AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0317910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317910 MtrunA17_Chr2g0291611 97.273 110 3 0 106 215 13 122 1.06e-75 224
Msa0317910 MtrunA17_Chr1g0171031 86.364 110 15 0 106 215 13 122 7.49e-66 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317910 AT1G78190.1 69.643 112 32 2 106 215 13 124 2.30e-50 160
Msa0317910 AT1G22270.1 70.536 112 31 2 106 215 13 124 2.28e-38 129

Find 54 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTCGCAGTTGCGAGTTC+TGG 0.181127 2_4:+16076776 Msa0317910:CDS
ACGACGCTTCCCCGTCAAAA+AGG 0.272003 2_4:+16080717 Msa0317910:CDS
GGGAAGCGTCGTCCAGTCTC+TGG 0.283588 2_4:-16080706 None:intergenic
GGCGAGCAAAGTGTGCATTC+TGG 0.330016 2_4:+16076694 Msa0317910:CDS
CAGGTTTCACCATGCTCTCT+TGG 0.332554 2_4:+16080651 Msa0317910:CDS
CACTCGCAGTTGCGAGTTCT+GGG 0.348753 2_4:+16076777 Msa0317910:CDS
TCCTCGTGGAGAAGCATATT+CGG 0.389745 2_4:-16080745 None:intergenic
AACATTAAGGGTGTGGTGAA+TGG 0.399861 2_4:+16080442 Msa0317910:intron
ATTCAAATGAATTTCTGAAC+AGG 0.407072 2_4:+16080632 Msa0317910:CDS
GCTCTTGTTTGCCCAGAGAC+TGG 0.409195 2_4:+16080694 Msa0317910:CDS
ATGGAAGAGTCAGCCTCTTC+AGG 0.431513 2_4:-16080604 None:intergenic
GCGAGCAAAGTGTGCATTCT+GGG 0.432053 2_4:+16076695 Msa0317910:CDS
GTTTGAGAAGATTGAGTGGA+AGG 0.447732 2_4:+16080540 Msa0317910:CDS
CACCGGAACGGCGTGATCGG+TGG 0.452183 2_4:-16079191 None:intergenic
GTGGAAGCATCGCGAGCAAT+GGG 0.460626 2_4:+16080568 Msa0317910:CDS
ACGGCGTGATCGGTGGGTGG+CGG 0.463752 2_4:-16079184 None:intergenic
TCAACTCTTCGTAGAGAGAA+AGG 0.479484 2_4:-16079142 None:intergenic
AAACAAGAGCACCTTCTTCA+AGG 0.481462 2_4:-16080681 None:intergenic
TGTGGAAGCATCGCGAGCAA+TGG 0.499401 2_4:+16080567 Msa0317910:CDS
GAATCGATAGCCTCTCCCTC+TGG 0.503309 2_4:+16077127 Msa0317910:intron
ACCCACCGATCACGCCGTTC+CGG 0.517528 2_4:+16079189 Msa0317910:CDS
ACTCACCGGAACGGCGTGAT+CGG 0.520721 2_4:-16079194 None:intergenic
AAAGGGAGAAAAGTCAGAAG+AGG 0.521916 2_4:-16077154 None:intergenic
CAACTCTTCGTAGAGAGAAA+GGG 0.523680 2_4:-16079141 None:intergenic
TTCTCTGCTTCTATGCGCAA+TGG 0.528327 2_4:-16080469 None:intergenic
TTGGAACTCCACCTTGAAGA+AGG 0.532245 2_4:+16080670 Msa0317910:CDS
AAGAGGAGAACCAGAGGGAG+AGG 0.532372 2_4:-16077137 None:intergenic
AGATGTTTGAGAAGATTGAG+TGG 0.533344 2_4:+16080536 Msa0317910:CDS
TATGCTTCTCCACGAGGATG+AGG 0.536811 2_4:+16080750 Msa0317910:CDS
ATCGGTGGGTGGCGGCGATG+TGG 0.541254 2_4:-16079176 None:intergenic
GGAAGCGTCGTCCAGTCTCT+GGG 0.549713 2_4:-16080705 None:intergenic
AGAGGCTGACTCTTCCATGC+TGG 0.551581 2_4:+16080609 Msa0317910:CDS
ACCGGAACGGCGTGATCGGT+GGG 0.555469 2_4:-16079190 None:intergenic
GAAAAGAATGTGGAAATGAA+TGG 0.561809 2_4:+16080499 Msa0317910:CDS
GAAAGTGGTGGAAAAGAATG+TGG 0.564107 2_4:+16080489 Msa0317910:CDS
TGTTGATAATCAACCTCAAG+AGG 0.565191 2_4:+16078342 Msa0317910:CDS
AGTCAGAAGAGGAGAACCAG+AGG 0.578274 2_4:-16077143 None:intergenic
ATACACTGAACTACCTGAAG+AGG 0.581320 2_4:+16080591 Msa0317910:CDS
GAGGATATTGTTGAGCACGC+TGG 0.585010 2_4:+16078361 Msa0317910:CDS
GGAACGGCGTGATCGGTGGG+TGG 0.589918 2_4:-16079187 None:intergenic
GCGCATAGAAGCAGAGAAAG+TGG 0.590558 2_4:+16080474 Msa0317910:CDS
GCTCGCGGTTGCGAGCTCAC+AGG 0.593418 2_4:+16076753 Msa0317910:CDS
ATAAATCTCACTCACCGGAA+CGG 0.599089 2_4:-16079203 None:intergenic
GGTGGAGTTCCAAGAGAGCA+TGG 0.611395 2_4:-16080660 None:intergenic
AAATTCATTTGAATCCAGCA+TGG 0.624009 2_4:-16080623 None:intergenic
TGCTCAACAATATCCTCTTG+AGG 0.625868 2_4:-16078355 None:intergenic
GTCAGAAGAGGAGAACCAGA+GGG 0.644419 2_4:-16077142 None:intergenic
GTGGCGAGTTATTCTGCTCG+CGG 0.648840 2_4:+16076738 Msa0317910:CDS
TCCGAATATGCTTCTCCACG+AGG 0.651700 2_4:+16080744 Msa0317910:CDS
CAAGAGCACCTTCTTCAAGG+TGG 0.672068 2_4:-16080678 None:intergenic
TCCTACGTATTTACTCGCAG+TGG 0.675072 2_4:+16076719 Msa0317910:CDS
AATTTCAGACCTCATCCTCG+TGG 0.684201 2_4:-16080759 None:intergenic
CATAGAAGCAGAGAAAGTGG+TGG 0.694337 2_4:+16080477 Msa0317910:CDS
GCCACTGCGAGTAAATACGT+AGG 0.799510 2_4:-16076720 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATTTTCAATATTATTAA+GGG - chr2_4:16077083-16077102 None:intergenic 10.0%
!!! ACTAATTTTCAATATTATTA+AGG - chr2_4:16077084-16077103 None:intergenic 10.0%
!! AAATAAAAATATTAGAAGTT+GGG - chr2_4:16077284-16077303 None:intergenic 10.0%
!! AAAATAAAAATATTAGAAGT+TGG - chr2_4:16077285-16077304 None:intergenic 10.0%
!! AATTAATTAAATAGTTAAGA+CGG + chr2_4:16077490-16077509 Msa0317910:intron 10.0%
!!! TTCTTTTTATTATTTTAATG+AGG + chr2_4:16077605-16077624 Msa0317910:intron 10.0%
!!! AATTATTTTAAGGTTAAATA+TGG - chr2_4:16078826-16078845 None:intergenic 10.0%
!!! TTTTTTTTACCTTTATTAAA+GGG - chr2_4:16079010-16079029 None:intergenic 10.0%
!!! TTTTTTTTTACCTTTATTAA+AGG - chr2_4:16079011-16079030 None:intergenic 10.0%
!!! AATATGATACATATATTTTT+TGG - chr2_4:16079071-16079090 None:intergenic 10.0%
!!! CTAATTTTCAATATTATTAA+GGG - chr2_4:16077083-16077102 None:intergenic 10.0%
!!! ACTAATTTTCAATATTATTA+AGG - chr2_4:16077084-16077103 None:intergenic 10.0%
!! AAATAAAAATATTAGAAGTT+GGG - chr2_4:16077284-16077303 None:intergenic 10.0%
!! AAAATAAAAATATTAGAAGT+TGG - chr2_4:16077285-16077304 None:intergenic 10.0%
!! AATTAATTAAATAGTTAAGA+CGG + chr2_4:16077490-16077509 Msa0317910:intron 10.0%
!!! TTCTTTTTATTATTTTAATG+AGG + chr2_4:16077605-16077624 Msa0317910:intron 10.0%
!!! AATTATTTTAAGGTTAAATA+TGG - chr2_4:16078826-16078845 None:intergenic 10.0%
!!! TTTTTTTTACCTTTATTAAA+GGG - chr2_4:16079010-16079029 None:intergenic 10.0%
!!! TTTTTTTTTACCTTTATTAA+AGG - chr2_4:16079011-16079030 None:intergenic 10.0%
!!! AATATGATACATATATTTTT+TGG - chr2_4:16079071-16079090 None:intergenic 10.0%
!! ATTAATTAAATAGTTAAGAC+GGG + chr2_4:16077491-16077510 Msa0317910:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr2_4:16077926-16077945 None:intergenic 15.0%
!! TTTGAACTTTCTAAATAATA+TGG - chr2_4:16078465-16078484 None:intergenic 15.0%
!! AAGAAAAAAAAAATCCAATT+TGG + chr2_4:16078620-16078639 Msa0317910:intron 15.0%
!!! AGTGAATTTCAATTATTTTA+AGG - chr2_4:16078836-16078855 None:intergenic 15.0%
!!! TTGTTTAATTGAAATTTTGA+AGG + chr2_4:16079089-16079108 Msa0317910:intron 15.0%
!!! TGTTTAATTGAAATTTTGAA+GGG + chr2_4:16079090-16079109 Msa0317910:intron 15.0%
!! AATCAAAAATAAAAGAAAGA+TGG - chr2_4:16079714-16079733 None:intergenic 15.0%
!! ATTAATTAAATAGTTAAGAC+GGG + chr2_4:16077491-16077510 Msa0317910:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr2_4:16077926-16077945 None:intergenic 15.0%
!! TTTGAACTTTCTAAATAATA+TGG - chr2_4:16078465-16078484 None:intergenic 15.0%
!! AAGAAAAAAAAAATCCAATT+TGG + chr2_4:16078620-16078639 Msa0317910:intron 15.0%
!!! AGTGAATTTCAATTATTTTA+AGG - chr2_4:16078836-16078855 None:intergenic 15.0%
!!! TTGTTTAATTGAAATTTTGA+AGG + chr2_4:16079089-16079108 Msa0317910:intron 15.0%
!!! TGTTTAATTGAAATTTTGAA+GGG + chr2_4:16079090-16079109 Msa0317910:intron 15.0%
!! AATCAAAAATAAAAGAAAGA+TGG - chr2_4:16079714-16079733 None:intergenic 15.0%
!!! TATTAAGGGTATAATTCTAT+AGG - chr2_4:16077069-16077088 None:intergenic 20.0%
!! TAAATAATACAGACATAAGT+GGG - chr2_4:16077210-16077229 None:intergenic 20.0%
!! ATAAATAATACAGACATAAG+TGG - chr2_4:16077211-16077230 None:intergenic 20.0%
!!! ATGAGGTATTAGATTTTAAT+TGG + chr2_4:16077622-16077641 Msa0317910:intron 20.0%
!!! GTATTAGATTTTAATTGGTT+GGG + chr2_4:16077627-16077646 Msa0317910:intron 20.0%
!!! AAACTGTTTCAAATTGATTT+GGG - chr2_4:16077794-16077813 None:intergenic 20.0%
!! TAAACTGTTTCAAATTGATT+TGG - chr2_4:16077795-16077814 None:intergenic 20.0%
!! GTAACATTGTATTAATTGAA+GGG - chr2_4:16078000-16078019 None:intergenic 20.0%
!! TGTAACATTGTATTAATTGA+AGG - chr2_4:16078001-16078020 None:intergenic 20.0%
!!! TAAGAAAAAGTTGACTTTTT+AGG - chr2_4:16078146-16078165 None:intergenic 20.0%
!!! GTCAACTTTTTCTTATAATA+AGG + chr2_4:16078151-16078170 Msa0317910:intron 20.0%
!! AAATTATCCTAATCAACTAT+TGG - chr2_4:16078213-16078232 None:intergenic 20.0%
!! AATAGTTGATTAGGATAATT+TGG + chr2_4:16078212-16078231 Msa0317910:intron 20.0%
!!! AAATCCAATTTGGTTATTTT+AGG + chr2_4:16078630-16078649 Msa0317910:intron 20.0%
!!! AATCCAATTTGGTTATTTTA+GGG + chr2_4:16078631-16078650 Msa0317910:intron 20.0%
!! TTAAAATCCCTAAAATGATA+AGG - chr2_4:16078743-16078762 None:intergenic 20.0%
!!! TTTAAGGTTAAATATGGTTT+TGG - chr2_4:16078820-16078839 None:intergenic 20.0%
!! AAACAGAGACTATTATTTAA+AGG + chr2_4:16078954-16078973 Msa0317910:intron 20.0%
!! AACAGAGACTATTATTTAAA+GGG + chr2_4:16078955-16078974 Msa0317910:intron 20.0%
!! TGATTTATCTTTATCTGTTT+AGG + chr2_4:16079409-16079428 Msa0317910:intron 20.0%
!! GATTTATCTTTATCTGTTTA+GGG + chr2_4:16079410-16079429 Msa0317910:intron 20.0%
!! AAAATCAAGAATGAAAGAAA+AGG + chr2_4:16079658-16079677 Msa0317910:intron 20.0%
!!! TTCTTTTTTTAGGAATGTTT+AGG + chr2_4:16079892-16079911 Msa0317910:intron 20.0%
!!! TTTTTTCTGTTTGTTATAGT+CGG + chr2_4:16079979-16079998 Msa0317910:intron 20.0%
!! CAAAAATATATTCATAAACC+AGG + chr2_4:16080112-16080131 Msa0317910:intron 20.0%
!! TATTACTTTGTATGTATTGT+AGG + chr2_4:16080335-16080354 Msa0317910:intron 20.0%
!! ATTACTTTGTATGTATTGTA+GGG + chr2_4:16080336-16080355 Msa0317910:intron 20.0%
!!! TATTAAGGGTATAATTCTAT+AGG - chr2_4:16077069-16077088 None:intergenic 20.0%
!! TAAATAATACAGACATAAGT+GGG - chr2_4:16077210-16077229 None:intergenic 20.0%
!! ATAAATAATACAGACATAAG+TGG - chr2_4:16077211-16077230 None:intergenic 20.0%
!!! ATGAGGTATTAGATTTTAAT+TGG + chr2_4:16077622-16077641 Msa0317910:intron 20.0%
!!! GTATTAGATTTTAATTGGTT+GGG + chr2_4:16077627-16077646 Msa0317910:intron 20.0%
!!! AAACTGTTTCAAATTGATTT+GGG - chr2_4:16077794-16077813 None:intergenic 20.0%
!! TAAACTGTTTCAAATTGATT+TGG - chr2_4:16077795-16077814 None:intergenic 20.0%
!! GTAACATTGTATTAATTGAA+GGG - chr2_4:16078000-16078019 None:intergenic 20.0%
!! TGTAACATTGTATTAATTGA+AGG - chr2_4:16078001-16078020 None:intergenic 20.0%
!!! TAAGAAAAAGTTGACTTTTT+AGG - chr2_4:16078146-16078165 None:intergenic 20.0%
!!! GTCAACTTTTTCTTATAATA+AGG + chr2_4:16078151-16078170 Msa0317910:intron 20.0%
!! AAATTATCCTAATCAACTAT+TGG - chr2_4:16078213-16078232 None:intergenic 20.0%
!! AATAGTTGATTAGGATAATT+TGG + chr2_4:16078212-16078231 Msa0317910:intron 20.0%
!!! AAATCCAATTTGGTTATTTT+AGG + chr2_4:16078630-16078649 Msa0317910:intron 20.0%
!!! AATCCAATTTGGTTATTTTA+GGG + chr2_4:16078631-16078650 Msa0317910:intron 20.0%
!! TTAAAATCCCTAAAATGATA+AGG - chr2_4:16078743-16078762 None:intergenic 20.0%
!!! TTTAAGGTTAAATATGGTTT+TGG - chr2_4:16078820-16078839 None:intergenic 20.0%
!! AAACAGAGACTATTATTTAA+AGG + chr2_4:16078954-16078973 Msa0317910:intron 20.0%
!! AACAGAGACTATTATTTAAA+GGG + chr2_4:16078955-16078974 Msa0317910:intron 20.0%
!! TGATTTATCTTTATCTGTTT+AGG + chr2_4:16079409-16079428 Msa0317910:intron 20.0%
!! GATTTATCTTTATCTGTTTA+GGG + chr2_4:16079410-16079429 Msa0317910:intron 20.0%
!! AAAATCAAGAATGAAAGAAA+AGG + chr2_4:16079658-16079677 Msa0317910:intron 20.0%
!!! TTCTTTTTTTAGGAATGTTT+AGG + chr2_4:16079892-16079911 Msa0317910:intron 20.0%
!!! TTTTTTCTGTTTGTTATAGT+CGG + chr2_4:16079979-16079998 Msa0317910:intron 20.0%
!! CAAAAATATATTCATAAACC+AGG + chr2_4:16080112-16080131 Msa0317910:intron 20.0%
!! TATTACTTTGTATGTATTGT+AGG + chr2_4:16080335-16080354 Msa0317910:intron 20.0%
!! ATTACTTTGTATGTATTGTA+GGG + chr2_4:16080336-16080355 Msa0317910:intron 20.0%
!! GTGAAAAAGTTGTGATTTTT+AGG - chr2_4:16076870-16076889 None:intergenic 25.0%
! GATGATAATTAGATGCTATT+TGG - chr2_4:16076914-16076933 None:intergenic 25.0%
! ATCATCTTAAGTCATATCTA+AGG + chr2_4:16076928-16076947 Msa0317910:intron 25.0%
! CGATTTATGAAGAAATTATG+TGG - chr2_4:16077381-16077400 None:intergenic 25.0%
!!! GGTATTAGATTTTAATTGGT+TGG + chr2_4:16077626-16077645 Msa0317910:intron 25.0%
!! ATCAATTTGAAGCAGTTTAT+AGG + chr2_4:16077741-16077760 Msa0317910:intron 25.0%
!! GTCAACTGTTTCTTATAATA+AGG - chr2_4:16078052-16078071 None:intergenic 25.0%
!!! TAAGAAACAGTTGACTTTTT+TGG + chr2_4:16078057-16078076 Msa0317910:intron 25.0%
!! CTTTTTCTTATAATAAGGAC+CGG + chr2_4:16078156-16078175 Msa0317910:intron 25.0%
! AAACAAACCAATAGTTGATT+AGG + chr2_4:16078203-16078222 Msa0317910:intron 25.0%
! TAACAATTTGGGAAGATATA+TGG + chr2_4:16078396-16078415 Msa0317910:intron 25.0%
! AACAATTTGGGAAGATATAT+GGG + chr2_4:16078397-16078416 Msa0317910:intron 25.0%
! ATTTAAAAGAGCGATTCAAT+CGG - chr2_4:16078527-16078546 None:intergenic 25.0%
! TGTCAACATAATATTCTTTG+TGG + chr2_4:16078698-16078717 Msa0317910:intron 25.0%
! CATAATATTCTTTGTGGATT+AGG + chr2_4:16078704-16078723 Msa0317910:intron 25.0%
!! AGAATATGCCTTATCATTTT+AGG + chr2_4:16078732-16078751 Msa0317910:intron 25.0%
!! GAATATGCCTTATCATTTTA+GGG + chr2_4:16078733-16078752 Msa0317910:intron 25.0%
!!! ACAGAGGTTAATTTTGAAAA+CGG + chr2_4:16078891-16078910 Msa0317910:intron 25.0%
! ACAGAGACTATTATTTAAAG+GGG + chr2_4:16078956-16078975 Msa0317910:intron 25.0%
! AAACATACTCCCTTTAATAA+AGG + chr2_4:16078998-16079017 Msa0317910:intron 25.0%
! GGAAAACTATATAATGAATG+AGG - chr2_4:16079236-16079255 None:intergenic 25.0%
! AGAATCAAAATGCAAATTAC+AGG - chr2_4:16079257-16079276 None:intergenic 25.0%
!! AACATCTTTAAGAGTATGTT+TGG - chr2_4:16079617-16079636 None:intergenic 25.0%
!!! TGATCTGTTCTTCTTTTTTT+AGG + chr2_4:16079882-16079901 Msa0317910:intron 25.0%
! GTTTATCTTGTATTCTTCAT+TGG + chr2_4:16080192-16080211 Msa0317910:intron 25.0%
! TATGCTATCTTCAAACATTA+AGG + chr2_4:16080429-16080448 Msa0317910:intron 25.0%
! ATGCTATCTTCAAACATTAA+GGG + chr2_4:16080430-16080449 Msa0317910:intron 25.0%
! ATTCAAATGAATTTCTGAAC+AGG + chr2_4:16080632-16080651 Msa0317910:CDS 25.0%
!! GTGAAAAAGTTGTGATTTTT+AGG - chr2_4:16076870-16076889 None:intergenic 25.0%
! GATGATAATTAGATGCTATT+TGG - chr2_4:16076914-16076933 None:intergenic 25.0%
! ATCATCTTAAGTCATATCTA+AGG + chr2_4:16076928-16076947 Msa0317910:intron 25.0%
! CGATTTATGAAGAAATTATG+TGG - chr2_4:16077381-16077400 None:intergenic 25.0%
!!! GGTATTAGATTTTAATTGGT+TGG + chr2_4:16077626-16077645 Msa0317910:intron 25.0%
!! ATCAATTTGAAGCAGTTTAT+AGG + chr2_4:16077741-16077760 Msa0317910:intron 25.0%
!! GTCAACTGTTTCTTATAATA+AGG - chr2_4:16078052-16078071 None:intergenic 25.0%
!!! TAAGAAACAGTTGACTTTTT+TGG + chr2_4:16078057-16078076 Msa0317910:intron 25.0%
!! CTTTTTCTTATAATAAGGAC+CGG + chr2_4:16078156-16078175 Msa0317910:intron 25.0%
! AAACAAACCAATAGTTGATT+AGG + chr2_4:16078203-16078222 Msa0317910:intron 25.0%
! TAACAATTTGGGAAGATATA+TGG + chr2_4:16078396-16078415 Msa0317910:intron 25.0%
! AACAATTTGGGAAGATATAT+GGG + chr2_4:16078397-16078416 Msa0317910:intron 25.0%
! ATTTAAAAGAGCGATTCAAT+CGG - chr2_4:16078527-16078546 None:intergenic 25.0%
! TGTCAACATAATATTCTTTG+TGG + chr2_4:16078698-16078717 Msa0317910:intron 25.0%
! CATAATATTCTTTGTGGATT+AGG + chr2_4:16078704-16078723 Msa0317910:intron 25.0%
!! AGAATATGCCTTATCATTTT+AGG + chr2_4:16078732-16078751 Msa0317910:intron 25.0%
!! GAATATGCCTTATCATTTTA+GGG + chr2_4:16078733-16078752 Msa0317910:intron 25.0%
!!! ACAGAGGTTAATTTTGAAAA+CGG + chr2_4:16078891-16078910 Msa0317910:intron 25.0%
! ACAGAGACTATTATTTAAAG+GGG + chr2_4:16078956-16078975 Msa0317910:intron 25.0%
! AAACATACTCCCTTTAATAA+AGG + chr2_4:16078998-16079017 Msa0317910:intron 25.0%
! GGAAAACTATATAATGAATG+AGG - chr2_4:16079236-16079255 None:intergenic 25.0%
! AGAATCAAAATGCAAATTAC+AGG - chr2_4:16079257-16079276 None:intergenic 25.0%
!! AACATCTTTAAGAGTATGTT+TGG - chr2_4:16079617-16079636 None:intergenic 25.0%
!!! TGATCTGTTCTTCTTTTTTT+AGG + chr2_4:16079882-16079901 Msa0317910:intron 25.0%
! GTTTATCTTGTATTCTTCAT+TGG + chr2_4:16080192-16080211 Msa0317910:intron 25.0%
! TATGCTATCTTCAAACATTA+AGG + chr2_4:16080429-16080448 Msa0317910:intron 25.0%
! ATGCTATCTTCAAACATTAA+GGG + chr2_4:16080430-16080449 Msa0317910:intron 25.0%
! ATTCAAATGAATTTCTGAAC+AGG + chr2_4:16080632-16080651 Msa0317910:CDS 25.0%
!!! AGTTGTGATTTTTAGGTTTC+TGG - chr2_4:16076863-16076882 None:intergenic 30.0%
! ATTAGATGCTATTTGGATGA+AGG - chr2_4:16076907-16076926 None:intergenic 30.0%
!! GTTAAGTTTTGGTGAGAATT+GGG - chr2_4:16077027-16077046 None:intergenic 30.0%
! AGCATGATTAGGTTAAGTTT+TGG - chr2_4:16077038-16077057 None:intergenic 30.0%
AGGATGAATTTAGCATGATT+AGG - chr2_4:16077049-16077068 None:intergenic 30.0%
ATTCTGCAATTACAAGGTAA+GGG - chr2_4:16077111-16077130 None:intergenic 30.0%
ATGTTGTGAAGTTGTTATGT+TGG - chr2_4:16077350-16077369 None:intergenic 30.0%
TTCTTATAATAAGGACCGAA+GGG - chr2_4:16078043-16078062 None:intergenic 30.0%
TTTCTTATAATAAGGACCGA+AGG - chr2_4:16078044-16078063 None:intergenic 30.0%
TAAAGAAAAAATACTCCCTC+CGG - chr2_4:16078178-16078197 None:intergenic 30.0%
!! AAGCGATACTCATTTTGAAA+AGG + chr2_4:16078295-16078314 Msa0317910:intron 30.0%
!! GATACTCATTTTGAAAAGGA+GGG + chr2_4:16078299-16078318 Msa0317910:intron 30.0%
! AGGTTGATTATCAACATTCT+TGG - chr2_4:16078338-16078357 None:intergenic 30.0%
! TTTTTCCCAGGTTAACAATT+TGG + chr2_4:16078384-16078403 Msa0317910:intron 30.0%
! TTTTCCCAGGTTAACAATTT+GGG + chr2_4:16078385-16078404 Msa0317910:intron 30.0%
AAAGTTCAAAGCATGTTAAG+TGG + chr2_4:16078475-16078494 Msa0317910:intron 30.0%
GATATCGTCACAAATTAAGT+TGG - chr2_4:16078597-16078616 None:intergenic 30.0%
TCACCCTAAAATAACCAAAT+TGG - chr2_4:16078637-16078656 None:intergenic 30.0%
CTCTGTTGTTAATTCTCTAA+CGG - chr2_4:16078877-16078896 None:intergenic 30.0%
TTCAATTCGAAAGATAGAGT+TGG - chr2_4:16079280-16079299 None:intergenic 30.0%
AGCAAACAAGAAACAGTTTA+GGG - chr2_4:16079311-16079330 None:intergenic 30.0%
! TCTTTATCTGTTTAGGGTTT+AGG + chr2_4:16079416-16079435 Msa0317910:intron 30.0%
! CTTTATCTGTTTAGGGTTTA+GGG + chr2_4:16079417-16079436 Msa0317910:intron 30.0%
! TGAGTTGAACAATTAACTTG+AGG - chr2_4:16079532-16079551 None:intergenic 30.0%
!!! TAAGAGTATGTTTGGTTTTG+AGG - chr2_4:16079609-16079628 None:intergenic 30.0%
ATAAAAGAAAGATGGCTAAG+TGG - chr2_4:16079706-16079725 None:intergenic 30.0%
TAATGAATGCAACACTTTCT+TGG + chr2_4:16079831-16079850 Msa0317910:intron 30.0%
GTCTTGTATCTTCAAATGTA+AGG + chr2_4:16080072-16080091 Msa0317910:intron 30.0%
ATATTCATAAACCAGGCTTA+TGG + chr2_4:16080119-16080138 Msa0317910:intron 30.0%
! CATTTCTAGGTATAAGAACA+CGG - chr2_4:16080239-16080258 None:intergenic 30.0%
!! ATAGGACTTCTGAAATTGTA+GGG + chr2_4:16080361-16080380 Msa0317910:intron 30.0%
GAAAAGAATGTGGAAATGAA+TGG + chr2_4:16080499-16080518 Msa0317910:CDS 30.0%
AAATTCATTTGAATCCAGCA+TGG - chr2_4:16080626-16080645 None:intergenic 30.0%
!!! AGTTGTGATTTTTAGGTTTC+TGG - chr2_4:16076863-16076882 None:intergenic 30.0%
! ATTAGATGCTATTTGGATGA+AGG - chr2_4:16076907-16076926 None:intergenic 30.0%
!! GTTAAGTTTTGGTGAGAATT+GGG - chr2_4:16077027-16077046 None:intergenic 30.0%
! AGCATGATTAGGTTAAGTTT+TGG - chr2_4:16077038-16077057 None:intergenic 30.0%
AGGATGAATTTAGCATGATT+AGG - chr2_4:16077049-16077068 None:intergenic 30.0%
ATTCTGCAATTACAAGGTAA+GGG - chr2_4:16077111-16077130 None:intergenic 30.0%
ATGTTGTGAAGTTGTTATGT+TGG - chr2_4:16077350-16077369 None:intergenic 30.0%
TTCTTATAATAAGGACCGAA+GGG - chr2_4:16078043-16078062 None:intergenic 30.0%
TTTCTTATAATAAGGACCGA+AGG - chr2_4:16078044-16078063 None:intergenic 30.0%
TAAAGAAAAAATACTCCCTC+CGG - chr2_4:16078178-16078197 None:intergenic 30.0%
!! AAGCGATACTCATTTTGAAA+AGG + chr2_4:16078295-16078314 Msa0317910:intron 30.0%
!! GATACTCATTTTGAAAAGGA+GGG + chr2_4:16078299-16078318 Msa0317910:intron 30.0%
! AGGTTGATTATCAACATTCT+TGG - chr2_4:16078338-16078357 None:intergenic 30.0%
! TTTTTCCCAGGTTAACAATT+TGG + chr2_4:16078384-16078403 Msa0317910:intron 30.0%
! TTTTCCCAGGTTAACAATTT+GGG + chr2_4:16078385-16078404 Msa0317910:intron 30.0%
AAAGTTCAAAGCATGTTAAG+TGG + chr2_4:16078475-16078494 Msa0317910:intron 30.0%
GATATCGTCACAAATTAAGT+TGG - chr2_4:16078597-16078616 None:intergenic 30.0%
TCACCCTAAAATAACCAAAT+TGG - chr2_4:16078637-16078656 None:intergenic 30.0%
CTCTGTTGTTAATTCTCTAA+CGG - chr2_4:16078877-16078896 None:intergenic 30.0%
TTCAATTCGAAAGATAGAGT+TGG - chr2_4:16079280-16079299 None:intergenic 30.0%
AGCAAACAAGAAACAGTTTA+GGG - chr2_4:16079311-16079330 None:intergenic 30.0%
! TCTTTATCTGTTTAGGGTTT+AGG + chr2_4:16079416-16079435 Msa0317910:intron 30.0%
! CTTTATCTGTTTAGGGTTTA+GGG + chr2_4:16079417-16079436 Msa0317910:intron 30.0%
! TGAGTTGAACAATTAACTTG+AGG - chr2_4:16079532-16079551 None:intergenic 30.0%
!!! TAAGAGTATGTTTGGTTTTG+AGG - chr2_4:16079609-16079628 None:intergenic 30.0%
ATAAAAGAAAGATGGCTAAG+TGG - chr2_4:16079706-16079725 None:intergenic 30.0%
TAATGAATGCAACACTTTCT+TGG + chr2_4:16079831-16079850 Msa0317910:intron 30.0%
GTCTTGTATCTTCAAATGTA+AGG + chr2_4:16080072-16080091 Msa0317910:intron 30.0%
ATATTCATAAACCAGGCTTA+TGG + chr2_4:16080119-16080138 Msa0317910:intron 30.0%
! CATTTCTAGGTATAAGAACA+CGG - chr2_4:16080239-16080258 None:intergenic 30.0%
!! ATAGGACTTCTGAAATTGTA+GGG + chr2_4:16080361-16080380 Msa0317910:intron 30.0%
GAAAAGAATGTGGAAATGAA+TGG + chr2_4:16080499-16080518 Msa0317910:CDS 30.0%
AAATTCATTTGAATCCAGCA+TGG - chr2_4:16080626-16080645 None:intergenic 30.0%
GATGAAGGAATCGTGAATAT+AGG - chr2_4:16076892-16076911 None:intergenic 35.0%
GAGAATTGGGAATTAGGTTT+AGG - chr2_4:16077014-16077033 None:intergenic 35.0%
TTTGGTGAGAATTGGGAATT+AGG - chr2_4:16077020-16077039 None:intergenic 35.0%
!! GGTTAAGTTTTGGTGAGAAT+TGG - chr2_4:16077028-16077047 None:intergenic 35.0%
GATTCTGCAATTACAAGGTA+AGG - chr2_4:16077112-16077131 None:intergenic 35.0%
!! CTATCGATTCTGCAATTACA+AGG - chr2_4:16077117-16077136 None:intergenic 35.0%
!! TGAAACGCTTTTGGAGAAAA+GGG - chr2_4:16077174-16077193 None:intergenic 35.0%
! GTTTTTACGTGAAACGCTTT+TGG - chr2_4:16077183-16077202 None:intergenic 35.0%
GGTGGAAAGAGTAAGTTTAT+AGG - chr2_4:16077255-16077274 None:intergenic 35.0%
! TTCTTGTCGGTTAAAGAAAG+TGG + chr2_4:16077532-16077551 Msa0317910:intron 35.0%
CGGTTAAAGAAAGTGGAAAA+AGG + chr2_4:16077539-16077558 Msa0317910:intron 35.0%
AAAGGTCAAGACATTGCATA+AGG - chr2_4:16077825-16077844 None:intergenic 35.0%
AACCAAACGCTTGACAAAAA+AGG - chr2_4:16077843-16077862 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+TGG - chr2_4:16077896-16077915 None:intergenic 35.0%
! TTCCAAAGTATTACTCCCTT+CGG + chr2_4:16078025-16078044 Msa0317910:intron 35.0%
TTTCTTATAATAAGGACCGG+AGG + chr2_4:16078159-16078178 Msa0317910:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG + chr2_4:16078160-16078179 Msa0317910:intron 35.0%
ATTGCACACAGATTAAGGAA+TGG - chr2_4:16078269-16078288 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG + chr2_4:16078269-16078288 Msa0317910:intron 35.0%
!! CGATACTCATTTTGAAAAGG+AGG + chr2_4:16078298-16078317 Msa0317910:intron 35.0%
!! TGTTGATAATCAACCTCAAG+AGG + chr2_4:16078342-16078361 Msa0317910:CDS 35.0%
TCTTCCCAAATTGTTAACCT+GGG - chr2_4:16078392-16078411 None:intergenic 35.0%
ATCTTCCCAAATTGTTAACC+TGG - chr2_4:16078393-16078412 None:intergenic 35.0%
TTCAAAGCATGTTAAGTGGT+TGG + chr2_4:16078479-16078498 Msa0317910:intron 35.0%
ACATATCCAACTAATCAGGT+GGG - chr2_4:16078676-16078695 None:intergenic 35.0%
CAACACATATCCAACTAATC+AGG - chr2_4:16078680-16078699 None:intergenic 35.0%
TTCAAAGTCACGCAAAATGT+AGG + chr2_4:16078792-16078811 Msa0317910:intron 35.0%
TCAAAGTCACGCAAAATGTA+GGG + chr2_4:16078793-16078812 Msa0317910:intron 35.0%
CGTTAGAGAATTAACAACAG+AGG + chr2_4:16078875-16078894 Msa0317910:intron 35.0%
TGAAGATAAATCTCACTCAC+CGG - chr2_4:16079211-16079230 None:intergenic 35.0%
GAGCAAACAAGAAACAGTTT+AGG - chr2_4:16079312-16079331 None:intergenic 35.0%
GAAATCCAACTTGTATGTGT+TGG - chr2_4:16079355-16079374 None:intergenic 35.0%
CTCTCTCTGTATTCATTCAT+CGG + chr2_4:16079380-16079399 Msa0317910:intron 35.0%
TGTTCAGCTTAGTGTATGTT+TGG + chr2_4:16079456-16079475 Msa0317910:intron 35.0%
GAATGAAAGAAAAGGTGACT+TGG + chr2_4:16079666-16079685 Msa0317910:intron 35.0%
ATCAATTTGAGAAGCTTGTC+AGG + chr2_4:16079780-16079799 Msa0317910:intron 35.0%
TCAATTTGAGAAGCTTGTCA+GGG + chr2_4:16079781-16079800 Msa0317910:intron 35.0%
!! GTCATTCGACTCATTTTTGT+AGG + chr2_4:16079914-16079933 Msa0317910:intron 35.0%
! ATTTTTGTAGGCAAAGCTGT+AGG + chr2_4:16079926-16079945 Msa0317910:intron 35.0%
! TTTTTGTAGGCAAAGCTGTA+GGG + chr2_4:16079927-16079946 Msa0317910:intron 35.0%
AAATGTAAGGAAATCGTGTG+TGG + chr2_4:16080085-16080104 Msa0317910:intron 35.0%
AATGTAAGGAAATCGTGTGT+GGG + chr2_4:16080086-16080105 Msa0317910:intron 35.0%
AAAAGCTAAAACCATAAGCC+TGG - chr2_4:16080133-16080152 None:intergenic 35.0%
!! ACAAAAGTACTTGTGCATTC+TGG + chr2_4:16080170-16080189 Msa0317910:intron 35.0%
ACGACGAACAATACATTTCT+AGG - chr2_4:16080252-16080271 None:intergenic 35.0%
AGCACAAACTGAAATGAAAC+TGG + chr2_4:16080279-16080298 Msa0317910:intron 35.0%
AACTGAAATGAAACTGGACA+TGG + chr2_4:16080285-16080304 Msa0317910:intron 35.0%
TGTATGTATTGTAGGGACAT+AGG + chr2_4:16080343-16080362 Msa0317910:intron 35.0%
!! CATAGGACTTCTGAAATTGT+AGG + chr2_4:16080360-16080379 Msa0317910:intron 35.0%
GGCTGAAGATTTGATCAATT+TGG + chr2_4:16080382-16080401 Msa0317910:intron 35.0%
ATCTTCAAACATTAAGGGTG+TGG + chr2_4:16080435-16080454 Msa0317910:intron 35.0%
AGATGTTTGAGAAGATTGAG+TGG + chr2_4:16080536-16080555 Msa0317910:CDS 35.0%
GATGAAGGAATCGTGAATAT+AGG - chr2_4:16076892-16076911 None:intergenic 35.0%
GAGAATTGGGAATTAGGTTT+AGG - chr2_4:16077014-16077033 None:intergenic 35.0%
TTTGGTGAGAATTGGGAATT+AGG - chr2_4:16077020-16077039 None:intergenic 35.0%
!! GGTTAAGTTTTGGTGAGAAT+TGG - chr2_4:16077028-16077047 None:intergenic 35.0%
GATTCTGCAATTACAAGGTA+AGG - chr2_4:16077112-16077131 None:intergenic 35.0%
!! CTATCGATTCTGCAATTACA+AGG - chr2_4:16077117-16077136 None:intergenic 35.0%
!! TGAAACGCTTTTGGAGAAAA+GGG - chr2_4:16077174-16077193 None:intergenic 35.0%
! GTTTTTACGTGAAACGCTTT+TGG - chr2_4:16077183-16077202 None:intergenic 35.0%
GGTGGAAAGAGTAAGTTTAT+AGG - chr2_4:16077255-16077274 None:intergenic 35.0%
! TTCTTGTCGGTTAAAGAAAG+TGG + chr2_4:16077532-16077551 Msa0317910:intron 35.0%
CGGTTAAAGAAAGTGGAAAA+AGG + chr2_4:16077539-16077558 Msa0317910:intron 35.0%
AAAGGTCAAGACATTGCATA+AGG - chr2_4:16077825-16077844 None:intergenic 35.0%
AACCAAACGCTTGACAAAAA+AGG - chr2_4:16077843-16077862 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+TGG - chr2_4:16077896-16077915 None:intergenic 35.0%
! TTCCAAAGTATTACTCCCTT+CGG + chr2_4:16078025-16078044 Msa0317910:intron 35.0%
TTTCTTATAATAAGGACCGG+AGG + chr2_4:16078159-16078178 Msa0317910:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG + chr2_4:16078160-16078179 Msa0317910:intron 35.0%
ATTGCACACAGATTAAGGAA+TGG - chr2_4:16078269-16078288 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG + chr2_4:16078269-16078288 Msa0317910:intron 35.0%
!! CGATACTCATTTTGAAAAGG+AGG + chr2_4:16078298-16078317 Msa0317910:intron 35.0%
!! TGTTGATAATCAACCTCAAG+AGG + chr2_4:16078342-16078361 Msa0317910:CDS 35.0%
TCTTCCCAAATTGTTAACCT+GGG - chr2_4:16078392-16078411 None:intergenic 35.0%
ATCTTCCCAAATTGTTAACC+TGG - chr2_4:16078393-16078412 None:intergenic 35.0%
TTCAAAGCATGTTAAGTGGT+TGG + chr2_4:16078479-16078498 Msa0317910:intron 35.0%
ACATATCCAACTAATCAGGT+GGG - chr2_4:16078676-16078695 None:intergenic 35.0%
CAACACATATCCAACTAATC+AGG - chr2_4:16078680-16078699 None:intergenic 35.0%
TTCAAAGTCACGCAAAATGT+AGG + chr2_4:16078792-16078811 Msa0317910:intron 35.0%
TCAAAGTCACGCAAAATGTA+GGG + chr2_4:16078793-16078812 Msa0317910:intron 35.0%
CGTTAGAGAATTAACAACAG+AGG + chr2_4:16078875-16078894 Msa0317910:intron 35.0%
TGAAGATAAATCTCACTCAC+CGG - chr2_4:16079211-16079230 None:intergenic 35.0%
GAGCAAACAAGAAACAGTTT+AGG - chr2_4:16079312-16079331 None:intergenic 35.0%
GAAATCCAACTTGTATGTGT+TGG - chr2_4:16079355-16079374 None:intergenic 35.0%
CTCTCTCTGTATTCATTCAT+CGG + chr2_4:16079380-16079399 Msa0317910:intron 35.0%
TGTTCAGCTTAGTGTATGTT+TGG + chr2_4:16079456-16079475 Msa0317910:intron 35.0%
GAATGAAAGAAAAGGTGACT+TGG + chr2_4:16079666-16079685 Msa0317910:intron 35.0%
ATCAATTTGAGAAGCTTGTC+AGG + chr2_4:16079780-16079799 Msa0317910:intron 35.0%
TCAATTTGAGAAGCTTGTCA+GGG + chr2_4:16079781-16079800 Msa0317910:intron 35.0%
!! GTCATTCGACTCATTTTTGT+AGG + chr2_4:16079914-16079933 Msa0317910:intron 35.0%
! ATTTTTGTAGGCAAAGCTGT+AGG + chr2_4:16079926-16079945 Msa0317910:intron 35.0%
! TTTTTGTAGGCAAAGCTGTA+GGG + chr2_4:16079927-16079946 Msa0317910:intron 35.0%
AAATGTAAGGAAATCGTGTG+TGG + chr2_4:16080085-16080104 Msa0317910:intron 35.0%
AATGTAAGGAAATCGTGTGT+GGG + chr2_4:16080086-16080105 Msa0317910:intron 35.0%
AAAAGCTAAAACCATAAGCC+TGG - chr2_4:16080133-16080152 None:intergenic 35.0%
!! ACAAAAGTACTTGTGCATTC+TGG + chr2_4:16080170-16080189 Msa0317910:intron 35.0%
ACGACGAACAATACATTTCT+AGG - chr2_4:16080252-16080271 None:intergenic 35.0%
AGCACAAACTGAAATGAAAC+TGG + chr2_4:16080279-16080298 Msa0317910:intron 35.0%
AACTGAAATGAAACTGGACA+TGG + chr2_4:16080285-16080304 Msa0317910:intron 35.0%
TGTATGTATTGTAGGGACAT+AGG + chr2_4:16080343-16080362 Msa0317910:intron 35.0%
!! CATAGGACTTCTGAAATTGT+AGG + chr2_4:16080360-16080379 Msa0317910:intron 35.0%
GGCTGAAGATTTGATCAATT+TGG + chr2_4:16080382-16080401 Msa0317910:intron 35.0%
ATCTTCAAACATTAAGGGTG+TGG + chr2_4:16080435-16080454 Msa0317910:intron 35.0%
AGATGTTTGAGAAGATTGAG+TGG + chr2_4:16080536-16080555 Msa0317910:CDS 35.0%
AAAGGGAGAAAAGTCAGAAG+AGG - chr2_4:16077157-16077176 None:intergenic 40.0%
!! GTGAAACGCTTTTGGAGAAA+AGG - chr2_4:16077175-16077194 None:intergenic 40.0%
ATATTAGAAGTTGGGCTGTG+AGG - chr2_4:16077276-16077295 None:intergenic 40.0%
TGGGTGTAAGAATGATGTGT+TGG + chr2_4:16077646-16077665 Msa0317910:intron 40.0%
GGGTGTAAGAATGATGTGTT+GGG + chr2_4:16077647-16077666 Msa0317910:intron 40.0%
!!! GACCTTTTTTGTCAAGCGTT+TGG + chr2_4:16077838-16077857 Msa0317910:intron 40.0%
AGCCAATTGCACACAGATTA+AGG - chr2_4:16078274-16078293 None:intergenic 40.0%
TGCTCAACAATATCCTCTTG+AGG - chr2_4:16078358-16078377 None:intergenic 40.0%
AAAGCATGTTAAGTGGTTGG+AGG + chr2_4:16078482-16078501 Msa0317910:intron 40.0%
CACATATCCAACTAATCAGG+TGG - chr2_4:16078677-16078696 None:intergenic 40.0%
CTAACGGAATGTTGATGTGA+CGG - chr2_4:16078861-16078880 None:intergenic 40.0%
CAACTCTTCGTAGAGAGAAA+GGG - chr2_4:16079144-16079163 None:intergenic 40.0%
TCAACTCTTCGTAGAGAGAA+AGG - chr2_4:16079145-16079164 None:intergenic 40.0%
ATAAATCTCACTCACCGGAA+CGG - chr2_4:16079206-16079225 None:intergenic 40.0%
TCATGCCAACACATACAAGT+TGG + chr2_4:16079347-16079366 Msa0317910:intron 40.0%
TACAAGACATGACTCACATG+AGG - chr2_4:16080060-16080079 None:intergenic 40.0%
AATGAAACTGGACATGGACT+TGG + chr2_4:16080291-16080310 Msa0317910:intron 40.0%
! AACATTAAGGGTGTGGTGAA+TGG + chr2_4:16080442-16080461 Msa0317910:intron 40.0%
! GAAAGTGGTGGAAAAGAATG+TGG + chr2_4:16080489-16080508 Msa0317910:CDS 40.0%
GTTTGAGAAGATTGAGTGGA+AGG + chr2_4:16080540-16080559 Msa0317910:CDS 40.0%
ATACACTGAACTACCTGAAG+AGG + chr2_4:16080591-16080610 Msa0317910:CDS 40.0%
!! AAACAAGAGCACCTTCTTCA+AGG - chr2_4:16080684-16080703 None:intergenic 40.0%
! ATTCGGAATGCCCTTTTTGA+CGG - chr2_4:16080731-16080750 None:intergenic 40.0%
AAAGGGAGAAAAGTCAGAAG+AGG - chr2_4:16077157-16077176 None:intergenic 40.0%
!! GTGAAACGCTTTTGGAGAAA+AGG - chr2_4:16077175-16077194 None:intergenic 40.0%
ATATTAGAAGTTGGGCTGTG+AGG - chr2_4:16077276-16077295 None:intergenic 40.0%
TGGGTGTAAGAATGATGTGT+TGG + chr2_4:16077646-16077665 Msa0317910:intron 40.0%
GGGTGTAAGAATGATGTGTT+GGG + chr2_4:16077647-16077666 Msa0317910:intron 40.0%
!!! GACCTTTTTTGTCAAGCGTT+TGG + chr2_4:16077838-16077857 Msa0317910:intron 40.0%
AGCCAATTGCACACAGATTA+AGG - chr2_4:16078274-16078293 None:intergenic 40.0%
TGCTCAACAATATCCTCTTG+AGG - chr2_4:16078358-16078377 None:intergenic 40.0%
AAAGCATGTTAAGTGGTTGG+AGG + chr2_4:16078482-16078501 Msa0317910:intron 40.0%
CACATATCCAACTAATCAGG+TGG - chr2_4:16078677-16078696 None:intergenic 40.0%
CTAACGGAATGTTGATGTGA+CGG - chr2_4:16078861-16078880 None:intergenic 40.0%
CAACTCTTCGTAGAGAGAAA+GGG - chr2_4:16079144-16079163 None:intergenic 40.0%
TCAACTCTTCGTAGAGAGAA+AGG - chr2_4:16079145-16079164 None:intergenic 40.0%
ATAAATCTCACTCACCGGAA+CGG - chr2_4:16079206-16079225 None:intergenic 40.0%
TCATGCCAACACATACAAGT+TGG + chr2_4:16079347-16079366 Msa0317910:intron 40.0%
TACAAGACATGACTCACATG+AGG - chr2_4:16080060-16080079 None:intergenic 40.0%
AATGAAACTGGACATGGACT+TGG + chr2_4:16080291-16080310 Msa0317910:intron 40.0%
! AACATTAAGGGTGTGGTGAA+TGG + chr2_4:16080442-16080461 Msa0317910:intron 40.0%
! GAAAGTGGTGGAAAAGAATG+TGG + chr2_4:16080489-16080508 Msa0317910:CDS 40.0%
GTTTGAGAAGATTGAGTGGA+AGG + chr2_4:16080540-16080559 Msa0317910:CDS 40.0%
ATACACTGAACTACCTGAAG+AGG + chr2_4:16080591-16080610 Msa0317910:CDS 40.0%
!! AAACAAGAGCACCTTCTTCA+AGG - chr2_4:16080684-16080703 None:intergenic 40.0%
! ATTCGGAATGCCCTTTTTGA+CGG - chr2_4:16080731-16080750 None:intergenic 40.0%
TCCTACGTATTTACTCGCAG+TGG + chr2_4:16076719-16076738 Msa0317910:CDS 45.0%
GAAACCTATGCGTGCTTGTA+AGG + chr2_4:16077763-16077782 Msa0317910:intron 45.0%
AATGCCTTACAAGCACGCAT+AGG - chr2_4:16077770-16077789 None:intergenic 45.0%
GACCGAAGGGAGTAATACTT+TGG - chr2_4:16078030-16078049 None:intergenic 45.0%
! CGTAGAGAGAAAGGGTTTTG+CGG - chr2_4:16079136-16079155 None:intergenic 45.0%
! AGAAAAGGTGACTTGGCTGA+AGG + chr2_4:16079673-16079692 Msa0317910:intron 45.0%
! GAAAAGGTGACTTGGCTGAA+GGG + chr2_4:16079674-16079693 Msa0317910:intron 45.0%
TAGGCAAAGCTGTAGGGTAT+AGG + chr2_4:16079933-16079952 Msa0317910:intron 45.0%
!! CATGAGGCATTTGGTAGTGT+TGG - chr2_4:16080044-16080063 None:intergenic 45.0%
! CATGACTCACATGAGGCATT+TGG - chr2_4:16080053-16080072 None:intergenic 45.0%
! GGACATGGACTTGGTTTCAT+TGG + chr2_4:16080300-16080319 Msa0317910:intron 45.0%
TTCTCTGCTTCTATGCGCAA+TGG - chr2_4:16080472-16080491 None:intergenic 45.0%
CATAGAAGCAGAGAAAGTGG+TGG + chr2_4:16080477-16080496 Msa0317910:CDS 45.0%
! GATTGAGTGGAAGGCTTTTG+TGG + chr2_4:16080549-16080568 Msa0317910:CDS 45.0%
TTGGAACTCCACCTTGAAGA+AGG + chr2_4:16080670-16080689 Msa0317910:CDS 45.0%
! TTCGGAATGCCCTTTTTGAC+GGG - chr2_4:16080730-16080749 None:intergenic 45.0%
! TCCTCGTGGAGAAGCATATT+CGG - chr2_4:16080748-16080767 None:intergenic 45.0%
TCCTACGTATTTACTCGCAG+TGG + chr2_4:16076719-16076738 Msa0317910:CDS 45.0%
GAAACCTATGCGTGCTTGTA+AGG + chr2_4:16077763-16077782 Msa0317910:intron 45.0%
AATGCCTTACAAGCACGCAT+AGG - chr2_4:16077770-16077789 None:intergenic 45.0%
GACCGAAGGGAGTAATACTT+TGG - chr2_4:16078030-16078049 None:intergenic 45.0%
! CGTAGAGAGAAAGGGTTTTG+CGG - chr2_4:16079136-16079155 None:intergenic 45.0%
! AGAAAAGGTGACTTGGCTGA+AGG + chr2_4:16079673-16079692 Msa0317910:intron 45.0%
! GAAAAGGTGACTTGGCTGAA+GGG + chr2_4:16079674-16079693 Msa0317910:intron 45.0%
TAGGCAAAGCTGTAGGGTAT+AGG + chr2_4:16079933-16079952 Msa0317910:intron 45.0%
!! CATGAGGCATTTGGTAGTGT+TGG - chr2_4:16080044-16080063 None:intergenic 45.0%
! CATGACTCACATGAGGCATT+TGG - chr2_4:16080053-16080072 None:intergenic 45.0%
! GGACATGGACTTGGTTTCAT+TGG + chr2_4:16080300-16080319 Msa0317910:intron 45.0%
TTCTCTGCTTCTATGCGCAA+TGG - chr2_4:16080472-16080491 None:intergenic 45.0%
CATAGAAGCAGAGAAAGTGG+TGG + chr2_4:16080477-16080496 Msa0317910:CDS 45.0%
! GATTGAGTGGAAGGCTTTTG+TGG + chr2_4:16080549-16080568 Msa0317910:CDS 45.0%
TTGGAACTCCACCTTGAAGA+AGG + chr2_4:16080670-16080689 Msa0317910:CDS 45.0%
! TTCGGAATGCCCTTTTTGAC+GGG - chr2_4:16080730-16080749 None:intergenic 45.0%
! TCCTCGTGGAGAAGCATATT+CGG - chr2_4:16080748-16080767 None:intergenic 45.0%
GCGAGCAAAGTGTGCATTCT+GGG + chr2_4:16076695-16076714 Msa0317910:CDS 50.0%
GCCACTGCGAGTAAATACGT+AGG - chr2_4:16076723-16076742 None:intergenic 50.0%
GCGAGCGATGAATGTCAGTA+CGG + chr2_4:16076837-16076856 Msa0317910:intron 50.0%
GTCAGAAGAGGAGAACCAGA+GGG - chr2_4:16077145-16077164 None:intergenic 50.0%
AGTCAGAAGAGGAGAACCAG+AGG - chr2_4:16077146-16077165 None:intergenic 50.0%
TTAGAAGTTGGGCTGTGAGG+TGG - chr2_4:16077273-16077292 None:intergenic 50.0%
TAAGACGGGCGTTACAGTAG+TGG + chr2_4:16077505-16077524 Msa0317910:intron 50.0%
AAGACGGGCGTTACAGTAGT+GGG + chr2_4:16077506-16077525 Msa0317910:intron 50.0%
!! CAGTAGTGGGTGGTTCTTGT+CGG + chr2_4:16077519-16077538 Msa0317910:intron 50.0%
GAGGATATTGTTGAGCACGC+TGG + chr2_4:16078361-16078380 Msa0317910:CDS 50.0%
AAGCGACCCACCTGATTAGT+TGG + chr2_4:16078667-16078686 Msa0317910:intron 50.0%
CACTTTCTTGGACCTCACCA+TGG + chr2_4:16079843-16079862 Msa0317910:intron 50.0%
TTTCTTGGACCTCACCATGG+CGG + chr2_4:16079846-16079865 Msa0317910:intron 50.0%
AATGCTAAGAACTCCCGCCA+TGG - chr2_4:16079863-16079882 None:intergenic 50.0%
GCTGTAGGGTATAGGTGTCA+AGG + chr2_4:16079941-16079960 Msa0317910:intron 50.0%
GCGCATAGAAGCAGAGAAAG+TGG + chr2_4:16080474-16080493 Msa0317910:CDS 50.0%
ATGGAAGAGTCAGCCTCTTC+AGG - chr2_4:16080607-16080626 None:intergenic 50.0%
CAGGTTTCACCATGCTCTCT+TGG + chr2_4:16080651-16080670 Msa0317910:CDS 50.0%
!! CAAGAGCACCTTCTTCAAGG+TGG - chr2_4:16080681-16080700 None:intergenic 50.0%
! TCGGAATGCCCTTTTTGACG+GGG - chr2_4:16080729-16080748 None:intergenic 50.0%
TCCGAATATGCTTCTCCACG+AGG + chr2_4:16080744-16080763 Msa0317910:CDS 50.0%
TATGCTTCTCCACGAGGATG+AGG + chr2_4:16080750-16080769 Msa0317910:CDS 50.0%
GCGAGCAAAGTGTGCATTCT+GGG + chr2_4:16076695-16076714 Msa0317910:CDS 50.0%
GCCACTGCGAGTAAATACGT+AGG - chr2_4:16076723-16076742 None:intergenic 50.0%
GCGAGCGATGAATGTCAGTA+CGG + chr2_4:16076837-16076856 Msa0317910:intron 50.0%
GTCAGAAGAGGAGAACCAGA+GGG - chr2_4:16077145-16077164 None:intergenic 50.0%
AGTCAGAAGAGGAGAACCAG+AGG - chr2_4:16077146-16077165 None:intergenic 50.0%
TTAGAAGTTGGGCTGTGAGG+TGG - chr2_4:16077273-16077292 None:intergenic 50.0%
TAAGACGGGCGTTACAGTAG+TGG + chr2_4:16077505-16077524 Msa0317910:intron 50.0%
AAGACGGGCGTTACAGTAGT+GGG + chr2_4:16077506-16077525 Msa0317910:intron 50.0%
!! CAGTAGTGGGTGGTTCTTGT+CGG + chr2_4:16077519-16077538 Msa0317910:intron 50.0%
GAGGATATTGTTGAGCACGC+TGG + chr2_4:16078361-16078380 Msa0317910:CDS 50.0%
AAGCGACCCACCTGATTAGT+TGG + chr2_4:16078667-16078686 Msa0317910:intron 50.0%
CACTTTCTTGGACCTCACCA+TGG + chr2_4:16079843-16079862 Msa0317910:intron 50.0%
TTTCTTGGACCTCACCATGG+CGG + chr2_4:16079846-16079865 Msa0317910:intron 50.0%
AATGCTAAGAACTCCCGCCA+TGG - chr2_4:16079863-16079882 None:intergenic 50.0%
GCTGTAGGGTATAGGTGTCA+AGG + chr2_4:16079941-16079960 Msa0317910:intron 50.0%
GCGCATAGAAGCAGAGAAAG+TGG + chr2_4:16080474-16080493 Msa0317910:CDS 50.0%
ATGGAAGAGTCAGCCTCTTC+AGG - chr2_4:16080607-16080626 None:intergenic 50.0%
CAGGTTTCACCATGCTCTCT+TGG + chr2_4:16080651-16080670 Msa0317910:CDS 50.0%
!! CAAGAGCACCTTCTTCAAGG+TGG - chr2_4:16080681-16080700 None:intergenic 50.0%
! TCGGAATGCCCTTTTTGACG+GGG - chr2_4:16080729-16080748 None:intergenic 50.0%
TCCGAATATGCTTCTCCACG+AGG + chr2_4:16080744-16080763 Msa0317910:CDS 50.0%
TATGCTTCTCCACGAGGATG+AGG + chr2_4:16080750-16080769 Msa0317910:CDS 50.0%
GGCGAGCAAAGTGTGCATTC+TGG + chr2_4:16076694-16076713 Msa0317910:CDS 55.0%
GTGGCGAGTTATTCTGCTCG+CGG + chr2_4:16076738-16076757 Msa0317910:CDS 55.0%
TCACTCGCAGTTGCGAGTTC+TGG + chr2_4:16076776-16076795 Msa0317910:CDS 55.0%
CACTCGCAGTTGCGAGTTCT+GGG + chr2_4:16076777-16076796 Msa0317910:CDS 55.0%
ATGCGAGTGTTCTTGCTCGC+AGG + chr2_4:16076813-16076832 Msa0317910:intron 55.0%
GAATCGATAGCCTCTCCCTC+TGG + chr2_4:16077127-16077146 Msa0317910:intron 55.0%
AAGAGGAGAACCAGAGGGAG+AGG - chr2_4:16077140-16077159 None:intergenic 55.0%
!!! TGAGCACGCTGGTTTTTCCC+AGG + chr2_4:16078372-16078391 Msa0317910:CDS 55.0%
TTCTTGGACCTCACCATGGC+GGG + chr2_4:16079847-16079866 Msa0317910:intron 55.0%
TAAGAACTCCCGCCATGGTG+AGG - chr2_4:16079858-16079877 None:intergenic 55.0%
!! TGTGGAAGCATCGCGAGCAA+TGG + chr2_4:16080567-16080586 Msa0317910:CDS 55.0%
!! GTGGAAGCATCGCGAGCAAT+GGG + chr2_4:16080568-16080587 Msa0317910:CDS 55.0%
! AGAGGCTGACTCTTCCATGC+TGG + chr2_4:16080609-16080628 Msa0317910:CDS 55.0%
GGTGGAGTTCCAAGAGAGCA+TGG - chr2_4:16080663-16080682 None:intergenic 55.0%
! GCTCTTGTTTGCCCAGAGAC+TGG + chr2_4:16080694-16080713 Msa0317910:CDS 55.0%
ACGACGCTTCCCCGTCAAAA+AGG + chr2_4:16080717-16080736 Msa0317910:CDS 55.0%
CGACGCTTCCCCGTCAAAAA+GGG + chr2_4:16080718-16080737 Msa0317910:CDS 55.0%
GGCGAGCAAAGTGTGCATTC+TGG + chr2_4:16076694-16076713 Msa0317910:CDS 55.0%
GTGGCGAGTTATTCTGCTCG+CGG + chr2_4:16076738-16076757 Msa0317910:CDS 55.0%
TCACTCGCAGTTGCGAGTTC+TGG + chr2_4:16076776-16076795 Msa0317910:CDS 55.0%
CACTCGCAGTTGCGAGTTCT+GGG + chr2_4:16076777-16076796 Msa0317910:CDS 55.0%
ATGCGAGTGTTCTTGCTCGC+AGG + chr2_4:16076813-16076832 Msa0317910:intron 55.0%
GAATCGATAGCCTCTCCCTC+TGG + chr2_4:16077127-16077146 Msa0317910:intron 55.0%
AAGAGGAGAACCAGAGGGAG+AGG - chr2_4:16077140-16077159 None:intergenic 55.0%
!!! TGAGCACGCTGGTTTTTCCC+AGG + chr2_4:16078372-16078391 Msa0317910:CDS 55.0%
TTCTTGGACCTCACCATGGC+GGG + chr2_4:16079847-16079866 Msa0317910:intron 55.0%
TAAGAACTCCCGCCATGGTG+AGG - chr2_4:16079858-16079877 None:intergenic 55.0%
!! TGTGGAAGCATCGCGAGCAA+TGG + chr2_4:16080567-16080586 Msa0317910:CDS 55.0%
!! GTGGAAGCATCGCGAGCAAT+GGG + chr2_4:16080568-16080587 Msa0317910:CDS 55.0%
! AGAGGCTGACTCTTCCATGC+TGG + chr2_4:16080609-16080628 Msa0317910:CDS 55.0%
GGTGGAGTTCCAAGAGAGCA+TGG - chr2_4:16080663-16080682 None:intergenic 55.0%
! GCTCTTGTTTGCCCAGAGAC+TGG + chr2_4:16080694-16080713 Msa0317910:CDS 55.0%
ACGACGCTTCCCCGTCAAAA+AGG + chr2_4:16080717-16080736 Msa0317910:CDS 55.0%
CGACGCTTCCCCGTCAAAAA+GGG + chr2_4:16080718-16080737 Msa0317910:CDS 55.0%
! ACGGGCGTTACAGTAGTGGG+TGG + chr2_4:16077509-16077528 Msa0317910:intron 60.0%
ACTCACCGGAACGGCGTGAT+CGG - chr2_4:16079197-16079216 None:intergenic 60.0%
!! GGAAGCGTCGTCCAGTCTCT+GGG - chr2_4:16080708-16080727 None:intergenic 60.0%
! ACGGGCGTTACAGTAGTGGG+TGG + chr2_4:16077509-16077528 Msa0317910:intron 60.0%
ACTCACCGGAACGGCGTGAT+CGG - chr2_4:16079197-16079216 None:intergenic 60.0%
!! GGAAGCGTCGTCCAGTCTCT+GGG - chr2_4:16080708-16080727 None:intergenic 60.0%
ACCCACCGATCACGCCGTTC+CGG + chr2_4:16079189-16079208 Msa0317910:CDS 65.0%
ACCGGAACGGCGTGATCGGT+GGG - chr2_4:16079193-16079212 None:intergenic 65.0%
!! GGGAAGCGTCGTCCAGTCTC+TGG - chr2_4:16080709-16080728 None:intergenic 65.0%
ACCCACCGATCACGCCGTTC+CGG + chr2_4:16079189-16079208 Msa0317910:CDS 65.0%
ACCGGAACGGCGTGATCGGT+GGG - chr2_4:16079193-16079212 None:intergenic 65.0%
!! GGGAAGCGTCGTCCAGTCTC+TGG - chr2_4:16080709-16080728 None:intergenic 65.0%
GCTCGCGGTTGCGAGCTCAC+AGG + chr2_4:16076753-16076772 Msa0317910:CDS 70.0%
! ATCGGTGGGTGGCGGCGATG+TGG - chr2_4:16079179-16079198 None:intergenic 70.0%
ACGGCGTGATCGGTGGGTGG+CGG - chr2_4:16079187-16079206 None:intergenic 70.0%
GGAACGGCGTGATCGGTGGG+TGG - chr2_4:16079190-16079209 None:intergenic 70.0%
CACCGGAACGGCGTGATCGG+TGG - chr2_4:16079194-16079213 None:intergenic 70.0%
GCTCGCGGTTGCGAGCTCAC+AGG + chr2_4:16076753-16076772 Msa0317910:CDS 70.0%
! ATCGGTGGGTGGCGGCGATG+TGG - chr2_4:16079179-16079198 None:intergenic 70.0%
ACGGCGTGATCGGTGGGTGG+CGG - chr2_4:16079187-16079206 None:intergenic 70.0%
GGAACGGCGTGATCGGTGGG+TGG - chr2_4:16079190-16079209 None:intergenic 70.0%
CACCGGAACGGCGTGATCGG+TGG - chr2_4:16079194-16079213 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 16076692 16080777 16076692 ID=Msa0317910;Name=Msa0317910
chr2_4 mRNA 16076692 16080777 16076692 ID=Msa0317910-mRNA-1;Parent=Msa0317910;Name=Msa0317910-mRNA-1;_AED=0.41;_eAED=0.42;_QI=0|0|0|0.4|1|1|5|0|215
chr2_4 exon 16076692 16076798 16076692 ID=Msa0317910-mRNA-1:exon:6024;Parent=Msa0317910-mRNA-1
chr2_4 exon 16077128 16077194 16077128 ID=Msa0317910-mRNA-1:exon:6025;Parent=Msa0317910-mRNA-1
chr2_4 exon 16078340 16078393 16078340 ID=Msa0317910-mRNA-1:exon:6026;Parent=Msa0317910-mRNA-1
chr2_4 exon 16079118 16079210 16079118 ID=Msa0317910-mRNA-1:exon:6027;Parent=Msa0317910-mRNA-1
chr2_4 exon 16080451 16080777 16080451 ID=Msa0317910-mRNA-1:exon:6028;Parent=Msa0317910-mRNA-1
chr2_4 CDS 16076692 16076798 16076692 ID=Msa0317910-mRNA-1:cds;Parent=Msa0317910-mRNA-1
chr2_4 CDS 16077128 16077194 16077128 ID=Msa0317910-mRNA-1:cds;Parent=Msa0317910-mRNA-1
chr2_4 CDS 16078340 16078393 16078340 ID=Msa0317910-mRNA-1:cds;Parent=Msa0317910-mRNA-1
chr2_4 CDS 16079118 16079210 16079118 ID=Msa0317910-mRNA-1:cds;Parent=Msa0317910-mRNA-1
chr2_4 CDS 16080451 16080777 16080451 ID=Msa0317910-mRNA-1:cds;Parent=Msa0317910-mRNA-1
Gene Sequence

>Msa0317910

ATGGCGAGCAAAGTGTGCATTCTGGGTTCCTACGTATTTACTCGCAGTGGCGAGTTATTCTGCTCGCGGTTGCGAGCTCACAGGTCACTCGCAGTTGCGAGTTCTGGAATCGATAGCCTCTCCCTCTGGTTCTCCTCTTCTGACTTTTCTCCCTTTTCTCCAAAAGCGTTTCACAATGTTGATAATCAACCTCAAGAGGATATTGTTGAGCACGCTGGTTTTTCCCAGCAATCTGAAACATCGCCGCAAAACCCTTTCTCTCTACGAAGAGTTGAGTCGTCTGTGTCCACATCGCCGCCACCCACCGATCACGCCGTTCCGGGTGTGGTGAATGGATTTCCATTGCGCATAGAAGCAGAGAAAGTGGTGGAAAAGAATGTGGAAATGAATGGTGACTTTCTGAAAAAGATGTTTGAGAAGATTGAGTGGAAGGCTTTTGTGGAAGCATCGCGAGCAATGGGATACACTGAACTACCTGAAGAGGCTGACTCTTCCATGCTGGATTCAAATGAATTTCTGAACAGGTTTCACCATGCTCTCTTGGAACTCCACCTTGAAGAAGGTGCTCTTGTTTGCCCAGAGACTGGACGACGCTTCCCCGTCAAAAAGGGCATTCCGAATATGCTTCTCCACGAGGATGAGGTCTGA

Protein sequence

>Msa0317910

MASKVCILGSYVFTRSGELFCSRLRAHRSLAVASSGIDSLSLWFSSSDFSPFSPKAFHNVDNQPQEDIVEHAGFSQQSETSPQNPFSLRRVESSVSTSPPPTDHAVPGVVNGFPLRIEAEKVVEKNVEMNGDFLKKMFEKIEWKAFVEASRAMGYTELPEEADSSMLDSNEFLNRFHHALLELHLEEGALVCPETGRRFPVKKGIPNMLLHEDEV*