergenic 45.0%
TTATGTCTGAGAATGGGGGA+AGG - chr5_4:9348973-9348992 Msa0835970:CDS 45.0%
TATGTCTGAGAATGGGGGAA+GGG - chr5_4:9348974-9348993 Msa0835970:CDS 45.0%
TAATTGTAGAAGTAGGGCCC+TGG + chr5_4:9349003-9349022 None:intergenic 45.0%
TCATTAGATGGGAGTTCAGG+AGG + chr5_4:9349316-9349335 None:intergenic 45.0%
TCTCTTACTTCTACTGCGTC+TGG + chr5_4:9349413-9349432 None:intergenic 45.0%
CACCAAAGTGATTGGTGTAC+AGG - chr5_4:9349441-9349460 Msa0835970:CDS 45.0%
GACCTGTACACCAATCACTT+TGG + chr5_4:9349446-9349465 None:intergenic 45.0%
AGGAGAAGCTGATGTCTTCT+TGG - chr5_4:9349576-9349595 Msa0835970:CDS 45.0%
AGACACGAATGCACATATGC+TGG + chr5_4:9349637-9349656 None:intergenic 45.0%
GGGCACCTCCAAGAAAAATA+AGG + chr5_4:9349696-9349715 None:intergenic 45.0%
!! AATAAAAATAAAAAAAAAAG+GGG + chr5_4:9347429-9347448 None:intergenic 5.0%
! GGAGAAGAAGATGGTGGTGT+TGG + chr5_4:9345683-9345702 None:intergenic 50.0%
CGTAGAGCAAACAGCTTCAG+AGG - chr5_4:9345882-9345901 Msa0835970:three_prime_UTR 50.0%
! AGTCACCGGCGACAATTTTC+TGG - chr5_4:9345937-9345956 Msa0835970:three_prime_UTR 50.0%
AAAATCGGAAGCCGAGAACG+AGG + chr5_4:9345995-9346014 None:intergenic 50.0%
AACAAACGGGAGTTCGGTAG+TGG - chr5_4:9346133-9346152 Msa0835970:CDS 50.0%
TGGATTGTGGTTGAAGCTGG+TGG - chr5_4:9346398-9346417 Msa0835970:intron 50.0%
GAAAATGCCCAGTTTGTGGG+AGG - chr5_4:9346490-9346509 Msa0835970:intron 50.0%
TGAGGAAACCATGCCAATGC+CGG - chr5_4:9347689-9347708 Msa0835970:CDS 50.0%
TTACAAGCAGGACCTTGCAC+CGG + chr5_4:9347711-9347730 None:intergenic 50.0%
GTGCAAGGTCCTGCTTGTAA+TGG - chr5_4:9347711-9347730 Msa0835970:CDS 50.0%
!! GTACTGATAAGTTGGTCGGG+TGG - chr5_4:9347733-9347752 Msa0835970:CDS 50.0%
GGATCTTGATGCAGTGGATG+GGG - chr5_4:9347908-9347927 Msa0835970:CDS 50.0%
ACCTCTGTGGTAGAACCACT+AGG - chr5_4:9347972-9347991 Msa0835970:intron 50.0%
CCTCTGTGGTAGAACCACTA+GGG - chr5_4:9347973-9347992 Msa0835970:intron 50.0%
GTAGAACCACTAGGGAGTTG+TGG - chr5_4:9347981-9348000 Msa0835970:intron 50.0%
! GTGGACGCCATGTTTTGCTT+TGG - chr5_4:9348000-9348019 Msa0835970:intron 50.0%
! GACGCCATGTTTTGCTTTGG+TGG - chr5_4:9348003-9348022 Msa0835970:intron 50.0%
CAGACAGCAAATTCCCTGCT+CGG - chr5_4:9348045-9348064 Msa0835970:intron 50.0%
!! CTTTGAGCTTTTGGGTGGGT+TGG + chr5_4:9348210-9348229 None:intergenic 50.0%
! GTGACTAGAGGCCTTGTAGT+GGG + chr5_4:9348469-9348488 None:intergenic 50.0%
! TGTGACTAGAGGCCTTGTAG+TGG + chr5_4:9348470-9348489 None:intergenic 50.0%
! GATTTCCCAGGGGTATGTTC+TGG - chr5_4:9348888-9348907 Msa0835970:intron 50.0%
ATGTCTGAGAATGGGGGAAG+GGG - chr5_4:9348975-9348994 Msa0835970:CDS 50.0%
CGGGTTGTCCAAATAGTGCA+TGG - chr5_4:9349135-9349154 Msa0835970:CDS 50.0%
ATGGGTGATTGACCCTCCTT+TGG - chr5_4:9349249-9349268 Msa0835970:CDS 50.0%
GGACTGTGATGTCCAAAGGA+GGG + chr5_4:9349264-9349283 None:intergenic 50.0%
GATGGGACTGTGATGTCCAA+AGG + chr5_4:9349268-9349287 None:intergenic 50.0%
CTTCTACTGCGTCTGGATCT+GGG + chr5_4:9349406-9349425 None:intergenic 50.0%
ACTTCTACTGCGTCTGGATC+TGG + chr5_4:9349407-9349426 None:intergenic 50.0%
! TTGCAACGTTGGCTGTCTTG+TGG - chr5_4:9349761-9349780 Msa0835970:five_prime_UTR 50.0%
! TGCAACGTTGGCTGTCTTGT+GGG - chr5_4:9349762-9349781 Msa0835970:five_prime_UTR 50.0%
TACACCGTTCCGTTCACCTC+CGG - chr5_4:9346062-9346081 Msa0835970:CDS 55.0%
! TTCGGTAGTGGCGAGTAGAG+TGG - chr5_4:9346145-9346164 Msa0835970:CDS 55.0%
TGGCGAGTAGAGTGGTGGTT+GGG - chr5_4:9346153-9346172 Msa0835970:CDS 55.0%
AGAGTGGTGGTTGGGAGACA+CGG - chr5_4:9346161-9346180 Msa0835970:CDS 55.0%
ACTTCCACAGGATCCGGATG+CGG + chr5_4:9346206-9346225 None:intergenic 55.0%
!! TGGATCGGTGCTGTTTCGGT+TGG - chr5_4:9347606-9347625 Msa0835970:CDS 55.0%
CTTGATGCAGTGGATGGGGA+TGG - chr5_4:9347912-9347931 Msa0835970:CDS 55.0%
! CCCTAGTGGTTCTACCACAG+AGG + chr5_4:9347976-9347995 None:intergenic 55.0%
GAAGGCCAGAACATACCCCT+GGG + chr5_4:9348896-9348915 None:intergenic 55.0%
AGAAGGCCAGAACATACCCC+TGG + chr5_4:9348897-9348916 None:intergenic 55.0%
! AGGGGTATGTTCTGGCCTTC+TGG - chr5_4:9348896-9348915 Msa0835970:intron 55.0%
! GGGGTATGTTCTGGCCTTCT+GGG - chr5_4:9348897-9348916 Msa0835970:intron 55.0%
GGGACTGTGATGTCCAAAGG+AGG + chr5_4:9349265-9349284 None:intergenic 55.0%
TCCCATCGAAACGCACTCCA+TGG - chr5_4:9349281-9349300 Msa0835970:CDS 55.0%
GCCATGGAGTGCGTTTCGAT+GGG + chr5_4:9349285-9349304 None:intergenic 55.0%
CGGAACAGTAATTCCGGCGC+CGG + chr5_4:9346090-9346109 None:intergenic 60.0%
! CGGCGCCGGAATTACTGTTC+CGG - chr5_4:9346088-9346107 Msa0835970:CDS 60.0%
CGCCGGAATTACTGTTCCGG+TGG - chr5_4:9346091-9346110 Msa0835970:CDS 60.0%
! GGTAGTGGCGAGTAGAGTGG+TGG - chr5_4:9346148-9346167 Msa0835970:CDS 60.0%
GTGGCGAGTAGAGTGGTGGT+TGG - chr5_4:9346152-9346171 Msa0835970:CDS 60.0%
GAGTGGTGGTTGGGAGACAC+GGG - chr5_4:9346162-9346181 Msa0835970:CDS 60.0%
TGGTTGGGAGACACGGGATC+CGG - chr5_4:9346168-9346187 Msa0835970:CDS 60.0%
GGAGACACGGGATCCGGATT+CGG - chr5_4:9346174-9346193 Msa0835970:CDS 60.0%
ACCATGCCAATGCCGGTGCA+AGG - chr5_4:9347696-9347715 Msa0835970:CDS 60.0%
!! ACCTTGCACCGGCATTGGCA+TGG + chr5_4:9347700-9347719 None:intergenic 60.0%
TTGTCGGCAACACTGGTGCC+CGG + chr5_4:9347812-9347831 None:intergenic 60.0%
TGGCGTCCACAACTCCCTAG+TGG + chr5_4:9347990-9348009 None:intergenic 60.0%
!!! GCTTTTGGGTGGGTTGGCGT+TGG + chr5_4:9348204-9348223 None:intergenic 60.0%
! CTGGCCTTCTGGGTACAGCT+TGG - chr5_4:9348907-9348926 Msa0835970:intron 60.0%
GGCCATGGAGTGCGTTTCGA+TGG + chr5_4:9349286-9349305 None:intergenic 60.0%
TCAGGAGGAGAGTCTGGCCA+TGG + chr5_4:9349301-9349320 None:intergenic 60.0%
GGGAGTTCAGGAGGAGAGTC+TGG + chr5_4:9349307-9349326 None:intergenic 60.0%
! GGTGCCGGAGGTGAACGGAA+CGG + chr5_4:9346069-9346088 None:intergenic 65.0%
GTTCCGTTCACCTCCGGCAC+CGG - chr5_4:9346068-9346087 Msa0835970:CDS 65.0%
!! AGTAATTCCGGCGCCGGTGC+CGG + chr5_4:9346084-9346103 None:intergenic 65.0%
ACGGGATCCGGATTCGGCCA+TGG - chr5_4:9346180-9346199 Msa0835970:CDS 65.0%
GATGCGGCCATGGCCGAATC+CGG + chr5_4:9346190-9346209 None:intergenic 65.0%
GATTCGGCCATGGCCGCATC+CGG - chr5_4:9346190-9346209 Msa0835970:CDS 65.0%
ACAGGATCCGGATGCGGCCA+TGG + chr5_4:9346200-9346219 None:intergenic 65.0%
ATGGCCGCATCCGGATCCTG+TGG - chr5_4:9346199-9346218 Msa0835970:CDS 65.0%
! GCAGGACCTTGCACCGGCAT+TGG + chr5_4:9347705-9347724 None:intergenic 65.0%
GTGGAGGGACTCACCGAGCA+GGG + chr5_4:9348061-9348080 None:intergenic 65.0%
!! AGAATGGGGGAAGGGGTGCC+AGG - chr5_4:9348982-9349001 Msa0835970:CDS 65.0%
!! GAATGGGGGAAGGGGTGCCA+GGG - chr5_4:9348983-9349002 Msa0835970:CDS 65.0%
CGCCGGCGCCGTTAAGTCAC+CGG - chr5_4:9345923-9345942 Msa0835970:three_prime_UTR 70.0%
CGCCGGTGACTTAACGGCGC+CGG + chr5_4:9345928-9345947 None:intergenic 70.0%
GGTGGAGGGACTCACCGAGC+AGG + chr5_4:9348062-9348081 None:intergenic 70.0%
! GCGCCGGTGCCGGAGGTGAA+CGG + chr5_4:9346074-9346093 None:intergenic 75.0%
!! TTCACCTCCGGCACCGGCGC+CGG - chr5_4:9346074-9346093 Msa0835970:CDS 75.0%
!! AATTCCGGCGCCGGTGCCGG+AGG + chr5_4:9346081-9346100 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 9345652 9349839 9345652 ID=Msa0835970;Name=Msa0835970
chr5_4 mRNA 9345652 9349839 9345652 ID=Msa0835970-mRNA-1;Parent=Msa0835970;Name=Msa0835970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=194|1|1|1|1|1|3|344|504
chr5_4 exon 9345652 9346242 9345652 ID=Msa0835970-mRNA-1:exon:4098;Parent=Msa0835970-mRNA-1
chr5_4 exon 9347425 9347982 9347425 ID=Msa0835970-mRNA-1:exon:4097;Parent=Msa0835970-mRNA-1
chr5_4 exon 9348936 9349839 9348936 ID=Msa0835970-mRNA-1:exon:4096;Parent=Msa0835970-mRNA-1
chr5_4 five_prime_UTR 9349646 9349839 9349646 ID=Msa0835970-mRNA-1:five_prime_utr;Parent=Msa0835970-mRNA-1
chr5_4 CDS 9348936 9349645 9348936 ID=Msa0835970-mRNA-1:cds;Parent=Msa0835970-mRNA-1
chr5_4 CDS 9347425 9347982 9347425 ID=Msa0835970-mRNA-1:cds;Parent=Msa0835970-mRNA-1
chr5_4 CDS 9345996 9346242 9345996 ID=Msa0835970-mRNA-1:cds;Parent=Msa0835970-mRNA-1
chr5_4 three_prime_UTR 9345652 9345995 9345652 ID=Msa0835970-mRNA-1:three_prime_utr;Parent=Msa0835970-mRNA-1
Gene Sequence

>Msa0835970

ATGAAGCTCTCAACATTACAACAAAGTTACATCAACCGTAGAGCAAACAGCTTCAGAGGTTTAGATTCAGATAACGGCGCCGGCGCCGTTAAGTCACCGGCGACAATTTTCTGGCTAGTACTTCACGGCGTTTGCTGCTTAATCAGCCTCGTTCTCGGCTTCCGATTTTCTCGTCTTGTTTTCTTCTTCCTCTTTTCAACTTCATCCACTAATATTTACACCGTTCCGTTCACCTCCGGCACCGGCGCCGGAATTACTGTTCCGGTGGAAACTCAACAGAATGTTCTAACAAACGGGAGTTCGGTAGTGGCGAGTAGAGTGGTGGTTGGGAGACACGGGATCCGGATTCGGCCATGGCCGCATCCGGATCCTGTGGAAGTAATGAAAGCGCATGGAATAATCTCTAGAGTTCAAAATGAACAGAGATTGTTGTTTGGAGTGAAGAACCCTAGAAAAGTGATTGTTGTGACACCAACGTATGTGAGGACTTTTCAAGCGATGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTACCGTATGATCTGACTTGGATTGTGGTTGAAGCTGGTGGTGTTACTAATGAGACTGCTTCAATTATTGGAAAATCTGGATTAAGGATTATTCATGTTGGGTTTAATCAGAAAATGCCCAGTTTGTGGGAGGATAGACATAAAGTTGAATCTTTGATGCGTCTTCATGCTTTAAGGATTGTGAGAAAAGAGAAGCTGGATGGAATTGTGATGTTTGCTGATGATAGTAATATGCATAATATGGAGCTGTTTGATGAAATTCAGAGTGTGAAATGGATCGGTGCTGTTTCGGTTGGAATACTCCTTCATTCTGTTGATGCAGCTGAAATTTCTTCATTGGTTCAAAAAGAAGGAGATGAGGAAACCATGCCAATGCCGGTGCAAGGTCCTGCTTGTAATGGTACTGATAAGTTGGTCGGGTGGCACACCTTCAATTCATTACGATATACGGGAAGGCGTGCAGTTTACATTGATGACCGGGCACCAGTGTTGCCGACAAAATTTGAATGGTCTGGGTTTGTGTTGAATTCCAGATTACTTTGGAAGGATGTTGACGATAAGCCAGAGTGGATTAAGGATCTTGATGCAGTGGATGGGGATGGTGAGAAGATAGAGAGTCCACTGTCTTTGCTCAAGAGTACCTCTGTGGTAGAACCACTAGGGAGTTGTGGACGCCATGTTTTGCTTTGGTGGTTGCGGGTTGAAGCTCGCACAGACAGCAAATTCCCTGCTCGATGGGTGATTGACCCTCCTTTGGACATCACAGTCCCATCGAAACGCACTCCATGGCCAGACTCTCCTCCTGAACTCCCATCTAATGAAAATGAAAAAGTGTTCGCTGCAGGCACAGAAGAGCATTCGAACACGCACACTACAAAGACTAAAACACCCAGATCCAGACGCAGTAGAAGTAAGAGAAAGCATGACACCAAAGTGATTGGTGTACAGGTCTCTACACATTCTGAACAAACCGAGATATGA

Protein sequence

>Msa0835970

MKLSTLQQSYINRRANSFRGLDSDNGAGAVKSPATIFWLVLHGVCCLISLVLGFRFSRLVFFFLFSTSSTNIYTVPFTSGTGAGITVPVETQQNVLTNGSSVVASRVVVGRHGIRIRPWPHPDPVEVMKAHGIISRVQNEQRLLFGVKNPRKVIVVTPTYVRTFQAMHLTGVMHSLMLVPYDLTWIVVEAGGVTNETASIIGKSGLRIIHVGFNQKMPSLWEDRHKVESLMRLHALRIVRKEKLDGIVMFADDSNMHNMELFDEIQSVKWIGAVSVGILLHSVDAAEISSLVQKEGDEETMPMPVQGPACNGTDKLVGWHTFNSLRYTGRRAVYIDDRAPVLPTKFEWSGFVLNSRLLWKDVDDKPEWIKDLDAVDGDGEKIESPLSLLKSTSVVEPLGSCGRHVLLWWLRVEARTDSKFPARWVIDPPLDITVPSKRTPWPDSPPELPSNENEKVFAAGTEEHSNTHTTKTKTPRSRRSRSKRKHDTKVIGVQVSTHSEQTEI*