Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845550 | XP_003613762.1 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 1.98e-78 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845550 | sp|P40590|RL34_PEA | 95.798 | 119 | 5 | 0 | 1 | 119 | 1 | 119 | 1.92e-77 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845550 | G7KF74 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 9.48e-79 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032810 | Msa0845550 | 0.858871 | 6.116198e-63 | -8.615850e-47 |
| Msa0038090 | Msa0845550 | 0.802612 | 5.164132e-49 | -8.615850e-47 |
| Msa0615580 | Msa0845550 | 0.846440 | 2.169620e-59 | -8.615850e-47 |
| Msa0666230 | Msa0845550 | 0.825953 | 3.537623e-54 | -8.615850e-47 |
| Msa0751010 | Msa0845550 | 0.812114 | 4.988114e-51 | -8.615850e-47 |
| Msa0766080 | Msa0845550 | 0.840030 | 1.111070e-57 | -8.615850e-47 |
| Msa0781080 | Msa0845550 | 0.824890 | 6.317074e-54 | -8.615850e-47 |
| Msa0806880 | Msa0845550 | 0.803084 | 4.126484e-49 | -8.615850e-47 |
| Msa0827380 | Msa0845550 | 0.821743 | 3.432669e-53 | -8.615850e-47 |
| Msa0188350 | Msa0845550 | 0.809784 | 1.594418e-50 | -8.615850e-47 |
| Msa0219120 | Msa0845550 | 0.817317 | 3.510529e-52 | -8.615850e-47 |
| Msa0230490 | Msa0845550 | 0.801684 | 8.015714e-49 | -8.615850e-47 |
| Msa0230520 | Msa0845550 | 0.850383 | 1.759100e-60 | -8.615850e-47 |
| Msa0231100 | Msa0845550 | 0.801847 | 7.421032e-49 | -8.615850e-47 |
| Msa0443390 | Msa0845550 | 0.821526 | 3.853455e-53 | -8.615850e-47 |
| Msa0258850 | Msa0845550 | 0.821588 | 3.727750e-53 | -8.615850e-47 |
| Msa0262480 | Msa0845550 | 0.810797 | 9.640310e-51 | -8.615850e-47 |
| Msa0281530 | Msa0845550 | 0.803549 | 3.306244e-49 | -8.615850e-47 |
| Msa0296250 | Msa0845550 | 0.839681 | 1.369662e-57 | -8.615850e-47 |
| Msa0298200 | Msa0845550 | 0.817620 | 3.000142e-52 | -8.615850e-47 |
| Msa0317910 | Msa0845550 | 0.800807 | 1.212040e-48 | -8.615850e-47 |
| Msa0320590 | Msa0845550 | 0.807289 | 5.436359e-50 | -8.615850e-47 |
| Msa0332640 | Msa0845550 | 0.821712 | 3.490713e-53 | -8.615850e-47 |
| Msa0348830 | Msa0845550 | 0.822422 | 2.389331e-53 | -8.615850e-47 |
| Msa0527020 | Msa0845550 | 0.800153 | 1.647341e-48 | -8.615850e-47 |
| Msa0531650 | Msa0845550 | 0.802391 | 5.737048e-49 | -8.615850e-47 |
| Msa0534750 | Msa0845550 | 0.816914 | 4.324757e-52 | -8.615850e-47 |
| Msa0584260 | Msa0845550 | 0.821455 | 4.001534e-53 | -8.615850e-47 |
| Msa0845550 | Msa0892640 | 0.819361 | 1.209452e-52 | -8.615850e-47 |
| Msa0845550 | Msa1060260 | 0.806052 | 9.919519e-50 | -8.615850e-47 |
| Msa0845550 | Msa1127590 | 0.810853 | 9.374818e-51 | -8.615850e-47 |
| Msa0845550 | Msa1262890 | 0.806990 | 6.287981e-50 | -8.615850e-47 |
| Msa0845550 | Msa1275680 | 0.819013 | 1.451189e-52 | -8.615850e-47 |
| Msa0845550 | Msa1406080 | 0.852859 | 3.501790e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845550 | MtrunA17_Chr5g0417101 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 1.82e-82 | 236 |
| Msa0845550 | MtrunA17_Chr7g0217171 | 95.833 | 120 | 5 | 0 | 1 | 120 | 1 | 120 | 7.72e-80 | 230 |
| Msa0845550 | MtrunA17_Chr8g0361721 | 95.833 | 120 | 5 | 0 | 1 | 120 | 1 | 120 | 5.22e-79 | 228 |
| Msa0845550 | MtrunA17_Chr7g0217651 | 75.510 | 49 | 12 | 0 | 1 | 49 | 1 | 49 | 2.09e-21 | 80.5 |
| Msa0845550 | MtrunA17_Chr8g0343321 | 74.510 | 51 | 12 | 1 | 66 | 115 | 66 | 116 | 1.23e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845550 | AT1G26880.1 | 92.500 | 120 | 9 | 0 | 1 | 120 | 1 | 120 | 6.55e-77 | 223 |
| Msa0845550 | AT1G69620.1 | 92.437 | 119 | 9 | 0 | 1 | 119 | 1 | 119 | 4.88e-76 | 221 |
| Msa0845550 | AT3G28900.1 | 87.500 | 120 | 15 | 0 | 1 | 120 | 1 | 120 | 7.37e-73 | 213 |
| Msa0845550 | AT1G26880.2 | 91.304 | 92 | 8 | 0 | 1 | 92 | 1 | 92 | 9.03e-58 | 174 |
Find 56 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGTTAATTGTGTCTTAT+TGG | 0.127608 | 5_4:-24804285 | Msa0845550:three_prime_UTR |
| CCTCACCGCTGAGCTTATTT+AGG | 0.181118 | 5_4:+24806505 | None:intergenic |
| TGAATTCTCTTGCCAGTAAC+AGG | 0.250617 | 5_4:+24806216 | None:intergenic |
| TAGGATCATTAGGGCTTTCT+TGG | 0.253359 | 5_4:-24804474 | Msa0845550:CDS |
| TTTCCTCCAAGGCATAATTT+TGG | 0.254755 | 5_4:-24804394 | Msa0845550:exon |
| CACAAAGGCGCTTAAATTAA+AGG | 0.267541 | 5_4:+24804158 | None:intergenic |
| TCTGGTTCTATAGGATCATT+AGG | 0.302724 | 5_4:-24804484 | Msa0845550:intron |
| AAATCTCTCTCGATCGAAAA+TGG | 0.311288 | 5_4:-24806471 | Msa0845550:exon |
| CTCACCGCTGAGCTTATTTA+GGG | 0.312556 | 5_4:+24806506 | None:intergenic |
| GGACCTAAGTGCCCTGTTAC+TGG | 0.328623 | 5_4:-24806228 | Msa0845550:CDS |
| AACCCTGTGTTGGTTGGATT+TGG | 0.331681 | 5_4:+24806409 | None:intergenic |
| TTCACAGTCCTACGGTTTCT+AGG | 0.342520 | 5_4:+24804637 | None:intergenic |
| AGAGCAAAAGATTGTGAAAA+AGG | 0.358157 | 5_4:-24804447 | Msa0845550:CDS |
| AATGATTGAAAATGAATCAT+AGG | 0.377696 | 5_4:+24803960 | None:intergenic |
| CTTTAATTTAAGCGCCTTTG+TGG | 0.382203 | 5_4:-24804157 | Msa0845550:three_prime_UTR |
| TATTTACAAGCGTTAGATCT+AGG | 0.387504 | 5_4:-24806581 | None:intergenic |
| AGGACTGTGAACCGTGCTTA+TGG | 0.432739 | 5_4:-24804625 | Msa0845550:CDS |
| ATAAGCATACAAACCTTTCC+CGG | 0.437755 | 5_4:+24804578 | None:intergenic |
| AATTCAGAAGGCAAAGGAAA+AGG | 0.455813 | 5_4:-24804417 | Msa0845550:CDS |
| TAAGCTCAGCGGTGAGGTAG+AGG | 0.469223 | 5_4:-24806499 | Msa0845550:five_prime_UTR |
| GTTACTGGCAAGAGAATTCA+AGG | 0.469764 | 5_4:-24806213 | Msa0845550:CDS |
| CTGGAGGTGCTGTCCGGGAA+AGG | 0.484140 | 5_4:-24804591 | Msa0845550:intron |
| TTTGTCTGGAGGTGCTGTCC+GGG | 0.497525 | 5_4:-24804596 | Msa0845550:CDS |
| CTGGTTCTATAGGATCATTA+GGG | 0.498453 | 5_4:-24804483 | Msa0845550:intron |
| TGTGGTCCAAAATTATGCCT+TGG | 0.509286 | 5_4:+24804388 | None:intergenic |
| TTTGACAACCCTGTGTTGGT+TGG | 0.514440 | 5_4:+24806403 | None:intergenic |
| TTGCCAGTAACAGGGCACTT+AGG | 0.518732 | 5_4:+24806225 | None:intergenic |
| CTACAGAATACAAGAGATCA+AGG | 0.519893 | 5_4:-24804663 | Msa0845550:CDS |
| CTTGATCTCTTGTATTCTGT+AGG | 0.521476 | 5_4:+24804664 | None:intergenic |
| GGTCCAAAATTATGCCTTGG+AGG | 0.525568 | 5_4:+24804391 | None:intergenic |
| GCTTAAATTAAAGGTACTAC+TGG | 0.534907 | 5_4:+24804167 | None:intergenic |
| AATTAAAGGTACTACTGGTA+AGG | 0.548654 | 5_4:+24804172 | None:intergenic |
| CACAGGGTTGTCAAAACCCC+TGG | 0.556629 | 5_4:-24806395 | Msa0845550:intron |
| CAACCAAATCCAACCAACAC+AGG | 0.569419 | 5_4:-24806412 | Msa0845550:CDS |
| ACTACTAAGAAGAGAGCTAG+TGG | 0.569876 | 5_4:-24806249 | Msa0845550:CDS |
| CAATAAGACACAATTAACAT+AGG | 0.581454 | 5_4:+24804286 | None:intergenic |
| AAAGGAAAAGGTTTCCTCCA+AGG | 0.589566 | 5_4:-24804405 | Msa0845550:CDS |
| AAAGGTCCTCAAAATTCAGA+AGG | 0.596465 | 5_4:-24804429 | Msa0845550:CDS |
| AATTGCAGATTCCACACTTG+AGG | 0.607246 | 5_4:-24804687 | Msa0845550:intron |
| GAATTCTCTTGCCAGTAACA+GGG | 0.607451 | 5_4:+24806217 | None:intergenic |
| GTAGCTGTGACGACGGCGAT+AGG | 0.621925 | 5_4:+24806436 | None:intergenic |
| CCTCAAAATTCAGAAGGCAA+AGG | 0.629318 | 5_4:-24804423 | Msa0845550:CDS |
| AACCAAATCCAACCAACACA+GGG | 0.630763 | 5_4:-24806411 | Msa0845550:CDS |
| CCTAAATAAGCTCAGCGGTG+AGG | 0.635693 | 5_4:-24806505 | Msa0845550:five_prime_UTR |
| AATTCAAAACTGTATCACAA+TGG | 0.638663 | 5_4:+24804227 | None:intergenic |
| TGGTTGCGTAGCTGTGACGA+CGG | 0.639865 | 5_4:+24806429 | None:intergenic |
| ACAGATAAACTTCAATTGTG+CGG | 0.643283 | 5_4:+24804117 | None:intergenic |
| AAGCACGGTTCACAGTCCTA+CGG | 0.644276 | 5_4:+24804629 | None:intergenic |
| ACTGTGAACCGTGCTTATGG+TGG | 0.651912 | 5_4:-24804622 | Msa0845550:CDS |
| TATTCTGTAGGCCTCAAGTG+TGG | 0.652032 | 5_4:+24804676 | None:intergenic |
| AAACTCAACAATAAGCCGCA+AGG | 0.652032 | 5_4:+24806538 | None:intergenic |
| CAAGGCTGCCTAGAAACCGT+AGG | 0.654689 | 5_4:-24804645 | Msa0845550:CDS |
| ACAAAACTCCACCATAAGCA+CGG | 0.670068 | 5_4:+24804614 | None:intergenic |
| TGGTAAGGTACAGTAACACA+AGG | 0.689879 | 5_4:+24804187 | None:intergenic |
| GACTTAGAAAATAACCACAA+AGG | 0.691297 | 5_4:+24804143 | None:intergenic |
| AAAACCCTAAATAAGCTCAG+CGG | 0.755747 | 5_4:-24806510 | Msa0845550:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAATTTTATCATTTTTCT+TGG | + | chr5_4:24804964-24804983 | None:intergenic | 15.0% |
| !! | CAAGAAAAATGATAAAATTA+TGG | - | chr5_4:24804962-24804981 | Msa0845550:intron | 15.0% |
| !!! | TAATATTGATTAAAAAGGTT+GGG | + | chr5_4:24805304-24805323 | None:intergenic | 15.0% |
| !!! | TATTATATGTTTCTTACTTT+TGG | - | chr5_4:24805790-24805809 | Msa0845550:intron | 15.0% |
| !! | AAGTATACATAAGAAATTAT+TGG | + | chr5_4:24806494-24806513 | None:intergenic | 15.0% |
| !! | AAATTGAAATTTACTTACCA+GGG | + | chr5_4:24804168-24804187 | None:intergenic | 20.0% |
| !!! | GATTTGTTATGTTTTGAAAT+TGG | - | chr5_4:24804218-24804237 | Msa0845550:three_prime_UTR | 20.0% |
| !! | TAATGTAACATGATAAATCA+AGG | + | chr5_4:24804434-24804453 | None:intergenic | 20.0% |
| !! | CAACATAAAACTATAAACAA+TGG | + | chr5_4:24804502-24804521 | None:intergenic | 20.0% |
| !!! | TAGTTTTATGTTGTGATTTA+TGG | - | chr5_4:24804509-24804528 | Msa0845550:intron | 20.0% |
| !!! | AGTTTGAAATAAACATCATA+CGG | + | chr5_4:24804929-24804948 | None:intergenic | 20.0% |
| !! | CAAAACACGTTAAAATATTT+CGG | - | chr5_4:24805072-24805091 | Msa0845550:intron | 20.0% |
| !!! | GTAATATTGATTAAAAAGGT+TGG | + | chr5_4:24805305-24805324 | None:intergenic | 20.0% |
| !! | TGGTCATATATTAAAAAACA+CGG | + | chr5_4:24805327-24805346 | None:intergenic | 20.0% |
| !! | AATCAAGTAAAATTGTTAAC+TGG | + | chr5_4:24805347-24805366 | None:intergenic | 20.0% |
| !! | TGTTCATATAATAAGAAACA+TGG | + | chr5_4:24805557-24805576 | None:intergenic | 20.0% |
| !! | AATCTAATTATATTTGTCTC+TGG | - | chr5_4:24806041-24806060 | Msa0845550:intron | 20.0% |
| !!! | AAATGAGATAACAATCTTTT+TGG | - | chr5_4:24806178-24806197 | Msa0845550:intron | 20.0% |
| !!! | TTTTGAATTTTCTGGTTTAT+TGG | - | chr5_4:24806330-24806349 | Msa0845550:intron | 20.0% |
| ! | AATTGAAATTTACTTACCAG+GGG | + | chr5_4:24804167-24804186 | None:intergenic | 25.0% |
| ! | GAAATTGAAATTTACTTACC+AGG | + | chr5_4:24804169-24804188 | None:intergenic | 25.0% |
| !!! | ATTTTGTGTTGTTGAAATGT+AGG | - | chr5_4:24804252-24804271 | Msa0845550:three_prime_UTR | 25.0% |
| !!! | ACCTTTAAAACTTGTAAATG+TGG | - | chr5_4:24804632-24804651 | Msa0845550:CDS | 25.0% |
| !!! | ACCACATTTACAAGTTTTAA+AGG | + | chr5_4:24804636-24804655 | None:intergenic | 25.0% |
| !!! | AATATTTTAACGTGTTTTGG+AGG | + | chr5_4:24805071-24805090 | None:intergenic | 25.0% |
| !!! | CGAAATATTTTAACGTGTTT+TGG | + | chr5_4:24805074-24805093 | None:intergenic | 25.0% |
| ! | ACAAATTGAACACAAATATC+TGG | - | chr5_4:24805100-24805119 | Msa0845550:intron | 25.0% |
| !! | AGACATTTGAGTTTATCATA+CGG | - | chr5_4:24805190-24805209 | Msa0845550:intron | 25.0% |
| !! | CACGGTAATATTGATTAAAA+AGG | + | chr5_4:24805309-24805328 | None:intergenic | 25.0% |
| ! | TAGCATTTCAAAAACTAAAC+TGG | + | chr5_4:24805454-24805473 | None:intergenic | 25.0% |
| !! | CTTAATTTTGTTCCAAGTTA+AGG | + | chr5_4:24805503-24805522 | None:intergenic | 25.0% |
| !! | TTGCTTTGTTATAGAATGTT+TGG | - | chr5_4:24805613-24805632 | Msa0845550:intron | 25.0% |
| ! | AGCTCTTACATTTAATGATT+TGG | - | chr5_4:24806003-24806022 | Msa0845550:intron | 25.0% |
| !!! | TAATGATTTGGTTTAATTGC+TGG | - | chr5_4:24806015-24806034 | Msa0845550:intron | 25.0% |
| !! | AAGATTGTTATCTCATTTTG+TGG | + | chr5_4:24806176-24806195 | None:intergenic | 25.0% |
| ! | CAATAAGACACAATTAACAT+AGG | + | chr5_4:24806260-24806279 | None:intergenic | 25.0% |
| ! | CTATGTTAATTGTGTCTTAT+TGG | - | chr5_4:24806258-24806277 | Msa0845550:CDS | 25.0% |
| ! | AATTCAAAACTGTATCACAA+TGG | + | chr5_4:24806319-24806338 | None:intergenic | 25.0% |
| !!! | TGATACAGTTTTGAATTTTC+TGG | - | chr5_4:24806322-24806341 | Msa0845550:intron | 25.0% |
| !!! | ATTGTTTTGTAGTTTTTTGC+TGG | - | chr5_4:24806543-24806562 | Msa0845550:five_prime_UTR | 25.0% |
| ! | ATTCTCTTTTATACTCCTTG+CGG | - | chr5_4:24803990-24804009 | Msa0845550:three_prime_UTR | 30.0% |
| ATGTTGTGATTTATGGTAAC+TGG | - | chr5_4:24804516-24804535 | Msa0845550:intron | 30.0% | |
| !!! | GTTGTTTTTGTAAGCTATCT+TGG | + | chr5_4:24804764-24804783 | None:intergenic | 30.0% |
| TTTATAATCCGAACTGCATA+GGG | + | chr5_4:24805024-24805043 | None:intergenic | 30.0% | |
| ! | TTTTATAATCCGAACTGCAT+AGG | + | chr5_4:24805025-24805044 | None:intergenic | 30.0% |
| !! | GATTTTACAGGGTGTTAATT+CGG | + | chr5_4:24805049-24805068 | None:intergenic | 30.0% |
| TGAGCAATTGATATTTACCA+AGG | + | chr5_4:24805139-24805158 | None:intergenic | 30.0% | |
| TGGTAAATATCAATTGCTCA+TGG | - | chr5_4:24805139-24805158 | Msa0845550:intron | 30.0% | |
| ! | ATAGTAAAAAAGCATGTCAG+AGG | + | chr5_4:24805764-24805783 | None:intergenic | 30.0% |
| TTGCAAGCTCAAATAATCAT+AGG | + | chr5_4:24805820-24805839 | None:intergenic | 30.0% | |
| AGGTTTGTATGCTTATCTTA+CGG | - | chr5_4:24805972-24805991 | Msa0845550:intron | 30.0% | |
| !! | ATATTTGTCTCTGGTTCTAT+AGG | - | chr5_4:24806050-24806069 | Msa0845550:intron | 30.0% |
| AGAGCAAAAGATTGTGAAAA+AGG | - | chr5_4:24806096-24806115 | Msa0845550:intron | 30.0% | |
| !! | AATCTTTTTGGAAGACTCTT+AGG | - | chr5_4:24806190-24806209 | Msa0845550:intron | 30.0% |
| !! | AATTAAAGGTACTACTGGTA+AGG | + | chr5_4:24806374-24806393 | None:intergenic | 30.0% |
| !! | GCTTAAATTAAAGGTACTAC+TGG | + | chr5_4:24806379-24806398 | None:intergenic | 30.0% |
| GACTTAGAAAATAACCACAA+AGG | + | chr5_4:24806403-24806422 | None:intergenic | 30.0% | |
| ACAGATAAACTTCAATTGTG+CGG | + | chr5_4:24806429-24806448 | None:intergenic | 30.0% | |
| AAAACCCTAAATAAGCTCAG+CGG | - | chr5_4:24804033-24804052 | Msa0845550:intron | 35.0% | |
| AAATCTCTCTCGATCGAAAA+TGG | - | chr5_4:24804072-24804091 | Msa0845550:intron | 35.0% | |
| ! | TTGTGTTGTTGAAATGTAGG+CGG | - | chr5_4:24804255-24804274 | Msa0845550:three_prime_UTR | 35.0% |
| GATACAGTTCATGAGAACTT+AGG | - | chr5_4:24804706-24804725 | Msa0845550:intron | 35.0% | |
| ! | TTTTGTAAGCTATCTTGGAG+AGG | + | chr5_4:24804759-24804778 | None:intergenic | 35.0% |
| AAACATCATACGGACAAACT+AGG | + | chr5_4:24804919-24804938 | None:intergenic | 35.0% | |
| !!! | GTGTTTTGGAGGATTTTACA+GGG | + | chr5_4:24805060-24805079 | None:intergenic | 35.0% |
| ATATCAATTGCTCATGGCAT+TGG | - | chr5_4:24805145-24805164 | Msa0845550:intron | 35.0% | |
| TCTAGTTAACTGTACAGGAT+AGG | + | chr5_4:24805274-24805293 | None:intergenic | 35.0% | |
| CTTGATCTAGTTAACTGTAC+AGG | + | chr5_4:24805279-24805298 | None:intergenic | 35.0% | |
| TATACCTTGAAGCCTTAACT+TGG | - | chr5_4:24805488-24805507 | Msa0845550:intron | 35.0% | |
| CTTGATCTCTTGTATTCTGT+AGG | + | chr5_4:24805882-24805901 | None:intergenic | 35.0% | |
| CTACAGAATACAAGAGATCA+AGG | - | chr5_4:24805880-24805899 | Msa0845550:intron | 35.0% | |
| ATAAGCATACAAACCTTTCC+CGG | + | chr5_4:24805968-24805987 | None:intergenic | 35.0% | |
| GGTTTGTATGCTTATCTTAC+GGG | - | chr5_4:24805973-24805992 | Msa0845550:intron | 35.0% | |
| !! | TCTGGTTCTATAGGATCATT+AGG | - | chr5_4:24806059-24806078 | Msa0845550:intron | 35.0% |
| !! | CTGGTTCTATAGGATCATTA+GGG | - | chr5_4:24806060-24806079 | Msa0845550:intron | 35.0% |
| AAAGGTCCTCAAAATTCAGA+AGG | - | chr5_4:24806114-24806133 | Msa0845550:intron | 35.0% | |
| AATTCAGAAGGCAAAGGAAA+AGG | - | chr5_4:24806126-24806145 | Msa0845550:intron | 35.0% | |
| ! | TTTCCTCCAAGGCATAATTT+TGG | - | chr5_4:24806149-24806168 | Msa0845550:intron | 35.0% |
| !! | CACAAAGGCGCTTAAATTAA+AGG | + | chr5_4:24806388-24806407 | None:intergenic | 35.0% |
| ! | CTTTAATTTAAGCGCCTTTG+TGG | - | chr5_4:24806386-24806405 | Msa0845550:intron | 35.0% |
| AAACTCAACAATAAGCCGCA+AGG | + | chr5_4:24804008-24804027 | None:intergenic | 40.0% | |
| AACCAAATCCAACCAACACA+GGG | - | chr5_4:24804132-24804151 | Msa0845550:three_prime_UTR | 40.0% | |
| ACTACTAAGAAGAGAGCTAG+TGG | - | chr5_4:24804294-24804313 | Msa0845550:three_prime_UTR | 40.0% | |
| GAATTCTCTTGCCAGTAACA+GGG | + | chr5_4:24804329-24804348 | None:intergenic | 40.0% | |
| TGAATTCTCTTGCCAGTAAC+AGG | + | chr5_4:24804330-24804349 | None:intergenic | 40.0% | |
| GTTACTGGCAAGAGAATTCA+AGG | - | chr5_4:24804330-24804349 | Msa0845550:three_prime_UTR | 40.0% | |
| ! | AATGTGTGTCACTGCTATCT+TGG | - | chr5_4:24804453-24804472 | Msa0845550:CDS | 40.0% |
| AAACATTCACAGGCTCTGTT+TGG | + | chr5_4:24804888-24804907 | None:intergenic | 40.0% | |
| GGTCTGAACTAAACATTCAC+AGG | + | chr5_4:24804898-24804917 | None:intergenic | 40.0% | |
| CTTAATAGGGTGGGAAAAGA+AGG | + | chr5_4:24804990-24805009 | None:intergenic | 40.0% | |
| !!! | CGTGTTTTGGAGGATTTTAC+AGG | + | chr5_4:24805061-24805080 | None:intergenic | 40.0% |
| ! | CTCATGGCATTGGAATACTT+AGG | - | chr5_4:24805155-24805174 | Msa0845550:intron | 40.0% |
| CTTGTTCTCTTCCATTGTCT+TGG | - | chr5_4:24805368-24805387 | Msa0845550:intron | 40.0% | |
| TCTCTTCCATTGTCTTGGAA+TGG | - | chr5_4:24805373-24805392 | Msa0845550:intron | 40.0% | |
| TTCCATTGTCTTGGAATGGT+TGG | - | chr5_4:24805377-24805396 | Msa0845550:intron | 40.0% | |
| TGTTCCAAGTTAAGGCTTCA+AGG | + | chr5_4:24805495-24805514 | None:intergenic | 40.0% | |
| ATCCGTGAACAATCATATGC+TGG | - | chr5_4:24805666-24805685 | Msa0845550:intron | 40.0% | |
| AGCCAGCATATGATTGTTCA+CGG | + | chr5_4:24805671-24805690 | None:intergenic | 40.0% | |
| AATTGCAGATTCCACACTTG+AGG | - | chr5_4:24805856-24805875 | Msa0845550:intron | 40.0% | |
| ACAAAACTCCACCATAAGCA+CGG | + | chr5_4:24805932-24805951 | None:intergenic | 40.0% | |
| TAGGATCATTAGGGCTTTCT+TGG | - | chr5_4:24806069-24806088 | Msa0845550:intron | 40.0% | |
| ! | CCTTTGCCTTCTGAATTTTG+AGG | + | chr5_4:24806123-24806142 | None:intergenic | 40.0% |
| CCTCAAAATTCAGAAGGCAA+AGG | - | chr5_4:24806120-24806139 | Msa0845550:intron | 40.0% | |
| AAAGGAAAAGGTTTCCTCCA+AGG | - | chr5_4:24806138-24806157 | Msa0845550:intron | 40.0% | |
| TGTGGTCCAAAATTATGCCT+TGG | + | chr5_4:24806158-24806177 | None:intergenic | 40.0% | |
| TGGTAAGGTACAGTAACACA+AGG | + | chr5_4:24806359-24806378 | None:intergenic | 40.0% | |
| ACAACATACAACATGTGCCT+TGG | - | chr5_4:24806457-24806476 | Msa0845550:exon | 40.0% | |
| CTCACCGCTGAGCTTATTTA+GGG | + | chr5_4:24804040-24804059 | None:intergenic | 45.0% | |
| CAACCAAATCCAACCAACAC+AGG | - | chr5_4:24804131-24804150 | Msa0845550:three_prime_UTR | 45.0% | |
| !! | AACCCTGTGTTGGTTGGATT+TGG | + | chr5_4:24804137-24804156 | None:intergenic | 45.0% |
| ! | TTTGACAACCCTGTGTTGGT+TGG | + | chr5_4:24804143-24804162 | None:intergenic | 45.0% |
| CGCGAGAAACTTAATAGGGT+GGG | + | chr5_4:24804999-24805018 | None:intergenic | 45.0% | |
| ACGCGAGAAACTTAATAGGG+TGG | + | chr5_4:24805000-24805019 | None:intergenic | 45.0% | |
| GGCACGCGAGAAACTTAATA+GGG | + | chr5_4:24805003-24805022 | None:intergenic | 45.0% | |
| !! | CTGGCTTTGAATGCAAACCT+TGG | - | chr5_4:24805119-24805138 | Msa0845550:intron | 45.0% |
| CACCAACCATTCCAAGACAA+TGG | + | chr5_4:24805382-24805401 | None:intergenic | 45.0% | |
| ! | GTCTTGGAATGGTTGGTGTA+TGG | - | chr5_4:24805384-24805403 | Msa0845550:intron | 45.0% |
| GGTGTATGGTTATTCGAGCT+TGG | - | chr5_4:24805398-24805417 | Msa0845550:intron | 45.0% | |
| !! | CAATCATATGCTGGCTCTGT+TGG | - | chr5_4:24805675-24805694 | Msa0845550:intron | 45.0% |
| TATTCTGTAGGCCTCAAGTG+TGG | + | chr5_4:24805870-24805889 | None:intergenic | 45.0% | |
| TTCACAGTCCTACGGTTTCT+AGG | + | chr5_4:24805909-24805928 | None:intergenic | 45.0% | |
| !! | GCTTATGGTGGAGTTTTGTC+TGG | - | chr5_4:24805933-24805952 | Msa0845550:intron | 45.0% |
| !! | TATGGTGGAGTTTTGTCTGG+AGG | - | chr5_4:24805936-24805955 | Msa0845550:intron | 45.0% |
| GGTCCAAAATTATGCCTTGG+AGG | + | chr5_4:24806155-24806174 | None:intergenic | 45.0% | |
| ACATACAACATGTGCCTTGG+TGG | - | chr5_4:24806460-24806479 | Msa0845550:exon | 45.0% | |
| !! | TATTGGCTCAACATCCACCA+AGG | + | chr5_4:24806477-24806496 | None:intergenic | 45.0% |
| !! | TAATATTAATTAAAAATAGT+AGG | + | chr5_4:24805534-24805553 | None:intergenic | 5.0% |
| CCTCACCGCTGAGCTTATTT+AGG | + | chr5_4:24804041-24804060 | None:intergenic | 50.0% | |
| CCTAAATAAGCTCAGCGGTG+AGG | - | chr5_4:24804038-24804057 | Msa0845550:intron | 50.0% | |
| !! | GGGTTTTGACAACCCTGTGT+TGG | + | chr5_4:24804147-24804166 | None:intergenic | 50.0% |
| ! | TTGCCAGTAACAGGGCACTT+AGG | + | chr5_4:24804321-24804340 | None:intergenic | 50.0% |
| GGGCACGCGAGAAACTTAAT+AGG | + | chr5_4:24805004-24805023 | None:intergenic | 50.0% | |
| AAGCACGGTTCACAGTCCTA+CGG | + | chr5_4:24805917-24805936 | None:intergenic | 50.0% | |
| AGGACTGTGAACCGTGCTTA+TGG | - | chr5_4:24805918-24805937 | Msa0845550:intron | 50.0% | |
| ACTGTGAACCGTGCTTATGG+TGG | - | chr5_4:24805921-24805940 | Msa0845550:intron | 50.0% | |
| !!! | TTTTGTCTGGAGGTGCTGTC+CGG | - | chr5_4:24805946-24805965 | Msa0845550:intron | 50.0% |
| TAAGCTCAGCGGTGAGGTAG+AGG | - | chr5_4:24804044-24804063 | Msa0845550:intron | 55.0% | |
| TGGTTGCGTAGCTGTGACGA+CGG | + | chr5_4:24804117-24804136 | None:intergenic | 55.0% | |
| CACAGGGTTGTCAAAACCCC+TGG | - | chr5_4:24804148-24804167 | Msa0845550:three_prime_UTR | 55.0% | |
| GGACCTAAGTGCCCTGTTAC+TGG | - | chr5_4:24804315-24804334 | Msa0845550:three_prime_UTR | 55.0% | |
| CAAGGCTGCCTAGAAACCGT+AGG | - | chr5_4:24805898-24805917 | Msa0845550:intron | 55.0% | |
| !! | TTTGTCTGGAGGTGCTGTCC+GGG | - | chr5_4:24805947-24805966 | Msa0845550:intron | 55.0% |
| GTAGCTGTGACGACGGCGAT+AGG | + | chr5_4:24804110-24804129 | None:intergenic | 60.0% | |
| CTCGCGTGCCCTATGCAGTT+CGG | - | chr5_4:24805013-24805032 | Msa0845550:intron | 60.0% | |
| !! | CTGGAGGTGCTGTCCGGGAA+AGG | - | chr5_4:24805952-24805971 | Msa0845550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 24803967 | 24806598 | 24803967 | ID=Msa0845550;Name=Msa0845550 |
| chr5_4 | mRNA | 24803967 | 24806598 | 24803967 | ID=Msa0845550-mRNA-1;Parent=Msa0845550;Name=Msa0845550-mRNA-1;_AED=0.06;_eAED=0.06;_QI=124|1|1|1|0.75|0.6|5|368|120 |
| chr5_4 | exon | 24803967 | 24804031 | 24803967 | ID=Msa0845550-mRNA-1:exon:9952;Parent=Msa0845550-mRNA-1 |
| chr5_4 | exon | 24804097 | 24804493 | 24804097 | ID=Msa0845550-mRNA-1:exon:9951;Parent=Msa0845550-mRNA-1 |
| chr5_4 | exon | 24804592 | 24804701 | 24804592 | ID=Msa0845550-mRNA-1:exon:9950;Parent=Msa0845550-mRNA-1 |
| chr5_4 | exon | 24806212 | 24806291 | 24806212 | ID=Msa0845550-mRNA-1:exon:9949;Parent=Msa0845550-mRNA-1 |
| chr5_4 | exon | 24806396 | 24806598 | 24806396 | ID=Msa0845550-mRNA-1:exon:9948;Parent=Msa0845550-mRNA-1 |
| chr5_4 | five_prime_UTR | 24806475 | 24806598 | 24806475 | ID=Msa0845550-mRNA-1:five_prime_utr;Parent=Msa0845550-mRNA-1 |
| chr5_4 | CDS | 24806396 | 24806474 | 24806396 | ID=Msa0845550-mRNA-1:cds;Parent=Msa0845550-mRNA-1 |
| chr5_4 | CDS | 24806212 | 24806291 | 24806212 | ID=Msa0845550-mRNA-1:cds;Parent=Msa0845550-mRNA-1 |
| chr5_4 | CDS | 24804592 | 24804701 | 24804592 | ID=Msa0845550-mRNA-1:cds;Parent=Msa0845550-mRNA-1 |
| chr5_4 | CDS | 24804400 | 24804493 | 24804400 | ID=Msa0845550-mRNA-1:cds;Parent=Msa0845550-mRNA-1 |
| chr5_4 | three_prime_UTR | 24804097 | 24804399 | 24804097 | ID=Msa0845550-mRNA-1:three_prime_utr;Parent=Msa0845550-mRNA-1 |
| chr5_4 | three_prime_UTR | 24803967 | 24804031 | 24803967 | ID=Msa0845550-mRNA-1:three_prime_utr;Parent=Msa0845550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
