AlfalfaGEDB | Msa0230490

M. sativa cultivar zhongmu-4 / Msa0230490

KEGG: K02883
GO: -
PFAM: PF17135.7

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230490	XP_003591163.1	98.930	187	2	0	1	187	1	187	6.76e-129	370

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230490	sp\|Q940B0\|RL183_ARATH	83.957	187	30	0	1	187	1	187	1.15e-112	321

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230490	G7I8R4	98.930	187	2	0	1	187	1	187	3.23e-129	370

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0230490	0.854834	9.453728e-62	-8.615850e-47
Msa0002790	Msa0230490	0.864428	1.224470e-64	-8.615850e-47
Msa0003780	Msa0230490	0.840903	6.569144e-58	-8.615850e-47
Msa0011740	Msa0230490	0.807603	4.663435e-50	-8.615850e-47
Msa0022970	Msa0230490	0.840029	1.112088e-57	-8.615850e-47
Msa0027260	Msa0230490	0.821763	3.396490e-53	-8.615850e-47
Msa0032780	Msa0230490	0.949513	1.092265e-107	-8.615850e-47
Msa0032810	Msa0230490	0.874209	8.074047e-68	-8.615850e-47
Msa0038090	Msa0230490	0.822108	2.825613e-53	-8.615850e-47
Msa0040690	Msa0230490	0.830789	2.408924e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230490	MtrunA17_Chr1g0192271	98.930	187	2	0	1	187	1	187	6.22e-133	370
Msa0230490	MtrunA17_Chr7g0269451	92.021	188	14	1	1	187	1	188	1.91e-122	343
Msa0230490	MtrunA17_Chr7g0272381	85.561	187	27	0	1	187	1	187	6.27e-117	329

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0230490	AT5G27850.1	83.957	187	30	0	1	187	1	187	1.16e-113	321
Msa0230490	AT3G05590.1	83.422	187	31	0	1	187	1	187	3.89e-113	320
Msa0230490	AT2G47570.1	76.344	186	43	1	3	187	1	186	1.56e-100	288
Msa0230490	AT3G05590.3	82.836	134	23	0	54	187	1	134	3.91e-79	232
Msa0230490	AT3G05590.2	82.836	134	23	0	54	187	1	134	3.91e-79	232
Msa0230490	AT5G27850.2	82.090	134	24	0	54	187	1	134	1.39e-77	228

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Find 74 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATCCACAGAAAATA+AGG	0.228828	2_2:+2683776	None:intergenic
AAAGTCAAGGAAGATTGAGA+AGG	0.626317	2_2:-2683957	Msa0230490:CDS
AACACATCCACAGAAAATAA+GGG	0.518981	2_2:+2683777	None:intergenic
AACCTCCACTATCTTTGTCA+AGG	0.576324	2_2:-2685020	Msa0230490:CDS
AACCTTGACAAAGATAGTGG+AGG	0.643571	2_2:+2685018	None:intergenic
AAGCACTTTGGTCGTGCTCC+TGG	0.452826	2_2:-2684016	Msa0230490:CDS
AAGCTTGAGATAGATATCAT+TGG	0.447582	2_2:+2685884	None:intergenic
AAGGTTGCTGCTGGTAATAC+AGG	0.444634	2_2:+2686103	None:intergenic
AAGGTTTGGTGTGGCTTTGT+GGG	0.474825	2_2:+2683990	None:intergenic
ACTGCTTCACGAGCATTCTT+TGG	0.271538	2_2:+2684040	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGTAAGAAACAGAAACAA+TGG	+	chr2_2:2683765-2683784	None:intergenic	30.0%
ACGTTTGAATTGAACTTTGT+AGG	-	chr2_2:2683780-2683799	Msa0230490:three_prime_UTR	30.0%
CGTTTGAATTGAACTTTGTA+GGG	-	chr2_2:2683781-2683800	Msa0230490:three_prime_UTR	30.0%
AAGCTTGAGATAGATATCAT+TGG	+	chr2_2:2683863-2683882	None:intergenic	30.0%
TTGCTTACATTTCAACATAG+AGG	+	chr2_2:2684146-2684165	None:intergenic	30.0%
TATTATGGGTGTGTTTGTTT+AGG	-	chr2_2:2684249-2684268	Msa0230490:intron	30.0%
TGAAATTTACCTATGTAGGA+AGG	-	chr2_2:2684852-2684871	Msa0230490:CDS	30.0%
TGTGTAACTATTGTGATGTA+AGG	-	chr2_2:2685599-2685618	Msa0230490:intron	30.0%
AACACATCCACAGAAAATAA+GGG	+	chr2_2:2685970-2685989	None:intergenic	30.0%
AAACACATCCACAGAAAATA+AGG	+	chr2_2:2685971-2685990	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	2683603	2686163	2683603	ID=Msa0230490;Name=Msa0230490
chr2_2	mRNA	2683603	2686163	2683603	ID=Msa0230490-mRNA-1;Parent=Msa0230490;Name=Msa0230490-mRNA-1;_AED=0.33;_eAED=0.33;_QI=99\|1\|1\|1\|1\|1\|5\|316\|187
chr2_2	exon	2683603	2684077	2683603	ID=Msa0230490-mRNA-1:exon:892;Parent=Msa0230490-mRNA-1
chr2_2	exon	2684714	2684896	2684714	ID=Msa0230490-mRNA-1:exon:891;Parent=Msa0230490-mRNA-1
chr2_2	exon	2684996	2685124	2684996	ID=Msa0230490-mRNA-1:exon:890;Parent=Msa0230490-mRNA-1
chr2_2	exon	2685875	2685964	2685875	ID=Msa0230490-mRNA-1:exon:889;Parent=Msa0230490-mRNA-1
chr2_2	exon	2686062	2686163	2686062	ID=Msa0230490-mRNA-1:exon:888;Parent=Msa0230490-mRNA-1
chr2_2	five_prime_UTR	2686065	2686163	2686065	ID=Msa0230490-mRNA-1:five_prime_utr;Parent=Msa0230490-mRNA-1
chr2_2	CDS	2686062	2686064	2686062	ID=Msa0230490-mRNA-1:cds;Parent=Msa0230490-mRNA-1
chr2_2	CDS	2685875	2685964	2685875	ID=Msa0230490-mRNA-1:cds;Parent=Msa0230490-mRNA-1
chr2_2	CDS	2684996	2685124	2684996	ID=Msa0230490-mRNA-1:cds;Parent=Msa0230490-mRNA-1
chr2_2	CDS	2684714	2684896	2684714	ID=Msa0230490-mRNA-1:cds;Parent=Msa0230490-mRNA-1
chr2_2	CDS	2683919	2684077	2683919	ID=Msa0230490-mRNA-1:cds;Parent=Msa0230490-mRNA-1
chr2_2	three_prime_UTR	2683603	2683918	2683603	ID=Msa0230490-mRNA-1:three_prime_utr;Parent=Msa0230490-mRNA-1

Gene Sequence

>Msa0230490

ATGGGTATCGATCTTAAGGCAGGAGGTAAGAACAAAAAAACAAAAAGAACAGCACCAAAATCCAATGATATCTATCTCAAGCTTTTGGTCAAGCTTTATCGGTTCCTTGTTCGGAGAACTGGCAGCAATTTCAATGCTGTTATACTCAAGAGGTTGTTTATGAGCAAGGTTAACAAACCTCCACTATCTTTGTCAAGGTTGATCAAGTATACCAATGGCAAGGAAGGTAAAATTGCTGTCGTGGTGGGGGCTATAACTGATGATGTCCGTGTTAATGAAGTTCCAGCCATCAAGGTTACAGCACTCAGGTTTACCGAGAAGGCAAGGGCAAGAATAGAAAGGGCTGGTGGTGAATGCTTAACATTCGATCAGTTGGCTCTTAGGGCCCCTCTGGGACAAAACACGGTCCTTCTTAGAGGCCCAAAGAATGCTCGTGAAGCAGTTAAGCACTTTGGTCGTGCTCCTGGTGTCCCACAAAGCCACACCAAACCTTATGTTAGAGGAAAGTCAAGGAAGATTGAGAAGGCTAGAGGAAAGAGGAAGAGCAGAGGATTCAGAGTTTGA

Protein sequence

>Msa0230490

MGIDLKAGGKNKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKYTNGKEGKIAVVVGAITDDVRVNEVPAIKVTALRFTEKARARIERAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGRAPGVPQSHTKPYVRGKSRKIEKARGKRKSRGFRV*