AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129190 MtrunA17_Chr1g0195891 98.555 346 1 2 1 345 1 343 0.0 684
Msa0129190 MtrunA17_Chr1g0195891 53.947 76 33 1 297 370 91 166 3.50e-21 94.7
Msa0129190 MtrunA17_Chr4g0066941 53.069 505 176 11 4 459 5 497 3.89e-144 422
Msa0129190 MtrunA17_Chr2g0286151 51.282 468 191 13 1 444 1 455 1.93e-129 384
Msa0129190 MtrunA17_Chr7g0249221 48.626 364 171 8 33 386 9 366 3.62e-108 327
Msa0129190 MtrunA17_Chr5g0438891 36.923 390 209 10 48 433 36 392 2.33e-76 245
Msa0129190 MtrunA17_Chr5g0438891 37.838 111 57 3 12 122 237 335 9.98e-16 79.0
Msa0129190 MtrunA17_Chr5g0438891 38.614 101 50 2 293 388 32 125 2.90e-15 77.8
Msa0129190 MtrunA17_Chr4g0058011 36.207 348 168 13 44 374 227 537 4.87e-61 209
Msa0129190 MtrunA17_Chr4g0058011 50.538 93 43 1 93 185 458 547 1.57e-21 97.8
Msa0129190 MtrunA17_Chr3g0116431 34.985 343 177 9 42 370 165 475 5.02e-59 202
Msa0129190 MtrunA17_Chr3g0116431 47.368 114 54 3 92 204 399 507 1.81e-20 94.0
Msa0129190 MtrunA17_Chr3g0116431 35.000 100 58 2 297 393 171 266 8.73e-13 70.5
Msa0129190 MtrunA17_Chr1g0195901 96.970 99 3 0 374 472 1 99 9.57e-56 180
Msa0129190 MtrunA17_Chr8g0356241 33.803 355 197 9 42 370 132 474 1.14e-55 193
Msa0129190 MtrunA17_Chr8g0356241 36.025 161 56 3 56 170 317 476 2.21e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129190 AT2G47850.1 64.990 477 148 9 3 472 1 465 0.0 573
Msa0129190 AT2G47850.3 64.990 477 148 9 3 472 1 465 0.0 573
Msa0129190 AT2G47850.2 60.168 477 145 10 3 472 1 439 8.97e-178 506
Msa0129190 AT2G47850.4 63.818 351 112 7 129 472 1 343 2.98e-136 396
Msa0129190 AT2G47850.4 53.571 84 39 0 86 169 157 240 1.50e-23 102
Msa0129190 AT2G47850.4 41.414 99 51 2 46 137 162 260 2.30e-16 80.9
Msa0129190 AT5G18550.1 49.036 467 198 15 19 465 18 464 1.82e-125 373
Msa0129190 AT5G18550.4 52.267 419 162 13 19 417 18 418 2.88e-125 372
Msa0129190 AT5G18550.3 49.087 438 186 12 46 465 14 432 5.17e-123 366
Msa0129190 AT3G06410.1 52.184 412 169 11 1 393 1 403 5.03e-119 357
Msa0129190 AT5G18550.2 47.629 464 196 15 19 465 18 451 1.06e-118 355
Msa0129190 AT3G02830.1 46.154 364 166 7 33 386 19 362 3.88e-102 311
Msa0129190 AT3G02830.2 46.409 362 164 7 35 386 1 342 1.24e-101 309
Msa0129190 AT5G16540.1 43.003 393 154 13 33 410 20 357 1.91e-90 280
Msa0129190 AT5G16540.1 37.107 159 78 6 297 446 84 229 2.60e-20 92.8
Msa0129190 AT5G16540.3 43.223 391 152 13 35 410 1 336 4.14e-90 279
Msa0129190 AT5G16540.3 37.107 159 78 6 297 446 63 208 2.16e-20 92.8
Msa0129190 AT5G16540.2 41.432 391 156 13 33 410 20 350 3.69e-84 264
Msa0129190 AT5G16540.2 37.107 159 78 6 297 446 84 229 1.98e-20 93.2
Msa0129190 AT5G16540.4 43.614 321 119 11 35 345 1 269 3.76e-75 237
Msa0129190 AT5G16540.4 37.107 159 78 6 297 446 63 208 9.78e-21 92.4
Msa0129190 AT5G16540.4 43.878 98 50 2 297 393 18 111 5.83e-17 81.3
Msa0129190 AT1G04990.1 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0129190 AT1G04990.6 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0129190 AT1G04990.2 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0129190 AT3G48440.1 35.511 352 192 9 48 387 107 435 4.96e-62 209
Msa0129190 AT3G48440.1 33.858 127 34 2 294 370 104 230 2.80e-15 78.2
Msa0129190 AT3G48440.1 39.241 79 45 2 45 121 340 417 3.61e-11 65.5
Msa0129190 AT2G32930.2 34.667 375 195 12 31 392 21 358 1.69e-58 199
Msa0129190 AT2G32930.3 36.338 355 179 11 48 392 14 331 2.62e-58 198
Msa0129190 AT1G04990.5 33.708 356 160 9 28 370 21 313 1.08e-56 193
Msa0129190 AT1G04990.5 38.043 92 56 1 297 388 44 134 7.13e-14 73.6
Msa0129190 AT5G63260.1 35.429 350 189 11 48 386 98 421 5.59e-54 187
Msa0129190 AT5G63260.1 42.718 103 54 1 89 191 327 424 2.07e-18 87.8
Msa0129190 AT5G63260.1 32.394 142 41 3 296 388 97 232 3.20e-15 78.2
Msa0129190 AT5G63260.1 38.462 78 47 1 45 121 328 405 3.49e-12 68.6
Msa0129190 AT2G32930.1 33.867 375 194 13 31 392 21 354 1.48e-53 186
Msa0129190 AT3G12680.1 33.705 359 195 9 33 370 163 499 7.01e-52 184
Msa0129190 AT3G12680.1 39.024 164 58 4 49 170 338 501 5.68e-27 114
Msa0129190 AT3G12680.1 41.748 103 51 2 28 122 398 499 1.73e-17 85.5
Msa0129190 AT5G63260.2 33.880 366 189 11 48 386 98 437 1.29e-51 181
Msa0129190 AT5G63260.2 42.718 103 54 1 89 191 343 440 2.03e-18 87.8
Msa0129190 AT5G63260.2 45.652 92 42 2 299 388 163 248 7.92e-18 86.3
Msa0129190 AT5G63260.2 38.462 78 47 1 45 121 344 421 3.86e-12 68.6
Msa0129190 AT1G04990.3 35.714 280 125 7 103 370 16 252 3.31e-44 158
Msa0129190 AT1G04990.3 48.571 70 36 0 59 128 17 86 7.62e-18 84.7
Msa0129190 AT1G04990.3 38.017 121 61 4 81 190 165 282 1.10e-13 72.4
Msa0129190 AT1G04990.4 33.453 278 114 7 103 370 16 232 7.57e-37 137
Msa0129190 AT1G04990.4 48.571 70 36 0 59 128 17 86 9.73e-18 84.3
Msa0129190 AT1G48195.1 51.250 80 37 1 292 369 1 80 3.65e-20 85.1
Msa0129190 AT1G48195.1 52.000 75 36 0 93 167 6 80 1.43e-18 80.5

Find 192 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGGGTTGTTCCATTTCC+TGG 0.149575 1_3:+59007820 Msa0129190:CDS
ACCGGTTCACCGGGTCTTTC+AGG 0.153591 1_3:-59008139 None:intergenic
AAAACTGGAACCTGTAAATT+TGG 0.163743 1_3:+59007360 Msa0129190:CDS
AAAACGGGGCAGTGCAAATT+TGG 0.196691 1_3:+59007592 Msa0129190:CDS
AGAACTGGGGACTGTAAATT+TGG 0.217131 1_3:+59008178 Msa0129190:CDS
CAAGCTCCACTAAATATTTA+TGG 0.224349 1_3:+59007432 Msa0129190:CDS
CGAGAGAGACAGAAAGAAAA+TGG 0.228655 1_3:-59006255 None:intergenic
CTTCAACATCTTCAGAATTT+CGG 0.252360 1_3:+59010533 Msa0129190:CDS
ATGCTCCTCTCAGTATTTAA+TGG 0.254508 1_3:+59010813 Msa0129190:three_prime_UTR
CAAAATGGGCACTGCAAGTT+TGG 0.265662 1_3:+59010391 Msa0129190:CDS
CTGGCGCGCAACCTGCTGTT+GGG 0.306993 1_3:+59007996 Msa0129190:CDS
ACAAGACGCGCCAAATTTAC+AGG 0.307599 1_3:-59007370 None:intergenic
CTTCATACTATTATGCTTTG+TGG 0.327068 1_3:+59010973 Msa0129190:three_prime_UTR
GAAGAGGGCAGAGGAGTATA+AGG 0.330274 1_3:-59008076 None:intergenic
TCCTGAAGTGTGTTTCCTCC+AGG 0.341736 1_3:-59008106 None:intergenic
GGAGATAACACAGGGCTTAC+AGG 0.346214 1_3:-59007974 None:intergenic
TCCTGGATGGAGTCCTTATT+CGG 0.346285 1_3:+59007837 Msa0129190:CDS
CTGCCCTCTTCTCCTGGCCC+TGG 0.347929 1_3:+59008088 Msa0129190:CDS
GTTGGGGCTACTTCTCTTTA+CGG 0.355067 1_3:+59008013 Msa0129190:CDS
TGCTCCTATTATTTGAAAAC+GGG 0.359605 1_3:+59007577 Msa0129190:CDS
CATTCTGGCTGAAAAGGAAT+TGG 0.360799 1_3:-59010575 None:intergenic
CATTCATCTGGAAATGGTTC+TGG 0.366848 1_3:+59010598 Msa0129190:CDS
TCATATGTACAAGGGGCTTA+TGG 0.368244 1_3:+59007781 Msa0129190:CDS
CCAACAGCAGGTTGCGCGCC+AGG 0.368459 1_3:-59007995 None:intergenic
AAAGAGAGTTAGCGATTTAG+AGG 0.369711 1_3:+59011061 Msa0129190:three_prime_UTR
CGACCACTTCTTAGTCCCTT+TGG 0.371098 1_3:+59008244 Msa0129190:CDS
TATGTGTCTCTTACCGAATA+AGG 0.372520 1_3:-59007850 None:intergenic
TGCCAATACTATATGAGAAC+TGG 0.381157 1_3:+59008163 Msa0129190:CDS
TAAGATGATTATGTTTAGAC+AGG 0.383054 1_3:+59011010 Msa0129190:three_prime_UTR
GTTTGTGTAGTAGAATGTTC+TGG 0.384435 1_3:-59006326 None:intergenic
GCTGCTGATGCTACTGCTCT+TGG 0.385955 1_3:+59006484 Msa0129190:CDS
ACTCCTCTGCCCTCTTCTCC+TGG 0.392892 1_3:+59008082 Msa0129190:CDS
CTCGACTCGACGAGGAAGTT+AGG 0.394395 1_3:+59006274 Msa0129190:five_prime_UTR
GGAGGTTCGCCAAGCCTCTC+CGG 0.397154 1_3:-59007213 None:intergenic
AGAGTCGAACCGGTCGTAAT+GGG 0.398417 1_3:-59007458 None:intergenic
TGTGCTTATTATATGAGAAC+CGG 0.398738 1_3:+59006688 Msa0129190:CDS
TGCAGTGCAAAACTGACATT+CGG 0.398789 1_3:-59011086 None:intergenic
TTGGATCCTGACTTCAGTTC+AGG 0.402122 1_3:-59010556 None:intergenic
CCTGGCGCGCAACCTGCTGT+TGG 0.402151 1_3:+59007995 Msa0129190:CDS
AAGAGTCGAACCGGTCGTAA+TGG 0.402365 1_3:-59007459 None:intergenic
TCAGCCAGAATGCATTCATC+TGG 0.404570 1_3:+59010586 Msa0129190:CDS
AGCCCCTTGTACATATGAAC+CGG 0.406272 1_3:-59007776 None:intergenic
TAAGGACTCCATCCAGGAAA+TGG 0.406810 1_3:-59007832 None:intergenic
TGAATGCATTCTGGCTGAAA+AGG 0.407290 1_3:-59010581 None:intergenic
GGTGGGTCTGTCTCACTGTC+TGG 0.408100 1_3:+59010649 Msa0129190:CDS
GTGCTCCTATTATTTGAAAA+CGG 0.410929 1_3:+59007576 Msa0129190:CDS
GTGTTTACGAGAAAGGAAAA+TGG 0.411487 1_3:-59006355 None:intergenic
CATAAATATTTAGTGGAGCT+TGG 0.417854 1_3:-59007431 None:intergenic
CTGTACAGTGTTTACGAGAA+AGG 0.418611 1_3:-59006362 None:intergenic
CCTCCTCTGCCGGAACAGTT+TGG 0.418933 1_3:+59007709 Msa0129190:CDS
TCCTGAAAGACCCGGTGAAC+CGG 0.419994 1_3:+59008138 Msa0129190:CDS
TTCGGTACACCATGTCTCTC+CGG 0.421325 1_3:-59006664 None:intergenic
CCAACTGGGTATGGAGCAAC+TGG 0.428649 1_3:-59010487 None:intergenic
TATGCTTTGTGGACTTATGC+TGG 0.433115 1_3:+59010984 Msa0129190:three_prime_UTR
GGTCCCGTGCTTCTTTCCCC+AGG 0.436024 1_3:+59007802 Msa0129190:CDS
CCCTGGAGGAAACACACTTC+AGG 0.438306 1_3:+59008105 Msa0129190:CDS
ATTTCCAGATGAATGCATTC+TGG 0.440875 1_3:-59010590 None:intergenic
GCTGCTGCAGTAAGAGCTAC+AGG 0.442302 1_3:+59007183 Msa0129190:CDS
CAGTTGCTCCATACCCAGTT+GGG 0.446844 1_3:+59010488 Msa0129190:CDS
AATGGTTCTGGTACCTCTGT+TGG 0.448422 1_3:+59010610 Msa0129190:CDS
CATTTATCACTTGGTGGTGG+TGG 0.458400 1_3:+59006628 Msa0129190:CDS
CTCATATAATAAGCACAATT+CGG 0.458439 1_3:-59006682 None:intergenic
CCTGAAGTGTGTTTCCTCCA+GGG 0.458829 1_3:-59008105 None:intergenic
AGTAAAGACCCAACTGGGTA+TGG 0.465151 1_3:-59010496 None:intergenic
GGGTTGTTCCATTTCCTGGA+TGG 0.465512 1_3:+59007824 Msa0129190:CDS
GAAGCTCCTCCAAACTGTTC+CGG 0.468963 1_3:-59007718 None:intergenic
GAGAGAGACAGAAAGAAAAT+GGG 0.469232 1_3:-59006254 None:intergenic
CTCATATAGTATTGGCAGAC+CGG 0.470230 1_3:-59008157 None:intergenic
CTTTGGTCTTCCTCTACGCC+CGG 0.470273 1_3:+59008261 Msa0129190:CDS
GTCCCGTGCTTCTTTCCCCA+GGG 0.477072 1_3:+59007803 Msa0129190:CDS
CCAGTTGCTCCATACCCAGT+TGG 0.481757 1_3:+59010487 Msa0129190:CDS
AGAATGCATTCATCTGGAAA+TGG 0.482468 1_3:+59010592 Msa0129190:CDS
TCCTCCAGGGCCAGGAGAAG+AGG 0.485909 1_3:-59008092 None:intergenic
CTTTCTCGTAAACACTGTAC+AGG 0.487912 1_3:+59006363 Msa0129190:five_prime_UTR
CCAGGAAATGGAACAACCCC+TGG 0.488180 1_3:-59007820 None:intergenic
GCTTGGCGAACCTCCATGTC+AGG 0.489422 1_3:+59007221 Msa0129190:CDS
CCCCAGTTCTCATATAGTAT+TGG 0.489917 1_3:-59008165 None:intergenic
CTGAAGATGTTGAAGGAACC+AGG 0.490486 1_3:-59010525 None:intergenic
GTAAGCCCTGTGTTATCTCC+TGG 0.490761 1_3:+59007977 Msa0129190:CDS
CCCTCTTCTCCTGGCCCTGG+AGG 0.494580 1_3:+59008091 Msa0129190:CDS
GGGTATCCATAAATATTTAG+TGG 0.496866 1_3:-59007438 None:intergenic
TTAGATAGTAAAGACCCAAC+TGG 0.497066 1_3:-59010502 None:intergenic
ACCCCTGGGGAAAGAAGCAC+GGG 0.497178 1_3:-59007805 None:intergenic
CGCCATTCATGTTGATTAAG+CGG 0.499950 1_3:-59006454 None:intergenic
GGTCGGAGCCCCACTAGAAA+CGG 0.501024 1_3:+59006424 Msa0129190:CDS
GCAGTGCAAAACTGACATTC+GGG 0.502440 1_3:-59011085 None:intergenic
CCTCTGCCGGAACAGTTTGG+AGG 0.503926 1_3:+59007712 Msa0129190:CDS
TGCAAGTTTGATCATCCTGC+GGG 0.504011 1_3:+59010421 Msa0129190:CDS
CCTCCAAACTGTTCCGGCAG+AGG 0.504937 1_3:-59007712 None:intergenic
TGGGTCTTTACTATCTAACC+TGG 0.505387 1_3:+59010507 Msa0129190:CDS
GGGGACTACCCGGAGAGGCT+TGG 0.507506 1_3:+59007204 Msa0129190:CDS
CGGGTTGGATCCGTTTCTAG+TGG 0.508512 1_3:-59006434 None:intergenic
GCCATTCATGTTGATTAAGC+GGG 0.509081 1_3:-59006453 None:intergenic
GGGTTGGATCCGTTTCTAGT+GGG 0.515461 1_3:-59006433 None:intergenic
AGTGTGTTTCCTCCAGGGCC+AGG 0.516627 1_3:-59008100 None:intergenic
TTCATGTTGATTAAGCGGGT+TGG 0.518663 1_3:-59006449 None:intergenic
TCTTTACCTTTGTACAGAGC+AGG 0.520007 1_3:-59011043 None:intergenic
TTTCGGCCTGAACTGAAGTC+AGG 0.521259 1_3:+59010550 Msa0129190:CDS
CAGAGTTCTGCTTCTTTGAA+CGG 0.524210 1_3:+59010688 Msa0129190:CDS
CGAAATTCTGAAGATGTTGA+AGG 0.524251 1_3:-59010532 None:intergenic
ACCGAATAAGGACTCCATCC+AGG 0.527011 1_3:-59007838 None:intergenic
CCTCCAGGGCCAGGAGAAGA+GGG 0.528497 1_3:-59008091 None:intergenic
GGGCCAGGAGAAGAGGGCAG+AGG 0.530606 1_3:-59008085 None:intergenic
GCTGATGCTACTGCTCTTGG+AGG 0.530886 1_3:+59006487 Msa0129190:CDS
GTATTGGCAGACCGGTTCAC+CGG 0.534770 1_3:-59008149 None:intergenic
GATCACGCGGGTGATTGAAA+CGG 0.536117 1_3:-59006735 None:intergenic
CTCTCTCTCTGGAAACTGTA+CGG 0.536785 1_3:-59006139 None:intergenic
GAGGTTCGCCAAGCCTCTCC+GGG 0.539007 1_3:-59007212 None:intergenic
TCCAACGGTTCCTCCTCTGC+CGG 0.542744 1_3:+59007699 Msa0129190:CDS
TTCCACCATCCTCAACCTGC+TGG 0.542831 1_3:+59007628 Msa0129190:CDS
AGAGAAGTAGCCCCAACAGC+AGG 0.544267 1_3:-59008007 None:intergenic
ATATCATCATCCACGGGACC+AGG 0.545094 1_3:+59008213 Msa0129190:CDS
ATGTGGCATTTATCACTTGG+TGG 0.548863 1_3:+59006622 Msa0129190:CDS
TCGGTACACCATGTCTCTCC+GGG 0.549964 1_3:-59006663 None:intergenic
TCCGGCAGAGGAGGAACCGT+TGG 0.550152 1_3:-59007700 None:intergenic
AATGAAGTGCCAGCAGGTTG+AGG 0.551017 1_3:-59007637 None:intergenic
TATTGGCAGACCGGTTCACC+GGG 0.551065 1_3:-59008148 None:intergenic
CCGTGGATGATGATATCGAC+AGG 0.551295 1_3:-59008206 None:intergenic
CGTTCAAAGAAGCAGAACTC+TGG 0.551424 1_3:-59010687 None:intergenic
AGAGCAGTAGCATCAGCAGC+AGG 0.552367 1_3:-59006481 None:intergenic
ACCCGCTTAATCAACATGAA+TGG 0.553551 1_3:+59006452 Msa0129190:CDS
CACACGAACGAGAGAACACA+AGG 0.555271 1_3:+59006213 Msa0129190:five_prime_UTR
TGCCAGCAGGTTGAGGATGG+TGG 0.556077 1_3:-59007630 None:intergenic
TCGATGTGGCATTTATCACT+TGG 0.559752 1_3:+59006619 Msa0129190:CDS
CCAAACTGTTCCGGCAGAGG+AGG 0.560230 1_3:-59007709 None:intergenic
GCCAATACTATATGAGAACT+GGG 0.562063 1_3:+59008164 Msa0129190:CDS
AGCACACAAGAATCACGATT+GGG 0.562359 1_3:-59010877 None:intergenic
GGGCGTAGAGGAAGACCAAA+GGG 0.563721 1_3:-59008259 None:intergenic
TAAAATTGAGGTGCAGATGC+TGG 0.564467 1_3:-59007661 None:intergenic
AACCCCTGGGGAAAGAAGCA+CGG 0.566411 1_3:-59007806 None:intergenic
TGGCGCGCAACCTGCTGTTG+GGG 0.568122 1_3:+59007997 Msa0129190:CDS
GAAGTGGTCGTGCAGCAACC+TGG 0.569368 1_3:-59008231 None:intergenic
GCTAGACCTCCTGTGTTACC+CGG 0.569379 1_3:+59007757 Msa0129190:CDS
AGTAGAATGTTCTGGAAGAT+CGG 0.569756 1_3:-59006318 None:intergenic
CAGGAAATGGAACAACCCCT+GGG 0.572341 1_3:-59007819 None:intergenic
CTGTCTCTCTCGACTCGACG+AGG 0.573937 1_3:+59006266 Msa0129190:five_prime_UTR
AGCTTCTGCAAGTGTGAGAG+TGG 0.577326 1_3:+59007735 Msa0129190:CDS
TTTCTTCCTGCTCTGTACAA+AGG 0.580033 1_3:+59011037 Msa0129190:three_prime_UTR
TGGCATTTATCACTTGGTGG+TGG 0.580267 1_3:+59006625 Msa0129190:CDS
TCAACAGGTGCAGTCTCCAA+CGG 0.580807 1_3:+59007684 Msa0129190:CDS
CGTGCAGCAACCTGGTCCCG+TGG 0.581143 1_3:-59008223 None:intergenic
CTGTATCTCATTGACCCCGC+AGG 0.585745 1_3:-59010436 None:intergenic
GTGCTTATTATATGAGAACC+GGG 0.587111 1_3:+59006689 Msa0129190:CDS
TAGCACACAAGAATCACGAT+TGG 0.588728 1_3:-59010878 None:intergenic
TCAATAAGAGAAGATGCTGA+TGG 0.590082 1_3:-59010460 None:intergenic
GGTTGGATCCGTTTCTAGTG+GGG 0.592076 1_3:-59006432 None:intergenic
AAACAAAATTATACCTGACA+TGG 0.597128 1_3:-59007234 None:intergenic
TTACCCGGTTCATATGTACA+AGG 0.598382 1_3:+59007772 Msa0129190:CDS
ACCATTCATACCGGGCGTAG+AGG 0.599219 1_3:-59008271 None:intergenic
TTATGGATACCCATTACGAC+CGG 0.600721 1_3:+59007449 Msa0129190:CDS
AAGAGCTACAGGGGACTACC+CGG 0.601311 1_3:+59007194 Msa0129190:CDS
CTGCTGCAGTAAGAGCTACA+GGG 0.603414 1_3:+59007184 Msa0129190:CDS
GAATCTTACCCGGAGAGACA+TGG 0.604072 1_3:+59006655 Msa0129190:CDS
AGGAGCATGAACAGAAGCAA+TGG 0.605978 1_3:-59010798 None:intergenic
AAGAGAGTTAGCGATTTAGA+GGG 0.608238 1_3:+59011062 Msa0129190:three_prime_UTR
AGCATGAACAGAAGCAATGG+TGG 0.610209 1_3:-59010795 None:intergenic
CCTGTCGATATCATCATCCA+CGG 0.616717 1_3:+59008206 Msa0129190:CDS
ACCCGGTTCATATGTACAAG+GGG 0.619952 1_3:+59007774 Msa0129190:CDS
TGCGCGCCAGGAGATAACAC+AGG 0.621580 1_3:-59007983 None:intergenic
GCTGGCAATGAAGTGCCAGC+AGG 0.622750 1_3:-59007643 None:intergenic
TCCACCATATCCACAAAACC+CGG 0.626060 1_3:-59006707 None:intergenic
TAGATAGTAAAGACCCAACT+GGG 0.626186 1_3:-59010501 None:intergenic
ATTCTTGTGTGCTATACACC+AGG 0.628639 1_3:+59010887 Msa0129190:three_prime_UTR
CTGTCGATATCATCATCCAC+GGG 0.629057 1_3:+59008207 Msa0129190:CDS
TCCCGTGCTTCTTTCCCCAG+GGG 0.630198 1_3:+59007804 Msa0129190:CDS
TGCACCTGTTGATAAAATTG+AGG 0.642079 1_3:-59007673 None:intergenic
GCCCCTTGTACATATGAACC+GGG 0.643721 1_3:-59007775 None:intergenic
AAGATGATTATGTTTAGACA+GGG 0.643889 1_3:+59011011 Msa0129190:three_prime_UTR
TGGTGGTGTTGAATCTTACC+CGG 0.644232 1_3:+59006645 Msa0129190:CDS
AGCAGAAGCAGCAGACAGAG+TGG 0.645532 1_3:+59010712 Msa0129190:CDS
ACATATGAACCGGGTAACAC+AGG 0.645643 1_3:-59007766 None:intergenic
ATTACCGCAGCACGATCACG+CGG 0.645892 1_3:-59006748 None:intergenic
ATGCAAGTTTGATCATCCTG+CGG 0.650257 1_3:+59010420 Msa0129190:CDS
AGACCAAAGGGACTAAGAAG+TGG 0.653237 1_3:-59008247 None:intergenic
AAGTGCCAGCAGGTTGAGGA+TGG 0.654749 1_3:-59007633 None:intergenic
CAAAATTATACCTGACATGG+AGG 0.657604 1_3:-59007231 None:intergenic
TACCCGGTTCATATGTACAA+GGG 0.670537 1_3:+59007773 Msa0129190:CDS
GCTCCTATTATTTGAAAACG+GGG 0.671672 1_3:+59007578 Msa0129190:CDS
CGGGCGTAGAGGAAGACCAA+AGG 0.672188 1_3:-59008260 None:intergenic
TCACCCGCGTGATCGTGCTG+CGG 0.674265 1_3:+59006744 Msa0129190:CDS
AAAGTATTTCCTGAAAGACC+CGG 0.677421 1_3:+59008130 Msa0129190:CDS
GCGCGCCAGGAGATAACACA+GGG 0.680593 1_3:-59007982 None:intergenic
CTACAGGGGACTACCCGGAG+AGG 0.687189 1_3:+59007199 Msa0129190:CDS
AAGCATAAAAGAGAATGACC+TGG 0.694248 1_3:-59010905 None:intergenic
TGCTGCAGTAAGAGCTACAG+GGG 0.695738 1_3:+59007185 Msa0129190:CDS
GTTTATGTTCAGAGTCGATG+TGG 0.699078 1_3:+59006605 Msa0129190:intron
TATGAACCGGGTAACACAGG+AGG 0.706559 1_3:-59007763 None:intergenic
AGTTGCCATTAAATACTGAG+AGG 0.712026 1_3:-59010818 None:intergenic
AGGAAATGGAACAACCCCTG+GGG 0.738169 1_3:-59007818 None:intergenic
CCAATACTATATGAGAACTG+GGG 0.738213 1_3:+59008165 Msa0129190:CDS
TTACCGCAGCACGATCACGC+GGG 0.739210 1_3:-59006747 None:intergenic
GCAAGTTTGATCATCCTGCG+GGG 0.750469 1_3:+59010422 Msa0129190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGTAATTTATTAATT+AGG + chr1_3:59006565-59006584 Msa0129190:intron 10.0%
!! TTAATTGAATTTAACAATTT+AGG - chr1_3:59006885-59006904 None:intergenic 10.0%
!! AAATTGTTAAATTCAATTAA+AGG + chr1_3:59006885-59006904 Msa0129190:intron 10.0%
!!! CATTTTTTTCAATTTTTTAT+CGG + chr1_3:59006948-59006967 Msa0129190:intron 10.0%
!! ATATTATTTACACATTTATA+TGG - chr1_3:59008389-59008408 None:intergenic 10.0%
!! AAAAAATAAAATGAATGTTA+AGG - chr1_3:59008617-59008636 None:intergenic 10.0%
!!! CATTATTTGTATATTTTTTA+TGG + chr1_3:59009337-59009356 Msa0129190:intron 10.0%
!! AAATAATATGTATTCTATTC+AGG + chr1_3:59008400-59008419 Msa0129190:intron 15.0%
!! AAATAAACACATTAATAGTT+GGG - chr1_3:59008743-59008762 None:intergenic 15.0%
!!! ATTCAGACATTTATTTTAAT+CGG - chr1_3:59010284-59010303 None:intergenic 15.0%
!!! TAATTTATTTTCTAGAAAAC+AGG + chr1_3:59010342-59010361 Msa0129190:intron 15.0%
!!! AATTTATTTTCTAGAAAACA+GGG + chr1_3:59010343-59010362 Msa0129190:intron 15.0%
!!! TTTTGTATATAAAATGAACA+AGG - chr1_3:59010376-59010395 None:intergenic 15.0%
!!! TGTTCATTTTATATACAAAA+TGG + chr1_3:59010376-59010395 Msa0129190:CDS 15.0%
!!! GTTCATTTTATATACAAAAT+GGG + chr1_3:59010377-59010396 Msa0129190:CDS 15.0%
!! ATGTTATGTTATGTTATGTT+AGG + chr1_3:59006542-59006561 Msa0129190:intron 20.0%
!! TGTTATGTTATGTTATGTTA+GGG + chr1_3:59006543-59006562 Msa0129190:intron 20.0%
!!! ATTAATTAGGGTTTTGATTT+TGG + chr1_3:59006578-59006597 Msa0129190:intron 20.0%
!! TAAAAGGGTTATACTAATTA+CGG + chr1_3:59007310-59007329 Msa0129190:intron 20.0%
!! GAACAGTATTATTTAAAAAC+TGG + chr1_3:59007345-59007364 Msa0129190:intron 20.0%
!! AATTCTCTGTAAATTACATA+AGG - chr1_3:59007502-59007521 None:intergenic 20.0%
!!! TTTACAGAGAATTTTTCATA+TGG + chr1_3:59007509-59007528 Msa0129190:intron 20.0%
!!! TATATATGTGATCTGAAATA+TGG + chr1_3:59007879-59007898 Msa0129190:intron 20.0%
!!! CAAATCTCCTTTTAAAAAAA+GGG + chr1_3:59008463-59008482 Msa0129190:intron 20.0%
!! CAAATAAACACATTAATAGT+TGG - chr1_3:59008744-59008763 None:intergenic 20.0%
!! CAACTATTAATGTGTTTATT+TGG + chr1_3:59008742-59008761 Msa0129190:intron 20.0%
!! TAATATCACGTTCATTAAAA+AGG - chr1_3:59009709-59009728 None:intergenic 20.0%
!! TTAACTATCAATTCTGAATT+AGG - chr1_3:59009858-59009877 None:intergenic 20.0%
!!! ATTACTTCGTAAGTAAATTT+TGG + chr1_3:59010049-59010068 Msa0129190:intron 20.0%
!!! TAATCTAAAGCTACTTAATA+TGG - chr1_3:59010200-59010219 None:intergenic 20.0%
!!! TTTGTTTGGGTTTCTTTTTT+AGG - chr1_3:59006391-59006410 None:intergenic 25.0%
! AAAAGAAACCCAAACAAAAA+TGG + chr1_3:59006393-59006412 Msa0129190:exon 25.0%
! CTCATATAATAAGCACAATT+CGG - chr1_3:59006685-59006704 None:intergenic 25.0%
! TGCATAAACCTATATTAGTA+AGG + chr1_3:59007057-59007076 Msa0129190:intron 25.0%
!!! CCTTTTTTCCTTACTAATAT+AGG - chr1_3:59007068-59007087 None:intergenic 25.0%
! CCTATATTAGTAAGGAAAAA+AGG + chr1_3:59007065-59007084 Msa0129190:intron 25.0%
! AAACAAAATTATACCTGACA+TGG - chr1_3:59007237-59007256 None:intergenic 25.0%
! AAAAGGGTTATACTAATTAC+GGG + chr1_3:59007311-59007330 Msa0129190:intron 25.0%
! ATATGGTTAAACTTAAACCA+TGG + chr1_3:59007526-59007545 Msa0129190:intron 25.0%
!! TGATGATTTTAAATTAGTGC+AGG + chr1_3:59007949-59007968 Msa0129190:intron 25.0%
!!! TAAACTATAAGAAGTACTGA+TGG - chr1_3:59008438-59008457 None:intergenic 25.0%
! ATCAGTACTTCTTATAGTTT+AGG + chr1_3:59008437-59008456 Msa0129190:intron 25.0%
!!! CCTTTTTTTAAAAGGAGATT+TGG - chr1_3:59008465-59008484 None:intergenic 25.0%
!!! CCAAATCTCCTTTTAAAAAA+AGG + chr1_3:59008462-59008481 Msa0129190:intron 25.0%
!!! TTTGGTTCCCTTTTTTTAAA+AGG - chr1_3:59008473-59008492 None:intergenic 25.0%
! CTTAAAAACCATGTTATCAA+GGG - chr1_3:59008660-59008679 None:intergenic 25.0%
! TCTTAAAAACCATGTTATCA+AGG - chr1_3:59008661-59008680 None:intergenic 25.0%
! TAGAGTTAGTTAAATCTTAG+CGG + chr1_3:59009300-59009319 Msa0129190:intron 25.0%
!! TGTCTGTTTATTCTGAAAAA+TGG + chr1_3:59009520-59009539 Msa0129190:intron 25.0%
!! GTCTGTTTATTCTGAAAAAT+GGG + chr1_3:59009521-59009540 Msa0129190:intron 25.0%
!! TCTGTTTATTCTGAAAAATG+GGG + chr1_3:59009522-59009541 Msa0129190:intron 25.0%
! TACATCACTACATTGAAATT+TGG - chr1_3:59009900-59009919 None:intergenic 25.0%
!!! TTAATTTGTGTGCATTCTTT+TGG + chr1_3:59010305-59010324 Msa0129190:intron 25.0%
!!! TAATTTGTGTGCATTCTTTT+GGG + chr1_3:59010306-59010325 Msa0129190:intron 25.0%
! TGAAAAAATTAAACCAACAG+AGG - chr1_3:59010626-59010645 None:intergenic 25.0%
!!! GTTGGTTTAATTTTTTCACA+AGG + chr1_3:59010628-59010647 Msa0129190:CDS 25.0%
!!! GTTTAATTTTTTCACAAGGT+GGG + chr1_3:59010632-59010651 Msa0129190:CDS 25.0%
! TAAGATGATTATGTTTAGAC+AGG + chr1_3:59011010-59011029 Msa0129190:three_prime_UTR 25.0%
! AAGATGATTATGTTTAGACA+GGG + chr1_3:59011011-59011030 Msa0129190:three_prime_UTR 25.0%
!! GTACAAGTCCATTTTTGTTT+GGG - chr1_3:59006404-59006423 None:intergenic 30.0%
! CAAACAAAAATGGACTTGTA+CGG + chr1_3:59006403-59006422 Msa0129190:exon 30.0%
!!! AATTAGGGTTTTGATTTTGG+TGG + chr1_3:59006581-59006600 Msa0129190:intron 30.0%
TGTGCTTATTATATGAGAAC+CGG + chr1_3:59006688-59006707 Msa0129190:CDS 30.0%
AATGCAGATAACTAAAAACG+AGG - chr1_3:59006781-59006800 None:intergenic 30.0%
AGGAATAAAATTAACCATCC+AGG - chr1_3:59006865-59006884 None:intergenic 30.0%
! TCAGTGATATACATTTGCTA+AGG + chr1_3:59006981-59007000 Msa0129190:intron 30.0%
! CAGTGATATACATTTGCTAA+GGG + chr1_3:59006982-59007001 Msa0129190:intron 30.0%
! TAAGTGATGTACATTTGCTA+AGG + chr1_3:59007121-59007140 Msa0129190:intron 30.0%
! AAGTGATGTACATTTGCTAA+GGG + chr1_3:59007122-59007141 Msa0129190:intron 30.0%
! AACTGACTCAAATATTGTTC+AGG + chr1_3:59007158-59007177 Msa0129190:intron 30.0%
AAAACTGGAACCTGTAAATT+TGG + chr1_3:59007360-59007379 Msa0129190:CDS 30.0%
CATAAATATTTAGTGGAGCT+TGG - chr1_3:59007434-59007453 None:intergenic 30.0%
CAAGCTCCACTAAATATTTA+TGG + chr1_3:59007432-59007451 Msa0129190:CDS 30.0%
GGGTATCCATAAATATTTAG+TGG - chr1_3:59007441-59007460 None:intergenic 30.0%
!! CATGGATTTTGTTTAACACA+GGG + chr1_3:59007544-59007563 Msa0129190:intron 30.0%
GTGCTCCTATTATTTGAAAA+CGG + chr1_3:59007576-59007595 Msa0129190:CDS 30.0%
TGCTCCTATTATTTGAAAAC+GGG + chr1_3:59007577-59007596 Msa0129190:CDS 30.0%
! ATATGTGATCTGAAATATGG+CGG + chr1_3:59007882-59007901 Msa0129190:intron 30.0%
AATTGAGATACCATTCATAC+CGG - chr1_3:59008283-59008302 None:intergenic 30.0%
GTATGAATGGTATCTCAATT+TGG + chr1_3:59008283-59008302 Msa0129190:intron 30.0%
GTTTAGACTAACAACAGATT+TGG - chr1_3:59008491-59008510 None:intergenic 30.0%
GTTCTTCAATTTATGAGACT+AGG - chr1_3:59008879-59008898 None:intergenic 30.0%
AATGAAAGCGGAATAGATAT+GGG - chr1_3:59008922-59008941 None:intergenic 30.0%
AAATGAAAGCGGAATAGATA+TGG - chr1_3:59008923-59008942 None:intergenic 30.0%
CTCAGAATATCAAATGAAAG+CGG - chr1_3:59008934-59008953 None:intergenic 30.0%
!!! CTTGTGACTTTGTTTTAAGA+TGG + chr1_3:59009056-59009075 Msa0129190:intron 30.0%
GTTGTAATTCATGAAAGACA+TGG - chr1_3:59009243-59009262 None:intergenic 30.0%
! CTGTTTATTCTGAAAAATGG+GGG + chr1_3:59009523-59009542 Msa0129190:intron 30.0%
AAGGAAATAGATTGAATAGC+AGG - chr1_3:59009690-59009709 None:intergenic 30.0%
TTCTAAGTGTCTGTAAAACA+AGG + chr1_3:59009738-59009757 Msa0129190:intron 30.0%
TTTGAATGCTTCTTTATCTC+AGG + chr1_3:59009813-59009832 Msa0129190:intron 30.0%
! AATTAGGTTTTGCTAACCTT+GGG - chr1_3:59009842-59009861 None:intergenic 30.0%
! TTTGGAGTTGTAAACTGAAA+AGG - chr1_3:59009882-59009901 None:intergenic 30.0%
AAAGAATGGAAACTACGATA+CGG - chr1_3:59009946-59009965 None:intergenic 30.0%
AAGCACAACTTAAGAAAGAA+TGG - chr1_3:59009960-59009979 None:intergenic 30.0%
!!! TCGTAAGTAAATTTTGGTTG+CGG + chr1_3:59010055-59010074 Msa0129190:intron 30.0%
TCATACGCATCATAAATGAA+AGG - chr1_3:59010250-59010269 None:intergenic 30.0%
CTTCAACATCTTCAGAATTT+CGG + chr1_3:59010533-59010552 Msa0129190:CDS 30.0%
!!! GGTTTAATTTTTTCACAAGG+TGG + chr1_3:59010631-59010650 Msa0129190:CDS 30.0%
!! TTGGGTGACAAATTTTTCAA+TGG - chr1_3:59010862-59010881 None:intergenic 30.0%
CTTCATACTATTATGCTTTG+TGG + chr1_3:59010973-59010992 Msa0129190:three_prime_UTR 30.0%
GAGAGAGACAGAAAGAAAAT+GGG - chr1_3:59006257-59006276 None:intergenic 35.0%
!! AGTAGAATGTTCTGGAAGAT+CGG - chr1_3:59006321-59006340 None:intergenic 35.0%
GTTTGTGTAGTAGAATGTTC+TGG - chr1_3:59006329-59006348 None:intergenic 35.0%
GTGTTTACGAGAAAGGAAAA+TGG - chr1_3:59006358-59006377 None:intergenic 35.0%
!! CGTACAAGTCCATTTTTGTT+TGG - chr1_3:59006405-59006424 None:intergenic 35.0%
GTGCTTATTATATGAGAACC+GGG + chr1_3:59006689-59006708 Msa0129190:CDS 35.0%
!!! TAGTAGATGCTATTTTTGCC+TGG + chr1_3:59006844-59006863 Msa0129190:intron 35.0%
CAAAATTATACCTGACATGG+AGG - chr1_3:59007234-59007253 None:intergenic 35.0%
AAATTCCACCATCCCAAAAA+TGG + chr1_3:59007393-59007412 Msa0129190:CDS 35.0%
!! AAATATCCCCCTCCATTTTT+GGG - chr1_3:59007408-59007427 None:intergenic 35.0%
! TAAATATCCCCCTCCATTTT+TGG - chr1_3:59007409-59007428 None:intergenic 35.0%
AAGAAAAAGAAGAGTCGAAC+CGG - chr1_3:59007471-59007490 None:intergenic 35.0%
CCTGTGTTAAACAAAATCCA+TGG - chr1_3:59007546-59007565 None:intergenic 35.0%
!! CCATGGATTTTGTTTAACAC+AGG + chr1_3:59007543-59007562 Msa0129190:intron 35.0%
GCTCCTATTATTTGAAAACG+GGG + chr1_3:59007578-59007597 Msa0129190:CDS 35.0%
! TGCACCTCAATTTTATCAAC+AGG + chr1_3:59007669-59007688 Msa0129190:CDS 35.0%
! TGCACCTGTTGATAAAATTG+AGG - chr1_3:59007676-59007695 None:intergenic 35.0%
TATGTGTCTCTTACCGAATA+AGG - chr1_3:59007853-59007872 None:intergenic 35.0%
! AAAGTATTTCCTGAAAGACC+CGG + chr1_3:59008130-59008149 Msa0129190:CDS 35.0%
TGCCAATACTATATGAGAAC+TGG + chr1_3:59008163-59008182 Msa0129190:CDS 35.0%
GCCAATACTATATGAGAACT+GGG + chr1_3:59008164-59008183 Msa0129190:CDS 35.0%
CCAATACTATATGAGAACTG+GGG + chr1_3:59008165-59008184 Msa0129190:CDS 35.0%
ATTGAGATACCATTCATACC+GGG - chr1_3:59008282-59008301 None:intergenic 35.0%
ATGTATTCTATTCAGGAGTC+AGG + chr1_3:59008407-59008426 Msa0129190:intron 35.0%
! TTTTTGCAAAACTGCAGAGT+TGG + chr1_3:59008634-59008653 Msa0129190:intron 35.0%
AAGATTGTGATATTCCTCGT+AGG + chr1_3:59008677-59008696 Msa0129190:intron 35.0%
CATTTCAGTGGCAATCTATT+AGG - chr1_3:59008821-59008840 None:intergenic 35.0%
CTAATAGATTGCCACTGAAA+TGG + chr1_3:59008819-59008838 Msa0129190:intron 35.0%
ATGAAAGCGGAATAGATATG+GGG - chr1_3:59008921-59008940 None:intergenic 35.0%
AGCTAAGAAAAAGATTGGAG+GGG - chr1_3:59008970-59008989 None:intergenic 35.0%
GAGCTAAGAAAAAGATTGGA+GGG - chr1_3:59008971-59008990 None:intergenic 35.0%
GATGGAGCTAAGAAAAAGAT+TGG - chr1_3:59008975-59008994 None:intergenic 35.0%
! TTTTCTTAGCTCCATCATGT+CGG + chr1_3:59008979-59008998 Msa0129190:intron 35.0%
CAAAGCAAAGAAAACAGTGT+GGG - chr1_3:59009158-59009177 None:intergenic 35.0%
ACAAAGCAAAGAAAACAGTG+TGG - chr1_3:59009159-59009178 None:intergenic 35.0%
TCAAAATTGAGATCCTTCCT+AGG - chr1_3:59009409-59009428 None:intergenic 35.0%
ATTCCTTGATGGAACATGAT+TGG + chr1_3:59009441-59009460 Msa0129190:intron 35.0%
!! ATTGGCTTTCTGTATCTATC+CGG + chr1_3:59009459-59009478 Msa0129190:intron 35.0%
GGATACATGGATCAAACTTA+TGG + chr1_3:59009544-59009563 Msa0129190:intron 35.0%
GGATCAAACTTATGGTTACT+TGG + chr1_3:59009552-59009571 Msa0129190:intron 35.0%
TCATCCAATAACTTGAGCTT+AGG - chr1_3:59009621-59009640 None:intergenic 35.0%
ATTGGATGAATGCACATGAT+TGG + chr1_3:59009632-59009651 Msa0129190:intron 35.0%
! TAGCTTGTGAGTATCTTATG+TGG + chr1_3:59009782-59009801 Msa0129190:intron 35.0%
AGCTTGTGAGTATCTTATGT+GGG + chr1_3:59009783-59009802 Msa0129190:intron 35.0%
! GAATTAGGTTTTGCTAACCT+TGG - chr1_3:59009843-59009862 None:intergenic 35.0%
! TTCTTAAGTTGTGCTTTGCT+TGG + chr1_3:59009964-59009983 Msa0129190:intron 35.0%
TCAATAAGAGAAGATGCTGA+TGG - chr1_3:59010463-59010482 None:intergenic 35.0%
TAGATAGTAAAGACCCAACT+GGG - chr1_3:59010504-59010523 None:intergenic 35.0%
TTAGATAGTAAAGACCCAAC+TGG - chr1_3:59010505-59010524 None:intergenic 35.0%
! CGAAATTCTGAAGATGTTGA+AGG - chr1_3:59010535-59010554 None:intergenic 35.0%
ATTTCCAGATGAATGCATTC+TGG - chr1_3:59010593-59010612 None:intergenic 35.0%
AGAATGCATTCATCTGGAAA+TGG + chr1_3:59010592-59010611 Msa0129190:CDS 35.0%
ATGCTCCTCTCAGTATTTAA+TGG + chr1_3:59010813-59010832 Msa0129190:three_prime_UTR 35.0%
AGTTGCCATTAAATACTGAG+AGG - chr1_3:59010821-59010840 None:intergenic 35.0%
AAGCATAAAAGAGAATGACC+TGG - chr1_3:59010908-59010927 None:intergenic 35.0%
AAAGAGAGTTAGCGATTTAG+AGG + chr1_3:59011061-59011080 Msa0129190:three_prime_UTR 35.0%
AAGAGAGTTAGCGATTTAGA+GGG + chr1_3:59011062-59011081 Msa0129190:three_prime_UTR 35.0%
! TCTTTTTCTCTCTCTCTCTC+TGG - chr1_3:59006153-59006172 None:intergenic 40.0%
CGAGAGAGACAGAAAGAAAA+TGG - chr1_3:59006258-59006277 None:intergenic 40.0%
CTGTACAGTGTTTACGAGAA+AGG - chr1_3:59006365-59006384 None:intergenic 40.0%
CTTTCTCGTAAACACTGTAC+AGG + chr1_3:59006363-59006382 Msa0129190:five_prime_UTR 40.0%
! CAAAAATGGACTTGTACGGT+CGG + chr1_3:59006407-59006426 Msa0129190:exon 40.0%
! TTCATGTTGATTAAGCGGGT+TGG - chr1_3:59006452-59006471 None:intergenic 40.0%
ACCCGCTTAATCAACATGAA+TGG + chr1_3:59006452-59006471 Msa0129190:CDS 40.0%
! GCCATTCATGTTGATTAAGC+GGG - chr1_3:59006456-59006475 None:intergenic 40.0%
! CGCCATTCATGTTGATTAAG+CGG - chr1_3:59006457-59006476 None:intergenic 40.0%
GTTTATGTTCAGAGTCGATG+TGG + chr1_3:59006605-59006624 Msa0129190:intron 40.0%
TCGATGTGGCATTTATCACT+TGG + chr1_3:59006619-59006638 Msa0129190:CDS 40.0%
ATGTGGCATTTATCACTTGG+TGG + chr1_3:59006622-59006641 Msa0129190:CDS 40.0%
! TATATGAGAACCGGGTTTTG+TGG + chr1_3:59006697-59006716 Msa0129190:CDS 40.0%
!!! AGATGCTATTTTTGCCTGGA+TGG + chr1_3:59006848-59006867 Msa0129190:intron 40.0%
TTATGGATACCCATTACGAC+CGG + chr1_3:59007449-59007468 Msa0129190:CDS 40.0%
! CTGCCCCGTTTTCAAATAAT+AGG - chr1_3:59007584-59007603 None:intergenic 40.0%
TAAAATTGAGGTGCAGATGC+TGG - chr1_3:59007664-59007683 None:intergenic 40.0%
TTACCCGGTTCATATGTACA+AGG + chr1_3:59007772-59007791 Msa0129190:CDS 40.0%
TACCCGGTTCATATGTACAA+GGG + chr1_3:59007773-59007792 Msa0129190:CDS 40.0%
TCATATGTACAAGGGGCTTA+TGG + chr1_3:59007781-59007800 Msa0129190:CDS 40.0%
!! CTCATATAGTATTGGCAGAC+CGG - chr1_3:59008160-59008179 None:intergenic 40.0%
CCCCAGTTCTCATATAGTAT+TGG - chr1_3:59008168-59008187 None:intergenic 40.0%
AGAACTGGGGACTGTAAATT+TGG + chr1_3:59008178-59008197 Msa0129190:CDS 40.0%
GTGCGTACATGTATTATGTG+TGG + chr1_3:59008707-59008726 Msa0129190:intron 40.0%
ACCAGGTTAGTGTGTATACT+TGG - chr1_3:59008772-59008791 None:intergenic 40.0%
GTATACACACTAACCTGGTT+TGG + chr1_3:59008773-59008792 Msa0129190:intron 40.0%
ATAGATTGCCACTGAAATGG+CGG + chr1_3:59008822-59008841 Msa0129190:intron 40.0%
! AAAGTTTTCCGCCATTTCAG+TGG - chr1_3:59008833-59008852 None:intergenic 40.0%
ATTGAAGAACCCCATCCTTA+TGG + chr1_3:59008889-59008908 Msa0129190:intron 40.0%
GGAGCTAAGAAAAAGATTGG+AGG - chr1_3:59008972-59008991 None:intergenic 40.0%
AAGATGAAACACCCACAAAG+GGG - chr1_3:59009039-59009058 None:intergenic 40.0%
CAAGATGAAACACCCACAAA+GGG - chr1_3:59009040-59009059 None:intergenic 40.0%
ACAAGATGAAACACCCACAA+AGG - chr1_3:59009041-59009060 None:intergenic 40.0%
TGAACTCAACACCGTATCTT+TGG + chr1_3:59009080-59009099 Msa0129190:intron 40.0%
ATGGGTCTTGACCAAAGATA+CGG - chr1_3:59009094-59009113 None:intergenic 40.0%
ATCTTTGGTCAAGACCCATA+AGG + chr1_3:59009095-59009114 Msa0129190:intron 40.0%
GAGAAACAGGTAGTCCTTAT+GGG - chr1_3:59009112-59009131 None:intergenic 40.0%
TGAGAAACAGGTAGTCCTTA+TGG - chr1_3:59009113-59009132 None:intergenic 40.0%
! ACTACCTGTTTCTCACTGTT+GGG + chr1_3:59009118-59009137 Msa0129190:intron 40.0%
TTCTCTTCCCAATTGATCCT+AGG + chr1_3:59009389-59009408 Msa0129190:intron 40.0%
GATCCTTCCTAGGATCAATT+GGG - chr1_3:59009399-59009418 None:intergenic 40.0%
AGATCCTTCCTAGGATCAAT+TGG - chr1_3:59009400-59009419 None:intergenic 40.0%
AACCTTGCTTGATTCCTTGA+TGG + chr1_3:59009430-59009449 Msa0129190:intron 40.0%
TTCCATCAAGGAATCAAGCA+AGG - chr1_3:59009435-59009454 None:intergenic 40.0%
AAGCCAATCATGTTCCATCA+AGG - chr1_3:59009447-59009466 None:intergenic 40.0%
!! AGACCCAAGCTTTTGTTTGA+GGG - chr1_3:59009487-59009506 None:intergenic 40.0%
TCTGAAAAATGGGGGATACA+TGG + chr1_3:59009531-59009550 Msa0129190:intron 40.0%
TAACTTGAGCTTAGGAGAGT+TGG - chr1_3:59009613-59009632 None:intergenic 40.0%
CTCTCCTAAGCTCAAGTTAT+TGG + chr1_3:59009614-59009633 Msa0129190:intron 40.0%
TCTTTATCTCAGGAAACCCA+AGG + chr1_3:59009823-59009842 Msa0129190:intron 40.0%
TAAGTTGTGCTTTGCTTGGT+TGG + chr1_3:59009968-59009987 Msa0129190:intron 40.0%
ATCAAAAGTCCCCTGTAAGA+GGG - chr1_3:59010094-59010113 None:intergenic 40.0%
ATGCAAGTTTGATCATCCTG+CGG + chr1_3:59010420-59010439 Msa0129190:CDS 40.0%
TGGGTCTTTACTATCTAACC+TGG + chr1_3:59010507-59010526 Msa0129190:CDS 40.0%
! CATTCTGGCTGAAAAGGAAT+TGG - chr1_3:59010578-59010597 None:intergenic 40.0%
! TGAATGCATTCTGGCTGAAA+AGG - chr1_3:59010584-59010603 None:intergenic 40.0%
CATTCATCTGGAAATGGTTC+TGG + chr1_3:59010598-59010617 Msa0129190:CDS 40.0%
CAGAGTTCTGCTTCTTTGAA+CGG + chr1_3:59010688-59010707 Msa0129190:CDS 40.0%
AGCACACAAGAATCACGATT+GGG - chr1_3:59010880-59010899 None:intergenic 40.0%
TAGCACACAAGAATCACGAT+TGG - chr1_3:59010881-59010900 None:intergenic 40.0%
ATTCTTGTGTGCTATACACC+AGG + chr1_3:59010887-59010906 Msa0129190:three_prime_UTR 40.0%
TATGCTTTGTGGACTTATGC+TGG + chr1_3:59010984-59011003 Msa0129190:three_prime_UTR 40.0%
TTTCTTCCTGCTCTGTACAA+AGG + chr1_3:59011037-59011056 Msa0129190:three_prime_UTR 40.0%
TCTTTACCTTTGTACAGAGC+AGG - chr1_3:59011046-59011065 None:intergenic 40.0%
! CTCTCTCTCTGGAAACTGTA+CGG - chr1_3:59006142-59006161 None:intergenic 45.0%
! TGGCATTTATCACTTGGTGG+TGG + chr1_3:59006625-59006644 Msa0129190:CDS 45.0%
!! CATTTATCACTTGGTGGTGG+TGG + chr1_3:59006628-59006647 Msa0129190:CDS 45.0%
! TGGTGGTGTTGAATCTTACC+CGG + chr1_3:59006645-59006664 Msa0129190:CDS 45.0%
!! AGAACCGGGTTTTGTGGATA+TGG + chr1_3:59006703-59006722 Msa0129190:CDS 45.0%
TCCACCATATCCACAAAACC+CGG - chr1_3:59006710-59006729 None:intergenic 45.0%
!! GGTTTTGTGGATATGGTGGA+AGG + chr1_3:59006710-59006729 Msa0129190:CDS 45.0%
ACAAGACGCGCCAAATTTAC+AGG - chr1_3:59007373-59007392 None:intergenic 45.0%
TTCCACCATCCCAAAAATGG+AGG + chr1_3:59007396-59007415 Msa0129190:CDS 45.0%
TCCACCATCCCAAAAATGGA+GGG + chr1_3:59007397-59007416 Msa0129190:CDS 45.0%
AAAACGGGGCAGTGCAAATT+TGG + chr1_3:59007592-59007611 Msa0129190:CDS 45.0%
ACATATGAACCGGGTAACAC+AGG - chr1_3:59007769-59007788 None:intergenic 45.0%
ACCCGGTTCATATGTACAAG+GGG + chr1_3:59007774-59007793 Msa0129190:CDS 45.0%
AGCCCCTTGTACATATGAAC+CGG - chr1_3:59007779-59007798 None:intergenic 45.0%
TAAGGACTCCATCCAGGAAA+TGG - chr1_3:59007835-59007854 None:intergenic 45.0%
TCCTGGATGGAGTCCTTATT+CGG + chr1_3:59007837-59007856 Msa0129190:CDS 45.0%
GTTGGGGCTACTTCTCTTTA+CGG + chr1_3:59008013-59008032 Msa0129190:CDS 45.0%
CCTGTCGATATCATCATCCA+CGG + chr1_3:59008206-59008225 Msa0129190:CDS 45.0%
CTGTCGATATCATCATCCAC+GGG + chr1_3:59008207-59008226 Msa0129190:CDS 45.0%
AGACCAAAGGGACTAAGAAG+TGG - chr1_3:59008250-59008269 None:intergenic 45.0%
AACAAGTTAGACACCAGGCA+GGG - chr1_3:59008546-59008565 None:intergenic 45.0%
! AGAGTTGGCCCTTGATAACA+TGG + chr1_3:59008649-59008668 Msa0129190:intron 45.0%
GCCAAGTATACACACTAACC+TGG + chr1_3:59008768-59008787 Msa0129190:intron 45.0%
TACAGCAATCTCACCAAACC+AGG - chr1_3:59008789-59008808 None:intergenic 45.0%
!! TGGTTTGGTGAGATTGCTGT+AGG + chr1_3:59008788-59008807 Msa0129190:intron 45.0%
GATATGGGGAAACAGCCATA+AGG - chr1_3:59008907-59008926 None:intergenic 45.0%
! GTGGTGCTAAAACTCTGCAT+TGG + chr1_3:59009009-59009028 Msa0129190:intron 45.0%
! GACTACCTGTTTCTCACTGT+TGG + chr1_3:59009117-59009136 Msa0129190:intron 45.0%
AGTTCCCAACAGTGAGAAAC+AGG - chr1_3:59009125-59009144 None:intergenic 45.0%
GTTTCTCACTGTTGGGAACT+TGG + chr1_3:59009125-59009144 Msa0129190:intron 45.0%
CTTCCCAATTGATCCTAGGA+AGG + chr1_3:59009393-59009412 Msa0129190:intron 45.0%
!! AAGCTTTTGTTTGAGGGAGC+CGG - chr1_3:59009481-59009500 None:intergenic 45.0%
GCTCCCTCAAACAAAAGCTT+GGG + chr1_3:59009481-59009500 Msa0129190:intron 45.0%
!! CAGACCCAAGCTTTTGTTTG+AGG - chr1_3:59009488-59009507 None:intergenic 45.0%
GAAGCCATGATACCATGTCA+AGG + chr1_3:59009586-59009605 Msa0129190:intron 45.0%
TGGTCCTTGACATGGTATCA+TGG - chr1_3:59009593-59009612 None:intergenic 45.0%
!! TTGGTGTCATAGCATGGTTG+AGG + chr1_3:59009987-59010006 Msa0129190:intron 45.0%
!! TGGTGTCATAGCATGGTTGA+GGG + chr1_3:59009988-59010007 Msa0129190:intron 45.0%
GGTTGAGGGGATATGAAACA+TGG + chr1_3:59010002-59010021 Msa0129190:intron 45.0%
TGGCTACAACAAAAGCGATG+TGG + chr1_3:59010022-59010041 Msa0129190:intron 45.0%
!! ATCGTTTTTGCCCCTCTTAC+AGG + chr1_3:59010080-59010099 Msa0129190:intron 45.0%
!! TCGTTTTTGCCCCTCTTACA+GGG + chr1_3:59010081-59010100 Msa0129190:intron 45.0%
TCAAAAGTCCCCTGTAAGAG+GGG - chr1_3:59010093-59010112 None:intergenic 45.0%
CATCAAAAGTCCCCTGTAAG+AGG - chr1_3:59010095-59010114 None:intergenic 45.0%
! CTCTTACAGGGGACTTTTGA+TGG + chr1_3:59010093-59010112 Msa0129190:intron 45.0%
! CAAAATGGGCACTGCAAGTT+TGG + chr1_3:59010391-59010410 Msa0129190:CDS 45.0%
TGCAAGTTTGATCATCCTGC+GGG + chr1_3:59010421-59010440 Msa0129190:CDS 45.0%
AGTAAAGACCCAACTGGGTA+TGG - chr1_3:59010499-59010518 None:intergenic 45.0%
CTGAAGATGTTGAAGGAACC+AGG - chr1_3:59010528-59010547 None:intergenic 45.0%
TTGGATCCTGACTTCAGTTC+AGG - chr1_3:59010559-59010578 None:intergenic 45.0%
TCAGCCAGAATGCATTCATC+TGG + chr1_3:59010586-59010605 Msa0129190:CDS 45.0%
!! AATGGTTCTGGTACCTCTGT+TGG + chr1_3:59010610-59010629 Msa0129190:CDS 45.0%
CGTTCAAAGAAGCAGAACTC+TGG - chr1_3:59010690-59010709 None:intergenic 45.0%
AGCATGAACAGAAGCAATGG+TGG - chr1_3:59010798-59010817 None:intergenic 45.0%
! AGGAGCATGAACAGAAGCAA+TGG - chr1_3:59010801-59010820 None:intergenic 45.0%
!!! ATTTTGTAATTTATTAATTA+GGG + chr1_3:59006566-59006585 Msa0129190:intron 5.0%
!! TATATTTACTATTTAATAAA+AGG + chr1_3:59007294-59007313 Msa0129190:intron 5.0%
!! ATATTTACTATTTAATAAAA+GGG + chr1_3:59007295-59007314 Msa0129190:intron 5.0%
CACACGAACGAGAGAACACA+AGG + chr1_3:59006213-59006232 Msa0129190:five_prime_UTR 50.0%
!! GGTTGGATCCGTTTCTAGTG+GGG - chr1_3:59006435-59006454 None:intergenic 50.0%
!! GGGTTGGATCCGTTTCTAGT+GGG - chr1_3:59006436-59006455 None:intergenic 50.0%
GAATCTTACCCGGAGAGACA+TGG + chr1_3:59006655-59006674 Msa0129190:CDS 50.0%
TTCGGTACACCATGTCTCTC+CGG - chr1_3:59006667-59006686 None:intergenic 50.0%
!! ACCGGGTTTTGTGGATATGG+TGG + chr1_3:59006706-59006725 Msa0129190:CDS 50.0%
GATCACGCGGGTGATTGAAA+CGG - chr1_3:59006738-59006757 None:intergenic 50.0%
CTGCTGCAGTAAGAGCTACA+GGG + chr1_3:59007184-59007203 Msa0129190:CDS 50.0%
TGCTGCAGTAAGAGCTACAG+GGG + chr1_3:59007185-59007204 Msa0129190:CDS 50.0%
CCACCATCCCAAAAATGGAG+GGG + chr1_3:59007398-59007417 Msa0129190:CDS 50.0%
CACCATCCCAAAAATGGAGG+GGG + chr1_3:59007399-59007418 Msa0129190:CDS 50.0%
!! ATCCCCCTCCATTTTTGGGA+TGG - chr1_3:59007404-59007423 None:intergenic 50.0%
AGAGTCGAACCGGTCGTAAT+GGG - chr1_3:59007461-59007480 None:intergenic 50.0%
AAGAGTCGAACCGGTCGTAA+TGG - chr1_3:59007462-59007481 None:intergenic 50.0%
! AATGAAGTGCCAGCAGGTTG+AGG - chr1_3:59007640-59007659 None:intergenic 50.0%
TCAACAGGTGCAGTCTCCAA+CGG + chr1_3:59007684-59007703 Msa0129190:CDS 50.0%
GAAGCTCCTCCAAACTGTTC+CGG - chr1_3:59007721-59007740 None:intergenic 50.0%
AGCTTCTGCAAGTGTGAGAG+TGG + chr1_3:59007735-59007754 Msa0129190:CDS 50.0%
TATGAACCGGGTAACACAGG+AGG - chr1_3:59007766-59007785 None:intergenic 50.0%
GCCCCTTGTACATATGAACC+GGG - chr1_3:59007778-59007797 None:intergenic 50.0%
AGGAAATGGAACAACCCCTG+GGG - chr1_3:59007821-59007840 None:intergenic 50.0%
CAGGAAATGGAACAACCCCT+GGG - chr1_3:59007822-59007841 None:intergenic 50.0%
GGGTTGTTCCATTTCCTGGA+TGG + chr1_3:59007824-59007843 Msa0129190:CDS 50.0%
ACCGAATAAGGACTCCATCC+AGG - chr1_3:59007841-59007860 None:intergenic 50.0%
GGAGATAACACAGGGCTTAC+AGG - chr1_3:59007977-59007996 None:intergenic 50.0%
GTAAGCCCTGTGTTATCTCC+TGG + chr1_3:59007977-59007996 Msa0129190:CDS 50.0%
! GAAGAGGGCAGAGGAGTATA+AGG - chr1_3:59008079-59008098 None:intergenic 50.0%
CCTGAAGTGTGTTTCCTCCA+GGG - chr1_3:59008108-59008127 None:intergenic 50.0%
TCCTGAAGTGTGTTTCCTCC+AGG - chr1_3:59008109-59008128 None:intergenic 50.0%
CCGTGGATGATGATATCGAC+AGG - chr1_3:59008209-59008228 None:intergenic 50.0%
ATATCATCATCCACGGGACC+AGG + chr1_3:59008213-59008232 Msa0129190:CDS 50.0%
CGACCACTTCTTAGTCCCTT+TGG + chr1_3:59008244-59008263 Msa0129190:CDS 50.0%
TTAAGACCAATGTCCCTGCC+TGG + chr1_3:59008530-59008549 Msa0129190:intron 50.0%
CAACAAGTTAGACACCAGGC+AGG - chr1_3:59008547-59008566 None:intergenic 50.0%
CAGGCAACAAGTTAGACACC+AGG - chr1_3:59008551-59008570 None:intergenic 50.0%
AATGCAACTAAAGCCAGCGC+AGG - chr1_3:59008570-59008589 None:intergenic 50.0%
!! TGCGCTGGCTTTAGTTGCAT+TGG + chr1_3:59008569-59008588 Msa0129190:intron 50.0%
!! GCGCTGGCTTTAGTTGCATT+GGG + chr1_3:59008570-59008589 Msa0129190:intron 50.0%
!! CGCTGGCTTTAGTTGCATTG+GGG + chr1_3:59008571-59008590 Msa0129190:intron 50.0%
TACGCACGAGTAATCCTACG+AGG - chr1_3:59008694-59008713 None:intergenic 50.0%
GGGAAACAGCCATAAGGATG+GGG - chr1_3:59008901-59008920 None:intergenic 50.0%
GGGGAAACAGCCATAAGGAT+GGG - chr1_3:59008902-59008921 None:intergenic 50.0%
TGGGGAAACAGCCATAAGGA+TGG - chr1_3:59008903-59008922 None:intergenic 50.0%
TCTTAGCTCCATCATGTCGG+TGG + chr1_3:59008982-59009001 Msa0129190:intron 50.0%
TGCATTGGAGTTCCCCTTTG+TGG + chr1_3:59009024-59009043 Msa0129190:intron 50.0%
GCATTGGAGTTCCCCTTTGT+GGG + chr1_3:59009025-59009044 Msa0129190:intron 50.0%
GGCTCCCTCAAACAAAAGCT+TGG + chr1_3:59009480-59009499 Msa0129190:intron 50.0%
! AGGAGAGTTGGTCCTTGACA+TGG - chr1_3:59009601-59009620 None:intergenic 50.0%
!! GCTTGGTTGGTGTCATAGCA+TGG + chr1_3:59009981-59010000 Msa0129190:intron 50.0%
! GGTGTCATAGCATGGTTGAG+GGG + chr1_3:59009989-59010008 Msa0129190:intron 50.0%
! CGTTTTTGCCCCTCTTACAG+GGG + chr1_3:59010082-59010101 Msa0129190:intron 50.0%
GCAAGTTTGATCATCCTGCG+GGG + chr1_3:59010422-59010441 Msa0129190:CDS 50.0%
CAGTTGCTCCATACCCAGTT+GGG + chr1_3:59010488-59010507 Msa0129190:CDS 50.0%
TTTCGGCCTGAACTGAAGTC+AGG + chr1_3:59010550-59010569 Msa0129190:CDS 50.0%
! CTCGACTCGACGAGGAAGTT+AGG + chr1_3:59006274-59006293 Msa0129190:five_prime_UTR 55.0%
! CGGGTTGGATCCGTTTCTAG+TGG - chr1_3:59006437-59006456 None:intergenic 55.0%
AGAGCAGTAGCATCAGCAGC+AGG - chr1_3:59006484-59006503 None:intergenic 55.0%
GCTGCTGATGCTACTGCTCT+TGG + chr1_3:59006484-59006503 Msa0129190:CDS 55.0%
GCTGATGCTACTGCTCTTGG+AGG + chr1_3:59006487-59006506 Msa0129190:CDS 55.0%
TCGGTACACCATGTCTCTCC+GGG - chr1_3:59006666-59006685 None:intergenic 55.0%
ATTACCGCAGCACGATCACG+CGG - chr1_3:59006751-59006770 None:intergenic 55.0%
GCTGCTGCAGTAAGAGCTAC+AGG + chr1_3:59007183-59007202 Msa0129190:CDS 55.0%
AAGAGCTACAGGGGACTACC+CGG + chr1_3:59007194-59007213 Msa0129190:CDS 55.0%
!!! CCCCTCCATTTTTGGGATGG+TGG - chr1_3:59007401-59007420 None:intergenic 55.0%
TTCCACCATCCTCAACCTGC+TGG + chr1_3:59007628-59007647 Msa0129190:CDS 55.0%
! AAGTGCCAGCAGGTTGAGGA+TGG - chr1_3:59007636-59007655 None:intergenic 55.0%
GCTAGACCTCCTGTGTTACC+CGG + chr1_3:59007757-59007776 Msa0129190:CDS 55.0%
AACCCCTGGGGAAAGAAGCA+CGG - chr1_3:59007809-59007828 None:intergenic 55.0%
CCAGGAAATGGAACAACCCC+TGG - chr1_3:59007823-59007842 None:intergenic 55.0%
CCAGGGGTTGTTCCATTTCC+TGG + chr1_3:59007820-59007839 Msa0129190:CDS 55.0%
AGAGAAGTAGCCCCAACAGC+AGG - chr1_3:59008010-59008029 None:intergenic 55.0%
CCCTGGAGGAAACACACTTC+AGG + chr1_3:59008105-59008124 Msa0129190:CDS 55.0%
TCCTGAAAGACCCGGTGAAC+CGG + chr1_3:59008138-59008157 Msa0129190:CDS 55.0%
! TATTGGCAGACCGGTTCACC+GGG - chr1_3:59008151-59008170 None:intergenic 55.0%
! GTATTGGCAGACCGGTTCAC+CGG - chr1_3:59008152-59008171 None:intergenic 55.0%
GGGCGTAGAGGAAGACCAAA+GGG - chr1_3:59008262-59008281 None:intergenic 55.0%
! CTTTGGTCTTCCTCTACGCC+CGG + chr1_3:59008261-59008280 Msa0129190:CDS 55.0%
TCCTCTACGCCCGGTATGAA+TGG + chr1_3:59008270-59008289 Msa0129190:intron 55.0%
ACCATTCATACCGGGCGTAG+AGG - chr1_3:59008274-59008293 None:intergenic 55.0%
TAGACACCAGGCAGGGACAT+TGG - chr1_3:59008539-59008558 None:intergenic 55.0%
!! GTCTAACTTGTTGCCTGCGC+TGG + chr1_3:59008554-59008573 Msa0129190:intron 55.0%
CTGTATCTCATTGACCCCGC+AGG - chr1_3:59010439-59010458 None:intergenic 55.0%
CCAACTGGGTATGGAGCAAC+TGG - chr1_3:59010490-59010509 None:intergenic 55.0%
CCAGTTGCTCCATACCCAGT+TGG + chr1_3:59010487-59010506 Msa0129190:CDS 55.0%
AGCAGAAGCAGCAGACAGAG+TGG + chr1_3:59010712-59010731 Msa0129190:CDS 55.0%
! CTGTCTCTCTCGACTCGACG+AGG + chr1_3:59006266-59006285 Msa0129190:five_prime_UTR 60.0%
GGTCGGAGCCCCACTAGAAA+CGG + chr1_3:59006424-59006443 Msa0129190:CDS 60.0%
TTACCGCAGCACGATCACGC+GGG - chr1_3:59006750-59006769 None:intergenic 60.0%
GCTTGGCGAACCTCCATGTC+AGG + chr1_3:59007221-59007240 Msa0129190:CDS 60.0%
! TGCCAGCAGGTTGAGGATGG+TGG - chr1_3:59007633-59007652 None:intergenic 60.0%
! GCTGGCAATGAAGTGCCAGC+AGG - chr1_3:59007646-59007665 None:intergenic 60.0%
TCCAACGGTTCCTCCTCTGC+CGG + chr1_3:59007699-59007718 Msa0129190:CDS 60.0%
CCAAACTGTTCCGGCAGAGG+AGG - chr1_3:59007712-59007731 None:intergenic 60.0%
CCTCCTCTGCCGGAACAGTT+TGG + chr1_3:59007709-59007728 Msa0129190:CDS 60.0%
CCTCCAAACTGTTCCGGCAG+AGG - chr1_3:59007715-59007734 None:intergenic 60.0%
CCTCTGCCGGAACAGTTTGG+AGG + chr1_3:59007712-59007731 Msa0129190:CDS 60.0%
GTCCCGTGCTTCTTTCCCCA+GGG + chr1_3:59007803-59007822 Msa0129190:CDS 60.0%
TCCCGTGCTTCTTTCCCCAG+GGG + chr1_3:59007804-59007823 Msa0129190:CDS 60.0%
! ACCCCTGGGGAAAGAAGCAC+GGG - chr1_3:59007808-59007827 None:intergenic 60.0%
GCGCGCCAGGAGATAACACA+GGG - chr1_3:59007985-59008004 None:intergenic 60.0%
TGCGCGCCAGGAGATAACAC+AGG - chr1_3:59007986-59008005 None:intergenic 60.0%
ACTCCTCTGCCCTCTTCTCC+TGG + chr1_3:59008082-59008101 Msa0129190:CDS 60.0%
AGTGTGTTTCCTCCAGGGCC+AGG - chr1_3:59008103-59008122 None:intergenic 60.0%
! ACCGGTTCACCGGGTCTTTC+AGG - chr1_3:59008142-59008161 None:intergenic 60.0%
GAAGTGGTCGTGCAGCAACC+TGG - chr1_3:59008234-59008253 None:intergenic 60.0%
CGGGCGTAGAGGAAGACCAA+AGG - chr1_3:59008263-59008282 None:intergenic 60.0%
CCACAGCACCACCGACATGA+TGG - chr1_3:59008993-59009012 None:intergenic 60.0%
! CCATCATGTCGGTGGTGCTG+TGG + chr1_3:59008990-59009009 Msa0129190:intron 60.0%
GGTGGGTCTGTCTCACTGTC+TGG + chr1_3:59010649-59010668 Msa0129190:CDS 60.0%
TCACCCGCGTGATCGTGCTG+CGG + chr1_3:59006744-59006763 Msa0129190:CDS 65.0%
CTACAGGGGACTACCCGGAG+AGG + chr1_3:59007199-59007218 Msa0129190:CDS 65.0%
GAGGTTCGCCAAGCCTCTCC+GGG - chr1_3:59007215-59007234 None:intergenic 65.0%
GGAGGTTCGCCAAGCCTCTC+CGG - chr1_3:59007216-59007235 None:intergenic 65.0%
TCCGGCAGAGGAGGAACCGT+TGG - chr1_3:59007703-59007722 None:intergenic 65.0%
GGTCCCGTGCTTCTTTCCCC+AGG + chr1_3:59007802-59007821 Msa0129190:CDS 65.0%
CTGGCGCGCAACCTGCTGTT+GGG + chr1_3:59007996-59008015 Msa0129190:CDS 65.0%
TGGCGCGCAACCTGCTGTTG+GGG + chr1_3:59007997-59008016 Msa0129190:CDS 65.0%
CCTCCAGGGCCAGGAGAAGA+GGG - chr1_3:59008094-59008113 None:intergenic 65.0%
TCCTCCAGGGCCAGGAGAAG+AGG - chr1_3:59008095-59008114 None:intergenic 65.0%
GGGGACTACCCGGAGAGGCT+TGG + chr1_3:59007204-59007223 Msa0129190:CDS 70.0%
CCAACAGCAGGTTGCGCGCC+AGG - chr1_3:59007998-59008017 None:intergenic 70.0%
CCTGGCGCGCAACCTGCTGT+TGG + chr1_3:59007995-59008014 Msa0129190:CDS 70.0%
GGGCCAGGAGAAGAGGGCAG+AGG - chr1_3:59008088-59008107 None:intergenic 70.0%
CTGCCCTCTTCTCCTGGCCC+TGG + chr1_3:59008088-59008107 Msa0129190:CDS 70.0%
CCCTCTTCTCCTGGCCCTGG+AGG + chr1_3:59008091-59008110 Msa0129190:CDS 70.0%
CGTGCAGCAACCTGGTCCCG+TGG - chr1_3:59008226-59008245 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59006113 59011102 59006113 ID=Msa0129190;Name=Msa0129190
chr1_3 mRNA 59006113 59011102 59006113 ID=Msa0129190-mRNA-1;Parent=Msa0129190;Name=Msa0129190-mRNA-1;_AED=0.20;_eAED=0.20;_QI=277|1|1|1|0.57|0.62|8|355|472
chr1_3 exon 59006113 59006185 59006113 ID=Msa0129190-mRNA-1:exon:19152;Parent=Msa0129190-mRNA-1
chr1_3 exon 59006208 59006508 59006208 ID=Msa0129190-mRNA-1:exon:19153;Parent=Msa0129190-mRNA-1
chr1_3 exon 59006617 59006765 59006617 ID=Msa0129190-mRNA-1:exon:19154;Parent=Msa0129190-mRNA-1
chr1_3 exon 59007180 59007242 59007180 ID=Msa0129190-mRNA-1:exon:19155;Parent=Msa0129190-mRNA-1
chr1_3 exon 59007351 59007470 59007351 ID=Msa0129190-mRNA-1:exon:19156;Parent=Msa0129190-mRNA-1
chr1_3 exon 59007565 59007858 59007565 ID=Msa0129190-mRNA-1:exon:19157;Parent=Msa0129190-mRNA-1
chr1_3 exon 59007971 59008282 59007971 ID=Msa0129190-mRNA-1:exon:19158;Parent=Msa0129190-mRNA-1
chr1_3 exon 59010364 59011102 59010364 ID=Msa0129190-mRNA-1:exon:19159;Parent=Msa0129190-mRNA-1
chr1_3 five_prime_UTR 59006113 59006185 59006113 ID=Msa0129190-mRNA-1:five_prime_utr;Parent=Msa0129190-mRNA-1
chr1_3 five_prime_UTR 59006208 59006411 59006208 ID=Msa0129190-mRNA-1:five_prime_utr;Parent=Msa0129190-mRNA-1
chr1_3 CDS 59006412 59006508 59006412 ID=Msa0129190-mRNA-1:cds;Parent=Msa0129190-mRNA-1
chr1_3 CDS 59006617 59006765 59006617 ID=Msa0129190-mRNA-1:cds;Parent=Msa0129190-mRNA-1
chr1_3 CDS 59007180 59007242 59007180 ID=Msa0129190-mRNA-1:cds;Parent=Msa0129190-mRNA-1
chr1_3 CDS 59007351 59007470 59007351 ID=Msa0129190-mRNA-1:cds;Parent=Msa0129190-mRNA-1
chr1_3 CDS 59007565 59007858 59007565 ID=Msa0129190-mRNA-1:cds;Parent=Msa0129190-mRNA-1
chr1_3 CDS 59007971 59008282 59007971 ID=Msa0129190-mRNA-1:cds;Parent=Msa0129190-mRNA-1
chr1_3 CDS 59010364 59010747 59010364 ID=Msa0129190-mRNA-1:cds;Parent=Msa0129190-mRNA-1
chr1_3 three_prime_UTR 59010748 59011102 59010748 ID=Msa0129190-mRNA-1:three_prime_utr;Parent=Msa0129190-mRNA-1
Gene Sequence

>Msa0129190

ATGGACTTGTACGGTCGGAGCCCCACTAGAAACGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCTGCTGCTGATGCTACTGCTCTTGGAGAGTCGATGTGGCATTTATCACTTGGTGGTGGTGGTGTTGAATCTTACCCGGAGAGACATGGTGTACCGAATTGTGCTTATTATATGAGAACCGGGTTTTGTGGATATGGTGGAAGGTGCCGTTTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGACTACCCGGAGAGGCTTGGCGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCTTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGCGAGAGTGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACTTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACGGTTCCTCCTCTGCCGGAACAGTTTGGAGGAGCTTCTGCAAGTGTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCCGTGCTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTTTACGGAGTAACTCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGGAGGAAACACACTTCAGGAAAAAGTATTTCCTGAAAGACCCGGTGAACCGGTCTGCCAATACTATATGAGAACTGGGGACTGTAAATTTGGATTAGCCTGTCGATATCATCATCCACGGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATATACAAAATGGGCACTGCAAGTTTGGCTCGACATGCAAGTTTGATCATCCTGCGGGGTCAATGAGATACAGTCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCATACCCAGTTGGGTCTTTACTATCTAACCTGGTTCCTTCAACATCTTCAGAATTTCGGCCTGAACTGAAGTCAGGATCCAATTCCTTTTCAGCCAGAATGCATTCATCTGGAAATGGTTCTGGTACCTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGCCAGAGTTCTGCTTCTTTGAACGGTAGCAGAAGCAGCAGACAGAGTGGTGAGATACATTGA
Protein sequence

>Msa0129190

MDLYGRSPTRNGSNPLNQHEWRSPAADATALGESMWHLSLGGGGVESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPGGNTLQEKVFPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPLRPGVQPCSFYIQNGHCKFGSTCKFDHPAGSMRYSPSASSLIDVPVAPYPVGSLLSNLVPSTSSEFRPELKSGSNSFSARMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSSQSSASLNGSRSSRQSGEIH*