AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861800 MtrunA17_Chr5g0442741 92.093 215 17 0 1 215 1 215 2.15e-148 411
Msa0861800 MtrunA17_Chr5g0442751 89.352 216 23 0 1 216 1 216 2.20e-145 404
Msa0861800 MtrunA17_Chr3g0095781 69.585 217 63 2 1 216 1 215 1.29e-109 313
Msa0861800 MtrunA17_Chr3g0095821 71.176 170 46 2 47 215 1 168 1.33e-86 253
Msa0861800 MtrunA17_Chr3g0109891 53.241 216 95 4 1 213 1 213 9.03e-77 229
Msa0861800 MtrunA17_Chr1g0157211 42.922 219 118 4 3 215 5 222 4.84e-57 180
Msa0861800 MtrunA17_Chr1g0195811 42.925 212 116 4 2 211 3 211 6.40e-56 177
Msa0861800 MtrunA17_Chr1g0195831 43.128 211 116 4 1 209 1 209 1.09e-54 174
Msa0861800 MtrunA17_Chr1g0195821 42.925 212 116 4 2 211 3 211 2.36e-52 167
Msa0861800 MtrunA17_Chr1g0189001 80.000 40 8 0 167 206 1 40 4.07e-17 72.0
Msa0861800 MtrunA17_Chr3g0095811 66.667 48 16 0 1 48 1 48 2.38e-15 68.2
Msa0861800 MtrunA17_Chr1g0198101 46.970 66 34 1 146 211 1 65 1.66e-14 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861800 AT2G30860.1 62.212 217 79 2 1 216 1 215 2.38e-100 290
Msa0861800 AT2G30870.1 58.525 217 87 2 1 216 1 215 8.38e-90 263
Msa0861800 AT3G03190.1 48.826 213 105 3 1 211 1 211 4.94e-69 210
Msa0861800 AT2G30860.2 61.290 155 57 2 1 154 1 153 9.93e-66 200
Msa0861800 AT5G17220.1 45.755 212 113 2 1 211 1 211 2.86e-64 198
Msa0861800 AT3G62760.1 45.714 210 110 4 1 208 1 208 9.13e-60 187
Msa0861800 AT2G47730.2 41.706 211 119 4 5 213 54 262 2.67e-55 177
Msa0861800 AT2G47730.1 41.706 211 119 4 5 213 54 262 2.67e-55 177
Msa0861800 AT1G02930.2 41.827 208 117 4 3 209 4 208 1.18e-50 163
Msa0861800 AT1G02930.1 41.827 208 117 4 3 209 4 208 1.18e-50 163
Msa0861800 AT2G02930.1 42.180 211 116 4 3 209 4 212 1.63e-50 163
Msa0861800 AT4G02520.1 40.952 210 118 4 3 208 4 211 3.34e-50 162
Msa0861800 AT1G02920.1 42.308 208 117 3 3 209 4 209 7.04e-50 161
Msa0861800 AT1G02950.2 40.686 204 117 4 4 205 28 229 5.18e-46 153
Msa0861800 AT1G02950.3 40.686 204 117 4 4 205 26 227 5.64e-46 152
Msa0861800 AT1G02950.1 40.686 204 117 4 4 205 26 227 5.64e-46 152
Msa0861800 AT1G02940.4 38.571 210 125 4 4 211 40 247 5.89e-46 153
Msa0861800 AT1G02940.1 38.571 210 125 4 4 211 40 247 5.89e-46 153
Msa0861800 AT1G02950.5 40.686 204 117 4 4 205 38 239 7.51e-46 152
Msa0861800 AT1G02940.3 38.571 210 125 4 4 211 53 260 7.59e-46 153
Msa0861800 AT1G02940.2 38.571 210 125 4 4 211 65 272 8.66e-46 153
Msa0861800 AT1G49860.1 40.097 207 117 4 9 209 9 214 1.52e-43 147
Msa0861800 AT1G02950.4 38.194 144 86 3 63 205 60 201 1.38e-25 99.4
Msa0861800 AT2G02390.2 31.633 98 65 1 11 108 18 113 2.57e-11 60.8
Msa0861800 AT2G02390.1 31.633 98 65 1 11 108 18 113 3.20e-11 61.2

Find 87 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAGTCACCTTCCATTTA+TGG 0.066681 5_4:+61227620 Msa0861800:CDS
GATGGAGACTATACCCTTTA+TGG 0.175031 5_4:+61226912 Msa0861800:CDS
GGATTACGTTGTTAACAATA+TGG 0.214666 5_4:+61227641 Msa0861800:CDS
TCACCCTCCAAGACATTAAT+AGG 0.249295 5_4:-61226712 None:intergenic
TAGTTTAGTTGTGTTGAATT+TGG 0.271235 5_4:+61228056 Msa0861800:three_prime_UTR
GTTCACAATCTGCAGCCTTT+TGG 0.299664 5_4:+61226870 Msa0861800:intron
ACAACTAAACTAAAACTAAA+AGG 0.303280 5_4:-61228045 None:intergenic
TCACTCTCTTCAATCACCTT+TGG 0.309741 5_4:-61227510 None:intergenic
TTAACAACGTAATCCATAAA+TGG 0.311970 5_4:-61227633 None:intergenic
AGTTTAGTTGTGTTGAATTT+GGG 0.319765 5_4:+61228057 Msa0861800:three_prime_UTR
GCTATCAAAGAGCAAGTATT+TGG 0.324415 5_4:+61227572 Msa0861800:CDS
GGGGAAGGATTATTTGATAA+AGG 0.330935 5_4:+61227662 Msa0861800:CDS
TGGTAAATGTTACACTTTAG+AGG 0.340766 5_4:+61227835 Msa0861800:three_prime_UTR
TCTTCAATCACCTTTGGATC+TGG 0.357222 5_4:-61227504 None:intergenic
AAGATACACTTCACTTAAGT+TGG 0.360751 5_4:-61227765 None:intergenic
TGAGAAGAAAATCGAATTTG+AGG 0.392525 5_4:+61226684 Msa0861800:CDS
GGTTGTCCCTATTAATGTCT+TGG 0.396323 5_4:+61226705 Msa0861800:CDS
ACCTGAGTACCTCAAATTAC+AGG 0.397815 5_4:+61226744 Msa0861800:CDS
AATGCTTAAACAAGAGATAA+GGG 0.400123 5_4:-61226582 None:intergenic
ACTGTTCCTGTTATTAAAGA+TGG 0.400215 5_4:+61226894 Msa0861800:CDS
TTGATCGGTGGGAATCTTGC+TGG 0.401278 5_4:-61226506 None:intergenic
CATCTATTTGTGCAGAGTCT+CGG 0.401539 5_4:+61227301 Msa0861800:intron
ATCTATTTGTGCAGAGTCTC+GGG 0.405511 5_4:+61227302 Msa0861800:intron
TAGTCTCCATCTTTAATAAC+AGG 0.407930 5_4:-61226900 None:intergenic
GATTACGTTGTTAACAATAT+GGG 0.426681 5_4:+61227642 Msa0861800:CDS
AGGAAAGACAATAGAAGAAA+GGG 0.428460 5_4:+61227377 Msa0861800:CDS
ACACCTTCACTACCATGGTT+TGG 0.430225 5_4:-61226615 None:intergenic
TGAAGAGAGTGAAGCAAAGT+TGG 0.434591 5_4:+61227521 Msa0861800:CDS
AGGATAGAAGTAACAAATAG+TGG 0.435542 5_4:-61228025 None:intergenic
TCTCAAGGGGTTGAGTTACT+AGG 0.455527 5_4:+61227357 Msa0861800:CDS
GTGAATTAACCTGTAATTTG+AGG 0.477315 5_4:-61226753 None:intergenic
AAATGCTTAAACAAGAGATA+AGG 0.478373 5_4:-61226583 None:intergenic
TGTCCCTATTAATGTCTTGG+AGG 0.483266 5_4:+61226708 Msa0861800:CDS
ACCTGTAATTTGAGGTACTC+AGG 0.483901 5_4:-61226745 None:intergenic
TGCCTCAGCCAAACGTGTGC+TGG 0.487135 5_4:+61226651 Msa0861800:CDS
TAGGAAAGACAATAGAAGAA+AGG 0.489516 5_4:+61227376 Msa0861800:CDS
GTGCCGTCAGCTAGTAGTGC+AGG 0.501569 5_4:-61227480 None:intergenic
ACGTTTGGCTGAGGCACAGT+GGG 0.504539 5_4:-61226644 None:intergenic
TCAAGAACTTTGTTCCATGA+TGG 0.514235 5_4:-61227729 None:intergenic
AGGATTATTTGATAAAGGAT+AGG 0.514814 5_4:+61227667 Msa0861800:CDS
CACCCTCCAAGACATTAATA+GGG 0.516622 5_4:-61226711 None:intergenic
AAGACAAACCAGCACACGTT+TGG 0.517164 5_4:-61226659 None:intergenic
ATACACTTCACTTAAGTTGG+AGG 0.517811 5_4:-61227762 None:intergenic
TGATCGGTGGGAATCTTGCT+GGG 0.520663 5_4:-61226505 None:intergenic
GGAAGTCTGTTAGTGCTTGG+TGG 0.524786 5_4:+61227688 Msa0861800:CDS
GTCCCTATTAATGTCTTGGA+GGG 0.525222 5_4:+61226709 Msa0861800:CDS
ATAACAGGAACAGTTCCAAA+AGG 0.526229 5_4:-61226885 None:intergenic
CGTTGTTAACAATATGGGGA+AGG 0.527650 5_4:+61227647 Msa0861800:CDS
ACCATGGTAGTGAAGGTGTA+TGG 0.535696 5_4:+61226619 Msa0861800:exon
GAAGAGAGTGAAGCAAAGTT+GGG 0.538644 5_4:+61227522 Msa0861800:CDS
CACTACTGAGGTTGATCGGT+GGG 0.542828 5_4:-61226517 None:intergenic
TCAAAGAGCAAGTATTTGGC+TGG 0.546465 5_4:+61227576 Msa0861800:CDS
CAGGTCAAATTGTATGCTGA+TGG 0.554286 5_4:-61227444 None:intergenic
AATAGAAGAAAGGGGTCTTG+TGG 0.555254 5_4:+61227386 Msa0861800:CDS
TGCAGGAAACAAACAATGAC+AGG 0.556705 5_4:-61227463 None:intergenic
ATAGGAAGTCTGTTAGTGCT+TGG 0.558070 5_4:+61227685 Msa0861800:CDS
AATAATTTAAAGAATAAATG+TGG 0.564414 5_4:+61227932 Msa0861800:three_prime_UTR
TTTCCTGCACTACTAGCTGA+CGG 0.566461 5_4:+61227477 Msa0861800:CDS
AAACCAAACCATGGTAGTGA+AGG 0.577644 5_4:+61226612 Msa0861800:exon
TGTTGAACATTTATGAAGAG+AGG 0.582845 5_4:+61227550 Msa0861800:CDS
TAGTCACTACTGAGGTTGAT+CGG 0.583590 5_4:-61226521 None:intergenic
ATTACGTTGTTAACAATATG+GGG 0.584797 5_4:+61227643 Msa0861800:CDS
AACCAGCACACGTTTGGCTG+AGG 0.587059 5_4:-61226653 None:intergenic
CAACGTAATCCATAAATGGA+AGG 0.591331 5_4:-61227629 None:intergenic
TCTTGCTGGGACTCCACGTA+GGG 0.594461 5_4:-61226492 None:intergenic
ACCATACACCTTCACTACCA+TGG 0.604095 5_4:-61226620 None:intergenic
CTTTAGAGGTTAACAAATCG+TGG 0.614135 5_4:+61227849 Msa0861800:three_prime_UTR
GAGTGAAGCAAAGTTGGGCA+AGG 0.616935 5_4:+61227527 Msa0861800:CDS
AAAGGGGTCTTGTGGAACAA+TGG 0.625869 5_4:+61227394 Msa0861800:CDS
CACGTTTGGCTGAGGCACAG+TGG 0.626355 5_4:-61226645 None:intergenic
TGACGGCACTCCAGATCCAA+AGG 0.632803 5_4:+61227494 Msa0861800:CDS
ATGCTTAAACAAGAGATAAG+GGG 0.636485 5_4:-61226581 None:intergenic
TCACCGCTTCTTGCCCTACG+TGG 0.637143 5_4:+61226479 Msa0861800:five_prime_UTR
ATATAAGTAGTAGACCATCA+TGG 0.637766 5_4:+61227715 Msa0861800:CDS
TGTAACATTTACCACAATCG+TGG 0.645193 5_4:-61227826 None:intergenic
GGAAAGACAATAGAAGAAAG+GGG 0.656416 5_4:+61227378 Msa0861800:CDS
ACTCCACGTAGGGCAAGAAG+CGG 0.656720 5_4:-61226482 None:intergenic
AGGTCAAATTGTATGCTGAT+GGG 0.663491 5_4:-61227443 None:intergenic
CAAGTGAGTAACCACGATTG+TGG 0.671223 5_4:+61227815 Msa0861800:three_prime_UTR
ATCTTGCTGGGACTCCACGT+AGG 0.674770 5_4:-61226493 None:intergenic
TCAAATTGTATGCTGATGGG+TGG 0.678075 5_4:-61227440 None:intergenic
AATGAAGTGAACTAACCAAG+AGG 0.680245 5_4:+61226548 Msa0861800:five_prime_UTR
TTTCAATAGAAACCAAACCA+TGG 0.682075 5_4:+61226603 Msa0861800:exon
GAAGGTGACTCATATCAGCA+AGG 0.682286 5_4:-61227611 None:intergenic
TCACTACTGAGGTTGATCGG+TGG 0.687288 5_4:-61226518 None:intergenic
CATTCTTATAGTCACTACTG+AGG 0.709369 5_4:-61226529 None:intergenic
CGTTTGGCTGAGGCACAGTG+GGG 0.742956 5_4:-61226643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAAAAAATAATTTTAAA+AGG + chr5_4:61227190-61227209 Msa0861800:intron 0.0%
!!! TATAAAAAAATAATTTTAAA+AGG + chr5_4:61227190-61227209 Msa0861800:intron 0.0%
!! AATAATTTAAAGAATAAATG+TGG + chr5_4:61227932-61227951 Msa0861800:three_prime_UTR 10.0%
!! AATAATTTAAAGAATAAATG+TGG + chr5_4:61227932-61227951 Msa0861800:three_prime_UTR 10.0%
!!! TGTGATTTTATTAAACTTAT+CGG + chr5_4:61227878-61227897 Msa0861800:three_prime_UTR 15.0%
!!! TGTGATTTTATTAAACTTAT+CGG + chr5_4:61227878-61227897 Msa0861800:three_prime_UTR 15.0%
!!! ACTTTTTAGCATATTAAACA+AGG - chr5_4:61226799-61226818 None:intergenic 20.0%
!! TCTTATCTACATATTTGATA+TGG + chr5_4:61226983-61227002 Msa0861800:intron 20.0%
!! AAACATATAACCAATAGTAT+TGG - chr5_4:61227145-61227164 None:intergenic 20.0%
!! TTGGTTATATGTTTAAATCT+TGG + chr5_4:61227151-61227170 Msa0861800:intron 20.0%
!!! TTTATTTTAAAGAAGGAAGA+TGG + chr5_4:61227991-61228010 Msa0861800:three_prime_UTR 20.0%
!! ACAACTAAACTAAAACTAAA+AGG - chr5_4:61228048-61228067 None:intergenic 20.0%
!!! ACTTTTTAGCATATTAAACA+AGG - chr5_4:61226799-61226818 None:intergenic 20.0%
!! TCTTATCTACATATTTGATA+TGG + chr5_4:61226983-61227002 Msa0861800:intron 20.0%
!! AAACATATAACCAATAGTAT+TGG - chr5_4:61227145-61227164 None:intergenic 20.0%
!! TTGGTTATATGTTTAAATCT+TGG + chr5_4:61227151-61227170 Msa0861800:intron 20.0%
!!! TTTATTTTAAAGAAGGAAGA+TGG + chr5_4:61227991-61228010 Msa0861800:three_prime_UTR 20.0%
!! ACAACTAAACTAAAACTAAA+AGG - chr5_4:61228048-61228067 None:intergenic 20.0%
! AATGCTTAAACAAGAGATAA+GGG - chr5_4:61226585-61226604 None:intergenic 25.0%
! AAATGCTTAAACAAGAGATA+AGG - chr5_4:61226586-61226605 None:intergenic 25.0%
!!! CAAGATGTTTTAACCATAAA+GGG - chr5_4:61226928-61226947 None:intergenic 25.0%
!!! TCAAGATGTTTTAACCATAA+AGG - chr5_4:61226929-61226948 None:intergenic 25.0%
!!! GGTTTTATGTCTCAAAATTT+TGG + chr5_4:61227035-61227054 Msa0861800:intron 25.0%
!!! AAGACCTCAATTTTTTTTTG+AGG + chr5_4:61227066-61227085 Msa0861800:intron 25.0%
!!! AGACCTCAATTTTTTTTTGA+GGG + chr5_4:61227067-61227086 Msa0861800:intron 25.0%
! TCAACAAGATAATACACTAA+TGG - chr5_4:61227269-61227288 None:intergenic 25.0%
! CTGAAAAATATAGATCTCAA+GGG + chr5_4:61227343-61227362 Msa0861800:CDS 25.0%
! TGAAAAATATAGATCTCAAG+GGG + chr5_4:61227344-61227363 Msa0861800:CDS 25.0%
! TTAACAACGTAATCCATAAA+TGG - chr5_4:61227636-61227655 None:intergenic 25.0%
! GATTACGTTGTTAACAATAT+GGG + chr5_4:61227642-61227661 Msa0861800:CDS 25.0%
! ATTACGTTGTTAACAATATG+GGG + chr5_4:61227643-61227662 Msa0861800:CDS 25.0%
! AGGATTATTTGATAAAGGAT+AGG + chr5_4:61227667-61227686 Msa0861800:CDS 25.0%
!!! CAAACATACACTTAGTTTTT+AGG + chr5_4:61227906-61227925 Msa0861800:three_prime_UTR 25.0%
!!! TCTAAAAAGTTCTAAGAAGA+TGG + chr5_4:61227956-61227975 Msa0861800:three_prime_UTR 25.0%
! TAGTTTAGTTGTGTTGAATT+TGG + chr5_4:61228056-61228075 Msa0861800:three_prime_UTR 25.0%
! AGTTTAGTTGTGTTGAATTT+GGG + chr5_4:61228057-61228076 Msa0861800:three_prime_UTR 25.0%
! AATGCTTAAACAAGAGATAA+GGG - chr5_4:61226585-61226604 None:intergenic 25.0%
! AAATGCTTAAACAAGAGATA+AGG - chr5_4:61226586-61226605 None:intergenic 25.0%
!!! CAAGATGTTTTAACCATAAA+GGG - chr5_4:61226928-61226947 None:intergenic 25.0%
!!! TCAAGATGTTTTAACCATAA+AGG - chr5_4:61226929-61226948 None:intergenic 25.0%
!!! GGTTTTATGTCTCAAAATTT+TGG + chr5_4:61227035-61227054 Msa0861800:intron 25.0%
!!! AAGACCTCAATTTTTTTTTG+AGG + chr5_4:61227066-61227085 Msa0861800:intron 25.0%
!!! AGACCTCAATTTTTTTTTGA+GGG + chr5_4:61227067-61227086 Msa0861800:intron 25.0%
! TCAACAAGATAATACACTAA+TGG - chr5_4:61227269-61227288 None:intergenic 25.0%
! CTGAAAAATATAGATCTCAA+GGG + chr5_4:61227343-61227362 Msa0861800:CDS 25.0%
! TGAAAAATATAGATCTCAAG+GGG + chr5_4:61227344-61227363 Msa0861800:CDS 25.0%
! TTAACAACGTAATCCATAAA+TGG - chr5_4:61227636-61227655 None:intergenic 25.0%
! GATTACGTTGTTAACAATAT+GGG + chr5_4:61227642-61227661 Msa0861800:CDS 25.0%
! ATTACGTTGTTAACAATATG+GGG + chr5_4:61227643-61227662 Msa0861800:CDS 25.0%
! AGGATTATTTGATAAAGGAT+AGG + chr5_4:61227667-61227686 Msa0861800:CDS 25.0%
!!! CAAACATACACTTAGTTTTT+AGG + chr5_4:61227906-61227925 Msa0861800:three_prime_UTR 25.0%
!!! TCTAAAAAGTTCTAAGAAGA+TGG + chr5_4:61227956-61227975 Msa0861800:three_prime_UTR 25.0%
! TAGTTTAGTTGTGTTGAATT+TGG + chr5_4:61228056-61228075 Msa0861800:three_prime_UTR 25.0%
ATGCTTAAACAAGAGATAAG+GGG - chr5_4:61226584-61226603 None:intergenic 30.0%
TTTCAATAGAAACCAAACCA+TGG + chr5_4:61226603-61226622 Msa0861800:exon 30.0%
TGAGAAGAAAATCGAATTTG+AGG + chr5_4:61226684-61226703 Msa0861800:CDS 30.0%
GTGAATTAACCTGTAATTTG+AGG - chr5_4:61226756-61226775 None:intergenic 30.0%
ACTGTTCCTGTTATTAAAGA+TGG + chr5_4:61226894-61226913 Msa0861800:CDS 30.0%
TAGTCTCCATCTTTAATAAC+AGG - chr5_4:61226903-61226922 None:intergenic 30.0%
! AAGTAGAAAAGCATGACATA+GGG - chr5_4:61226952-61226971 None:intergenic 30.0%
! TAAGTAGAAAAGCATGACAT+AGG - chr5_4:61226953-61226972 None:intergenic 30.0%
GCTTGTAAACACTTTAAACA+AGG + chr5_4:61227014-61227033 Msa0861800:intron 30.0%
CTACCCTCAAAAAAAAATTG+AGG - chr5_4:61227073-61227092 None:intergenic 30.0%
TTGAGGGTAGACATAATATT+TGG + chr5_4:61227083-61227102 Msa0861800:intron 30.0%
! CATATAACCAATAGTATTGG+AGG - chr5_4:61227142-61227161 None:intergenic 30.0%
GCTGAAAAATATAGATCTCA+AGG + chr5_4:61227342-61227361 Msa0861800:CDS 30.0%
TAGGAAAGACAATAGAAGAA+AGG + chr5_4:61227376-61227395 Msa0861800:CDS 30.0%
AGGAAAGACAATAGAAGAAA+GGG + chr5_4:61227377-61227396 Msa0861800:CDS 30.0%
TGTTGAACATTTATGAAGAG+AGG + chr5_4:61227550-61227569 Msa0861800:CDS 30.0%
GGATTACGTTGTTAACAATA+TGG + chr5_4:61227641-61227660 Msa0861800:CDS 30.0%
ATATAAGTAGTAGACCATCA+TGG + chr5_4:61227715-61227734 Msa0861800:CDS 30.0%
AAGATACACTTCACTTAAGT+TGG - chr5_4:61227768-61227787 None:intergenic 30.0%
TGGTAAATGTTACACTTTAG+AGG + chr5_4:61227835-61227854 Msa0861800:three_prime_UTR 30.0%
!! AAAAAGTTCTAAGAAGATGG+TGG + chr5_4:61227959-61227978 Msa0861800:three_prime_UTR 30.0%
!! ATTTTAAAGAAGGAAGATGG+CGG + chr5_4:61227994-61228013 Msa0861800:three_prime_UTR 30.0%
AGGATAGAAGTAACAAATAG+TGG - chr5_4:61228028-61228047 None:intergenic 30.0%
ATGCTTAAACAAGAGATAAG+GGG - chr5_4:61226584-61226603 None:intergenic 30.0%
TTTCAATAGAAACCAAACCA+TGG + chr5_4:61226603-61226622 Msa0861800:exon 30.0%
TGAGAAGAAAATCGAATTTG+AGG + chr5_4:61226684-61226703 Msa0861800:CDS 30.0%
GTGAATTAACCTGTAATTTG+AGG - chr5_4:61226756-61226775 None:intergenic 30.0%
ACTGTTCCTGTTATTAAAGA+TGG + chr5_4:61226894-61226913 Msa0861800:CDS 30.0%
TAGTCTCCATCTTTAATAAC+AGG - chr5_4:61226903-61226922 None:intergenic 30.0%
! AAGTAGAAAAGCATGACATA+GGG - chr5_4:61226952-61226971 None:intergenic 30.0%
! TAAGTAGAAAAGCATGACAT+AGG - chr5_4:61226953-61226972 None:intergenic 30.0%
GCTTGTAAACACTTTAAACA+AGG + chr5_4:61227014-61227033 Msa0861800:intron 30.0%
CTACCCTCAAAAAAAAATTG+AGG - chr5_4:61227073-61227092 None:intergenic 30.0%
TTGAGGGTAGACATAATATT+TGG + chr5_4:61227083-61227102 Msa0861800:intron 30.0%
! CATATAACCAATAGTATTGG+AGG - chr5_4:61227142-61227161 None:intergenic 30.0%
GCTGAAAAATATAGATCTCA+AGG + chr5_4:61227342-61227361 Msa0861800:CDS 30.0%
TAGGAAAGACAATAGAAGAA+AGG + chr5_4:61227376-61227395 Msa0861800:CDS 30.0%
AGGAAAGACAATAGAAGAAA+GGG + chr5_4:61227377-61227396 Msa0861800:CDS 30.0%
TGTTGAACATTTATGAAGAG+AGG + chr5_4:61227550-61227569 Msa0861800:CDS 30.0%
GGATTACGTTGTTAACAATA+TGG + chr5_4:61227641-61227660 Msa0861800:CDS 30.0%
ATATAAGTAGTAGACCATCA+TGG + chr5_4:61227715-61227734 Msa0861800:CDS 30.0%
AAGATACACTTCACTTAAGT+TGG - chr5_4:61227768-61227787 None:intergenic 30.0%
TGGTAAATGTTACACTTTAG+AGG + chr5_4:61227835-61227854 Msa0861800:three_prime_UTR 30.0%
!! AAAAAGTTCTAAGAAGATGG+TGG + chr5_4:61227959-61227978 Msa0861800:three_prime_UTR 30.0%
!! ATTTTAAAGAAGGAAGATGG+CGG + chr5_4:61227994-61228013 Msa0861800:three_prime_UTR 30.0%
AGGATAGAAGTAACAAATAG+TGG - chr5_4:61228028-61228047 None:intergenic 30.0%
CATTCTTATAGTCACTACTG+AGG - chr5_4:61226532-61226551 None:intergenic 35.0%
AATGAAGTGAACTAACCAAG+AGG + chr5_4:61226548-61226567 Msa0861800:five_prime_UTR 35.0%
GGATGAAAGAAAAACAGAAG+AGG - chr5_4:61226778-61226797 None:intergenic 35.0%
ATAACAGGAACAGTTCCAAA+AGG - chr5_4:61226888-61226907 None:intergenic 35.0%
GAAAAGACCTCCAATACTAT+TGG + chr5_4:61227132-61227151 Msa0861800:intron 35.0%
GGAAAGACAATAGAAGAAAG+GGG + chr5_4:61227378-61227397 Msa0861800:CDS 35.0%
AGGTCAAATTGTATGCTGAT+GGG - chr5_4:61227446-61227465 None:intergenic 35.0%
GCTATCAAAGAGCAAGTATT+TGG + chr5_4:61227572-61227591 Msa0861800:CDS 35.0%
TATGAGTCACCTTCCATTTA+TGG + chr5_4:61227620-61227639 Msa0861800:CDS 35.0%
CAACGTAATCCATAAATGGA+AGG - chr5_4:61227632-61227651 None:intergenic 35.0%
GGGGAAGGATTATTTGATAA+AGG + chr5_4:61227662-61227681 Msa0861800:CDS 35.0%
TCAAGAACTTTGTTCCATGA+TGG - chr5_4:61227732-61227751 None:intergenic 35.0%
!! ATACACTTCACTTAAGTTGG+AGG - chr5_4:61227765-61227784 None:intergenic 35.0%
TGTAACATTTACCACAATCG+TGG - chr5_4:61227829-61227848 None:intergenic 35.0%
! CTTTAGAGGTTAACAAATCG+TGG + chr5_4:61227849-61227868 Msa0861800:three_prime_UTR 35.0%
CATTCTTATAGTCACTACTG+AGG - chr5_4:61226532-61226551 None:intergenic 35.0%
AATGAAGTGAACTAACCAAG+AGG + chr5_4:61226548-61226567 Msa0861800:five_prime_UTR 35.0%
GGATGAAAGAAAAACAGAAG+AGG - chr5_4:61226778-61226797 None:intergenic 35.0%
ATAACAGGAACAGTTCCAAA+AGG - chr5_4:61226888-61226907 None:intergenic 35.0%
GAAAAGACCTCCAATACTAT+TGG + chr5_4:61227132-61227151 Msa0861800:intron 35.0%
GGAAAGACAATAGAAGAAAG+GGG + chr5_4:61227378-61227397 Msa0861800:CDS 35.0%
AGGTCAAATTGTATGCTGAT+GGG - chr5_4:61227446-61227465 None:intergenic 35.0%
GCTATCAAAGAGCAAGTATT+TGG + chr5_4:61227572-61227591 Msa0861800:CDS 35.0%
TATGAGTCACCTTCCATTTA+TGG + chr5_4:61227620-61227639 Msa0861800:CDS 35.0%
CAACGTAATCCATAAATGGA+AGG - chr5_4:61227632-61227651 None:intergenic 35.0%
GGGGAAGGATTATTTGATAA+AGG + chr5_4:61227662-61227681 Msa0861800:CDS 35.0%
TCAAGAACTTTGTTCCATGA+TGG - chr5_4:61227732-61227751 None:intergenic 35.0%
!! ATACACTTCACTTAAGTTGG+AGG - chr5_4:61227765-61227784 None:intergenic 35.0%
TGTAACATTTACCACAATCG+TGG - chr5_4:61227829-61227848 None:intergenic 35.0%
! CTTTAGAGGTTAACAAATCG+TGG + chr5_4:61227849-61227868 Msa0861800:three_prime_UTR 35.0%
! TAGTCACTACTGAGGTTGAT+CGG - chr5_4:61226524-61226543 None:intergenic 40.0%
!!! AGGGGATTTTTTGAACCTCT+TGG - chr5_4:61226566-61226585 None:intergenic 40.0%
! AAACCAAACCATGGTAGTGA+AGG + chr5_4:61226612-61226631 Msa0861800:exon 40.0%
GGTTGTCCCTATTAATGTCT+TGG + chr5_4:61226705-61226724 Msa0861800:CDS 40.0%
TGTCCCTATTAATGTCTTGG+AGG + chr5_4:61226708-61226727 Msa0861800:CDS 40.0%
GTCCCTATTAATGTCTTGGA+GGG + chr5_4:61226709-61226728 Msa0861800:CDS 40.0%
CACCCTCCAAGACATTAATA+GGG - chr5_4:61226714-61226733 None:intergenic 40.0%
TCACCCTCCAAGACATTAAT+AGG - chr5_4:61226715-61226734 None:intergenic 40.0%
ACCTGAGTACCTCAAATTAC+AGG + chr5_4:61226744-61226763 Msa0861800:CDS 40.0%
! ACCTGTAATTTGAGGTACTC+AGG - chr5_4:61226748-61226767 None:intergenic 40.0%
GATGGAGACTATACCCTTTA+TGG + chr5_4:61226912-61226931 Msa0861800:CDS 40.0%
CATCTATTTGTGCAGAGTCT+CGG + chr5_4:61227301-61227320 Msa0861800:intron 40.0%
ATCTATTTGTGCAGAGTCTC+GGG + chr5_4:61227302-61227321 Msa0861800:intron 40.0%
AATAGAAGAAAGGGGTCTTG+TGG + chr5_4:61227386-61227405 Msa0861800:CDS 40.0%
TCAAATTGTATGCTGATGGG+TGG - chr5_4:61227443-61227462 None:intergenic 40.0%
CAGGTCAAATTGTATGCTGA+TGG - chr5_4:61227447-61227466 None:intergenic 40.0%
TGCAGGAAACAAACAATGAC+AGG - chr5_4:61227466-61227485 None:intergenic 40.0%
TCTTCAATCACCTTTGGATC+TGG - chr5_4:61227507-61227526 None:intergenic 40.0%
TCACTCTCTTCAATCACCTT+TGG - chr5_4:61227513-61227532 None:intergenic 40.0%
TGAAGAGAGTGAAGCAAAGT+TGG + chr5_4:61227521-61227540 Msa0861800:CDS 40.0%
GAAGAGAGTGAAGCAAAGTT+GGG + chr5_4:61227522-61227541 Msa0861800:CDS 40.0%
TCAAAGAGCAAGTATTTGGC+TGG + chr5_4:61227576-61227595 Msa0861800:CDS 40.0%
CGTTGTTAACAATATGGGGA+AGG + chr5_4:61227647-61227666 Msa0861800:CDS 40.0%
ATAGGAAGTCTGTTAGTGCT+TGG + chr5_4:61227685-61227704 Msa0861800:CDS 40.0%
! TAGTCACTACTGAGGTTGAT+CGG - chr5_4:61226524-61226543 None:intergenic 40.0%
!!! AGGGGATTTTTTGAACCTCT+TGG - chr5_4:61226566-61226585 None:intergenic 40.0%
! AAACCAAACCATGGTAGTGA+AGG + chr5_4:61226612-61226631 Msa0861800:exon 40.0%
GGTTGTCCCTATTAATGTCT+TGG + chr5_4:61226705-61226724 Msa0861800:CDS 40.0%
TGTCCCTATTAATGTCTTGG+AGG + chr5_4:61226708-61226727 Msa0861800:CDS 40.0%
GTCCCTATTAATGTCTTGGA+GGG + chr5_4:61226709-61226728 Msa0861800:CDS 40.0%
CACCCTCCAAGACATTAATA+GGG - chr5_4:61226714-61226733 None:intergenic 40.0%
TCACCCTCCAAGACATTAAT+AGG - chr5_4:61226715-61226734 None:intergenic 40.0%
ACCTGAGTACCTCAAATTAC+AGG + chr5_4:61226744-61226763 Msa0861800:CDS 40.0%
! ACCTGTAATTTGAGGTACTC+AGG - chr5_4:61226748-61226767 None:intergenic 40.0%
GATGGAGACTATACCCTTTA+TGG + chr5_4:61226912-61226931 Msa0861800:CDS 40.0%
CATCTATTTGTGCAGAGTCT+CGG + chr5_4:61227301-61227320 Msa0861800:intron 40.0%
ATCTATTTGTGCAGAGTCTC+GGG + chr5_4:61227302-61227321 Msa0861800:intron 40.0%
AATAGAAGAAAGGGGTCTTG+TGG + chr5_4:61227386-61227405 Msa0861800:CDS 40.0%
TCAAATTGTATGCTGATGGG+TGG - chr5_4:61227443-61227462 None:intergenic 40.0%
CAGGTCAAATTGTATGCTGA+TGG - chr5_4:61227447-61227466 None:intergenic 40.0%
TGCAGGAAACAAACAATGAC+AGG - chr5_4:61227466-61227485 None:intergenic 40.0%
TCTTCAATCACCTTTGGATC+TGG - chr5_4:61227507-61227526 None:intergenic 40.0%
TCACTCTCTTCAATCACCTT+TGG - chr5_4:61227513-61227532 None:intergenic 40.0%
TGAAGAGAGTGAAGCAAAGT+TGG + chr5_4:61227521-61227540 Msa0861800:CDS 40.0%
GAAGAGAGTGAAGCAAAGTT+GGG + chr5_4:61227522-61227541 Msa0861800:CDS 40.0%
TCAAAGAGCAAGTATTTGGC+TGG + chr5_4:61227576-61227595 Msa0861800:CDS 40.0%
CGTTGTTAACAATATGGGGA+AGG + chr5_4:61227647-61227666 Msa0861800:CDS 40.0%
ATAGGAAGTCTGTTAGTGCT+TGG + chr5_4:61227685-61227704 Msa0861800:CDS 40.0%
ACACCTTCACTACCATGGTT+TGG - chr5_4:61226618-61226637 None:intergenic 45.0%
! ACCATGGTAGTGAAGGTGTA+TGG + chr5_4:61226619-61226638 Msa0861800:exon 45.0%
ACCATACACCTTCACTACCA+TGG - chr5_4:61226623-61226642 None:intergenic 45.0%
AAGACAAACCAGCACACGTT+TGG - chr5_4:61226662-61226681 None:intergenic 45.0%
! GTTCACAATCTGCAGCCTTT+TGG + chr5_4:61226870-61226889 Msa0861800:intron 45.0%
TCTCAAGGGGTTGAGTTACT+AGG + chr5_4:61227357-61227376 Msa0861800:CDS 45.0%
! AAAGGGGTCTTGTGGAACAA+TGG + chr5_4:61227394-61227413 Msa0861800:CDS 45.0%
TTTCCTGCACTACTAGCTGA+CGG + chr5_4:61227477-61227496 Msa0861800:CDS 45.0%
GAAGGTGACTCATATCAGCA+AGG - chr5_4:61227614-61227633 None:intergenic 45.0%
CAAGTGAGTAACCACGATTG+TGG + chr5_4:61227815-61227834 Msa0861800:three_prime_UTR 45.0%
ACACCTTCACTACCATGGTT+TGG - chr5_4:61226618-61226637 None:intergenic 45.0%
! ACCATGGTAGTGAAGGTGTA+TGG + chr5_4:61226619-61226638 Msa0861800:exon 45.0%
ACCATACACCTTCACTACCA+TGG - chr5_4:61226623-61226642 None:intergenic 45.0%
AAGACAAACCAGCACACGTT+TGG - chr5_4:61226662-61226681 None:intergenic 45.0%
! GTTCACAATCTGCAGCCTTT+TGG + chr5_4:61226870-61226889 Msa0861800:intron 45.0%
TCTCAAGGGGTTGAGTTACT+AGG + chr5_4:61227357-61227376 Msa0861800:CDS 45.0%
! AAAGGGGTCTTGTGGAACAA+TGG + chr5_4:61227394-61227413 Msa0861800:CDS 45.0%
TTTCCTGCACTACTAGCTGA+CGG + chr5_4:61227477-61227496 Msa0861800:CDS 45.0%
GAAGGTGACTCATATCAGCA+AGG - chr5_4:61227614-61227633 None:intergenic 45.0%
CAAGTGAGTAACCACGATTG+TGG + chr5_4:61227815-61227834 Msa0861800:three_prime_UTR 45.0%
!!! TTTTTTTATAAAAATATTTG+TGG - chr5_4:61227180-61227199 None:intergenic 5.0%
!!! TTTATTTTTTATTTTAAAGA+AGG + chr5_4:61227984-61228003 Msa0861800:three_prime_UTR 5.0%
!!! TTTTTTTATAAAAATATTTG+TGG - chr5_4:61227180-61227199 None:intergenic 5.0%
!!! TTTATTTTTTATTTTAAAGA+AGG + chr5_4:61227984-61228003 Msa0861800:three_prime_UTR 5.0%
TGATCGGTGGGAATCTTGCT+GGG - chr5_4:61226508-61226527 None:intergenic 50.0%
TTGATCGGTGGGAATCTTGC+TGG - chr5_4:61226509-61226528 None:intergenic 50.0%
! CACTACTGAGGTTGATCGGT+GGG - chr5_4:61226520-61226539 None:intergenic 50.0%
! TCACTACTGAGGTTGATCGG+TGG - chr5_4:61226521-61226540 None:intergenic 50.0%
GAGTGAAGCAAAGTTGGGCA+AGG + chr5_4:61227527-61227546 Msa0861800:CDS 50.0%
GGAAGTCTGTTAGTGCTTGG+TGG + chr5_4:61227688-61227707 Msa0861800:CDS 50.0%
TGATCGGTGGGAATCTTGCT+GGG - chr5_4:61226508-61226527 None:intergenic 50.0%
TTGATCGGTGGGAATCTTGC+TGG - chr5_4:61226509-61226528 None:intergenic 50.0%
! CACTACTGAGGTTGATCGGT+GGG - chr5_4:61226520-61226539 None:intergenic 50.0%
! TCACTACTGAGGTTGATCGG+TGG - chr5_4:61226521-61226540 None:intergenic 50.0%
GAGTGAAGCAAAGTTGGGCA+AGG + chr5_4:61227527-61227546 Msa0861800:CDS 50.0%
GGAAGTCTGTTAGTGCTTGG+TGG + chr5_4:61227688-61227707 Msa0861800:CDS 50.0%
ACTCCACGTAGGGCAAGAAG+CGG - chr5_4:61226485-61226504 None:intergenic 55.0%
TCTTGCTGGGACTCCACGTA+GGG - chr5_4:61226495-61226514 None:intergenic 55.0%
ATCTTGCTGGGACTCCACGT+AGG - chr5_4:61226496-61226515 None:intergenic 55.0%
ACGTTTGGCTGAGGCACAGT+GGG - chr5_4:61226647-61226666 None:intergenic 55.0%
AACCAGCACACGTTTGGCTG+AGG - chr5_4:61226656-61226675 None:intergenic 55.0%
TGACGGCACTCCAGATCCAA+AGG + chr5_4:61227494-61227513 Msa0861800:CDS 55.0%
ACTCCACGTAGGGCAAGAAG+CGG - chr5_4:61226485-61226504 None:intergenic 55.0%
TCTTGCTGGGACTCCACGTA+GGG - chr5_4:61226495-61226514 None:intergenic 55.0%
ATCTTGCTGGGACTCCACGT+AGG - chr5_4:61226496-61226515 None:intergenic 55.0%
ACGTTTGGCTGAGGCACAGT+GGG - chr5_4:61226647-61226666 None:intergenic 55.0%
AACCAGCACACGTTTGGCTG+AGG - chr5_4:61226656-61226675 None:intergenic 55.0%
TGACGGCACTCCAGATCCAA+AGG + chr5_4:61227494-61227513 Msa0861800:CDS 55.0%
TCACCGCTTCTTGCCCTACG+TGG + chr5_4:61226479-61226498 Msa0861800:five_prime_UTR 60.0%
CGTTTGGCTGAGGCACAGTG+GGG - chr5_4:61226646-61226665 None:intergenic 60.0%
CACGTTTGGCTGAGGCACAG+TGG - chr5_4:61226648-61226667 None:intergenic 60.0%
TGCCTCAGCCAAACGTGTGC+TGG + chr5_4:61226651-61226670 Msa0861800:CDS 60.0%
GTGCCGTCAGCTAGTAGTGC+AGG - chr5_4:61227483-61227502 None:intergenic 60.0%
TCACCGCTTCTTGCCCTACG+TGG + chr5_4:61226479-61226498 Msa0861800:five_prime_UTR 60.0%
CGTTTGGCTGAGGCACAGTG+GGG - chr5_4:61226646-61226665 None:intergenic 60.0%
CACGTTTGGCTGAGGCACAG+TGG - chr5_4:61226648-61226667 None:intergenic 60.0%
TGCCTCAGCCAAACGTGTGC+TGG + chr5_4:61226651-61226670 Msa0861800:CDS 60.0%
GTGCCGTCAGCTAGTAGTGC+AGG - chr5_4:61227483-61227502 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 61226443 61228079 61226443 ID=Msa0861800;Name=Msa0861800
chr5_4 mRNA 61226443 61228079 61226443 ID=Msa0861800-mRNA-1;Parent=Msa0861800;Name=Msa0861800-mRNA-1;_AED=0.16;_eAED=0.16;_QI=179|1|1|1|1|1|3|306|216
chr5_4 exon 61226443 61226765 61226443 ID=Msa0861800-mRNA-1:exon:18965;Parent=Msa0861800-mRNA-1
chr5_4 exon 61226885 61226933 61226885 ID=Msa0861800-mRNA-1:exon:18966;Parent=Msa0861800-mRNA-1
chr5_4 exon 61227316 61228079 61227316 ID=Msa0861800-mRNA-1:exon:18967;Parent=Msa0861800-mRNA-1
chr5_4 five_prime_UTR 61226443 61226621 61226443 ID=Msa0861800-mRNA-1:five_prime_utr;Parent=Msa0861800-mRNA-1
chr5_4 CDS 61226622 61226765 61226622 ID=Msa0861800-mRNA-1:cds;Parent=Msa0861800-mRNA-1
chr5_4 CDS 61226885 61226933 61226885 ID=Msa0861800-mRNA-1:cds;Parent=Msa0861800-mRNA-1
chr5_4 CDS 61227316 61227773 61227316 ID=Msa0861800-mRNA-1:cds;Parent=Msa0861800-mRNA-1
chr5_4 three_prime_UTR 61227774 61228079 61227774 ID=Msa0861800-mRNA-1:three_prime_utr;Parent=Msa0861800-mRNA-1
Gene Sequence

>Msa0861800

ATGGTAGTGAAGGTGTATGGTCCCCACTGTGCCTCAGCCAAACGTGTGCTGGTTTGTCTTGTTGAGAAGAAAATCGAATTTGAGGTTGTCCCTATTAATGTCTTGGAGGGTGAACACAAGAAACCTGAGTACCTCAAATTACAGCCTTTTGGAACTGTTCCTGTTATTAAAGATGGAGACTATACCCTTTATGAGTCTCGGGCAATAATGAGATACTATGCTGAAAAATATAGATCTCAAGGGGTTGAGTTACTAGGAAAGACAATAGAAGAAAGGGGTCTTGTGGAACAATGGCTAGAAGTTGAAGCACACAACTTCCACCCATCAGCATACAATTTGACCTGTCATTGTTTGTTTCCTGCACTACTAGCTGACGGCACTCCAGATCCAAAGGTGATTGAAGAGAGTGAAGCAAAGTTGGGCAAGGTGTTGAACATTTATGAAGAGAGGCTATCAAAGAGCAAGTATTTGGCTGGTGATTTTTTCAGCCTTGCTGATATGAGTCACCTTCCATTTATGGATTACGTTGTTAACAATATGGGGAAGGATTATTTGATAAAGGATAGGAAGTCTGTTAGTGCTTGGTGGAATGATATAAGTAGTAGACCATCATGGAACAAAGTTCTTGAGTTATATAGACCTCCAACTTAA

Protein sequence

>Msa0861800

MVVKVYGPHCASAKRVLVCLVEKKIEFEVVPINVLEGEHKKPEYLKLQPFGTVPVIKDGDYTLYESRAIMRYYAEKYRSQGVELLGKTIEERGLVEQWLEVEAHNFHPSAYNLTCHCLFPALLADGTPDPKVIEESEAKLGKVLNIYEERLSKSKYLAGDFFSLADMSHLPFMDYVVNNMGKDYLIKDRKSVSAWWNDISSRPSWNKVLELYRPPT*