AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0847540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847540 MtrunA17_Chr5g0420361 87.890 834 66 4 1 829 1 804 0.0 1405
Msa0847540 MtrunA17_Chr6g0472441 69.182 782 169 12 58 830 9 727 0.0 1026
Msa0847540 MtrunA17_Chr1g0211711 72.440 664 156 9 167 824 409 1051 0.0 967
Msa0847540 MtrunA17_Chr1g0183311 70.147 680 180 8 164 824 207 882 0.0 949
Msa0847540 MtrunA17_Chr5g0426961 65.861 662 183 8 169 823 209 834 0.0 843
Msa0847540 MtrunA17_Chr1g0211661 62.149 605 192 8 167 764 291 865 0.0 725
Msa0847540 MtrunA17_Chr1g0211691 66.011 559 162 8 164 712 405 945 0.0 719
Msa0847540 MtrunA17_Chr5g0448301 55.513 526 183 9 214 734 152 631 0.0 544
Msa0847540 MtrunA17_Chr2g0289121 47.407 675 276 20 161 821 210 819 7.33e-175 526
Msa0847540 MtrunA17_Chr4g0075261 44.748 695 298 20 161 821 222 864 7.99e-173 522
Msa0847540 MtrunA17_Chr7g0275771 42.582 728 330 20 175 821 204 924 1.56e-169 516
Msa0847540 MtrunA17_Chr2g0289031 51.651 424 160 8 405 821 8 393 1.32e-125 383
Msa0847540 MtrunA17_Chr1g0192011 34.880 668 359 17 184 825 347 964 1.55e-111 365
Msa0847540 MtrunA17_Chr2g0281051 34.667 675 380 19 183 813 289 946 4.81e-100 333
Msa0847540 MtrunA17_Chr1g0147021 41.401 471 233 13 164 622 927 1366 1.21e-90 314
Msa0847540 MtrunA17_Chr1g0147021 61.176 170 59 2 646 812 1521 1686 4.40e-56 210
Msa0847540 MtrunA17_Chr4g0048531 35.524 563 286 18 321 820 727 1275 3.88e-87 302
Msa0847540 MtrunA17_Chr4g0048531 42.500 80 45 1 183 262 347 425 5.62e-13 73.2
Msa0847540 MtrunA17_Chr8g0364421 47.692 260 98 7 209 465 3 227 3.77e-62 209
Msa0847540 MtrunA17_Chr1g0211701 79.310 116 24 0 710 825 4 119 5.72e-60 201
Msa0847540 MtrunA17_Chr7g0231061 56.886 167 68 2 468 630 11 177 4.64e-50 175
Msa0847540 MtrunA17_Chr8g0340381 60.819 171 46 3 503 670 36 188 4.83e-50 174
Msa0847540 MtrunA17_Chr8g0361381 52.632 190 79 6 401 586 26 208 5.37e-49 172
Msa0847540 MtrunA17_Chr2g0289091 72.072 111 31 0 676 786 310 420 6.35e-49 179
Msa0847540 MtrunA17_Chr2g0289091 54.483 145 61 3 479 619 20 163 1.05e-38 149
Msa0847540 MtrunA17_Chr8g0361391 73.864 88 22 1 677 764 51 137 6.32e-40 145
Msa0847540 MtrunA17_Chr1g0211671 74.603 63 16 0 763 825 15 77 6.11e-26 103
Msa0847540 MtrunA17_Chr2g0289041 41.420 169 86 6 161 323 35 196 7.08e-26 106
Msa0847540 MtrunA17_Chr3g0119761 59.740 77 31 0 572 648 55 131 4.84e-20 87.0
Msa0847540 MtrunA17_Chr2g0289101 38.760 129 68 5 234 357 8 130 4.60e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0847540 AT3G07610.1 46.262 709 294 14 157 813 210 883 0.0 583
Msa0847540 AT3G07610.3 44.780 728 299 15 157 813 210 905 0.0 565
Msa0847540 AT1G62310.1 48.341 633 276 15 182 805 288 878 0.0 559
Msa0847540 AT1G11950.1 47.077 650 289 17 182 825 272 872 0.0 551
Msa0847540 AT1G11950.3 47.077 650 289 17 182 825 272 872 0.0 551
Msa0847540 AT4G00990.1 43.423 707 325 19 167 820 144 828 9.61e-168 508
Msa0847540 AT1G11950.2 45.078 579 263 17 182 754 272 801 4.11e-148 456
Msa0847540 AT4G00990.3 42.314 657 304 19 167 770 144 778 7.04e-145 447
Msa0847540 AT4G00990.2 42.681 649 297 19 167 762 144 770 7.11e-144 444
Msa0847540 AT3G07610.2 42.008 488 224 11 157 592 210 690 1.15e-104 341
Msa0847540 AT1G09060.2 31.459 658 377 19 184 821 287 890 1.20e-84 290
Msa0847540 AT1G09060.1 31.459 658 377 19 184 821 287 890 1.20e-84 290
Msa0847540 AT1G09060.4 31.459 658 377 19 184 821 301 904 1.27e-84 291
Msa0847540 AT1G09060.3 31.459 658 377 19 184 821 301 904 1.27e-84 291
Msa0847540 AT4G21430.1 31.659 657 376 21 183 820 309 911 1.75e-72 256

Find 180 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGACTTTACCTGCTTTAA+AGG 0.105810 5_4:+29778029 None:intergenic
GAAAAGAACACCTTGTATTT+TGG 0.170255 5_4:+29780683 None:intergenic
TTCAAATATTCCTTCAATTT+AGG 0.182508 5_4:+29778089 None:intergenic
ACCAACTCAGAAATGCAATT+TGG 0.218573 5_4:+29779748 None:intergenic
AAAGTGCATGATTTCTTTAC+TGG 0.224783 5_4:-29779194 Msa0847540:CDS
GAATATTTGAAGAAGCATTT+TGG 0.224964 5_4:-29778077 Msa0847540:CDS
ACCATGATCACCTTCATTAT+TGG 0.236171 5_4:+29779798 None:intergenic
TTGCCTACCGTTCAATTTAC+AGG 0.240147 5_4:-29775223 Msa0847540:CDS
CAGAGAAGAAGGAGGCTTTA+AGG 0.245987 5_4:-29781507 Msa0847540:CDS
TCACCTTCATTATTGGCTTT+TGG 0.260652 5_4:+29779805 None:intergenic
AGATCTAATTGTCTTAAATA+TGG 0.261093 5_4:+29780735 None:intergenic
GGATCTGTATATTCTTTATA+TGG 0.267565 5_4:+29779050 None:intergenic
AGAACGTTGTTGACAATTAC+AGG 0.270674 5_4:+29779487 None:intergenic
CTTCGTCGTGGGGAGCTTCT+AGG 0.285523 5_4:-29779991 Msa0847540:CDS
TGCCGCCCAGCCTGAGATTC+TGG 0.288771 5_4:-29779878 Msa0847540:CDS
ATATTATCTTCCTTCTTAAC+AGG 0.299520 5_4:+29779643 None:intergenic
CCAACTCAGAAATGCAATTT+GGG 0.299694 5_4:+29779749 None:intergenic
TCTGTGAAATAGTGATTTAC+TGG 0.328060 5_4:+29776884 None:intergenic
CATCAAGAAAATAGTTTAGA+TGG 0.330265 5_4:-29778146 Msa0847540:CDS
CTTGATCTCTTCGAGATTAA+CGG 0.331589 5_4:+29779699 None:intergenic
AGGCAATTGATTGCTTAAAT+TGG 0.335529 5_4:-29779366 Msa0847540:CDS
AGTGATTTACTGGAAGTTTA+CGG 0.337301 5_4:+29776894 None:intergenic
TTTGGCTTCTATCTCCATTT+CGG 0.358618 5_4:+29780701 None:intergenic
CTATTTCACAGAGGACAAAT+TGG 0.360430 5_4:-29776873 Msa0847540:CDS
TTGATTAACTCAAACTCAAT+TGG 0.365985 5_4:+29779958 None:intergenic
AAGAGGCTTAAGGAGGAGTA+TGG 0.378678 5_4:-29777809 Msa0847540:intron
TTCAATGGCACTGGAGAAAA+GGG 0.397011 5_4:-29779513 Msa0847540:CDS
TTTCAATGGCACTGGAGAAA+AGG 0.401004 5_4:-29779514 Msa0847540:CDS
TCTAGAACAAATGGCCGAAA+TGG 0.406642 5_4:-29780715 Msa0847540:CDS
TTATTATTATTATCAGATAC+AGG 0.409855 5_4:+29781112 None:intergenic
TTCTTTACTGGGTACACAAA+TGG 0.410350 5_4:-29779182 Msa0847540:CDS
AAGAAAATCGAGGTAGGAAA+AGG 0.412720 5_4:-29781306 Msa0847540:CDS
CTAAAGATGAGTGTGCTTAC+TGG 0.415066 5_4:-29780186 Msa0847540:intron
GGTTAGTGATTGCATACTTA+AGG 0.418589 5_4:-29776186 Msa0847540:CDS
GTGCTCATCTGAAGCAATTA+CGG 0.419476 5_4:+29778232 None:intergenic
TCATGTTGCTAAAGTGGAAC+TGG 0.419614 5_4:-29778381 Msa0847540:CDS
GGAGCTACATGGTGATAATC+AGG 0.421783 5_4:-29778297 Msa0847540:CDS
AATTGAACGGTAGGCAAAAT+CGG 0.422487 5_4:+29775229 None:intergenic
ATGGATTTCATCAGGAGCTT+GGG 0.423317 5_4:-29778953 Msa0847540:CDS
ATAGTTTAGATGGTGCTCTC+TGG 0.426008 5_4:-29778136 Msa0847540:CDS
GTTCTTGAATTAAGTACGTC+TGG 0.427784 5_4:-29779469 Msa0847540:CDS
TATGGATTTCATCAGGAGCT+TGG 0.432373 5_4:-29778954 Msa0847540:CDS
ATTCGAAAGTGAATTGTCAT+TGG 0.434915 5_4:+29779393 None:intergenic
CCCAAATTGCATTTCTGAGT+TGG 0.436533 5_4:-29779749 Msa0847540:CDS
GCCAATAATGAAGGTGATCA+TGG 0.438610 5_4:-29779799 Msa0847540:CDS
AGGAGAAGAAGGAACCTAAT+GGG 0.439310 5_4:-29781147 Msa0847540:CDS
CTGCATGGTGAGATAATAAC+CGG 0.439698 5_4:-29779919 Msa0847540:CDS
AATGAGTAATGCAGAGAAGA+AGG 0.439727 5_4:-29781518 Msa0847540:CDS
TTTGACCGTTCCAGAATCTC+AGG 0.440046 5_4:+29779868 None:intergenic
GCTGGGAACCGATTGCCATT+TGG 0.440573 5_4:-29779441 Msa0847540:CDS
TAAGTACGTCTGGTTTAAGC+TGG 0.443003 5_4:-29779459 Msa0847540:CDS
ATTTCATCAGGAGCTTGGGC+GGG 0.443441 5_4:-29778949 Msa0847540:CDS
TTACCTTCAGATTTCTGACT+TGG 0.444429 5_4:+29777623 None:intergenic
CAATCATAAGAAGAGGCTTA+AGG 0.445426 5_4:-29777819 Msa0847540:CDS
TATTGCTTATGGATTTCATC+AGG 0.445848 5_4:-29778961 Msa0847540:CDS
GAAACTTGATTGCATGCATA+AGG 0.448780 5_4:-29781047 Msa0847540:intron
GGGGAGCTTCTAGGTGGTAC+TGG 0.450026 5_4:-29779982 Msa0847540:CDS
TTTCATCAGGAGCTTGGGCG+GGG 0.450305 5_4:-29778948 Msa0847540:CDS
AAGGAGAAGAAGGAACCTAA+TGG 0.451038 5_4:-29781148 Msa0847540:CDS
CCTTCAGATTTCTGACTTGG+TGG 0.452597 5_4:+29777626 None:intergenic
AAATACAAACAAAAGCTTCA+AGG 0.453674 5_4:-29781558 Msa0847540:five_prime_UTR
GACAAAATCAAGTGCAACCT+TGG 0.456526 5_4:+29776961 None:intergenic
ACAATTAGATCTAGAACAAA+TGG 0.456569 5_4:-29780724 Msa0847540:CDS
ACCGTTCCAGAATCTCAGGC+TGG 0.460836 5_4:+29779872 None:intergenic
CTGATGAAATGCACGCCAAA+TGG 0.462938 5_4:+29779426 None:intergenic
TAAGATAAAACGTCTGATCA+TGG 0.467077 5_4:+29777846 None:intergenic
ACTTGGTGGGCACAACCAGC+TGG 0.481226 5_4:+29777640 None:intergenic
TTTCTCAGATCAGCAGAAGA+AGG 0.482830 5_4:+29781448 None:intergenic
GCTGTAAAAGAGGAGGAAAA+TGG 0.484521 5_4:-29781184 Msa0847540:CDS
GCTTGATGTGGTAGAAAAGT+TGG 0.489208 5_4:-29776218 Msa0847540:CDS
AGCATGAGATTCATTATCTC+CGG 0.493405 5_4:+29779900 None:intergenic
GTCGCAAGGATAAGCTTGAT+TGG 0.494914 5_4:-29779160 Msa0847540:CDS
TTGTTTGAAGCCTGTTAAGA+AGG 0.498085 5_4:-29779653 Msa0847540:CDS
GATTTCATCAGGAGCTTGGG+CGG 0.499730 5_4:-29778950 Msa0847540:CDS
CTTCAGATTTCTGACTTGGT+GGG 0.500244 5_4:+29777627 None:intergenic
TGATTGCTTAAATTGGTGCC+AGG 0.502959 5_4:-29779359 Msa0847540:intron
AGCACAAGCGAGGTAAATGT+TGG 0.503431 5_4:+29781606 None:intergenic
TACGGATTTCCTCTGTCAAA+CGG 0.506035 5_4:+29776912 None:intergenic
TAGTTTAGATGGTGCTCTCT+GGG 0.506234 5_4:-29778135 Msa0847540:CDS
CTATTGTTCTCCTTTAAAGC+AGG 0.506371 5_4:-29778039 Msa0847540:intron
GCTTCAAGGAAGAAGAAACT+TGG 0.507466 5_4:-29781544 Msa0847540:five_prime_UTR
CGTTAATCTCGAAGAGATCA+AGG 0.508351 5_4:-29779698 Msa0847540:CDS
AGCTATTGAAATTGAATGAT+CGG 0.510634 5_4:-29779133 Msa0847540:CDS
GTTGACTCATGTTGCTAAAG+TGG 0.514296 5_4:-29778387 Msa0847540:CDS
GCTCCCTCTTGTCTTGCTCA+AGG 0.519343 5_4:+29778315 None:intergenic
AAGGTATTCTAGCATATACT+TGG 0.523983 5_4:+29780761 None:intergenic
TAGTTCTGAAGCTGTAAAAG+AGG 0.524173 5_4:-29781194 Msa0847540:CDS
ATTGTCTTAAATATGGAAGA+AGG 0.525989 5_4:+29780742 None:intergenic
TGTATATTCTTTATATGGCA+AGG 0.530614 5_4:+29779055 None:intergenic
TTATGTAGATCAATAGCCTT+AGG 0.531000 5_4:+29779559 None:intergenic
AGAGGATGTACCTAAATTGA+AGG 0.534405 5_4:-29778099 Msa0847540:CDS
GGTAGTCAAATATCGAGGTC+TGG 0.539728 5_4:+29780067 None:intergenic
GATCTGTAGGAATTGAGCCT+TGG 0.543618 5_4:-29777699 Msa0847540:intron
ATAAAACGTCTGATCATGGA+TGG 0.544900 5_4:+29777850 None:intergenic
AGAAGAAAGAAAATCGAGGT+AGG 0.546704 5_4:-29781312 Msa0847540:CDS
AGAAGAAAGAAAATCGTGGT+AGG 0.547967 5_4:-29781234 Msa0847540:CDS
GCACAATAGTGTTCGAGTCA+TGG 0.549629 5_4:-29778213 Msa0847540:CDS
GCACAAGCGAGGTAAATGTT+GGG 0.550757 5_4:+29781607 None:intergenic
ATGGAGAGACCAATGTTGAC+AGG 0.554177 5_4:-29778274 Msa0847540:CDS
CGAGTCATGGAAAATGAAAG+TGG 0.554587 5_4:-29778200 Msa0847540:CDS
TGGATTATGTGATGCGAAGG+TGG 0.558113 5_4:-29778180 Msa0847540:CDS
AATGCACGCCAAATGGCAAT+CGG 0.561501 5_4:+29779433 None:intergenic
TGTCCAAAAGCCAATAATGA+AGG 0.567765 5_4:-29779808 Msa0847540:CDS
CAATTCACTTTCGAATGTGA+AGG 0.569546 5_4:-29779386 Msa0847540:CDS
GCACCTTGAGCAAGACAAGA+GGG 0.570458 5_4:-29778318 Msa0847540:CDS
TTACTAACAATCATAAGAAG+AGG 0.571805 5_4:-29777826 Msa0847540:CDS
GTTGCTATGAGCTTCGTCGT+GGG 0.576036 5_4:-29780002 Msa0847540:CDS
CCGTTCCAGAATCTCAGGCT+GGG 0.577409 5_4:+29779873 None:intergenic
AAGTGCATGATTTCTTTACT+GGG 0.579389 5_4:-29779193 Msa0847540:CDS
GATAATATACTGAATAACAC+AGG 0.580018 5_4:-29779628 Msa0847540:CDS
GTAACATTCGTCTCAGCTCA+AGG 0.580642 5_4:+29779773 None:intergenic
AGGTTAAGATCACCTTTGAA+AGG 0.581619 5_4:+29779029 None:intergenic
GAATATACAGATCCTTTCAA+AGG 0.581672 5_4:-29779041 Msa0847540:CDS
ATTATCAAGCCTGTCAACAT+TGG 0.582130 5_4:+29778265 None:intergenic
GAGTGGCATGTAGGCAGTGA+TGG 0.586420 5_4:-29779841 Msa0847540:CDS
CCGTTCAATTTACAGGTCTG+AGG 0.586479 5_4:-29775216 Msa0847540:CDS
AAGTACGTCTGGTTTAAGCT+GGG 0.588648 5_4:-29779458 Msa0847540:CDS
GAGATAGAAGCCAAAATACA+AGG 0.589698 5_4:-29780693 Msa0847540:intron
AAGAAGAAGAAAGAAAATCG+TGG 0.591308 5_4:-29781238 Msa0847540:CDS
TTTCACAGAGGACAAATTGG+AGG 0.591359 5_4:-29776870 Msa0847540:intron
CAAGACAAGAGGGAGCTACA+TGG 0.591607 5_4:-29778308 Msa0847540:CDS
TCAAAATCTGAGTGGCATGT+AGG 0.592624 5_4:-29779850 Msa0847540:CDS
CATGCAGATAATCTTGCCCT+CGG 0.592662 5_4:+29779935 None:intergenic
CCTCAGACCTGTAAATTGAA+CGG 0.597274 5_4:+29775216 None:intergenic
TTCTGAAGCTGTAAAAGAGG+AGG 0.597856 5_4:-29781191 Msa0847540:CDS
TAGAAAAGTTGGAGAATGCA+AGG 0.598312 5_4:-29776207 Msa0847540:CDS
TATCAAGCAGCTTCGCAGCA+AGG 0.599785 5_4:+29779009 None:intergenic
CGAGGGCAAGATTATCTGCA+TGG 0.602428 5_4:-29779934 Msa0847540:CDS
TTTGTCTCTCCCGAAAATGT+CGG 0.604807 5_4:-29776944 Msa0847540:CDS
GTGAAGAAGAAAGAAAATCG+AGG 0.605425 5_4:-29781316 Msa0847540:CDS
TTGCTATGAGCTTCGTCGTG+GGG 0.607792 5_4:-29780001 Msa0847540:CDS
GATGGAAACTGAAACAGCGC+AGG 0.608691 5_4:-29781398 Msa0847540:CDS
TGTTGCTATGAGCTTCGTCG+TGG 0.611387 5_4:-29780003 Msa0847540:CDS
TCATTCAATTTCAATAGCTG+AGG 0.611928 5_4:+29779137 None:intergenic
AGCTTCTGAACAAAACTCCA+AGG 0.613881 5_4:+29777682 None:intergenic
AGACCTGTAAATTGAACGGT+AGG 0.614169 5_4:+29775220 None:intergenic
AGCACCTTGAGCAAGACAAG+AGG 0.618569 5_4:-29778319 Msa0847540:CDS
AGGATATGAACTCGGTACAA+TGG 0.619500 5_4:+29779078 None:intergenic
GAGTAATGCAGAGAAGAAGG+AGG 0.621102 5_4:-29781515 Msa0847540:CDS
TAAAGTGGAACTGGAAAATG+TGG 0.621317 5_4:-29778372 Msa0847540:CDS
ATTATTTGCTAGCACAAGCG+AGG 0.623107 5_4:+29781596 None:intergenic
TGTAAATAAGAGTAAAGTGG+TGG 0.623580 5_4:-29781347 Msa0847540:CDS
GAAGCAATTACGGAAGAAGA+CGG 0.626484 5_4:+29778242 None:intergenic
TAAAACGTCTGATCATGGAT+GGG 0.626621 5_4:+29777851 None:intergenic
GAGTTTGAGTTAATCAACCG+AGG 0.628019 5_4:-29779952 Msa0847540:CDS
TGGGTACACAAATGGTCGCA+AGG 0.631643 5_4:-29779174 Msa0847540:CDS
TGCTGTAAATAAGAGTAAAG+TGG 0.634537 5_4:-29781350 Msa0847540:CDS
TCATAAGAAGAGGCTTAAGG+AGG 0.634907 5_4:-29777816 Msa0847540:CDS
CTACATGGTGATAATCAGGA+TGG 0.636072 5_4:-29778293 Msa0847540:CDS
CAACTCAGAAATGCAATTTG+GGG 0.637874 5_4:+29779750 None:intergenic
TGATCTACATAATCACGAGA+AGG 0.638587 5_4:-29779548 Msa0847540:CDS
CCACCAAGTCAGAAATCTGA+AGG 0.640431 5_4:-29777626 Msa0847540:intron
GATTGCATACTTAAGGCCCA+AGG 0.648619 5_4:-29776179 Msa0847540:intron
TATACTGAATAACACAGGGA+AGG 0.649723 5_4:-29779623 Msa0847540:CDS
AGTTTGAGTTAATCAACCGA+GGG 0.650492 5_4:-29779951 Msa0847540:CDS
GATACATTACAAAGGAACAT+CGG 0.651806 5_4:+29775190 None:intergenic
CCCAGCCTGAGATTCTGGAA+CGG 0.653382 5_4:-29779873 Msa0847540:CDS
TTCCAGAATCTCAGGCTGGG+CGG 0.655812 5_4:+29779876 None:intergenic
CATAGCAACAGCGAAGACAA+AGG 0.659485 5_4:+29780016 None:intergenic
TGAGTGCTTCCGTTTGACAG+AGG 0.660380 5_4:-29776921 Msa0847540:CDS
ATGAACTCGGTACAATGGCG+AGG 0.661487 5_4:+29779083 None:intergenic
CGTCGTGGGGAGCTTCTAGG+TGG 0.662823 5_4:-29779988 Msa0847540:CDS
GTAAAAGAGGAGGAAAATGG+TGG 0.672369 5_4:-29781181 Msa0847540:CDS
AACTCAGAAATGCAATTTGG+GGG 0.672512 5_4:+29779751 None:intergenic
AAGTGGATTATGTGATGCGA+AGG 0.674316 5_4:-29778183 Msa0847540:CDS
TGGCAAGGAGGATATGAACT+CGG 0.679134 5_4:+29779070 None:intergenic
CTCTCACAGATACATTACAA+AGG 0.679764 5_4:+29775182 None:intergenic
TCAATGGCACTGGAGAAAAG+GGG 0.683003 5_4:-29779512 Msa0847540:CDS
AAGTGGAACTGGAAAATGTG+GGG 0.688014 5_4:-29778370 Msa0847540:CDS
TATACATGCTATGCTTGATG+TGG 0.693903 5_4:-29776230 Msa0847540:CDS
GCTGCTTGATAATGTGCACG+TGG 0.707595 5_4:-29778997 Msa0847540:CDS
TCTGTGGTAGTCAAATATCG+AGG 0.709923 5_4:+29780062 None:intergenic
AAAGTGGAACTGGAAAATGT+GGG 0.718012 5_4:-29778371 Msa0847540:CDS
ATATTCTTTATATGGCAAGG+AGG 0.725924 5_4:+29779058 None:intergenic
ATAATATACTGAATAACACA+GGG 0.733267 5_4:-29779627 Msa0847540:CDS
TGGAACGGTCAAAATCTGAG+TGG 0.746210 5_4:-29779858 Msa0847540:CDS
AGTAAATCACTATTTCACAG+AGG 0.750431 5_4:-29776882 Msa0847540:CDS
GCTGATCTGAGAAAGAAACG+TGG 0.761952 5_4:-29781439 Msa0847540:CDS
CTGCTTGATAATGTGCACGT+GGG 0.762881 5_4:-29778996 Msa0847540:CDS
CTACATCAGACATATCACAG+TGG 0.829336 5_4:+29778907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATAATAA+AGG - chr5_4:29775726-29775745 Msa0847540:intron 0.0%
!! AATAATAATAATAATAAAGG+AGG - chr5_4:29775729-29775748 Msa0847540:intron 10.0%
!!! TATATTTTTTAAATTGCTAT+TGG - chr5_4:29776558-29776577 Msa0847540:intron 10.0%
!!! AAATTTTTCTCAAATAAATA+AGG + chr5_4:29777722-29777741 None:intergenic 10.0%
!! TTATTATTATTATCAGATAC+AGG + chr5_4:29775717-29775736 None:intergenic 15.0%
!! ACTTAACACATAATAAAAAA+GGG + chr5_4:29776485-29776504 None:intergenic 15.0%
!! AACTTAACACATAATAAAAA+AGG + chr5_4:29776486-29776505 None:intergenic 15.0%
!! AATTATCAAAGAAAAAAACA+CGG + chr5_4:29778400-29778419 None:intergenic 15.0%
!!! TGTTTTTTTCTTTGATAATT+TGG - chr5_4:29778400-29778419 Msa0847540:intron 15.0%
!! ATTTGTAAAAAATTGTATGT+AGG + chr5_4:29779725-29779744 None:intergenic 15.0%
!! AAACCTATTAAAATTAAGTA+AGG + chr5_4:29780736-29780755 None:intergenic 15.0%
!!! AGAAGTAATTTTTTTTTGTA+GGG + chr5_4:29780765-29780784 None:intergenic 15.0%
!!! TAGAAGTAATTTTTTTTTGT+AGG + chr5_4:29780766-29780785 None:intergenic 15.0%
!! AAGATAAAATTAACAAAATC+TGG - chr5_4:29780956-29780975 Msa0847540:intron 15.0%
!! AATTAAACAAATTTGAATTG+AGG - chr5_4:29781082-29781101 Msa0847540:CDS 15.0%
!! AAAGAAATATTAAATGATGA+AGG + chr5_4:29781277-29781296 None:intergenic 15.0%
!!! TATTTTATTTTAGTTTCTCT+AGG - chr5_4:29781562-29781581 Msa0847540:five_prime_UTR 15.0%
!! TAATCAAATTCTGTTATTCA+TGG - chr5_4:29775927-29775946 Msa0847540:intron 20.0%
!! AGATCTAATTGTCTTAAATA+TGG + chr5_4:29776094-29776113 None:intergenic 20.0%
!! GACATTAATAAGAAAAAACA+AGG + chr5_4:29776176-29776195 None:intergenic 20.0%
!! ATAATATACTGAATAACACA+GGG - chr5_4:29777199-29777218 Msa0847540:intron 20.0%
!!! TTTTTCTCAAATAAATAAGG+AGG + chr5_4:29777719-29777738 None:intergenic 20.0%
!!! TTATTTTGTGTAATTTACGT+TGG - chr5_4:29778146-29778165 Msa0847540:CDS 20.0%
!! GGATAGACAATTTATTTATT+GGG + chr5_4:29778295-29778314 None:intergenic 20.0%
!! TGGATAGACAATTTATTTAT+TGG + chr5_4:29778296-29778315 None:intergenic 20.0%
!! TTCAAATATTCCTTCAATTT+AGG + chr5_4:29778740-29778759 None:intergenic 20.0%
!! ATGTTGAATTGTTAACAAAA+TGG + chr5_4:29779106-29779125 None:intergenic 20.0%
!!! ATTTGTTTTATCGTTAATGA+AGG - chr5_4:29779244-29779263 Msa0847540:intron 20.0%
!! AATAGTTAGTTATATGATGT+TGG + chr5_4:29779331-29779350 None:intergenic 20.0%
!!! TTCATAGAAATTTTAGAATC+CGG - chr5_4:29780080-29780099 Msa0847540:intron 20.0%
!! AAGCATATTATTCATTGAAA+TGG - chr5_4:29780221-29780240 Msa0847540:CDS 20.0%
!! GGTAAAATAAGTTTAATTCA+AGG + chr5_4:29780269-29780288 None:intergenic 20.0%
!! TTACATTACAATTACAAAAG+TGG + chr5_4:29780327-29780346 None:intergenic 20.0%
!!! TTCTTTGAAAAGTCATTAAT+TGG - chr5_4:29780435-29780454 Msa0847540:intron 20.0%
!!! TATAGGGTTAAATATGTTTT+TGG - chr5_4:29780678-29780697 Msa0847540:intron 20.0%
!!! TAGAAATTCCCAATTTTATA+GGG + chr5_4:29780705-29780724 None:intergenic 20.0%
!!! TTAGAAATTCCCAATTTTAT+AGG + chr5_4:29780706-29780725 None:intergenic 20.0%
!!! AGTCCTTACTTAATTTTAAT+AGG - chr5_4:29780730-29780749 Msa0847540:CDS 20.0%
!!! CAAGTTTAGAATACTATAAA+AGG - chr5_4:29780860-29780879 Msa0847540:intron 20.0%
!!! CTTTTTAATTGTCACTTTTA+GGG - chr5_4:29781178-29781197 Msa0847540:CDS 20.0%
!! TAAATGATGAAGGTTATTAT+AGG + chr5_4:29781267-29781286 None:intergenic 20.0%
!!! TTAAGGGTTAAATATGTTTT+CGG + chr5_4:29781493-29781512 None:intergenic 20.0%
! AAATACAAACAAAAGCTTCA+AGG - chr5_4:29775268-29775287 Msa0847540:intron 25.0%
! ATTGTCTTAAATATGGAAGA+AGG + chr5_4:29776087-29776106 None:intergenic 25.0%
!! ACAATTAGATCTAGAACAAA+TGG - chr5_4:29776102-29776121 Msa0847540:intron 25.0%
! TAAGAAAAAACAAGGATTGA+AGG + chr5_4:29776168-29776187 None:intergenic 25.0%
! TTGTTATGTGTTAAGTTTGA+GGG - chr5_4:29776287-29776306 Msa0847540:intron 25.0%
! AACCTCTTGTGTTTAAAAAT+AGG - chr5_4:29776379-29776398 Msa0847540:intron 25.0%
! ACCTCTTGTGTTTAAAAATA+GGG - chr5_4:29776380-29776399 Msa0847540:intron 25.0%
! TTGTGTTTAAAAATAGGGTA+AGG - chr5_4:29776385-29776404 Msa0847540:intron 25.0%
!! ACTTATACTTAAGCATGTTT+TGG - chr5_4:29776668-29776687 Msa0847540:intron 25.0%
! TTGATTAACTCAAACTCAAT+TGG + chr5_4:29776871-29776890 None:intergenic 25.0%
! ATATTATCTTCCTTCTTAAC+AGG + chr5_4:29777186-29777205 None:intergenic 25.0%
! GATAATATACTGAATAACAC+AGG - chr5_4:29777198-29777217 Msa0847540:intron 25.0%
!! ACAGTATAAAAAGTTTTCAC+TGG + chr5_4:29777247-29777266 None:intergenic 25.0%
!! AAACTTTTTATACTGTCCTA+AGG - chr5_4:29777251-29777270 Msa0847540:intron 25.0%
!!! AGGATTTAAGACATTTTCAA+TGG - chr5_4:29777298-29777317 Msa0847540:intron 25.0%
! AGCTATTGAAATTGAATGAT+CGG - chr5_4:29777693-29777712 Msa0847540:CDS 25.0%
! TGTATATTCTTTATATGGCA+AGG + chr5_4:29777774-29777793 None:intergenic 25.0%
! GGATCTGTATATTCTTTATA+TGG + chr5_4:29777779-29777798 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+TGG + chr5_4:29777857-29777876 None:intergenic 25.0%
! CCAAAAACATATATTGCTTA+TGG - chr5_4:29777854-29777873 Msa0847540:CDS 25.0%
!! CATTGATTACAACTTTCTAA+TGG + chr5_4:29778266-29778285 None:intergenic 25.0%
!!! CTTTGATAATTTGGCTTTTT+AGG - chr5_4:29778409-29778428 Msa0847540:intron 25.0%
! CATCAAGAAAATAGTTTAGA+TGG - chr5_4:29778680-29778699 Msa0847540:intron 25.0%
!!! GAATATTTGAAGAAGCATTT+TGG - chr5_4:29778749-29778768 Msa0847540:intron 25.0%
! TTACTAACAATCATAAGAAG+AGG - chr5_4:29779000-29779019 Msa0847540:CDS 25.0%
!! TATAATTTTTGTACACCGTT+TGG - chr5_4:29779051-29779070 Msa0847540:CDS 25.0%
! TTCTCTTTATTAACCATAGA+AGG + chr5_4:29779280-29779299 None:intergenic 25.0%
! GAAGTATAAAACTATTACGA+CGG + chr5_4:29779368-29779387 None:intergenic 25.0%
!! TGATATCTTAGTACTTTTGT+TGG - chr5_4:29779594-29779613 Msa0847540:CDS 25.0%
!!! CAATTTTTTACAAATTACCC+TGG - chr5_4:29779730-29779749 Msa0847540:CDS 25.0%
! AAAGTTTGTATGAATGTCAA+TGG - chr5_4:29779815-29779834 Msa0847540:CDS 25.0%
!!! TCATAGAAATTTTAGAATCC+GGG - chr5_4:29780081-29780100 Msa0847540:intron 25.0%
! TCAATTACTGAAAATACGAT+CGG - chr5_4:29780349-29780368 Msa0847540:intron 25.0%
!! AATGGTTCTGTATATTTAGT+AGG - chr5_4:29780388-29780407 Msa0847540:intron 25.0%
! TCATGTCAATAGATTCTTAT+TGG - chr5_4:29780511-29780530 Msa0847540:intron 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG - chr5_4:29780694-29780713 Msa0847540:CDS 25.0%
!! AAACAAACTTTGTTGTAACA+GGG + chr5_4:29780797-29780816 None:intergenic 25.0%
!! TAAACAAACTTTGTTGTAAC+AGG + chr5_4:29780798-29780817 None:intergenic 25.0%
! TAAACAAATTTGAATTGAGG+AGG - chr5_4:29781085-29781104 Msa0847540:CDS 25.0%
! AAACAAATTTGAATTGAGGA+GGG - chr5_4:29781086-29781105 Msa0847540:CDS 25.0%
!!! TGAGTGCAGAAATTTTTTAT+AGG - chr5_4:29781129-29781148 Msa0847540:CDS 25.0%
!!! GAGTGCAGAAATTTTTTATA+GGG - chr5_4:29781130-29781149 Msa0847540:CDS 25.0%
! AAGTGACAATTAAAAAGGAA+CGG + chr5_4:29781411-29781430 None:intergenic 25.0%
! CCTAAAAGTGACAATTAAAA+AGG + chr5_4:29781180-29781199 None:intergenic 25.0%
!!! CCTTTTTAATTGTCACTTTT+AGG - chr5_4:29781177-29781196 Msa0847540:CDS 25.0%
! GTAAAATGTAATTGTTGTCT+TGG + chr5_4:29781216-29781235 None:intergenic 25.0%
! TAAATAACCAAGGGTAATAA+AGG - chr5_4:29781319-29781338 Msa0847540:CDS 25.0%
! TGCAAAAGTGACAATTAAAA+AGG - chr5_4:29781406-29781425 Msa0847540:CDS 25.0%
! AAGTGACAATTAAAAAGGAA+CGG - chr5_4:29781411-29781430 Msa0847540:CDS 25.0%
!!! GGGAGTATTAAAATTAAGTA+AGG - chr5_4:29781435-29781454 Msa0847540:CDS 25.0%
! AAGTAAGGACTAAACTTAAA+AGG - chr5_4:29781450-29781469 Msa0847540:CDS 25.0%
!! TTAAAAGGTCCCAATTTTAT+AGG - chr5_4:29781465-29781484 Msa0847540:CDS 25.0%
!! TAAAAGGTCCCAATTTTATA+GGG - chr5_4:29781466-29781485 Msa0847540:CDS 25.0%
! AGTGAACATGGTATATTTAA+GGG + chr5_4:29781509-29781528 None:intergenic 25.0%
! AAGTGAACATGGTATATTTA+AGG + chr5_4:29781510-29781529 None:intergenic 25.0%
CAGAAAGAAAAAAGTGAAGA+TGG - chr5_4:29775410-29775429 Msa0847540:intron 30.0%
TGCTGTAAATAAGAGTAAAG+TGG - chr5_4:29775476-29775495 Msa0847540:intron 30.0%
TGTAAATAAGAGTAAAGTGG+TGG - chr5_4:29775479-29775498 Msa0847540:intron 30.0%
AAGAAGAAGAAAGAAAATCG+TGG - chr5_4:29775588-29775607 Msa0847540:intron 30.0%
! AAGGTATTCTAGCATATACT+TGG + chr5_4:29776068-29776087 None:intergenic 30.0%
! GAAAAGAACACCTTGTATTT+TGG + chr5_4:29776146-29776165 None:intergenic 30.0%
CTACTACATAATTGATATCC+TGG - chr5_4:29776228-29776247 Msa0847540:CDS 30.0%
CAATAAAAATAGTGCATACC+AGG + chr5_4:29776249-29776268 None:intergenic 30.0%
! CTTGTTATGTGTTAAGTTTG+AGG - chr5_4:29776286-29776305 Msa0847540:intron 30.0%
TGTTATGTGTTAAGTTTGAG+GGG - chr5_4:29776288-29776307 Msa0847540:intron 30.0%
!!! ACCCTATTTTTAAACACAAG+AGG + chr5_4:29776384-29776403 None:intergenic 30.0%
AACTAAGAATGATCTCCTAT+TGG + chr5_4:29776531-29776550 None:intergenic 30.0%
CTATTGGAATGATCATTACA+GGG - chr5_4:29776574-29776593 Msa0847540:intron 30.0%
TTATGTAGATCAATAGCCTT+AGG + chr5_4:29777270-29777289 None:intergenic 30.0%
ATTCGAAAGTGAATTGTCAT+TGG + chr5_4:29777436-29777455 None:intergenic 30.0%
AGGCAATTGATTGCTTAAAT+TGG - chr5_4:29777460-29777479 Msa0847540:intron 30.0%
TTAAGAAAATCGAACAAACC+TGG + chr5_4:29777488-29777507 None:intergenic 30.0%
AAAGTGCATGATTTCTTTAC+TGG - chr5_4:29777632-29777651 Msa0847540:CDS 30.0%
AAGTGCATGATTTCTTTACT+GGG - chr5_4:29777633-29777652 Msa0847540:CDS 30.0%
TCATTCAATTTCAATAGCTG+AGG + chr5_4:29777692-29777711 None:intergenic 30.0%
ATATTCTTTATATGGCAAGG+AGG + chr5_4:29777771-29777790 None:intergenic 30.0%
GAATATACAGATCCTTTCAA+AGG - chr5_4:29777785-29777804 Msa0847540:intron 30.0%
TATTGCTTATGGATTTCATC+AGG - chr5_4:29777865-29777884 Msa0847540:intron 30.0%
TATTTGCGTAGCATATTGAA+AGG - chr5_4:29778020-29778039 Msa0847540:intron 30.0%
!! TGTAATTTACGTTGGTGTTT+TGG - chr5_4:29778154-29778173 Msa0847540:CDS 30.0%
GAGAAAATGAAGGAAAATGT+TGG + chr5_4:29778851-29778870 None:intergenic 30.0%
TGAATAACCTACATTACCAA+TGG + chr5_4:29778954-29778973 None:intergenic 30.0%
TAAGATAAAACGTCTGATCA+TGG + chr5_4:29778983-29779002 None:intergenic 30.0%
AACAAAATGGTACAACTGTA+TGG + chr5_4:29779093-29779112 None:intergenic 30.0%
ACAATTCAACATTGATCTGT+AGG - chr5_4:29779114-29779133 Msa0847540:CDS 30.0%
GGAATGATCAAATGGAAATA+TGG + chr5_4:29779390-29779409 None:intergenic 30.0%
ATACTTAAGGCCATATCATT+TGG - chr5_4:29779509-29779528 Msa0847540:CDS 30.0%
ATCTAGATGTCCAAATGATA+TGG + chr5_4:29779522-29779541 None:intergenic 30.0%
AGTATTCAAAAAGAACTGAC+AGG + chr5_4:29779664-29779683 None:intergenic 30.0%
AGTGATTTACTGGAAGTTTA+CGG + chr5_4:29779935-29779954 None:intergenic 30.0%
TCTGTGAAATAGTGATTTAC+TGG + chr5_4:29779945-29779964 None:intergenic 30.0%
AGTAAATCACTATTTCACAG+AGG - chr5_4:29779944-29779963 Msa0847540:CDS 30.0%
TCAAATCCATAAAAGTAGTC+TGG + chr5_4:29779986-29780005 None:intergenic 30.0%
!! TTTCAACCAATAGAAGTGTT+TGG + chr5_4:29780195-29780214 None:intergenic 30.0%
! AACACTTCTATTGGTTGAAA+TGG - chr5_4:29780195-29780214 Msa0847540:CDS 30.0%
GGAATGGGAAAAATGAAAAA+TGG - chr5_4:29780370-29780389 Msa0847540:intron 30.0%
AATCTATTGACATGACATGA+TGG + chr5_4:29780506-29780525 None:intergenic 30.0%
!!! TTTTCTGATTGCTGCTTTTT+TGG - chr5_4:29780549-29780568 Msa0847540:intron 30.0%
! TAATCATTTTCTTCACCTGT+TGG + chr5_4:29780578-29780597 None:intergenic 30.0%
ACCCTATATTCAATAACCTT+GGG + chr5_4:29780666-29780685 None:intergenic 30.0%
AACCCTATATTCAATAACCT+TGG + chr5_4:29780667-29780686 None:intergenic 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG - chr5_4:29780693-29780712 Msa0847540:intron 30.0%
TCTCTGCAATAAATAACCAA+GGG - chr5_4:29781310-29781329 Msa0847540:CDS 30.0%
! TTTTCGGTCCCTATAAAATT+GGG + chr5_4:29781477-29781496 None:intergenic 30.0%
AATGAGTAATGCAGAGAAGA+AGG - chr5_4:29775308-29775327 Msa0847540:intron 35.0%
GTGAAGAAGAAAGAAAATCG+AGG - chr5_4:29775510-29775529 Msa0847540:intron 35.0%
AGAAGAAAGAAAATCGAGGT+AGG - chr5_4:29775514-29775533 Msa0847540:intron 35.0%
AAGAAAATCGAGGTAGGAAA+AGG - chr5_4:29775520-29775539 Msa0847540:intron 35.0%
CTTCTTCTTCTTCTTCTCTT+TGG + chr5_4:29775577-29775596 None:intergenic 35.0%
AGAAGAAAGAAAATCGTGGT+AGG - chr5_4:29775592-29775611 Msa0847540:intron 35.0%
!! TAGTTCTGAAGCTGTAAAAG+AGG - chr5_4:29775632-29775651 Msa0847540:intron 35.0%
!!! AAATGGTGGTTTTGTGAAGA+AGG - chr5_4:29775659-29775678 Msa0847540:intron 35.0%
! TTTTGTGAAGAAGGAGAAGA+AGG - chr5_4:29775668-29775687 Msa0847540:intron 35.0%
! GGCATTTTTCTTTTCCCATT+AGG + chr5_4:29775696-29775715 None:intergenic 35.0%
GAAACTTGATTGCATGCATA+AGG - chr5_4:29775779-29775798 Msa0847540:intron 35.0%
! TTTTGTTGATGCATGTGCTT+TGG - chr5_4:29775856-29775875 Msa0847540:intron 35.0%
! TTTGGCTTCTATCTCCATTT+CGG + chr5_4:29776128-29776147 None:intergenic 35.0%
GAGATAGAAGCCAAAATACA+AGG - chr5_4:29776133-29776152 Msa0847540:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr5_4:29776329-29776348 Msa0847540:intron 35.0%
CATAATAAAAAAGGGCAACC+CGG + chr5_4:29776477-29776496 None:intergenic 35.0%
GCTATTGGAATGATCATTAC+AGG - chr5_4:29776573-29776592 Msa0847540:intron 35.0%
! AGTTTGAGTTAATCAACCGA+GGG - chr5_4:29776875-29776894 Msa0847540:CDS 35.0%
AGCATGAGATTCATTATCTC+CGG + chr5_4:29776929-29776948 None:intergenic 35.0%
TGTCCAAAAGCCAATAATGA+AGG - chr5_4:29777018-29777037 Msa0847540:intron 35.0%
!!! TCACCTTCATTATTGGCTTT+TGG + chr5_4:29777024-29777043 None:intergenic 35.0%
ACCATGATCACCTTCATTAT+TGG + chr5_4:29777031-29777050 None:intergenic 35.0%
AACTCAGAAATGCAATTTGG+GGG + chr5_4:29777078-29777097 None:intergenic 35.0%
CAACTCAGAAATGCAATTTG+GGG + chr5_4:29777079-29777098 None:intergenic 35.0%
CCAACTCAGAAATGCAATTT+GGG + chr5_4:29777080-29777099 None:intergenic 35.0%
ACCAACTCAGAAATGCAATT+TGG + chr5_4:29777081-29777100 None:intergenic 35.0%
CTTGATCTCTTCGAGATTAA+CGG + chr5_4:29777130-29777149 None:intergenic 35.0%
! TTGTTTGAAGCCTGTTAAGA+AGG - chr5_4:29777173-29777192 Msa0847540:intron 35.0%
TATACTGAATAACACAGGGA+AGG - chr5_4:29777203-29777222 Msa0847540:intron 35.0%
TGATCTACATAATCACGAGA+AGG - chr5_4:29777278-29777297 Msa0847540:intron 35.0%
! TAAGACATTTTCAATGGCAC+TGG - chr5_4:29777304-29777323 Msa0847540:intron 35.0%
AGAACGTTGTTGACAATTAC+AGG + chr5_4:29777342-29777361 None:intergenic 35.0%
GTTCTTGAATTAAGTACGTC+TGG - chr5_4:29777357-29777376 Msa0847540:intron 35.0%
CAATTCACTTTCGAATGTGA+AGG - chr5_4:29777440-29777459 Msa0847540:intron 35.0%
CAGAAATTATCAGCAACAGA+TGG + chr5_4:29777572-29777591 None:intergenic 35.0%
!! TTGACTTGTTGATTCAATGC+AGG - chr5_4:29777601-29777620 Msa0847540:intron 35.0%
!! TGACTTGTTGATTCAATGCA+GGG - chr5_4:29777602-29777621 Msa0847540:intron 35.0%
TTCTTTACTGGGTACACAAA+TGG - chr5_4:29777644-29777663 Msa0847540:CDS 35.0%
AGGTTAAGATCACCTTTGAA+AGG + chr5_4:29777800-29777819 None:intergenic 35.0%
TGTTTCAATTCTGTCTTTCC+TGG - chr5_4:29777944-29777963 Msa0847540:intron 35.0%
! CATTCTAGAAAATACAGTCC+AGG + chr5_4:29777965-29777984 None:intergenic 35.0%
! TTGAAAGGTGCATAGTTTGA+AGG - chr5_4:29778035-29778054 Msa0847540:intron 35.0%
GCACAGACAAAAAACTAATC+TGG + chr5_4:29778316-29778335 None:intergenic 35.0%
TAAGTGCATACTCTATCAAG+TGG - chr5_4:29778360-29778379 Msa0847540:CDS 35.0%
TAAAGTGGAACTGGAAAATG+TGG - chr5_4:29778454-29778473 Msa0847540:intron 35.0%
AAAGTGGAACTGGAAAATGT+GGG - chr5_4:29778455-29778474 Msa0847540:intron 35.0%
ATTATCAAGCCTGTCAACAT+TGG + chr5_4:29778564-29778583 None:intergenic 35.0%
AGAGGATGTACCTAAATTGA+AGG - chr5_4:29778727-29778746 Msa0847540:intron 35.0%
!! CTATTGTTCTCCTTTAAAGC+AGG - chr5_4:29778787-29778806 Msa0847540:intron 35.0%
TCTGACTTTACCTGCTTTAA+AGG + chr5_4:29778800-29778819 None:intergenic 35.0%
GCTGAGAAAAGAGAAAATGA+AGG + chr5_4:29778861-29778880 None:intergenic 35.0%
AGCTAGTGATAACTAAAACC+TGG - chr5_4:29778878-29778897 Msa0847540:intron 35.0%
AGTGATAACTAAAACCTGGT+AGG - chr5_4:29778882-29778901 Msa0847540:intron 35.0%
ACATAATTAGTGAACCTACC+AGG + chr5_4:29778899-29778918 None:intergenic 35.0%
TAAAACGTCTGATCATGGAT+GGG + chr5_4:29778978-29778997 None:intergenic 35.0%
ATAAAACGTCTGATCATGGA+TGG + chr5_4:29778979-29778998 None:intergenic 35.0%
CAATCATAAGAAGAGGCTTA+AGG - chr5_4:29779007-29779026 Msa0847540:CDS 35.0%
TTACCTTCAGATTTCTGACT+TGG + chr5_4:29779206-29779225 None:intergenic 35.0%
GAAGGTAAAACTTATGTGCA+TGG - chr5_4:29779218-29779237 Msa0847540:intron 35.0%
! AGGTGTAAGTTTTCCTTCTA+TGG - chr5_4:29779264-29779283 Msa0847540:intron 35.0%
!! TATGGCCTTAAGTATTGATG+TGG + chr5_4:29779504-29779523 None:intergenic 35.0%
! CTTGAGAATTGGTAACTCAA+TGG - chr5_4:29779556-29779575 Msa0847540:CDS 35.0%
! ATTGGTAACTCAATGGAGAT+AGG - chr5_4:29779563-29779582 Msa0847540:CDS 35.0%
TAACTCAATGGAGATAGGAT+AGG - chr5_4:29779568-29779587 Msa0847540:CDS 35.0%
ACATAAAAGTGATGAGCTAG+TGG + chr5_4:29779763-29779782 None:intergenic 35.0%
!! CTTTTCAAGCATTAGCTAGA+AGG + chr5_4:29779799-29779818 None:intergenic 35.0%
CTATTTCACAGAGGACAAAT+TGG - chr5_4:29779953-29779972 Msa0847540:CDS 35.0%
CTTGACCTACCAAAACAATT+GGG - chr5_4:29780104-29780123 Msa0847540:intron 35.0%
CAGTACACTACACCTATTAT+TGG - chr5_4:29780143-29780162 Msa0847540:intron 35.0%
AACATGACAGTGCCAATAAT+AGG + chr5_4:29780158-29780177 None:intergenic 35.0%
!! CCAATAGAAGTGTTTGGATT+TGG + chr5_4:29780189-29780208 None:intergenic 35.0%
CCAAATCCAAACACTTCTAT+TGG - chr5_4:29780186-29780205 Msa0847540:intron 35.0%
TACTGAAAATACGATCGGAA+TGG - chr5_4:29780354-29780373 Msa0847540:intron 35.0%
ACTGAAAATACGATCGGAAT+GGG - chr5_4:29780355-29780374 Msa0847540:intron 35.0%
TATACATGCTATGCTTGATG+TGG - chr5_4:29780596-29780615 Msa0847540:intron 35.0%
TAGAAAAGTTGGAGAATGCA+AGG - chr5_4:29780619-29780638 Msa0847540:intron 35.0%
GGTTAGTGATTGCATACTTA+AGG - chr5_4:29780640-29780659 Msa0847540:intron 35.0%
GCCCAAGGTTATTGAATATA+GGG - chr5_4:29780662-29780681 Msa0847540:intron 35.0%
!!! TTTGCGACAATTTTTTGCAG+AGG - chr5_4:29780994-29781013 Msa0847540:intron 35.0%
GACAATTAAAAAGGAACGGA+GGG + chr5_4:29781415-29781434 None:intergenic 35.0%
TGACAATTAAAAAGGAACGG+AGG + chr5_4:29781414-29781433 None:intergenic 35.0%
CTCTCTGCAATAAATAACCA+AGG - chr5_4:29781309-29781328 Msa0847540:CDS 35.0%
! TGTTTTGCCTTTATTACCCT+TGG + chr5_4:29781329-29781348 None:intergenic 35.0%
TGACAATTAAAAAGGAACGG+AGG - chr5_4:29781414-29781433 Msa0847540:CDS 35.0%
GACAATTAAAAAGGAACGGA+GGG - chr5_4:29781415-29781434 Msa0847540:CDS 35.0%
! GTTTTCGGTCCCTATAAAAT+TGG + chr5_4:29781478-29781497 None:intergenic 35.0%
ATATACCATGTTCACTTTGC+TGG - chr5_4:29781513-29781532 Msa0847540:CDS 35.0%
AATTGAACGGTAGGCAAAAT+CGG + chr5_4:29781600-29781619 None:intergenic 35.0%
! ATTATTTGCTAGCACAAGCG+AGG + chr5_4:29775233-29775252 None:intergenic 40.0%
GCTTCAAGGAAGAAGAAACT+TGG - chr5_4:29775282-29775301 Msa0847540:intron 40.0%
TTTCTCAGATCAGCAGAAGA+AGG + chr5_4:29775381-29775400 None:intergenic 40.0%
!! TTCTGAAGCTGTAAAAGAGG+AGG - chr5_4:29775635-29775654 Msa0847540:intron 40.0%
GCTGTAAAAGAGGAGGAAAA+TGG - chr5_4:29775642-29775661 Msa0847540:intron 40.0%
GTAAAAGAGGAGGAAAATGG+TGG - chr5_4:29775645-29775664 Msa0847540:intron 40.0%
AAGGAGAAGAAGGAACCTAA+TGG - chr5_4:29775678-29775697 Msa0847540:intron 40.0%
AGGAGAAGAAGGAACCTAAT+GGG - chr5_4:29775679-29775698 Msa0847540:intron 40.0%
! TCTAGAACAAATGGCCGAAA+TGG - chr5_4:29776111-29776130 Msa0847540:intron 40.0%
! AAACACAAGAGGTTGTTTCC+AGG + chr5_4:29776373-29776392 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr5_4:29776411-29776430 Msa0847540:intron 40.0%
CATCTCATGCATGATCCAAT+AGG - chr5_4:29776513-29776532 Msa0847540:intron 40.0%
CTAAAGATGAGTGTGCTTAC+TGG - chr5_4:29776640-29776659 Msa0847540:intron 40.0%
TCTGTGGTAGTCAAATATCG+AGG + chr5_4:29776767-29776786 None:intergenic 40.0%
! AGCATTTTGCACAACTTCTG+TGG + chr5_4:29776783-29776802 None:intergenic 40.0%
! GAGTTTGAGTTAATCAACCG+AGG - chr5_4:29776874-29776893 Msa0847540:CDS 40.0%
CTGCATGGTGAGATAATAAC+CGG - chr5_4:29776907-29776926 Msa0847540:CDS 40.0%
TCAAAATCTGAGTGGCATGT+AGG - chr5_4:29776976-29776995 Msa0847540:intron 40.0%
GCCAATAATGAAGGTGATCA+TGG - chr5_4:29777027-29777046 Msa0847540:intron 40.0%
CCCAAATTGCATTTCTGAGT+TGG - chr5_4:29777077-29777096 Msa0847540:intron 40.0%
CGTTAATCTCGAAGAGATCA+AGG - chr5_4:29777128-29777147 Msa0847540:intron 40.0%
! TTTCAATGGCACTGGAGAAA+AGG - chr5_4:29777312-29777331 Msa0847540:intron 40.0%
! TTCAATGGCACTGGAGAAAA+GGG - chr5_4:29777313-29777332 Msa0847540:intron 40.0%
! TAAGTACGTCTGGTTTAAGC+TGG - chr5_4:29777367-29777386 Msa0847540:intron 40.0%
! AAGTACGTCTGGTTTAAGCT+GGG - chr5_4:29777368-29777387 Msa0847540:intron 40.0%
! TGATTGCTTAAATTGGTGCC+AGG - chr5_4:29777467-29777486 Msa0847540:intron 40.0%
AGACTAAGCAGTCATTTGAG+TGG + chr5_4:29777518-29777537 None:intergenic 40.0%
AGGATATGAACTCGGTACAA+TGG + chr5_4:29777751-29777770 None:intergenic 40.0%
TATGGATTTCATCAGGAGCT+TGG - chr5_4:29777872-29777891 Msa0847540:intron 40.0%
ATGGATTTCATCAGGAGCTT+GGG - chr5_4:29777873-29777892 Msa0847540:intron 40.0%
CTACATCAGACATATCACAG+TGG + chr5_4:29777922-29777941 None:intergenic 40.0%
! GTTGACTCATGTTGCTAAAG+TGG - chr5_4:29778439-29778458 Msa0847540:intron 40.0%
TCATGTTGCTAAAGTGGAAC+TGG - chr5_4:29778445-29778464 Msa0847540:intron 40.0%
AAGTGGAACTGGAAAATGTG+GGG - chr5_4:29778456-29778475 Msa0847540:intron 40.0%
CTACATGGTGATAATCAGGA+TGG - chr5_4:29778533-29778552 Msa0847540:intron 40.0%
GAAGCAATTACGGAAGAAGA+CGG + chr5_4:29778587-29778606 None:intergenic 40.0%
! GTGCTCATCTGAAGCAATTA+CGG + chr5_4:29778597-29778616 None:intergenic 40.0%
CGAGTCATGGAAAATGAAAG+TGG - chr5_4:29778626-29778645 Msa0847540:intron 40.0%
!! AAGTGGATTATGTGATGCGA+AGG - chr5_4:29778643-29778662 Msa0847540:intron 40.0%
ATAGTTTAGATGGTGCTCTC+TGG - chr5_4:29778690-29778709 Msa0847540:intron 40.0%
TAGTTTAGATGGTGCTCTCT+GGG - chr5_4:29778691-29778710 Msa0847540:intron 40.0%
!!! GTGCTCTCTGGGATATTTTT+CGG - chr5_4:29778702-29778721 Msa0847540:intron 40.0%
!!! AGAAGCATTTTGGAGAGTTC+AGG - chr5_4:29778759-29778778 Msa0847540:intron 40.0%
GAGTTGAATGACGTATCCAT+TGG - chr5_4:29778935-29778954 Msa0847540:CDS 40.0%
!! GACGTATCCATTGGTAATGT+AGG - chr5_4:29778944-29778963 Msa0847540:CDS 40.0%
TCATAAGAAGAGGCTTAAGG+AGG - chr5_4:29779010-29779029 Msa0847540:CDS 40.0%
!! TTTGTACACCGTTTGGTTTG+TGG - chr5_4:29779058-29779077 Msa0847540:CDS 40.0%
TCAACACTCCACAAACCAAA+CGG + chr5_4:29779069-29779088 None:intergenic 40.0%
AGCTTCTGAACAAAACTCCA+AGG + chr5_4:29779147-29779166 None:intergenic 40.0%
!!! TGGAGTTTTGTTCAGAAGCT+AGG - chr5_4:29779147-29779166 Msa0847540:CDS 40.0%
!! CTTCAGATTTCTGACTTGGT+GGG + chr5_4:29779202-29779221 None:intergenic 40.0%
GGTAAAACTTATGTGCATGG+TGG - chr5_4:29779221-29779240 Msa0847540:intron 40.0%
CTCACATGGGAATGATCAAA+TGG + chr5_4:29779398-29779417 None:intergenic 40.0%
TTGATCATTCCCATGTGAGA+CGG - chr5_4:29779399-29779418 Msa0847540:CDS 40.0%
CTGTTCTGCGTATTTGAGTA+AGG + chr5_4:29779474-29779493 None:intergenic 40.0%
TCATTTGGACATCTAGATCG+CGG - chr5_4:29779524-29779543 Msa0847540:CDS 40.0%
!! GGCTTGATTAGCTTGAGAAT+TGG - chr5_4:29779545-29779564 Msa0847540:CDS 40.0%
ATGATCCATTCGACTGAGTT+AGG + chr5_4:29779621-29779640 None:intergenic 40.0%
GACAAAATCAAGTGCAACCT+TGG + chr5_4:29779868-29779887 None:intergenic 40.0%
TTTGTCTCTCCCGAAAATGT+CGG - chr5_4:29779882-29779901 Msa0847540:CDS 40.0%
TACGGATTTCCTCTGTCAAA+CGG + chr5_4:29779917-29779936 None:intergenic 40.0%
TTTCACAGAGGACAAATTGG+AGG - chr5_4:29779956-29779975 Msa0847540:CDS 40.0%
!! GGTATGCCAGACTACTTTTA+TGG - chr5_4:29779977-29779996 Msa0847540:CDS 40.0%
GCTTGACCTACCAAAACAAT+TGG - chr5_4:29780103-29780122 Msa0847540:intron 40.0%
!!! CTGCTTTTTTGGTAACCAAC+AGG - chr5_4:29780560-29780579 Msa0847540:intron 40.0%
GCTTGATGTGGTAGAAAAGT+TGG - chr5_4:29780608-29780627 Msa0847540:intron 40.0%
GGCCCAAGGTTATTGAATAT+AGG - chr5_4:29780661-29780680 Msa0847540:intron 40.0%
TTTGACCAGCAAAGTGAACA+TGG + chr5_4:29781521-29781540 None:intergenic 40.0%
TTGCCTACCGTTCAATTTAC+AGG - chr5_4:29781603-29781622 Msa0847540:five_prime_UTR 40.0%
AGACCTGTAAATTGAACGGT+AGG + chr5_4:29781609-29781628 None:intergenic 40.0%
CCTCAGACCTGTAAATTGAA+CGG + chr5_4:29781613-29781632 None:intergenic 40.0%
GCACAAGCGAGGTAAATGTT+GGG + chr5_4:29775222-29775241 None:intergenic 45.0%
AGCACAAGCGAGGTAAATGT+TGG + chr5_4:29775223-29775242 None:intergenic 45.0%
GAGTAATGCAGAGAAGAAGG+AGG - chr5_4:29775311-29775330 Msa0847540:intron 45.0%
CAGAGAAGAAGGAGGCTTTA+AGG - chr5_4:29775319-29775338 Msa0847540:intron 45.0%
GCTGATCTGAGAAAGAAACG+TGG - chr5_4:29775387-29775406 Msa0847540:intron 45.0%
!! GATGCATGTGCTTTGGTTTG+TGG - chr5_4:29775863-29775882 Msa0847540:intron 45.0%
CAACTTTACCAGTTGCGTCA+AGG + chr5_4:29776317-29776336 None:intergenic 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr5_4:29776333-29776352 Msa0847540:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr5_4:29776407-29776426 Msa0847540:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr5_4:29776410-29776429 Msa0847540:intron 45.0%
GGTAGTCAAATATCGAGGTC+TGG + chr5_4:29776762-29776781 None:intergenic 45.0%
CATAGCAACAGCGAAGACAA+AGG + chr5_4:29776813-29776832 None:intergenic 45.0%
CATGCAGATAATCTTGCCCT+CGG + chr5_4:29776894-29776913 None:intergenic 45.0%
TTTGACCGTTCCAGAATCTC+AGG + chr5_4:29776961-29776980 None:intergenic 45.0%
TGGAACGGTCAAAATCTGAG+TGG - chr5_4:29776968-29776987 Msa0847540:CDS 45.0%
GTAACATTCGTCTCAGCTCA+AGG + chr5_4:29777056-29777075 None:intergenic 45.0%
! TCAATGGCACTGGAGAAAAG+GGG - chr5_4:29777314-29777333 Msa0847540:intron 45.0%
AATGCACGCCAAATGGCAAT+CGG + chr5_4:29777396-29777415 None:intergenic 45.0%
CTGATGAAATGCACGCCAAA+TGG + chr5_4:29777403-29777422 None:intergenic 45.0%
GTCGCAAGGATAAGCTTGAT+TGG - chr5_4:29777666-29777685 Msa0847540:CDS 45.0%
TGGCAAGGAGGATATGAACT+CGG + chr5_4:29777759-29777778 None:intergenic 45.0%
!! CTGCTTGATAATGTGCACGT+GGG - chr5_4:29777830-29777849 Msa0847540:CDS 45.0%
GGAGCTACATGGTGATAATC+AGG - chr5_4:29778529-29778548 Msa0847540:intron 45.0%
ATGGAGAGACCAATGTTGAC+AGG - chr5_4:29778552-29778571 Msa0847540:intron 45.0%
GCACAATAGTGTTCGAGTCA+TGG - chr5_4:29778613-29778632 Msa0847540:intron 45.0%
TGGATTATGTGATGCGAAGG+TGG - chr5_4:29778646-29778665 Msa0847540:intron 45.0%
!! CTGGGATATTTTTCGGAGAG+AGG - chr5_4:29778709-29778728 Msa0847540:intron 45.0%
AAGAGGCTTAAGGAGGAGTA+TGG - chr5_4:29779017-29779036 Msa0847540:CDS 45.0%
GATCTGTAGGAATTGAGCCT+TGG - chr5_4:29779127-29779146 Msa0847540:CDS 45.0%
!!! GATGCTGTTTTCATTCCAGC+TGG - chr5_4:29779171-29779190 Msa0847540:CDS 45.0%
!! CCTTCAGATTTCTGACTTGG+TGG + chr5_4:29779203-29779222 None:intergenic 45.0%
CCACCAAGTCAGAAATCTGA+AGG - chr5_4:29779200-29779219 Msa0847540:CDS 45.0%
! TTTTCCCAACCGTCTCACAT+GGG + chr5_4:29779411-29779430 None:intergenic 45.0%
ATGTGAGACGGTTGGGAAAA+GGG - chr5_4:29779411-29779430 Msa0847540:CDS 45.0%
AAAAGGGATTCTCGTGAAGG+CGG - chr5_4:29779427-29779446 Msa0847540:CDS 45.0%
GCCTGCCACATCAATACTTA+AGG - chr5_4:29779496-29779515 Msa0847540:CDS 45.0%
!! GCCTTAAGTATTGATGTGGC+AGG + chr5_4:29779500-29779519 None:intergenic 45.0%
TTGGTCCTAACTCAGTCGAA+TGG - chr5_4:29779613-29779632 Msa0847540:CDS 45.0%
GAGCTAGTGGTAAATAGCCA+GGG + chr5_4:29779750-29779769 None:intergenic 45.0%
TGAGCTAGTGGTAAATAGCC+AGG + chr5_4:29779751-29779770 None:intergenic 45.0%
! TGTTTTGCAGTCATGCACCA+AGG - chr5_4:29779848-29779867 Msa0847540:CDS 45.0%
! AAGCACTCACCGACATTTTC+GGG + chr5_4:29779894-29779913 None:intergenic 45.0%
!! GAAGCACTCACCGACATTTT+CGG + chr5_4:29779895-29779914 None:intergenic 45.0%
!!! TTGTTTTGGTAGGTCAAGCC+CGG + chr5_4:29780102-29780121 None:intergenic 45.0%
!!! TCAGGCCCAATTGTTTTGGT+AGG + chr5_4:29780112-29780131 None:intergenic 45.0%
! CCAATCAGGCCCAATTGTTT+TGG + chr5_4:29780116-29780135 None:intergenic 45.0%
CCAAAACAATTGGGCCTGAT+TGG - chr5_4:29780113-29780132 Msa0847540:intron 45.0%
! TGTACTGACAGCTTCCAATC+AGG + chr5_4:29780130-29780149 None:intergenic 45.0%
TGCAGAGTCAAGGATCTAGA+TGG + chr5_4:29780290-29780309 None:intergenic 45.0%
TCTAGATCCTTGACTCTGCA+AGG - chr5_4:29780290-29780309 Msa0847540:intron 45.0%
AATAGCACCTTGCAGAGTCA+AGG + chr5_4:29780300-29780319 None:intergenic 45.0%
!! TGACTCTGCAAGGTGCTATT+CGG - chr5_4:29780300-29780319 Msa0847540:intron 45.0%
GATTGCATACTTAAGGCCCA+AGG - chr5_4:29780647-29780666 Msa0847540:intron 45.0%
CCGTTCAATTTACAGGTCTG+AGG - chr5_4:29781610-29781629 Msa0847540:five_prime_UTR 45.0%
!!! TAAATATGAATTTTTTATAA+CGG - chr5_4:29780924-29780943 Msa0847540:intron 5.0%
GATGGAAACTGAAACAGCGC+AGG - chr5_4:29775428-29775447 Msa0847540:intron 50.0%
GTCATGTGACTGGAAGGTCA+CGG - chr5_4:29776339-29776358 Msa0847540:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG - chr5_4:29776340-29776359 Msa0847540:intron 50.0%
CTAAAGCTCTCGCATACGCA+GGG + chr5_4:29776450-29776469 None:intergenic 50.0%
ACTAAAGCTCTCGCATACGC+AGG + chr5_4:29776451-29776470 None:intergenic 50.0%
! ATGCGAGAGCTTTAGTGCAC+CGG - chr5_4:29776455-29776474 Msa0847540:intron 50.0%
GATGAGTGTGCTTACTGGTC+AGG - chr5_4:29776645-29776664 Msa0847540:intron 50.0%
TGTTGCTATGAGCTTCGTCG+TGG - chr5_4:29776823-29776842 Msa0847540:intron 50.0%
GTTGCTATGAGCTTCGTCGT+GGG - chr5_4:29776824-29776843 Msa0847540:intron 50.0%
TTGCTATGAGCTTCGTCGTG+GGG - chr5_4:29776825-29776844 Msa0847540:intron 50.0%
CGAGGGCAAGATTATCTGCA+TGG - chr5_4:29776892-29776911 Msa0847540:CDS 50.0%
AGCAGTCATTTGAGTGGCTC+AGG + chr5_4:29777512-29777531 None:intergenic 50.0%
TGGGTACACAAATGGTCGCA+AGG - chr5_4:29777652-29777671 Msa0847540:CDS 50.0%
ATGAACTCGGTACAATGGCG+AGG + chr5_4:29777746-29777765 None:intergenic 50.0%
TATCAAGCAGCTTCGCAGCA+AGG + chr5_4:29777820-29777839 None:intergenic 50.0%
!! GCTGCTTGATAATGTGCACG+TGG - chr5_4:29777829-29777848 Msa0847540:CDS 50.0%
GATTTCATCAGGAGCTTGGG+CGG - chr5_4:29777876-29777895 Msa0847540:intron 50.0%
ATTTCATCAGGAGCTTGGGC+GGG - chr5_4:29777877-29777896 Msa0847540:intron 50.0%
AGCACCTTGAGCAAGACAAG+AGG - chr5_4:29778507-29778526 Msa0847540:intron 50.0%
GCACCTTGAGCAAGACAAGA+GGG - chr5_4:29778508-29778527 Msa0847540:intron 50.0%
CAAGACAAGAGGGAGCTACA+TGG - chr5_4:29778518-29778537 Msa0847540:intron 50.0%
TCATTCCCATGTGAGACGGT+TGG - chr5_4:29779403-29779422 Msa0847540:CDS 50.0%
CATTCCCATGTGAGACGGTT+GGG - chr5_4:29779404-29779423 Msa0847540:CDS 50.0%
! CTTTTCCCAACCGTCTCACA+TGG + chr5_4:29779412-29779431 None:intergenic 50.0%
CATGTGAGACGGTTGGGAAA+AGG - chr5_4:29779410-29779429 Msa0847540:CDS 50.0%
GGGAAAAGGGATTCTCGTGA+AGG - chr5_4:29779424-29779443 Msa0847540:CDS 50.0%
AAAGGGATTCTCGTGAAGGC+GGG - chr5_4:29779428-29779447 Msa0847540:CDS 50.0%
TGAGTGCTTCCGTTTGACAG+AGG - chr5_4:29779905-29779924 Msa0847540:CDS 50.0%
AGGGGTAACCTTGACGCAAC+TGG - chr5_4:29776306-29776325 Msa0847540:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr5_4:29776352-29776371 Msa0847540:intron 55.0%
! TGCGAGAGCTTTAGTGCACC+GGG - chr5_4:29776456-29776475 Msa0847540:intron 55.0%
TTCCAGAATCTCAGGCTGGG+CGG + chr5_4:29776953-29776972 None:intergenic 55.0%
CCGTTCCAGAATCTCAGGCT+GGG + chr5_4:29776956-29776975 None:intergenic 55.0%
! CCCAGCCTGAGATTCTGGAA+CGG - chr5_4:29776953-29776972 Msa0847540:CDS 55.0%
ACCGTTCCAGAATCTCAGGC+TGG + chr5_4:29776957-29776976 None:intergenic 55.0%
GAGTGGCATGTAGGCAGTGA+TGG - chr5_4:29776985-29777004 Msa0847540:intron 55.0%
GCTGGGAACCGATTGCCATT+TGG - chr5_4:29777385-29777404 Msa0847540:intron 55.0%
TTTCATCAGGAGCTTGGGCG+GGG - chr5_4:29777878-29777897 Msa0847540:intron 55.0%
GCTCCCTCTTGTCTTGCTCA+AGG + chr5_4:29778514-29778533 None:intergenic 55.0%
AAGGGATTCTCGTGAAGGCG+GGG - chr5_4:29779429-29779448 Msa0847540:CDS 55.0%
! GAAGGCGGGGGTGTAGAATT+TGG - chr5_4:29779442-29779461 Msa0847540:CDS 55.0%
CGGGAAGAGGTCCCACCATT+TGG + chr5_4:29776425-29776444 None:intergenic 60.0%
CATACGCAGGGTTCGGGAAG+AGG + chr5_4:29776438-29776457 None:intergenic 60.0%
CTCTCGCATACGCAGGGTTC+GGG + chr5_4:29776444-29776463 None:intergenic 60.0%
GCTCTCGCATACGCAGGGTT+CGG + chr5_4:29776445-29776464 None:intergenic 60.0%
CTTCGTCGTGGGGAGCTTCT+AGG - chr5_4:29776835-29776854 Msa0847540:intron 60.0%
GGGGAGCTTCTAGGTGGTAC+TGG - chr5_4:29776844-29776863 Msa0847540:intron 60.0%
AGGGATTCTCGTGAAGGCGG+GGG - chr5_4:29779430-29779449 Msa0847540:CDS 60.0%
CGTCGTGGGGAGCTTCTAGG+TGG - chr5_4:29776838-29776857 Msa0847540:intron 65.0%
TGCCGCCCAGCCTGAGATTC+TGG - chr5_4:29776948-29776967 Msa0847540:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 29775196 29781652 29775196 ID=Msa0847540;Name=Msa0847540
chr5_4 mRNA 29775196 29781652 29775196 ID=Msa0847540-mRNA-1;Parent=Msa0847540;Name=Msa0847540-mRNA-1;_AED=0.06;_eAED=0.09;_QI=113|0.9|0.81|1|1|1|11|0|855
chr5_4 exon 29775196 29775264 29775196 ID=Msa0847540-mRNA-1:exon:10964;Parent=Msa0847540-mRNA-1
chr5_4 exon 29776180 29776266 29776180 ID=Msa0847540-mRNA-1:exon:10963;Parent=Msa0847540-mRNA-1
chr5_4 exon 29776871 29776990 29776871 ID=Msa0847540-mRNA-1:exon:10962;Parent=Msa0847540-mRNA-1
chr5_4 exon 29777627 29777712 29777627 ID=Msa0847540-mRNA-1:exon:10961;Parent=Msa0847540-mRNA-1
chr5_4 exon 29777810 29777882 29777810 ID=Msa0847540-mRNA-1:exon:10960;Parent=Msa0847540-mRNA-1
chr5_4 exon 29778040 29778417 29778040 ID=Msa0847540-mRNA-1:exon:10959;Parent=Msa0847540-mRNA-1
chr5_4 exon 29778908 29779225 29778908 ID=Msa0847540-mRNA-1:exon:10958;Parent=Msa0847540-mRNA-1
chr5_4 exon 29779360 29780098 29779360 ID=Msa0847540-mRNA-1:exon:10957;Parent=Msa0847540-mRNA-1
chr5_4 exon 29780187 29780253 29780187 ID=Msa0847540-mRNA-1:exon:10956;Parent=Msa0847540-mRNA-1
chr5_4 exon 29780694 29780832 29780694 ID=Msa0847540-mRNA-1:exon:10955;Parent=Msa0847540-mRNA-1
chr5_4 exon 29781048 29781652 29781048 ID=Msa0847540-mRNA-1:exon:10954;Parent=Msa0847540-mRNA-1
chr5_4 five_prime_UTR 29781540 29781652 29781540 ID=Msa0847540-mRNA-1:five_prime_utr;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29781048 29781539 29781048 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29780694 29780832 29780694 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29780187 29780253 29780187 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29779360 29780098 29779360 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29778908 29779225 29778908 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29778040 29778417 29778040 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29777810 29777882 29777810 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29777627 29777712 29777627 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29776871 29776990 29776871 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29776180 29776266 29776180 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
chr5_4 CDS 29775196 29775264 29775196 ID=Msa0847540-mRNA-1:cds;Parent=Msa0847540-mRNA-1
Gene Sequence

>Msa0847540

ATGAGTAATGCAGAGAAGAAGGAGGCTTTAAGGAGAATGTTAGAGAATGATGAAGAAACTGATAAAGATCCTTCTTCTGCTGATCTGAGAAAGAAACGTGGCAGAAAGAAAAAAGTGAAGATGGAAACTGAAACAGCGCAGGAATGTTCTTCTTTTTTTGTTGCTGTTGCTGTAAATAAGAGTAAAGTGGTGGAAAAAGTTGTGAAGAAGAAAGAAAATCGAGGTAGGAAAAGGAAGACAACAATTTCTGATGAAAATAATGCTGCCAAAGAGAAGAAGAAGAAGAAGAAAGAAAATCGTGGTAGGAAGAGAAAGAGAATGTTTAGTTCTGAAGCTGTAAAAGAGGAGGAAAATGGTGGTTTTGTGAAGAAGGAGAAGAAGGAACCTAATGGGAAAAGAAAAATGCCTGTATCTGATAATAATAATAATAATAATAAAGGAGGTTATGCTTTAAGAAGTGCTGAAAAAATGAAACTTGATTGCATGCATAAGAAGACTAAGAACAAGACAGAAAGCAACAATGATCATGACATTGAAGCTTCCAAGTATATGCTAGAATACCTTCTTCCATATTTAAGACAATTAGATCTAGAACAAATGGCCGAAATGGAGATAGAAGCCAAAATACAAGGGCTCTCATCACTCTCTGAGCTAAAGATAAAAGTAGCATATTGCTCTAAAGATGAGTGTGCTTACTGTGACAACTGCCAGACCTCGATATTTGACTACCACAGAAGTTGTGCAAAATGCTCTTTTGACCTTTGTCTTCGCTGTTGCTATGAGCTTCGTCGTGGGGAGCTTCTAGGTGGTACTGGTCCAATTGAGTTTGAGTTAATCAACCGAGGGCAAGATTATCTGCATGGTGAGATAATAACCGGAGATAATGAATCTCATGCTGCCGCCCAGCCTGAGATTCTGGAACGGTCAAAATCTGAGTGGCATGTAGGCAGTGATGGTAACATTCGCTGTCCAAAAGCCAATAATGAAGGTGATCATGGTTTCCTTGAGCTGAGACGAATGTTACCCCCAAATTGCATTTCTGAGTTGGTATGTAAAGCAAAACAACTTAAAGAAGCCGTTAATCTCGAAGAGATCAAGGAGACTCTTGATAATGTTTGCTCTTGTTTGAAGCCTGTTAAGAAGGAAGATAATATACTGAATAACACAGGGAAGGCGACTTTTCGTGAAGATTCCAGTGAAAACTTTTTATACTGTCCTAAGGCTATTGATCTACATAATCACGAGAAGGATTTAAGACATTTTCAATGGCACTGGAGAAAAGGGGAGCCTGTAATTGTCAACAACGTTCTTGAATTAAGTACGTCTGGTTTAAGCTGGGAACCGATTGCCATTTGGCGTGCATTTCATCAGATAAGTGATACCAATGACAATTCACTTTCGAATGTGAAGGCAATTGATTGCTTAAATTGGTGCCAGGGAGATATTAAAGTGCATGATTTCTTTACTGGGTACACAAATGGTCGCAAGGATAAGCTTGATTGGCCTCAGCTATTGAAATTGAATGATCGGCCTCCTTATTTATTTGAGAAAAATTTGCCTCGCCATTGTACCGAGTTCATATCCTCCTTGCCATATAAAGAATATACAGATCCTTTCAAAGGTGATCTTAACCTTGCTGCGAAGCTGCTTGATAATGTGCACGTGGGACCAAAAACATATATTGCTTATGGATTTCATCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCACTGTGATATGTCTGATGTAGTAAATGTGTTGACTCATGTTGCTAAAGTGGAACTGGAAAATGTGGGGATTACTGCAATTAAGAAATTAACACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCAGGATGGAGAGACCAATGTTGACAGGCTTGATAATCCGTCTTCTTCCGTAATTGCTTCAGATGAGCACAATAGTGTTCGAGTCATGGAAAATGAAAGTGGATTATGTGATGCGAAGGTGGTTGATTCAGTTCATCAAGAAAATAGTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGATGTACCTAAATTGAAGGAATATTTGAAGAAGCATTTTGGAGAGTTCAGGCATATCTATTGTTCTCCTTTAAAGCAGGTTATTCATCCCATCCATGATCAGACGTTTTATCTTACTAACAATCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCTTGGAGTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTGCCCACCAAGTCAGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCCGAAAATGTCGGTGAGTGCTTCCGTTTGACAGAGGAAATCCGTAAACTTCCAGTAAATCACTATTTCACAGAGGACAAATTGGAGGTGAAGAAAATGATTATACATGCTATGCTTGATGTGGTAGAAAAGTTGGAGAATGCAAGGTTAGTGATTGCATACTTAAGGCCCAAGGCTCACGATTTTGCCGATTTTGCCTACCGTTCAATTTACAGGTCTGAGGAAACCGATGTTCCTTTGTAA
Protein sequence

>Msa0847540

MSNAEKKEALRRMLENDEETDKDPSSADLRKKRGRKKKVKMETETAQECSSFFVAVAVNKSKVVEKVVKKKENRGRKRKTTISDENNAAKEKKKKKKENRGRKRKRMFSSEAVKEEENGGFVKKEKKEPNGKRKMPVSDNNNNNNKGGYALRSAEKMKLDCMHKKTKNKTESNNDHDIEASKYMLEYLLPYLRQLDLEQMAEMEIEAKIQGLSSLSELKIKVAYCSKDECAYCDNCQTSIFDYHRSCAKCSFDLCLRCCYELRRGELLGGTGPIEFELINRGQDYLHGEIITGDNESHAAAQPEILERSKSEWHVGSDGNIRCPKANNEGDHGFLELRRMLPPNCISELVCKAKQLKEAVNLEEIKETLDNVCSCLKPVKKEDNILNNTGKATFREDSSENFLYCPKAIDLHNHEKDLRHFQWHWRKGEPVIVNNVLELSTSGLSWEPIAIWRAFHQISDTNDNSLSNVKAIDCLNWCQGDIKVHDFFTGYTNGRKDKLDWPQLLKLNDRPPYLFEKNLPRHCTEFISSLPYKEYTDPFKGDLNLAAKLLDNVHVGPKTYIAYGFHQELGRGDSVTKLHCDMSDVVNVLTHVAKVELENVGITAIKKLTQKHLEQDKRELHGDNQDGETNVDRLDNPSSSVIASDEHNSVRVMENESGLCDAKVVDSVHQENSLDGALWDIFRREDVPKLKEYLKKHFGEFRHIYCSPLKQVIHPIHDQTFYLTNNHKKRLKEEYGIEPWSFVQKLGDAVFIPAGCAHQVRNLKSCTKVALDFVSPENVGECFRLTEEIRKLPVNHYFTEDKLEVKKMIIHAMLDVVEKLENARLVIAYLRPKAHDFADFAYRSIYRSEETDVPL*