Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164330 | XP_013468003.1 | 97.714 | 175 | 4 | 0 | 1 | 175 | 1 | 175 | 6.90e-124 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164330 | sp|Q9XH42|CET4_TOBAC | 68.182 | 176 | 54 | 2 | 1 | 175 | 1 | 175 | 4.92e-90 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164330 | A0A072VVB0 | 97.714 | 175 | 4 | 0 | 1 | 175 | 1 | 175 | 3.29e-124 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0164330 | 0.818847 | 1.582673e-52 | -8.615850e-47 |
| Msa0000190 | Msa0164330 | 0.833715 | 4.548735e-56 | -8.615850e-47 |
| Msa0003700 | Msa0164330 | 0.811938 | 5.450385e-51 | -8.615850e-47 |
| Msa0005890 | Msa0164330 | 0.811625 | 6.376976e-51 | -8.615850e-47 |
| Msa0017510 | Msa0164330 | 0.819344 | 1.220102e-52 | -8.615850e-47 |
| Msa0024550 | Msa0164330 | 0.964527 | 1.939133e-123 | -8.615850e-47 |
| Msa0027820 | Msa0164330 | 0.815392 | 9.463920e-52 | -8.615850e-47 |
| Msa0028420 | Msa0164330 | 0.804223 | 2.394453e-49 | -8.615850e-47 |
| Msa0042610 | Msa0164330 | 0.803301 | 3.720512e-49 | -8.615850e-47 |
| Msa0063890 | Msa0164330 | 0.825211 | 5.304063e-54 | -8.615850e-47 |
| Msa0076250 | Msa0164330 | 0.818101 | 2.336613e-52 | -8.615850e-47 |
| Msa0081520 | Msa0164330 | 0.811453 | 6.948252e-51 | -8.615850e-47 |
| Msa0089630 | Msa0164330 | 0.806314 | 8.737745e-50 | -8.615850e-47 |
| Msa0098040 | Msa0164330 | 0.821412 | 4.094378e-53 | -8.615850e-47 |
| Msa0101440 | Msa0164330 | 0.827861 | 1.238143e-54 | -8.615850e-47 |
| Msa0110970 | Msa0164330 | 0.803603 | 3.221582e-49 | -8.615850e-47 |
| Msa0112570 | Msa0164330 | 0.836493 | 9.061820e-57 | -8.615850e-47 |
| Msa0117140 | Msa0164330 | 0.802246 | 6.144734e-49 | -8.615850e-47 |
| Msa0120400 | Msa0164330 | 0.960446 | 1.445650e-118 | -8.615850e-47 |
| Msa0124060 | Msa0164330 | 0.807496 | 4.914257e-50 | -8.615850e-47 |
| Msa0124280 | Msa0164330 | 0.801304 | 9.593219e-49 | -8.615850e-47 |
| Msa0131900 | Msa0164330 | 0.820090 | 8.239809e-53 | -8.615850e-47 |
| Msa0136370 | Msa0164330 | 0.805062 | 1.600537e-49 | -8.615850e-47 |
| Msa0139060 | Msa0164330 | 0.805867 | 1.084673e-49 | -8.615850e-47 |
| Msa0157290 | Msa0164330 | 0.820991 | 5.119086e-53 | -8.615850e-47 |
| Msa0158600 | Msa0164330 | 0.809667 | 1.689432e-50 | -8.615850e-47 |
| Msa0164330 | Msa0168500 | 0.818606 | 1.795273e-52 | -8.615850e-47 |
| Msa0164330 | Msa0175730 | 0.824587 | 7.444838e-54 | -8.615850e-47 |
| Msa0164330 | Msa0186010 | 0.819097 | 1.388803e-52 | -8.615850e-47 |
| Msa0164330 | Msa0197100 | 0.845752 | 3.337715e-59 | -8.615850e-47 |
| Msa0164330 | Msa0211150 | 0.803540 | 3.320792e-49 | -8.615850e-47 |
| Msa0164330 | Msa0221000 | 0.809773 | 1.602895e-50 | -8.615850e-47 |
| Msa0164330 | Msa0221290 | 0.823916 | 1.070712e-53 | -8.615850e-47 |
| Msa0164330 | Msa0224780 | 0.821718 | 3.478628e-53 | -8.615850e-47 |
| Msa0164330 | Msa0225100 | 0.841429 | 4.778500e-58 | -8.615850e-47 |
| Msa0164330 | Msa0225860 | 0.826549 | 2.552395e-54 | -8.615850e-47 |
| Msa0164330 | Msa0230740 | 0.817930 | 2.554522e-52 | -8.615850e-47 |
| Msa0164330 | Msa0230750 | 0.809353 | 1.972964e-50 | -8.615850e-47 |
| Msa0164330 | Msa0239030 | 0.863328 | 2.692582e-64 | -8.615850e-47 |
| Msa0164330 | Msa0244640 | 0.818848 | 1.582569e-52 | -8.615850e-47 |
| Msa0164330 | Msa0247940 | 0.808319 | 3.283325e-50 | -8.615850e-47 |
| Msa0164330 | Msa0261340 | 0.814252 | 1.693982e-51 | -8.615850e-47 |
| Msa0164330 | Msa0265850 | 0.825528 | 4.463586e-54 | -8.615850e-47 |
| Msa0164330 | Msa0266180 | 0.832509 | 9.075274e-56 | -8.615850e-47 |
| Msa0164330 | Msa0272660 | 0.802943 | 4.413754e-49 | -8.615850e-47 |
| Msa0164330 | Msa0276740 | 0.866726 | 2.308504e-65 | -8.615850e-47 |
| Msa0164330 | Msa0283330 | 0.802193 | 6.301902e-49 | -8.615850e-47 |
| Msa0164330 | Msa0287740 | 0.837889 | 3.982495e-57 | -8.615850e-47 |
| Msa0164330 | Msa0292400 | 0.807581 | 4.714142e-50 | -8.615850e-47 |
| Msa0164330 | Msa0297790 | 0.810421 | 1.162628e-50 | -8.615850e-47 |
| Msa0164330 | Msa0298470 | 0.805847 | 1.095605e-49 | -8.615850e-47 |
| Msa0164330 | Msa0300270 | 0.831093 | 2.029868e-55 | -8.615850e-47 |
| Msa0164330 | Msa0300320 | 0.827462 | 1.544093e-54 | -8.615850e-47 |
| Msa0164330 | Msa0300690 | 0.805839 | 1.099861e-49 | -8.615850e-47 |
| Msa0164330 | Msa0316680 | 0.849020 | 4.227682e-60 | -8.615850e-47 |
| Msa0164330 | Msa0321620 | 0.801689 | 7.999716e-49 | -8.615850e-47 |
| Msa0164330 | Msa0336320 | 0.801026 | 1.093297e-48 | -8.615850e-47 |
| Msa0164330 | Msa0337700 | 0.836060 | 1.167780e-56 | -8.615850e-47 |
| Msa0164330 | Msa0345330 | 0.814306 | 1.648061e-51 | -8.615850e-47 |
| Msa0164330 | Msa0345410 | 0.811594 | 6.474490e-51 | -8.615850e-47 |
| Msa0164330 | Msa0357340 | 0.816340 | 5.816725e-52 | -8.615850e-47 |
| Msa0164330 | Msa0363200 | 0.804528 | 2.068759e-49 | -8.615850e-47 |
| Msa0164330 | Msa0367870 | 0.815057 | 1.123341e-51 | -8.615850e-47 |
| Msa0164330 | Msa0378720 | 0.843545 | 1.311641e-58 | -8.615850e-47 |
| Msa0164330 | Msa0385390 | 0.816527 | 5.280846e-52 | -8.615850e-47 |
| Msa0164330 | Msa0392510 | 0.800773 | 1.231625e-48 | -8.615850e-47 |
| Msa0164330 | Msa0415320 | 0.828118 | 1.073559e-54 | -8.615850e-47 |
| Msa0164330 | Msa0424790 | 0.800299 | 1.538342e-48 | -8.615850e-47 |
| Msa0164330 | Msa0428370 | 0.806808 | 6.870931e-50 | -8.615850e-47 |
| Msa0164330 | Msa0430260 | 0.800124 | 1.669566e-48 | -8.615850e-47 |
| Msa0164330 | Msa0460590 | 0.828289 | 9.766044e-55 | -8.615850e-47 |
| Msa0164330 | Msa0464680 | 0.827853 | 1.243321e-54 | -8.615850e-47 |
| Msa0164330 | Msa0465410 | 0.806857 | 6.710740e-50 | -8.615850e-47 |
| Msa0164330 | Msa0467430 | 0.801691 | 7.990353e-49 | -8.615850e-47 |
| Msa0164330 | Msa0467490 | 0.806824 | 6.817575e-50 | -8.615850e-47 |
| Msa0164330 | Msa0474730 | 0.829873 | 4.033968e-55 | -8.615850e-47 |
| Msa0164330 | Msa0479170 | 0.801961 | 7.033957e-49 | -8.615850e-47 |
| Msa0164330 | Msa0504610 | 0.815907 | 7.268093e-52 | -8.615850e-47 |
| Msa0164330 | Msa0511270 | 0.805141 | 1.540572e-49 | -8.615850e-47 |
| Msa0164330 | Msa0523000 | 0.804674 | 1.928844e-49 | -8.615850e-47 |
| Msa0164330 | Msa0530050 | 0.802812 | 4.696791e-49 | -8.615850e-47 |
| Msa0164330 | Msa0530540 | 0.802439 | 5.606973e-49 | -8.615850e-47 |
| Msa0164330 | Msa0535040 | 0.808889 | 2.480957e-50 | -8.615850e-47 |
| Msa0164330 | Msa0548470 | 0.818861 | 1.571734e-52 | -8.615850e-47 |
| Msa0164330 | Msa0556430 | 0.825315 | 5.011176e-54 | -8.615850e-47 |
| Msa0164330 | Msa0580370 | 0.814520 | 1.477565e-51 | -8.615850e-47 |
| Msa0164330 | Msa0591790 | 0.812316 | 4.507081e-51 | -8.615850e-47 |
| Msa0164330 | Msa0597790 | 0.802768 | 4.796245e-49 | -8.615850e-47 |
| Msa0164330 | Msa0600700 | 0.800026 | 1.748473e-48 | -8.615850e-47 |
| Msa0164330 | Msa0602460 | 0.803081 | 4.132183e-49 | -8.615850e-47 |
| Msa0164330 | Msa0626450 | 0.814397 | 1.572932e-51 | -8.615850e-47 |
| Msa0164330 | Msa0626490 | 0.814882 | 1.228265e-51 | -8.615850e-47 |
| Msa0164330 | Msa0626510 | 0.821007 | 5.074596e-53 | -8.615850e-47 |
| Msa0164330 | Msa0637560 | 0.802393 | 5.730716e-49 | -8.615850e-47 |
| Msa0164330 | Msa0637580 | 0.803239 | 3.833101e-49 | -8.615850e-47 |
| Msa0164330 | Msa0664600 | 0.814199 | 1.739669e-51 | -8.615850e-47 |
| Msa0164330 | Msa0669320 | 0.813780 | 2.152456e-51 | -8.615850e-47 |
| Msa0164330 | Msa0697160 | 0.811110 | 8.246434e-51 | -8.615850e-47 |
| Msa0164330 | Msa0710800 | 0.801832 | 7.476389e-49 | -8.615850e-47 |
| Msa0164330 | Msa0712270 | 0.814663 | 1.373667e-51 | -8.615850e-47 |
| Msa0164330 | Msa0727930 | 0.813776 | 2.157261e-51 | -8.615850e-47 |
| Msa0164330 | Msa0733390 | 0.823490 | 1.346893e-53 | -8.615850e-47 |
| Msa0164330 | Msa0739730 | 0.807105 | 5.944953e-50 | -8.615850e-47 |
| Msa0164330 | Msa0741240 | 0.813325 | 2.710448e-51 | -8.615850e-47 |
| Msa0164330 | Msa0762910 | 0.806937 | 6.454548e-50 | -8.615850e-47 |
| Msa0164330 | Msa0769180 | 0.851837 | 6.839537e-61 | -8.615850e-47 |
| Msa0164330 | Msa0789830 | 0.805916 | 1.059618e-49 | -8.615850e-47 |
| Msa0164330 | Msa0795870 | 0.819821 | 9.496157e-53 | -8.615850e-47 |
| Msa0164330 | Msa0805330 | 0.828269 | 9.874356e-55 | -8.615850e-47 |
| Msa0164330 | Msa0816150 | 0.819739 | 9.913133e-53 | -8.615850e-47 |
| Msa0164330 | Msa0824840 | 0.801476 | 8.842626e-49 | -8.615850e-47 |
| Msa0164330 | Msa0828560 | 0.811766 | 5.941587e-51 | -8.615850e-47 |
| Msa0164330 | Msa0829330 | 0.809102 | 2.233247e-50 | -8.615850e-47 |
| Msa0164330 | Msa0833650 | 0.817474 | 3.236462e-52 | -8.615850e-47 |
| Msa0164330 | Msa0842680 | 0.823700 | 1.202933e-53 | -8.615850e-47 |
| Msa0164330 | Msa0843220 | 0.800845 | 1.190300e-48 | -8.615850e-47 |
| Msa0164330 | Msa0844490 | 0.802392 | 5.732520e-49 | -8.615850e-47 |
| Msa0164330 | Msa0847540 | 0.819833 | 9.434728e-53 | -8.615850e-47 |
| Msa0164330 | Msa0861510 | 0.802466 | 5.536959e-49 | -8.615850e-47 |
| Msa0164330 | Msa0861600 | 0.805319 | 1.413756e-49 | -8.615850e-47 |
| Msa0164330 | Msa0861870 | 0.819530 | 1.106733e-52 | -8.615850e-47 |
| Msa0164330 | Msa0875290 | 0.807307 | 5.388334e-50 | -8.615850e-47 |
| Msa0164330 | Msa0876550 | 0.822984 | 1.767910e-53 | -8.615850e-47 |
| Msa0164330 | Msa0880140 | 0.814974 | 1.172290e-51 | -8.615850e-47 |
| Msa0164330 | Msa0880650 | 0.804844 | 1.776940e-49 | -8.615850e-47 |
| Msa0164330 | Msa0890320 | 0.801620 | 8.262829e-49 | -8.615850e-47 |
| Msa0164330 | Msa0902510 | 0.811513 | 6.742787e-51 | -8.615850e-47 |
| Msa0164330 | Msa0909140 | 0.813899 | 2.025804e-51 | -8.615850e-47 |
| Msa0164330 | Msa0910430 | 0.808265 | 3.372427e-50 | -8.615850e-47 |
| Msa0164330 | Msa0911540 | 0.832991 | 6.891213e-56 | -8.615850e-47 |
| Msa0164330 | Msa0925180 | 0.801965 | 7.020604e-49 | -8.615850e-47 |
| Msa0164330 | Msa0945110 | 0.807861 | 4.109466e-50 | -8.615850e-47 |
| Msa0164330 | Msa0948290 | 0.819565 | 1.086621e-52 | -8.615850e-47 |
| Msa0164330 | Msa0964840 | 0.836932 | 7.002418e-57 | -8.615850e-47 |
| Msa0164330 | Msa0967380 | 0.931946 | 1.776119e-94 | -8.615850e-47 |
| Msa0164330 | Msa0967870 | 0.838840 | 2.263551e-57 | -8.615850e-47 |
| Msa0164330 | Msa0972100 | 0.805936 | 1.049275e-49 | -8.615850e-47 |
| Msa0164330 | Msa0980200 | 0.818029 | 2.426282e-52 | -8.615850e-47 |
| Msa0164330 | Msa1005870 | 0.819927 | 8.980952e-53 | -8.615850e-47 |
| Msa0164330 | Msa1019430 | 0.840718 | 7.347030e-58 | -8.615850e-47 |
| Msa0164330 | Msa1019470 | 0.820210 | 7.737580e-53 | -8.615850e-47 |
| Msa0164330 | Msa1020510 | 0.814598 | 1.419710e-51 | -8.615850e-47 |
| Msa0164330 | Msa1039020 | 0.810427 | 1.158866e-50 | -8.615850e-47 |
| Msa0164330 | Msa1043370 | 0.866825 | 2.147463e-65 | -8.615850e-47 |
| Msa0164330 | Msa1045140 | 0.800114 | 1.677659e-48 | -8.615850e-47 |
| Msa0164330 | Msa1047980 | 0.815073 | 1.114253e-51 | -8.615850e-47 |
| Msa0164330 | Msa1075540 | 0.811727 | 6.057735e-51 | -8.615850e-47 |
| Msa0164330 | Msa1087650 | 0.820728 | 5.882562e-53 | -8.615850e-47 |
| Msa0164330 | Msa1092010 | 0.820673 | 6.058701e-53 | -8.615850e-47 |
| Msa0164330 | Msa1121490 | 0.807648 | 4.562281e-50 | -8.615850e-47 |
| Msa0164330 | Msa1123380 | 0.810660 | 1.032336e-50 | -8.615850e-47 |
| Msa0164330 | Msa1132840 | 0.812578 | 3.951922e-51 | -8.615850e-47 |
| Msa0164330 | Msa1142020 | 0.804371 | 2.230859e-49 | -8.615850e-47 |
| Msa0164330 | Msa1144450 | 0.826141 | 3.192145e-54 | -8.615850e-47 |
| Msa0164330 | Msa1155170 | -0.806258 | 8.977463e-50 | -8.615850e-47 |
| Msa0164330 | Msa1186020 | 0.815525 | 8.841308e-52 | -8.615850e-47 |
| Msa0164330 | Msa1193170 | 0.810103 | 1.361382e-50 | -8.615850e-47 |
| Msa0164330 | Msa1205280 | 0.812110 | 4.999343e-51 | -8.615850e-47 |
| Msa0164330 | Msa1208430 | 0.800254 | 1.571328e-48 | -8.615850e-47 |
| Msa0164330 | Msa1228200 | 0.802381 | 5.762894e-49 | -8.615850e-47 |
| Msa0164330 | Msa1236410 | 0.857821 | 1.256848e-62 | -8.615850e-47 |
| Msa0164330 | Msa1238820 | 0.819315 | 1.238627e-52 | -8.615850e-47 |
| Msa0164330 | Msa1251930 | 0.801794 | 7.610488e-49 | -8.615850e-47 |
| Msa0164330 | Msa1267770 | 0.835648 | 1.485224e-56 | -8.615850e-47 |
| Msa0164330 | Msa1297230 | 0.825196 | 5.348965e-54 | -8.615850e-47 |
| Msa0164330 | Msa1326630 | 0.808200 | 3.480510e-50 | -8.615850e-47 |
| Msa0164330 | Msa1330420 | 0.829965 | 3.830634e-55 | -8.615850e-47 |
| Msa0164330 | Msa1343430 | 0.812148 | 4.905594e-51 | -8.615850e-47 |
| Msa0164330 | Msa1357790 | 0.827592 | 1.436901e-54 | -8.615850e-47 |
| Msa0164330 | Msa1366340 | 0.885663 | 6.695822e-72 | -8.615850e-47 |
| Msa0164330 | Msa1373100 | 0.819730 | 9.961360e-53 | -8.615850e-47 |
| Msa0164330 | Msa1374550 | 0.807090 | 5.990956e-50 | -8.615850e-47 |
| Msa0164330 | Msa1387870 | 0.818350 | 2.051744e-52 | -8.615850e-47 |
| Msa0164330 | Msa1390690 | 0.801032 | 1.089972e-48 | -8.615850e-47 |
| Msa0164330 | Msa1390700 | 0.809514 | 1.822480e-50 | -8.615850e-47 |
| Msa0164330 | Msa1419370 | 0.822539 | 2.243730e-53 | -8.615850e-47 |
| Msa0164330 | Msa1422950 | 0.819526 | 1.108695e-52 | -8.615850e-47 |
| Msa0164330 | Msa1440960 | 0.806536 | 7.843315e-50 | -8.615850e-47 |
| Msa0164330 | Msa1450100 | 0.824958 | 6.086329e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164330 | MtrunA17_Chr1g0178751 | 97.714 | 175 | 4 | 0 | 1 | 175 | 1 | 175 | 6.34e-128 | 356 |
| Msa0164330 | MtrunA17_Chr7g0266201 | 68.571 | 175 | 54 | 1 | 1 | 175 | 1 | 174 | 8.51e-91 | 262 |
| Msa0164330 | MtrunA17_Chr2g0321301 | 68.786 | 173 | 53 | 1 | 3 | 175 | 2 | 173 | 2.20e-88 | 256 |
| Msa0164330 | MtrunA17_Chr6g0472451 | 63.905 | 169 | 59 | 2 | 7 | 175 | 6 | 172 | 1.44e-80 | 236 |
| Msa0164330 | MtrunA17_Chr7g0252784 | 52.047 | 171 | 80 | 1 | 1 | 171 | 1 | 169 | 4.80e-65 | 197 |
| Msa0164330 | MtrunA17_Chr7g0214771 | 51.515 | 165 | 77 | 2 | 5 | 168 | 5 | 167 | 8.67e-61 | 186 |
| Msa0164330 | MtrunA17_Chr6g0461711 | 51.786 | 168 | 79 | 2 | 1 | 168 | 1 | 166 | 2.54e-60 | 185 |
| Msa0164330 | MtrunA17_Chr7g0214761 | 51.807 | 166 | 77 | 2 | 7 | 171 | 7 | 170 | 6.91e-60 | 184 |
| Msa0164330 | MtrunA17_Chr7g0252800 | 50.909 | 165 | 79 | 1 | 7 | 171 | 8 | 170 | 5.83e-57 | 176 |
| Msa0164330 | MtrunA17_Chr8g0392741 | 47.429 | 175 | 90 | 2 | 1 | 175 | 1 | 173 | 3.05e-54 | 169 |
| Msa0164330 | MtrunA17_Chr7g0252811 | 50.617 | 162 | 74 | 4 | 7 | 168 | 32 | 187 | 3.07e-52 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164330 | AT5G03840.1 | 66.102 | 177 | 55 | 2 | 1 | 175 | 4 | 177 | 7.47e-87 | 253 |
| Msa0164330 | AT2G27550.1 | 63.636 | 176 | 62 | 2 | 1 | 175 | 1 | 175 | 3.50e-82 | 241 |
| Msa0164330 | AT5G62040.1 | 61.765 | 170 | 63 | 2 | 7 | 175 | 6 | 174 | 8.23e-75 | 222 |
| Msa0164330 | AT1G65480.1 | 53.333 | 165 | 75 | 2 | 7 | 171 | 7 | 169 | 1.20e-63 | 194 |
| Msa0164330 | AT1G65480.2 | 53.333 | 165 | 75 | 2 | 7 | 171 | 51 | 213 | 1.74e-63 | 195 |
| Msa0164330 | AT4G20370.1 | 52.727 | 165 | 76 | 2 | 7 | 171 | 7 | 169 | 2.26e-60 | 185 |
| Msa0164330 | AT1G18100.1 | 48.555 | 173 | 88 | 1 | 3 | 175 | 2 | 173 | 4.80e-56 | 174 |
Find 71 sgRNAs with CRISPR-Local
Find 447 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACTTCCTAGCGCCTTCT+AGG | 0.228115 | 1_4:-43591869 | None:intergenic |
| TGCAAATGTTCTTTCATATA+AGG | 0.264953 | 1_4:-43585847 | None:intergenic |
| ATATCTTGTCTCGCTTATAA+TGG | 0.296138 | 1_4:+43585361 | Msa0164330:exon |
| AGAAAATGGATCGGTTATTC+CGG | 0.323728 | 1_4:-43592189 | None:intergenic |
| TTGAAATAGGCAGCAGCAAC+AGG | 0.326339 | 1_4:-43591827 | None:intergenic |
| ACTTCAGATCCACTAATTCT+TGG | 0.327033 | 1_4:+43585392 | Msa0164330:CDS |
| TGCCCTTCTTGCATTGAAAT+AGG | 0.331372 | 1_4:-43591840 | None:intergenic |
| TGGATTCCTATATTAGGCTT+TGG | 0.361496 | 1_4:-43591686 | None:intergenic |
| ATGATAGACCCGGATGTTCC+TGG | 0.362611 | 1_4:+43585814 | Msa0164330:CDS |
| TGCTGCTAGCTAGGGCTATA+TGG | 0.363861 | 1_4:+43591901 | Msa0164330:three_prime_UTR |
| CTAATTCTTGGGAGAGTGAT+AGG | 0.367036 | 1_4:+43585404 | Msa0164330:CDS |
| TACCTGTGGATTCCTATATT+AGG | 0.369722 | 1_4:-43591692 | None:intergenic |
| ATAAAGTGGTTTCTGATTGA+TGG | 0.374961 | 1_4:-43591924 | None:intergenic |
| AGAAGGCGCTAGGAAGTAGA+AGG | 0.385345 | 1_4:+43591872 | Msa0164330:exon |
| ATCACTCTCCCAAGAATTAG+TGG | 0.393204 | 1_4:-43585401 | None:intergenic |
| GAAAGACCAAAGCCTAATAT+AGG | 0.393718 | 1_4:+43591680 | Msa0164330:CDS |
| TTGAAGTGATCCCTTGAAAA+AGG | 0.403656 | 1_4:-43591767 | None:intergenic |
| GGAACAACAGATTCCACATT+TGG | 0.406979 | 1_4:+43591513 | Msa0164330:CDS |
| GAAGGGCAACGGCTCCTAGA+AGG | 0.416697 | 1_4:+43591855 | Msa0164330:CDS |
| TATCTTGTCTCGCTTATAAT+GGG | 0.426195 | 1_4:+43585362 | Msa0164330:exon |
| CTTCAGATCCACTAATTCTT+GGG | 0.427576 | 1_4:+43585393 | Msa0164330:CDS |
| TCACTTGGGCCAGGAACATC+CGG | 0.429086 | 1_4:-43585823 | None:intergenic |
| GTCCTATTCAAGCAAGAAAA+GGG | 0.433490 | 1_4:+43591722 | Msa0164330:CDS |
| TCCAATCTCAATCCTTGGCT+TGG | 0.437325 | 1_4:-43585528 | None:intergenic |
| AATGTGGAATCTGTTGTTCC+TGG | 0.441986 | 1_4:-43591510 | None:intergenic |
| TGTCCTATTCAAGCAAGAAA+AGG | 0.447589 | 1_4:+43591721 | Msa0164330:CDS |
| TCTCCTCCAATCTCAATCCT+TGG | 0.456612 | 1_4:-43585533 | None:intergenic |
| GTGAATATTCTAGTAAATGA+TGG | 0.458984 | 1_4:-43585291 | None:intergenic |
| AATCTCAATCCTTGGCTTGG+TGG | 0.460499 | 1_4:-43585525 | None:intergenic |
| AGGGAAACGTGCTGCTAGCT+AGG | 0.460700 | 1_4:+43591892 | Msa0164330:three_prime_UTR |
| ACCAAGCCAAGGATTGAGAT+TGG | 0.488676 | 1_4:+43585527 | Msa0164330:CDS |
| GAAAATGGATCGGTTATTCC+GGG | 0.488787 | 1_4:-43592188 | None:intergenic |
| AACAACAAAGAAATCTTCAA+TGG | 0.490702 | 1_4:+43585476 | Msa0164330:CDS |
| AGGATGGTGACAGACATTCC+AGG | 0.505982 | 1_4:+43591492 | Msa0164330:intron |
| GGCTTGGTGGTAACTGAAGA+AGG | 0.508899 | 1_4:-43585512 | None:intergenic |
| ATCGGTTATTCCGGGACGGA+GGG | 0.516181 | 1_4:-43592180 | None:intergenic |
| ATATAAGGATCACTTGGGCC+AGG | 0.520355 | 1_4:-43585832 | None:intergenic |
| ATTATTTATTCCCTCCGTCC+CGG | 0.521989 | 1_4:+43592170 | Msa0164330:three_prime_UTR |
| TCTTTCATATAAGGATCACT+TGG | 0.526849 | 1_4:-43585838 | None:intergenic |
| AATATAATACCAGTGTAAAG+AGG | 0.529031 | 1_4:-43585568 | None:intergenic |
| CTGCCTATTTCAATGCAAGA+AGG | 0.532302 | 1_4:+43591837 | Msa0164330:CDS |
| GAGACAAGATATATGAATGA+AGG | 0.532629 | 1_4:-43585350 | None:intergenic |
| ACAAAATGATGATCATAAAG+TGG | 0.536848 | 1_4:-43591938 | None:intergenic |
| ATCCATAAACCTACCAAATG+TGG | 0.542587 | 1_4:-43591526 | None:intergenic |
| ACTAAACTAAAATTAACTTC+AGG | 0.549315 | 1_4:-43591994 | None:intergenic |
| GATCGGTTATTCCGGGACGG+AGG | 0.561673 | 1_4:-43592181 | None:intergenic |
| ATATGAAAGAACATTTGCAC+TGG | 0.561788 | 1_4:+43585851 | Msa0164330:CDS |
| ATATAATACCAGTGTAAAGA+GGG | 0.562460 | 1_4:-43585567 | None:intergenic |
| AAGGATTGAGATTGGAGGAG+AGG | 0.578470 | 1_4:+43585535 | Msa0164330:CDS |
| CTTTCATATAAGGATCACTT+GGG | 0.579211 | 1_4:-43585837 | None:intergenic |
| GGTGGTAACTGAAGAAGGAA+AGG | 0.582057 | 1_4:-43585507 | None:intergenic |
| GCTAGCATCAACATCAACAT+AGG | 0.584953 | 1_4:-43592074 | None:intergenic |
| GGGAAACGTGCTGCTAGCTA+GGG | 0.585437 | 1_4:+43591893 | Msa0164330:three_prime_UTR |
| AAGCCAAGGATTGAGATTGG+AGG | 0.587134 | 1_4:+43585530 | Msa0164330:CDS |
| GTGGTAACTGAAGAAGGAAA+GGG | 0.591441 | 1_4:-43585506 | None:intergenic |
| AACGGCTCCTAGAAGGCGCT+AGG | 0.601323 | 1_4:+43591862 | Msa0164330:CDS |
| CTTCAGTTACCACCAAGCCA+AGG | 0.603242 | 1_4:+43585516 | Msa0164330:CDS |
| CACTTGGGCCAGGAACATCC+GGG | 0.604987 | 1_4:-43585822 | None:intergenic |
| AGCCTAATATAGGAATCCAC+AGG | 0.609965 | 1_4:+43591690 | Msa0164330:CDS |
| TCTGCAGGTCATGATAGACC+CGG | 0.613879 | 1_4:+43585804 | Msa0164330:intron |
| AGATTGGAGGAGAGGACATG+AGG | 0.621266 | 1_4:+43585543 | Msa0164330:CDS |
| TTTCAATGCAAGAAGGGCAA+CGG | 0.623654 | 1_4:+43591844 | Msa0164330:CDS |
| TCCTATTCAAGCAAGAAAAG+GGG | 0.624185 | 1_4:+43591723 | Msa0164330:CDS |
| GAAGGCGCTAGGAAGTAGAA+GGG | 0.624914 | 1_4:+43591873 | Msa0164330:exon |
| TGCCTATTTCAATGCAAGAA+GGG | 0.625343 | 1_4:+43591838 | Msa0164330:CDS |
| ATGGATCGGTTATTCCGGGA+CGG | 0.649028 | 1_4:-43592184 | None:intergenic |
| TATTCAAGCAAGAAAAGGGG+AGG | 0.658997 | 1_4:+43591726 | Msa0164330:CDS |
| CATGAGGTCCCTCTTTACAC+TGG | 0.660776 | 1_4:+43585559 | Msa0164330:CDS |
| TGAAATAGGCAGCAGCAACA+GGG | 0.672006 | 1_4:-43591826 | None:intergenic |
| CAGCAGCAACAGGGACACCA+AGG | 0.674758 | 1_4:-43591817 | None:intergenic |
| ATAGGACAAACACATACCTG+TGG | 0.703087 | 1_4:-43591706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTAATTTTTTTATAAT+AGG | - | chr1_4:43588258-43588277 | None:intergenic | 0.0% |
| !!! | ATAAATTCTTTTTTTTTTCA+TGG | + | chr1_4:43585601-43585620 | Msa0164330:intron | 10.0% |
| !!! | TAAATTCTTTTTTTTTTCAT+GGG | + | chr1_4:43585602-43585621 | Msa0164330:intron | 10.0% |
| !!! | TAATTATAGAAATGTATTTT+CGG | + | chr1_4:43585647-43585666 | Msa0164330:intron | 10.0% |
| !!! | GAAAAATATAACTTTTTTTT+AGG | - | chr1_4:43585757-43585776 | None:intergenic | 10.0% |
| !!! | AAAAAAGTTATATTTTTCAA+TGG | + | chr1_4:43585759-43585778 | Msa0164330:intron | 10.0% |
| !!! | TTTTATTATAAAACATTGTA+AGG | - | chr1_4:43588493-43588512 | None:intergenic | 10.0% |
| !!! | TATAAATTTTTAAGTTTATG+AGG | - | chr1_4:43589034-43589053 | None:intergenic | 10.0% |
| !!! | AGATAATTTTTTTACAAATA+AGG | + | chr1_4:43589223-43589242 | Msa0164330:intron | 10.0% |
| !! | AAAATAATTATGGAAAAAAA+TGG | - | chr1_4:43589471-43589490 | None:intergenic | 10.0% |
| !! | AAATTGAACTAAAATAATTA+TGG | - | chr1_4:43589481-43589500 | None:intergenic | 10.0% |
| !!! | TTAATAGTTTTTTATTTGAA+TGG | - | chr1_4:43589914-43589933 | None:intergenic | 10.0% |
| !! | ATAAAAAACTATTAAATCTA+TGG | + | chr1_4:43589919-43589938 | Msa0164330:intron | 10.0% |
| !! | GAATAAATAATATTAAAGAT+AGG | - | chr1_4:43590989-43591008 | None:intergenic | 10.0% |
| !!! | CTTATTGTTTTATTATAATA+GGG | - | chr1_4:43591201-43591220 | None:intergenic | 10.0% |
| !!! | TCTTATTGTTTTATTATAAT+AGG | - | chr1_4:43591202-43591221 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588835-43588854 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588835-43588854 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588835-43588854 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588835-43588854 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588835-43588854 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588835-43588854 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588835-43588854 | None:intergenic | 100.0% |
| ! | CGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588845-43588864 | None:intergenic | 100.0% |
| !! | AAACAAATTAAAAGTGATTA+TGG | + | chr1_4:43585999-43586018 | Msa0164330:intron | 15.0% |
| !! | AAACACATAAATAAAATAGT+TGG | - | chr1_4:43586108-43586127 | None:intergenic | 15.0% |
| !!! | ATAAAGTAAACTTTAAAAAG+CGG | - | chr1_4:43586735-43586754 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1_4:43587687-43587706 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1_4:43587688-43587707 | None:intergenic | 15.0% |
| !! | AAAGTAGAATATATTGTATT+GGG | - | chr1_4:43587728-43587747 | None:intergenic | 15.0% |
| !!! | TCACTATATAATTAACATTT+TGG | + | chr1_4:43588186-43588205 | Msa0164330:intron | 15.0% |
| !!! | TTTTTTATAATAGGATCAAA+GGG | - | chr1_4:43588249-43588268 | None:intergenic | 15.0% |
| !!! | TTTTTTTATAATAGGATCAA+AGG | - | chr1_4:43588250-43588269 | None:intergenic | 15.0% |
| !! | AATATGAAATATGAATGAAA+AGG | - | chr1_4:43589188-43589207 | None:intergenic | 15.0% |
| !!! | AAATTGTTATTTAATTCTGT+GGG | + | chr1_4:43589819-43589838 | Msa0164330:intron | 15.0% |
| !!! | ATTGGTCATATAAATTTTTA+TGG | - | chr1_4:43590119-43590138 | None:intergenic | 15.0% |
| !! | ATTGATCATATAAATCTTTA+TGG | - | chr1_4:43590161-43590180 | None:intergenic | 15.0% |
| !!! | TTTTTCTTATAATAAGAATC+AGG | + | chr1_4:43590567-43590586 | Msa0164330:intron | 15.0% |
| !!! | TTTTCTTATAATAAGAATCA+GGG | + | chr1_4:43590568-43590587 | Msa0164330:intron | 15.0% |
| !!! | TTATAATAGGGTTTTATTTT+AGG | - | chr1_4:43591189-43591208 | None:intergenic | 15.0% |
| !!! | ATTAACAATATATCCAATTT+TGG | + | chr1_4:43591446-43591465 | Msa0164330:intron | 15.0% |
| !!! | ACTTTTTTATTAACCAAAAT+TGG | - | chr1_4:43591462-43591481 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGTCATATTTTTC+AGG | + | chr1_4:43591472-43591491 | Msa0164330:intron | 15.0% |
| !!! | GTTATTATTTTGCTTGATTA+AGG | + | chr1_4:43585961-43585980 | Msa0164330:intron | 20.0% |
| !!! | ACAGTGTCTTTTTAATTAAA+AGG | + | chr1_4:43586596-43586615 | Msa0164330:intron | 20.0% |
| !!! | TAAAGTAAACTTTAAAAAGC+GGG | - | chr1_4:43586734-43586753 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGCTATGAAAAAA+TGG | + | chr1_4:43586914-43586933 | Msa0164330:intron | 20.0% |
| !!! | TATAAAAAATAGAGTTTTCG+CGG | + | chr1_4:43586962-43586981 | Msa0164330:intron | 20.0% |
| !!! | TTTTTACCTCTAATATAGTT+TGG | + | chr1_4:43587045-43587064 | Msa0164330:intron | 20.0% |
| !!! | TTTTACCTCTAATATAGTTT+GGG | + | chr1_4:43587046-43587065 | Msa0164330:intron | 20.0% |
| !! | TACATGATATTTGATATGTT+AGG | + | chr1_4:43587188-43587207 | Msa0164330:intron | 20.0% |
| !! | TATTTGATATGTTAGGAATT+AGG | + | chr1_4:43587195-43587214 | Msa0164330:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1_4:43587618-43587637 | None:intergenic | 20.0% |
| !! | GAAAGTAGAATATATTGTAT+TGG | - | chr1_4:43587729-43587748 | None:intergenic | 20.0% |
| !!! | AAGAAAAGCGTATAAATAAA+GGG | - | chr1_4:43587752-43587771 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGCGTATAAATAA+AGG | - | chr1_4:43587753-43587772 | None:intergenic | 20.0% |
| !!! | TATTTCTAAATCCATGATTT+TGG | - | chr1_4:43587966-43587985 | None:intergenic | 20.0% |
| !!! | TCTATTTCTTGTTTTTTTGA+AGG | - | chr1_4:43587999-43588018 | None:intergenic | 20.0% |
| !! | TTCAAAAAAACAAGAAATAG+AGG | + | chr1_4:43587998-43588017 | Msa0164330:intron | 20.0% |
| !!! | ATAAAAATGTTTGGCTTAAA+TGG | - | chr1_4:43588063-43588082 | None:intergenic | 20.0% |
| !!! | CAAGTTTTCATAAAAATGTT+TGG | - | chr1_4:43588072-43588091 | None:intergenic | 20.0% |
| !! | TTTATAATAAAACATCAACC+TGG | + | chr1_4:43588501-43588520 | Msa0164330:intron | 20.0% |
| !! | TAAACGTTTATATATTAACC+AGG | - | chr1_4:43588522-43588541 | None:intergenic | 20.0% |
| !! | AATATATAAACGTTTAGAGA+CGG | + | chr1_4:43588526-43588545 | Msa0164330:intron | 20.0% |
| !!! | TAGCTTTTTCCAAATTTTAA+TGG | + | chr1_4:43588776-43588795 | Msa0164330:intron | 20.0% |
| !!! | TACTTTTAACTAGAGTAAAT+AGG | + | chr1_4:43588812-43588831 | Msa0164330:intron | 20.0% |
| !! | ATTAATGTTATGCAATTTCA+GGG | - | chr1_4:43588922-43588941 | None:intergenic | 20.0% |
| !!! | AATAGAATTTTGATGACAAT+AGG | - | chr1_4:43589111-43589130 | None:intergenic | 20.0% |
| !! | AATATATGCCAAAGAAATAA+TGG | + | chr1_4:43589147-43589166 | Msa0164330:intron | 20.0% |
| !!! | CTTGATATCTTTTTAATGTT+TGG | - | chr1_4:43589261-43589280 | None:intergenic | 20.0% |
| !!! | CATGATGTTTTGATTAATAT+TGG | + | chr1_4:43589737-43589756 | Msa0164330:intron | 20.0% |
| !!! | TATTTTTGATTGTAGATCAT+GGG | - | chr1_4:43589780-43589799 | None:intergenic | 20.0% |
| !!! | TTATTTTTGATTGTAGATCA+TGG | - | chr1_4:43589781-43589800 | None:intergenic | 20.0% |
| !!! | GAAATTGTTATTTAATTCTG+TGG | + | chr1_4:43589818-43589837 | Msa0164330:intron | 20.0% |
| !!! | CATATGAATTAGTAATGTTT+TGG | - | chr1_4:43590270-43590289 | None:intergenic | 20.0% |
| !!! | ACTTCTAAGAACTTTATTAT+TGG | - | chr1_4:43590613-43590632 | None:intergenic | 20.0% |
| !! | CTGAGAAATTATTTATATCT+GGG | - | chr1_4:43590638-43590657 | None:intergenic | 20.0% |
| !! | CTTGTTAAAAAATCTACTTA+CGG | - | chr1_4:43590661-43590680 | None:intergenic | 20.0% |
| !!! | TTAGAAAATGTTTCTCTTTT+AGG | + | chr1_4:43590924-43590943 | Msa0164330:intron | 20.0% |
| !! | AAATAATATTAAAGATAGGG+TGG | - | chr1_4:43590985-43591004 | None:intergenic | 20.0% |
| !! | CTTACTAAAAACAATTCAAT+AGG | + | chr1_4:43591244-43591263 | Msa0164330:intron | 20.0% |
| !!! | CAATATGTAGTTTTTTTTGA+AGG | - | chr1_4:43591297-43591316 | None:intergenic | 20.0% |
| !! | ATTACGTAATACTAATGAAT+TGG | + | chr1_4:43591402-43591421 | Msa0164330:intron | 20.0% |
| !! | ACTAAACTAAAATTAACTTC+AGG | - | chr1_4:43591997-43592016 | None:intergenic | 20.0% |
| !!! | TTTTAACTAATTGTAACTGT+TGG | + | chr1_4:43592115-43592134 | Msa0164330:three_prime_UTR | 20.0% |
| ! | GTGAATATTCTAGTAAATGA+TGG | - | chr1_4:43585294-43585313 | None:intergenic | 25.0% |
| !!! | ATAAGTTACAGTCATTTTTG+TGG | - | chr1_4:43585456-43585475 | None:intergenic | 25.0% |
| ! | AACAACAAAGAAATCTTCAA+TGG | + | chr1_4:43585476-43585495 | Msa0164330:CDS | 25.0% |
| ! | ATATAATACCAGTGTAAAGA+GGG | - | chr1_4:43585570-43585589 | None:intergenic | 25.0% |
| ! | AATATAATACCAGTGTAAAG+AGG | - | chr1_4:43585571-43585590 | None:intergenic | 25.0% |
| ! | TGCAAATGTTCTTTCATATA+AGG | - | chr1_4:43585850-43585869 | None:intergenic | 25.0% |
| !! | GAATTTAAGATAAACCTAGT+TGG | + | chr1_4:43585919-43585938 | Msa0164330:intron | 25.0% |
| ! | TAAAGCTATATATACCAACT+AGG | - | chr1_4:43585936-43585955 | None:intergenic | 25.0% |
| !! | ATCGATTTAGATATTACTTG+TGG | - | chr1_4:43586037-43586056 | None:intergenic | 25.0% |
| ! | AATGAGGGTTATGTAATAAA+TGG | - | chr1_4:43586191-43586210 | None:intergenic | 25.0% |
| !! | TATGATTTGTACGAAAATGA+GGG | - | chr1_4:43586206-43586225 | None:intergenic | 25.0% |
| !!! | TACTACTTGCTTTTCTAAAA+GGG | - | chr1_4:43586328-43586347 | None:intergenic | 25.0% |
| ! | ATCTATCTTGATGTCATTAA+TGG | - | chr1_4:43586507-43586526 | None:intergenic | 25.0% |
| !! | TTAAAATATGTTGGTGCTTA+TGG | - | chr1_4:43586778-43586797 | None:intergenic | 25.0% |
| !! | ATAAAAAATAGAGTTTTCGC+GGG | + | chr1_4:43586963-43586982 | Msa0164330:intron | 25.0% |
| ! | TTTACCTCTAATATAGTTTG+GGG | + | chr1_4:43587047-43587066 | Msa0164330:intron | 25.0% |
| ! | AACTTTGTGGATTCAAAAAT+CGG | - | chr1_4:43587367-43587386 | None:intergenic | 25.0% |
| !! | CATCAAATGAATTGATGATA+TGG | + | chr1_4:43587475-43587494 | Msa0164330:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1_4:43587619-43587638 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr1_4:43587640-43587659 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr1_4:43587641-43587660 | None:intergenic | 25.0% |
| !! | AGAAAAGCGTATAAATAAAG+GGG | - | chr1_4:43587751-43587770 | None:intergenic | 25.0% |
| ! | AAACTTGATGTTGCAATTTA+TGG | + | chr1_4:43588085-43588104 | Msa0164330:intron | 25.0% |
| !!! | GTGTGTTTTTATATGTTTAG+AGG | + | chr1_4:43588127-43588146 | Msa0164330:intron | 25.0% |
| ! | GATAATATATATCAGATGAG+AGG | + | chr1_4:43588302-43588321 | Msa0164330:intron | 25.0% |
| ! | AGCAACTCTCTTAAAATTTA+CGG | - | chr1_4:43588393-43588412 | None:intergenic | 25.0% |
| !!! | ATTTTAAGAGAGTTGCTATA+CGG | + | chr1_4:43588396-43588415 | Msa0164330:intron | 25.0% |
| !! | ATGTGGTATTCTCTTTTAAT+GGG | + | chr1_4:43588462-43588481 | Msa0164330:intron | 25.0% |
| !!! | ACTCTAGTTAAAAGTATCAA+GGG | - | chr1_4:43588808-43588827 | None:intergenic | 25.0% |
| !!! | TACTCTAGTTAAAAGTATCA+AGG | - | chr1_4:43588809-43588828 | None:intergenic | 25.0% |
| ! | ATTGACGAAACTTACAATTT+CGG | - | chr1_4:43588865-43588884 | None:intergenic | 25.0% |
| !!! | TGAAGTTTTGTTAATTTCAG+CGG | - | chr1_4:43588892-43588911 | None:intergenic | 25.0% |
| ! | TTAATGTTATGCAATTTCAG+GGG | - | chr1_4:43588921-43588940 | None:intergenic | 25.0% |
| ! | GATTAATGTTATGCAATTTC+AGG | - | chr1_4:43588923-43588942 | None:intergenic | 25.0% |
| ! | ACAGTTAACAGAAAAATTGA+CGG | - | chr1_4:43588958-43588977 | None:intergenic | 25.0% |
| !! | AGAACTGAATGTATGATTTT+TGG | - | chr1_4:43589068-43589087 | None:intergenic | 25.0% |
| !! | TGACAAAACCATTATTTCTT+TGG | - | chr1_4:43589158-43589177 | None:intergenic | 25.0% |
| ! | TATGAACAGAAGTTAAAGAT+GGG | - | chr1_4:43589518-43589537 | None:intergenic | 25.0% |
| ! | TATGATGTGTGAATCATAAA+AGG | + | chr1_4:43589551-43589570 | Msa0164330:intron | 25.0% |
| !!! | ATTTTTGATTGTAGATCATG+GGG | - | chr1_4:43589779-43589798 | None:intergenic | 25.0% |
| ! | AACTATTAAATCTATGGTTG+TGG | + | chr1_4:43589925-43589944 | Msa0164330:intron | 25.0% |
| !!! | AAGACTTTTTTTACACAAGT+TGG | - | chr1_4:43590049-43590068 | None:intergenic | 25.0% |
| ! | ATGTATGTTTATGTAGCTAT+TGG | - | chr1_4:43590137-43590156 | None:intergenic | 25.0% |
| ! | TGTAGTTAAAAGGAGTAAAT+AGG | - | chr1_4:43590200-43590219 | None:intergenic | 25.0% |
| ! | GCTGAGAAATTATTTATATC+TGG | - | chr1_4:43590639-43590658 | None:intergenic | 25.0% |
| ! | AAGTTAACATTTCCCTTAAA+GGG | - | chr1_4:43590800-43590819 | None:intergenic | 25.0% |
| !! | GGCTTTTATGTTAAATAGAT+GGG | - | chr1_4:43591164-43591183 | None:intergenic | 25.0% |
| !!! | AATAGGGTTTTATTTTAGGT+GGG | - | chr1_4:43591185-43591204 | None:intergenic | 25.0% |
| !!! | TAATAGGGTTTTATTTTAGG+TGG | - | chr1_4:43591186-43591205 | None:intergenic | 25.0% |
| !!! | AAAAGTCATATTTTTCAGGA+TGG | + | chr1_4:43591476-43591495 | Msa0164330:intron | 25.0% |
| ! | TCTTTCTTTCAACAATTACA+TGG | - | chr1_4:43591603-43591622 | None:intergenic | 25.0% |
| ! | ACAAAATGATGATCATAAAG+TGG | - | chr1_4:43591941-43591960 | None:intergenic | 25.0% |
| !! | ACTTTATGATCATCATTTTG+TGG | + | chr1_4:43591940-43591959 | Msa0164330:three_prime_UTR | 25.0% |
| GAAGGAAGAAGAGAAAAATA+AGG | - | chr1_4:43585335-43585354 | None:intergenic | 30.0% | |
| GAGACAAGATATATGAATGA+AGG | - | chr1_4:43585353-43585372 | None:intergenic | 30.0% | |
| ATATCTTGTCTCGCTTATAA+TGG | + | chr1_4:43585361-43585380 | Msa0164330:exon | 30.0% | |
| TATCTTGTCTCGCTTATAAT+GGG | + | chr1_4:43585362-43585381 | Msa0164330:exon | 30.0% | |
| !!! | TTACAGTCATTTTTGTGGTT+GGG | - | chr1_4:43585451-43585470 | None:intergenic | 30.0% |
| CTTTCATATAAGGATCACTT+GGG | - | chr1_4:43585840-43585859 | None:intergenic | 30.0% | |
| TCTTTCATATAAGGATCACT+TGG | - | chr1_4:43585841-43585860 | None:intergenic | 30.0% | |
| ATATGAAAGAACATTTGCAC+TGG | + | chr1_4:43585851-43585870 | Msa0164330:CDS | 30.0% | |
| ATTAAGTTAGACTCCGTAAT+TGG | + | chr1_4:43586072-43586091 | Msa0164330:intron | 30.0% | |
| TTAAGTTAGACTCCGTAATT+GGG | + | chr1_4:43586073-43586092 | Msa0164330:intron | 30.0% | |
| GGGTTATGTAATAAATGGTA+CGG | - | chr1_4:43586186-43586205 | None:intergenic | 30.0% | |
| ! | GTATGATTTGTACGAAAATG+AGG | - | chr1_4:43586207-43586226 | None:intergenic | 30.0% |
| !! | GTACTACTTGCTTTTCTAAA+AGG | - | chr1_4:43586329-43586348 | None:intergenic | 30.0% |
| !! | GGGTCAATCAAATTGTTTTA+TGG | - | chr1_4:43586390-43586409 | None:intergenic | 30.0% |
| TTAATGGCACCAAAGTTTAA+TGG | - | chr1_4:43586460-43586479 | None:intergenic | 30.0% | |
| !! | TTAAACTTTGGTGCCATTAA+TGG | + | chr1_4:43586460-43586479 | Msa0164330:intron | 30.0% |
| !! | AGATTTCTGGTTGTTATTCT+AGG | - | chr1_4:43587144-43587163 | None:intergenic | 30.0% |
| ! | GATTTTTGAATCCACAAAGT+TGG | + | chr1_4:43587366-43587385 | Msa0164330:intron | 30.0% |
| ATTAACCCATATCACACAAA+AGG | - | chr1_4:43587543-43587562 | None:intergenic | 30.0% | |
| CCAAAGTAGGTCAATTATAT+CGG | + | chr1_4:43587787-43587806 | Msa0164330:intron | 30.0% | |
| CAAAGTAGGTCAATTATATC+GGG | + | chr1_4:43587788-43587807 | Msa0164330:intron | 30.0% | |
| ATGTTTACTTCATTGGAGTA+AGG | + | chr1_4:43588152-43588171 | Msa0164330:intron | 30.0% | |
| ! | CATGTGGTATTCTCTTTTAA+TGG | + | chr1_4:43588461-43588480 | Msa0164330:intron | 30.0% |
| !! | GGGTTTTGACCATTAAAATT+TGG | - | chr1_4:43588788-43588807 | None:intergenic | 30.0% |
| TTGACGAAACTTACAATTTC+GGG | - | chr1_4:43588864-43588883 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGTTAATTTCAGCG+GGG | - | chr1_4:43588890-43588909 | None:intergenic | 30.0% |
| !!! | GAAGTTTTGTTAATTTCAGC+GGG | - | chr1_4:43588891-43588910 | None:intergenic | 30.0% |
| TTAACAGAAAAATTGACGGA+GGG | - | chr1_4:43588954-43588973 | None:intergenic | 30.0% | |
| AATCTCTAACCAGATTTGAT+GGG | - | chr1_4:43589326-43589345 | None:intergenic | 30.0% | |
| AAATTTGTGGCAGATTTGAT+GGG | - | chr1_4:43589379-43589398 | None:intergenic | 30.0% | |
| CAGATATGAACATTTGTTTG+TGG | - | chr1_4:43589419-43589438 | None:intergenic | 30.0% | |
| CACAAACAAATGTTCATATC+TGG | + | chr1_4:43589417-43589436 | Msa0164330:intron | 30.0% | |
| CTATGAACAGAAGTTAAAGA+TGG | - | chr1_4:43589519-43589538 | None:intergenic | 30.0% | |
| CATGCATATATCTTGAAACT+TGG | + | chr1_4:43589671-43589690 | Msa0164330:intron | 30.0% | |
| !! | TTGTTATTTAATTCTGTGGG+TGG | + | chr1_4:43589822-43589841 | Msa0164330:intron | 30.0% |
| ! | TGTTATTTAATTCTGTGGGT+GGG | + | chr1_4:43589823-43589842 | Msa0164330:intron | 30.0% |
| AATGGTTGTAACTTATTGCT+GGG | - | chr1_4:43589872-43589891 | None:intergenic | 30.0% | |
| TAATGGTTGTAACTTATTGC+TGG | - | chr1_4:43589873-43589892 | None:intergenic | 30.0% | |
| AATAAGTTACAACCATTACC+AGG | + | chr1_4:43589875-43589894 | Msa0164330:intron | 30.0% | |
| TAAAGTACACAAGTCTTTGA+TGG | - | chr1_4:43590002-43590021 | None:intergenic | 30.0% | |
| ACTTGTTCGTTGTAGTTAAA+AGG | - | chr1_4:43590210-43590229 | None:intergenic | 30.0% | |
| !!! | TGAATTAGTAATGTTTTGGC+AGG | - | chr1_4:43590266-43590285 | None:intergenic | 30.0% |
| GCAAAGTTCACTGTTAATAT+TGG | + | chr1_4:43590680-43590699 | Msa0164330:intron | 30.0% | |
| CTTCGATCTTATTAAAGTCT+TGG | + | chr1_4:43590718-43590737 | Msa0164330:intron | 30.0% | |
| CAATAGCTATCTTCATTTCT+TGG | + | chr1_4:43590749-43590768 | Msa0164330:intron | 30.0% | |
| AGTTAACATTTCCCTTAAAG+GGG | - | chr1_4:43590799-43590818 | None:intergenic | 30.0% | |
| CAAGTTAACATTTCCCTTAA+AGG | - | chr1_4:43590801-43590820 | None:intergenic | 30.0% | |
| ATCATTAACTTATGCCTTGA+GGG | - | chr1_4:43590826-43590845 | None:intergenic | 30.0% | |
| AATCATTAACTTATGCCTTG+AGG | - | chr1_4:43590827-43590846 | None:intergenic | 30.0% | |
| GATCTATCAAACAGTAATAG+AGG | - | chr1_4:43591021-43591040 | None:intergenic | 30.0% | |
| ! | CCGTACAACTTCTTTATTTA+GGG | - | chr1_4:43591058-43591077 | None:intergenic | 30.0% |
| CCCTAAATAAAGAAGTTGTA+CGG | + | chr1_4:43591055-43591074 | Msa0164330:intron | 30.0% | |
| ! | ACCGTACAACTTCTTTATTT+AGG | - | chr1_4:43591059-43591078 | None:intergenic | 30.0% |
| ! | GGGCTTTTATGTTAAATAGA+TGG | - | chr1_4:43591165-43591184 | None:intergenic | 30.0% |
| !! | CATATTCAAGGTATTGTTCT+AGG | - | chr1_4:43591371-43591390 | None:intergenic | 30.0% |
| CTAGAACAATACCTTGAATA+TGG | + | chr1_4:43591369-43591388 | Msa0164330:intron | 30.0% | |
| TGCATATTACACCATATTCA+AGG | - | chr1_4:43591383-43591402 | None:intergenic | 30.0% | |
| TTCCCAAAATACAACTATAG+GGG | - | chr1_4:43591637-43591656 | None:intergenic | 30.0% | |
| GTTCCCAAAATACAACTATA+GGG | - | chr1_4:43591638-43591657 | None:intergenic | 30.0% | |
| TGTTCCCAAAATACAACTAT+AGG | - | chr1_4:43591639-43591658 | None:intergenic | 30.0% | |
| !! | TATAGTTGTATTTTGGGAAC+AGG | + | chr1_4:43591638-43591657 | Msa0164330:intron | 30.0% |
| !!! | AATTGTTGCTCCTTTTTCAA+GGG | + | chr1_4:43591757-43591776 | Msa0164330:CDS | 30.0% |
| ATAAAGTGGTTTCTGATTGA+TGG | - | chr1_4:43591927-43591946 | None:intergenic | 30.0% | |
| ACTTCAGATCCACTAATTCT+TGG | + | chr1_4:43585392-43585411 | Msa0164330:CDS | 35.0% | |
| CTTCAGATCCACTAATTCTT+GGG | + | chr1_4:43585393-43585412 | Msa0164330:CDS | 35.0% | |
| !!! | TACAGTCATTTTTGTGGTTG+GGG | - | chr1_4:43585450-43585469 | None:intergenic | 35.0% |
| !!! | GTTACAGTCATTTTTGTGGT+TGG | - | chr1_4:43585452-43585471 | None:intergenic | 35.0% |
| TGTAGCCACATACTCTTTAA+CGG | + | chr1_4:43586420-43586439 | Msa0164330:intron | 35.0% | |
| !! | ACTTTGGTGCCATTAAACTT+TGG | + | chr1_4:43586448-43586467 | Msa0164330:intron | 35.0% |
| CATTAATGGCCCAGATTTAA+TGG | - | chr1_4:43586493-43586512 | None:intergenic | 35.0% | |
| AGATTGAAAGCTATGCATCT+GGG | - | chr1_4:43586541-43586560 | None:intergenic | 35.0% | |
| AGATGCATAGCTTTCAATCT+CGG | + | chr1_4:43586541-43586560 | Msa0164330:intron | 35.0% | |
| ATGTTGTAAGGCATATGAGT+CGG | - | chr1_4:43586647-43586666 | None:intergenic | 35.0% | |
| ! | TAAACTTTAAAAAGCGGGTG+CGG | - | chr1_4:43586729-43586748 | None:intergenic | 35.0% |
| !! | GGTTGTTATTCTAGGATGTT+GGG | - | chr1_4:43587136-43587155 | None:intergenic | 35.0% |
| !! | TGGTTGTTATTCTAGGATGT+TGG | - | chr1_4:43587137-43587156 | None:intergenic | 35.0% |
| TGCGCAGAAATGAAAATTAG+AGG | - | chr1_4:43587235-43587254 | None:intergenic | 35.0% | |
| AAATTGAGAGACCAACTTTG+TGG | - | chr1_4:43587380-43587399 | None:intergenic | 35.0% | |
| ! | ACAGTTCCTTTTGTGTGATA+TGG | + | chr1_4:43587534-43587553 | Msa0164330:intron | 35.0% |
| ! | CAGTTCCTTTTGTGTGATAT+GGG | + | chr1_4:43587535-43587554 | Msa0164330:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1_4:43587605-43587624 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1_4:43587774-43587793 | Msa0164330:intron | 35.0% | |
| CCGATATAATTGACCTACTT+TGG | - | chr1_4:43587790-43587809 | None:intergenic | 35.0% | |
| AGATGCTTATGTGACAACTA+AGG | - | chr1_4:43587865-43587884 | None:intergenic | 35.0% | |
| AGAGGTGATGTTTACTTCAT+TGG | + | chr1_4:43588145-43588164 | Msa0164330:intron | 35.0% | |
| TTCATTGGAGTAAGGATAGA+AGG | + | chr1_4:43588160-43588179 | Msa0164330:intron | 35.0% | |
| TCATTGGAGTAAGGATAGAA+GGG | + | chr1_4:43588161-43588180 | Msa0164330:intron | 35.0% | |
| ACGACAACTTCAATTTCATG+TGG | + | chr1_4:43588445-43588464 | Msa0164330:intron | 35.0% | |
| TGGACATCAACAACTCATAA+AGG | + | chr1_4:43588595-43588614 | Msa0164330:intron | 35.0% | |
| TGACGAAACTTACAATTTCG+GGG | - | chr1_4:43588863-43588882 | None:intergenic | 35.0% | |
| TAACAGAAAAATTGACGGAG+GGG | - | chr1_4:43588953-43588972 | None:intergenic | 35.0% | |
| GTTAACAGAAAAATTGACGG+AGG | - | chr1_4:43588955-43588974 | None:intergenic | 35.0% | |
| ACATAAGTGCAAAAGTTCAG+GGG | - | chr1_4:43589003-43589022 | None:intergenic | 35.0% | |
| CACATAAGTGCAAAAGTTCA+GGG | - | chr1_4:43589004-43589023 | None:intergenic | 35.0% | |
| !!! | TTGATGGGTTTTTGCTACTA+TGG | - | chr1_4:43589311-43589330 | None:intergenic | 35.0% |
| TAGCAAAAACCCATCAAATC+TGG | + | chr1_4:43589314-43589333 | Msa0164330:intron | 35.0% | |
| CAATCTCTAACCAGATTTGA+TGG | - | chr1_4:43589327-43589346 | None:intergenic | 35.0% | |
| CATCAAATCTGGTTAGAGAT+TGG | + | chr1_4:43589325-43589344 | Msa0164330:intron | 35.0% | |
| GAAATTTGTGGCAGATTTGA+TGG | - | chr1_4:43589380-43589399 | None:intergenic | 35.0% | |
| ! | AGTTTTCCAGACGAAATTTG+TGG | - | chr1_4:43589392-43589411 | None:intergenic | 35.0% |
| !!! | GCATTCAGATCTTTTTCAAG+AGG | - | chr1_4:43589449-43589468 | None:intergenic | 35.0% |
| ! | CTCTTCTACTTTGTCCTTTT+CGG | - | chr1_4:43589599-43589618 | None:intergenic | 35.0% |
| AAAGGACAAAGTAGAAGAGA+TGG | + | chr1_4:43589600-43589619 | Msa0164330:intron | 35.0% | |
| GTTATTTAATTCTGTGGGTG+GGG | + | chr1_4:43589824-43589843 | Msa0164330:intron | 35.0% | |
| GGTATTGTAAACTAAAGCAG+TGG | - | chr1_4:43589851-43589870 | None:intergenic | 35.0% | |
| TTAGATTTGTGACCTGGTAA+TGG | - | chr1_4:43589890-43589909 | None:intergenic | 35.0% | |
| ! | TGGTTCAATTTTCCCATGAT+GGG | + | chr1_4:43589945-43589964 | Msa0164330:intron | 35.0% |
| GAGATTGTGTCATAGCTAAA+TGG | + | chr1_4:43590422-43590441 | Msa0164330:intron | 35.0% | |
| TTTCTTAACATGTGCCCTAA+GGG | + | chr1_4:43590947-43590966 | Msa0164330:intron | 35.0% | |
| TTCCACATTTGGTAGGTTTA+TGG | + | chr1_4:43591524-43591543 | Msa0164330:intron | 35.0% | |
| ATCCATAAACCTACCAAATG+TGG | - | chr1_4:43591529-43591548 | None:intergenic | 35.0% | |
| ! | TGACCCCTATAGTTGTATTT+TGG | + | chr1_4:43591631-43591650 | Msa0164330:intron | 35.0% |
| ! | GACCCCTATAGTTGTATTTT+GGG | + | chr1_4:43591632-43591651 | Msa0164330:intron | 35.0% |
| GAAAGACCAAAGCCTAATAT+AGG | + | chr1_4:43591680-43591699 | Msa0164330:CDS | 35.0% | |
| TGGATTCCTATATTAGGCTT+TGG | - | chr1_4:43591689-43591708 | None:intergenic | 35.0% | |
| TACCTGTGGATTCCTATATT+AGG | - | chr1_4:43591695-43591714 | None:intergenic | 35.0% | |
| TGTCCTATTCAAGCAAGAAA+AGG | + | chr1_4:43591721-43591740 | Msa0164330:CDS | 35.0% | |
| GTCCTATTCAAGCAAGAAAA+GGG | + | chr1_4:43591722-43591741 | Msa0164330:CDS | 35.0% | |
| TCCTATTCAAGCAAGAAAAG+GGG | + | chr1_4:43591723-43591742 | Msa0164330:CDS | 35.0% | |
| !! | CAATTGTTGCTCCTTTTTCA+AGG | + | chr1_4:43591756-43591775 | Msa0164330:CDS | 35.0% |
| TTGAAGTGATCCCTTGAAAA+AGG | - | chr1_4:43591770-43591789 | None:intergenic | 35.0% | |
| ! | TTTTCTGCTCAAAATGACCT+TGG | + | chr1_4:43591800-43591819 | Msa0164330:CDS | 35.0% |
| TGCCTATTTCAATGCAAGAA+GGG | + | chr1_4:43591838-43591857 | Msa0164330:CDS | 35.0% | |
| ATCACTCTCCCAAGAATTAG+TGG | - | chr1_4:43585404-43585423 | None:intergenic | 40.0% | |
| CTAATTCTTGGGAGAGTGAT+AGG | + | chr1_4:43585404-43585423 | Msa0164330:CDS | 40.0% | |
| GTGGTAACTGAAGAAGGAAA+GGG | - | chr1_4:43585509-43585528 | None:intergenic | 40.0% | |
| ! | GTTGTCTCTTCTTTTTCTGC+AGG | + | chr1_4:43585789-43585808 | Msa0164330:intron | 40.0% |
| TGGTGTTCGATTCCCAATTA+CGG | - | chr1_4:43586088-43586107 | None:intergenic | 40.0% | |
| ! | TAGAGGCATATGACAGCTAA+GGG | - | chr1_4:43586229-43586248 | None:intergenic | 40.0% |
| ! | TTAGAGGCATATGACAGCTA+AGG | - | chr1_4:43586230-43586249 | None:intergenic | 40.0% |
| TGCCTCTAAATTGATCGATC+TGG | + | chr1_4:43586241-43586260 | Msa0164330:intron | 40.0% | |
| GACCAGATCGATCAATTTAG+AGG | - | chr1_4:43586246-43586265 | None:intergenic | 40.0% | |
| GTAGCCACATACTCTTTAAC+GGG | + | chr1_4:43586421-43586440 | Msa0164330:intron | 40.0% | |
| GAGATTGAAAGCTATGCATC+TGG | - | chr1_4:43586542-43586561 | None:intergenic | 40.0% | |
| TGCCTTACAACATCTAGACT+TGG | + | chr1_4:43586654-43586673 | Msa0164330:intron | 40.0% | |
| TGCCAAGTCTAGATGTTGTA+AGG | - | chr1_4:43586659-43586678 | None:intergenic | 40.0% | |
| ! | AAACTTTAAAAAGCGGGTGC+GGG | - | chr1_4:43586728-43586747 | None:intergenic | 40.0% |
| ! | AAAAATAGAGTTTTCGCGGG+TGG | + | chr1_4:43586966-43586985 | Msa0164330:intron | 40.0% |
| CCTCTAATATAGTTTGGGGA+CGG | + | chr1_4:43587051-43587070 | Msa0164330:intron | 40.0% | |
| CTCTAATATAGTTTGGGGAC+GGG | + | chr1_4:43587052-43587071 | Msa0164330:intron | 40.0% | |
| TCTAATATAGTTTGGGGACG+GGG | + | chr1_4:43587053-43587072 | Msa0164330:intron | 40.0% | |
| !! | TTATTCTAGGATGTTGGGCA+TGG | - | chr1_4:43587131-43587150 | None:intergenic | 40.0% |
| ! | AGTAGTGGGAAGTAGATTTC+TGG | - | chr1_4:43587157-43587176 | None:intergenic | 40.0% |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr1_4:43587604-43587623 | None:intergenic | 40.0% | |
| AAACCAGTGAGCCAAAATCA+TGG | + | chr1_4:43587952-43587971 | Msa0164330:intron | 40.0% | |
| !!! | AATCCATGATTTTGGCTCAC+TGG | - | chr1_4:43587958-43587977 | None:intergenic | 40.0% |
| AAACGTTTAGAGACGGCAAA+CGG | + | chr1_4:43588533-43588552 | Msa0164330:intron | 40.0% | |
| CATACAACTCATTCGTGCAA+TGG | + | chr1_4:43588728-43588747 | Msa0164330:intron | 40.0% | |
| ACGAAACTTACAATTTCGGG+GGG | - | chr1_4:43588861-43588880 | None:intergenic | 40.0% | |
| GACGAAACTTACAATTTCGG+GGG | - | chr1_4:43588862-43588881 | None:intergenic | 40.0% | |
| AACAGAAAAATTGACGGAGG+GGG | - | chr1_4:43588952-43588971 | None:intergenic | 40.0% | |
| ATAAGTGCAAAAGTTCAGGG+GGG | - | chr1_4:43589001-43589020 | None:intergenic | 40.0% | |
| CATAAGTGCAAAAGTTCAGG+GGG | - | chr1_4:43589002-43589021 | None:intergenic | 40.0% | |
| GCACATAAGTGCAAAAGTTC+AGG | - | chr1_4:43589005-43589024 | None:intergenic | 40.0% | |
| CTACTATGGCATTCTTGTCT+TGG | - | chr1_4:43589297-43589316 | None:intergenic | 40.0% | |
| AATCTGCCACAAATTTCGTC+TGG | + | chr1_4:43589383-43589402 | Msa0164330:intron | 40.0% | |
| TTCTAAACCCACAACCGAAA+AGG | + | chr1_4:43589582-43589601 | Msa0164330:intron | 40.0% | |
| ! | ACTTTGTCCTTTTCGGTTGT+GGG | - | chr1_4:43589592-43589611 | None:intergenic | 40.0% |
| ! | TACTTTGTCCTTTTCGGTTG+TGG | - | chr1_4:43589593-43589612 | None:intergenic | 40.0% |
| ! | GATTGTAGATCATGGGGTTT+TGG | - | chr1_4:43589773-43589792 | None:intergenic | 40.0% |
| AATGGCTTAGATTTGTGACC+TGG | - | chr1_4:43589896-43589915 | None:intergenic | 40.0% | |
| ! | GTGGTTCAATTTTCCCATGA+TGG | + | chr1_4:43589944-43589963 | Msa0164330:intron | 40.0% |
| !! | TTGATGGTGGAGTTTAGCAT+GGG | - | chr1_4:43589986-43590005 | None:intergenic | 40.0% |
| !! | TTTGATGGTGGAGTTTAGCA+TGG | - | chr1_4:43589987-43590006 | None:intergenic | 40.0% |
| AGTACACAAGTCTTTGATGG+TGG | - | chr1_4:43589999-43590018 | None:intergenic | 40.0% | |
| AAGTTAACACCACCCCTTTA+AGG | + | chr1_4:43590784-43590803 | Msa0164330:intron | 40.0% | |
| AGTTAACACCACCCCTTTAA+GGG | + | chr1_4:43590785-43590804 | Msa0164330:intron | 40.0% | |
| TAACATTTCCCTTAAAGGGG+TGG | - | chr1_4:43590796-43590815 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr1_4:43590809-43590828 | Msa0164330:intron | 40.0% |
| GTTTCTTAACATGTGCCCTA+AGG | + | chr1_4:43590946-43590965 | Msa0164330:intron | 40.0% | |
| AATGTGGAATCTGTTGTTCC+TGG | - | chr1_4:43591513-43591532 | None:intergenic | 40.0% | |
| GGAACAACAGATTCCACATT+TGG | + | chr1_4:43591513-43591532 | Msa0164330:CDS | 40.0% | |
| CAACAGATTCCACATTTGGT+AGG | + | chr1_4:43591517-43591536 | Msa0164330:intron | 40.0% | |
| AGCCTAATATAGGAATCCAC+AGG | + | chr1_4:43591690-43591709 | Msa0164330:CDS | 40.0% | |
| ATAGGACAAACACATACCTG+TGG | - | chr1_4:43591709-43591728 | None:intergenic | 40.0% | |
| ! | TCCCCTTTTCTTGCTTGAAT+AGG | - | chr1_4:43591727-43591746 | None:intergenic | 40.0% |
| TATTCAAGCAAGAAAAGGGG+AGG | + | chr1_4:43591726-43591745 | Msa0164330:CDS | 40.0% | |
| CTGCCTATTTCAATGCAAGA+AGG | + | chr1_4:43591837-43591856 | Msa0164330:CDS | 40.0% | |
| TGCCCTTCTTGCATTGAAAT+AGG | - | chr1_4:43591843-43591862 | None:intergenic | 40.0% | |
| TTTCAATGCAAGAAGGGCAA+CGG | + | chr1_4:43591844-43591863 | Msa0164330:CDS | 40.0% | |
| GCTAGCATCAACATCAACAT+AGG | - | chr1_4:43592077-43592096 | None:intergenic | 40.0% | |
| ATTATTTATTCCCTCCGTCC+CGG | + | chr1_4:43592170-43592189 | Msa0164330:three_prime_UTR | 40.0% | |
| GGTGGTAACTGAAGAAGGAA+AGG | - | chr1_4:43585510-43585529 | None:intergenic | 45.0% | |
| !! | AATCTCAATCCTTGGCTTGG+TGG | - | chr1_4:43585528-43585547 | None:intergenic | 45.0% |
| ACCAAGCCAAGGATTGAGAT+TGG | + | chr1_4:43585527-43585546 | Msa0164330:CDS | 45.0% | |
| TCCAATCTCAATCCTTGGCT+TGG | - | chr1_4:43585531-43585550 | None:intergenic | 45.0% | |
| AAGCCAAGGATTGAGATTGG+AGG | + | chr1_4:43585530-43585549 | Msa0164330:CDS | 45.0% | |
| TCTCCTCCAATCTCAATCCT+TGG | - | chr1_4:43585536-43585555 | None:intergenic | 45.0% | |
| AAGGATTGAGATTGGAGGAG+AGG | + | chr1_4:43585535-43585554 | Msa0164330:CDS | 45.0% | |
| ATATAAGGATCACTTGGGCC+AGG | - | chr1_4:43585835-43585854 | None:intergenic | 45.0% | |
| ATGTGGCTACACAAGACGTA+CGG | - | chr1_4:43586411-43586430 | None:intergenic | 45.0% | |
| ! | GCTACCCGTTAAAGAGTATG+TGG | - | chr1_4:43586428-43586447 | None:intergenic | 45.0% |
| ! | CTCTTTAACGGGTAGCACTT+TGG | + | chr1_4:43586432-43586451 | Msa0164330:intron | 45.0% |
| !! | TAATGGCACGGTGCCATTAA+TGG | - | chr1_4:43586476-43586495 | None:intergenic | 45.0% |
| ATGGCCCAGATTTAATGGCA+CGG | - | chr1_4:43586488-43586507 | None:intergenic | 45.0% | |
| CGGCGTTCTATAAGATCGAA+CGG | + | chr1_4:43586561-43586580 | Msa0164330:intron | 45.0% | |
| ! | AACTTTAAAAAGCGGGTGCG+GGG | - | chr1_4:43586727-43586746 | None:intergenic | 45.0% |
| CCGTCCCCAAACTATATTAG+AGG | - | chr1_4:43587054-43587073 | None:intergenic | 45.0% | |
| TCTACTTCCCACTACTCACA+TGG | + | chr1_4:43587161-43587180 | Msa0164330:intron | 45.0% | |
| GTAGCTACCATGTGAGTAGT+GGG | - | chr1_4:43587171-43587190 | None:intergenic | 45.0% | |
| TGTAGCTACCATGTGAGTAG+TGG | - | chr1_4:43587172-43587191 | None:intergenic | 45.0% | |
| CTGCAACACATGGCAATCAA+TGG | + | chr1_4:43588575-43588594 | Msa0164330:intron | 45.0% | |
| ! | CTCATAAAGGTACACTGACG+AGG | + | chr1_4:43588608-43588627 | Msa0164330:intron | 45.0% |
| AAACTTACAATTTCGGGGGG+GGG | - | chr1_4:43588858-43588877 | None:intergenic | 45.0% | |
| GAAACTTACAATTTCGGGGG+GGG | - | chr1_4:43588859-43588878 | None:intergenic | 45.0% | |
| CGAAACTTACAATTTCGGGG+GGG | - | chr1_4:43588860-43588879 | None:intergenic | 45.0% | |
| TAAGTGCAAAAGTTCAGGGG+GGG | - | chr1_4:43589000-43589019 | None:intergenic | 45.0% | |
| !!! | GTGGCAGATTTGATGGGTTT+TGG | - | chr1_4:43589373-43589392 | None:intergenic | 45.0% |
| GGGAAGTTCTTTCCCATCAT+GGG | - | chr1_4:43589960-43589979 | None:intergenic | 45.0% | |
| AGGGAAGTTCTTTCCCATCA+TGG | - | chr1_4:43589961-43589980 | None:intergenic | 45.0% | |
| GTGGAGTTTAGCATGGGAAA+GGG | - | chr1_4:43589980-43589999 | None:intergenic | 45.0% | |
| ! | AAAGGGGTGGTGTTAACTTG+TGG | - | chr1_4:43590783-43590802 | None:intergenic | 45.0% |
| !! | GGTGTTAACTTGTGCCCTTA+GGG | - | chr1_4:43590964-43590983 | None:intergenic | 45.0% |
| !! | TGGTGTTAACTTGTGCCCTT+AGG | - | chr1_4:43590965-43590984 | None:intergenic | 45.0% |
| TGAAATAGGCAGCAGCAACA+GGG | - | chr1_4:43591829-43591848 | None:intergenic | 45.0% | |
| TTGAAATAGGCAGCAGCAAC+AGG | - | chr1_4:43591830-43591849 | None:intergenic | 45.0% | |
| !!! | AAAAATATAACTTTTTTTTA+GGG | - | chr1_4:43585756-43585775 | None:intergenic | 5.0% |
| !! | ATAAATATATTAAAATATGT+TGG | - | chr1_4:43586787-43586806 | None:intergenic | 5.0% |
| !! | AATAAATATAAATATATATG+TGG | - | chr1_4:43587424-43587443 | None:intergenic | 5.0% |
| !! | AATAAATAATATTAAAGATA+GGG | - | chr1_4:43590988-43591007 | None:intergenic | 5.0% |
| !! | TTAATATTATTTATTCATAA+AGG | + | chr1_4:43590993-43591012 | Msa0164330:intron | 5.0% |
| !! | GGCTTGGTGGTAACTGAAGA+AGG | - | chr1_4:43585515-43585534 | None:intergenic | 50.0% |
| CTTCAGTTACCACCAAGCCA+AGG | + | chr1_4:43585516-43585535 | Msa0164330:CDS | 50.0% | |
| AGATTGGAGGAGAGGACATG+AGG | + | chr1_4:43585543-43585562 | Msa0164330:CDS | 50.0% | |
| CATGAGGTCCCTCTTTACAC+TGG | + | chr1_4:43585559-43585578 | Msa0164330:CDS | 50.0% | |
| TCTGCAGGTCATGATAGACC+CGG | + | chr1_4:43585804-43585823 | Msa0164330:intron | 50.0% | |
| ATGATAGACCCGGATGTTCC+TGG | + | chr1_4:43585814-43585833 | Msa0164330:CDS | 50.0% | |
| TGTGGCTACACAAGACGTAC+GGG | - | chr1_4:43586410-43586429 | None:intergenic | 50.0% | |
| ! | TGGCACCGTGCCATTAAATC+TGG | + | chr1_4:43586480-43586499 | Msa0164330:intron | 50.0% |
| ! | GGCACCGTGCCATTAAATCT+GGG | + | chr1_4:43586481-43586500 | Msa0164330:intron | 50.0% |
| ! | AATAGAGTTTTCGCGGGTGG+AGG | + | chr1_4:43586969-43586988 | Msa0164330:intron | 50.0% |
| CGGGGACAAGTACATAGAAG+CGG | + | chr1_4:43587071-43587090 | Msa0164330:intron | 50.0% | |
| GGGGACAAGTACATAGAAGC+GGG | + | chr1_4:43587072-43587091 | Msa0164330:intron | 50.0% | |
| GGGACAAGTACATAGAAGCG+GGG | + | chr1_4:43587073-43587092 | Msa0164330:intron | 50.0% | |
| TAGGATGTTGGGCATGGCAA+CGG | - | chr1_4:43587125-43587144 | None:intergenic | 50.0% | |
| AATTAGTACTCCCTCCGTCC+CGG | + | chr1_4:43587583-43587602 | Msa0164330:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr1_4:43587600-43587619 | None:intergenic | 50.0% | |
| ! | TGCCTGTTTGCTGCAACACA+TGG | + | chr1_4:43588565-43588584 | Msa0164330:intron | 50.0% |
| TGCCATGTGTTGCAGCAAAC+AGG | - | chr1_4:43588570-43588589 | None:intergenic | 50.0% | |
| AACTTACAATTTCGGGGGGG+GGG | - | chr1_4:43588857-43588876 | None:intergenic | 50.0% | |
| GGTGGAGTTTAGCATGGGAA+AGG | - | chr1_4:43589981-43590000 | None:intergenic | 50.0% | |
| AGGATGGTGACAGACATTCC+AGG | + | chr1_4:43591492-43591511 | Msa0164330:intron | 50.0% | |
| TCTACTTCCTAGCGCCTTCT+AGG | - | chr1_4:43591872-43591891 | None:intergenic | 50.0% | |
| !! | AGAAGGCGCTAGGAAGTAGA+AGG | + | chr1_4:43591872-43591891 | Msa0164330:exon | 50.0% |
| !! | GAAGGCGCTAGGAAGTAGAA+GGG | + | chr1_4:43591873-43591892 | Msa0164330:exon | 50.0% |
| TGCTGCTAGCTAGGGCTATA+TGG | + | chr1_4:43591901-43591920 | Msa0164330:three_prime_UTR | 50.0% | |
| TCACTTGGGCCAGGAACATC+CGG | - | chr1_4:43585826-43585845 | None:intergenic | 55.0% | |
| TTAAAAAGCGGGTGCGGGGT+GGG | - | chr1_4:43586723-43586742 | None:intergenic | 55.0% | |
| TTTAAAAAGCGGGTGCGGGG+TGG | - | chr1_4:43586724-43586743 | None:intergenic | 55.0% | |
| AGGATGTTGGGCATGGCAAC+GGG | - | chr1_4:43587124-43587143 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr1_4:43587596-43587615 | None:intergenic | 55.0% | |
| ACTTACAATTTCGGGGGGGG+GGG | - | chr1_4:43588856-43588875 | None:intergenic | 55.0% | |
| ! | AGGGAAACGTGCTGCTAGCT+AGG | + | chr1_4:43591892-43591911 | Msa0164330:three_prime_UTR | 55.0% |
| ! | GGGAAACGTGCTGCTAGCTA+GGG | + | chr1_4:43591893-43591912 | Msa0164330:three_prime_UTR | 55.0% |
| ATCGGTTATTCCGGGACGGA+GGG | - | chr1_4:43592183-43592202 | None:intergenic | 55.0% | |
| CACTTGGGCCAGGAACATCC+GGG | - | chr1_4:43585825-43585844 | None:intergenic | 60.0% | |
| ! | AGTTTTCGCGGGTGGAGGCA+GGG | + | chr1_4:43586974-43586993 | Msa0164330:intron | 60.0% |
| ACCGGGAGACCTGTTCCCAT+TGG | + | chr1_4:43587002-43587021 | Msa0164330:intron | 60.0% | |
| CCCAATGGGAACAGGTCTCC+CGG | - | chr1_4:43587006-43587025 | None:intergenic | 60.0% | |
| CCGGGAGACCTGTTCCCATT+GGG | + | chr1_4:43587003-43587022 | Msa0164330:intron | 60.0% | |
| CGGGAGACCTGTTCCCATTG+GGG | + | chr1_4:43587004-43587023 | Msa0164330:intron | 60.0% | |
| GGGAGACCTGTTCCCATTGG+GGG | + | chr1_4:43587005-43587024 | Msa0164330:intron | 60.0% | |
| AGACCTGTTCCCATTGGGGG+CGG | + | chr1_4:43587008-43587027 | Msa0164330:intron | 60.0% | |
| GGATGTTGGGCATGGCAACG+GGG | - | chr1_4:43587123-43587142 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr1_4:43587597-43587616 | None:intergenic | 60.0% | |
| TTACAATTTCGGGGGGGGGG+GGG | - | chr1_4:43588854-43588873 | None:intergenic | 60.0% | |
| CTTACAATTTCGGGGGGGGG+GGG | - | chr1_4:43588855-43588874 | None:intergenic | 60.0% | |
| CAGCAGCAACAGGGACACCA+AGG | - | chr1_4:43591820-43591839 | None:intergenic | 60.0% | |
| GAAGGGCAACGGCTCCTAGA+AGG | + | chr1_4:43591855-43591874 | Msa0164330:CDS | 60.0% | |
| !! | AACGGCTCCTAGAAGGCGCT+AGG | + | chr1_4:43591862-43591881 | Msa0164330:CDS | 60.0% |
| GATCGGTTATTCCGGGACGG+AGG | - | chr1_4:43592184-43592203 | None:intergenic | 60.0% | |
| ! | GAGTTTTCGCGGGTGGAGGC+AGG | + | chr1_4:43586973-43586992 | Msa0164330:intron | 65.0% |
| GGGAACAGGTCTCCCGGTCT+CGG | - | chr1_4:43587000-43587019 | None:intergenic | 65.0% | |
| GACCTGTTCCCATTGGGGGC+GGG | + | chr1_4:43587009-43587028 | Msa0164330:intron | 65.0% | |
| ACCTGTTCCCATTGGGGGCG+GGG | + | chr1_4:43587010-43587029 | Msa0164330:intron | 65.0% | |
| CACTCAACCCCGCCCCCAAT+GGG | - | chr1_4:43587020-43587039 | None:intergenic | 65.0% | |
| ACACTCAACCCCGCCCCCAA+TGG | - | chr1_4:43587021-43587040 | None:intergenic | 65.0% | |
| TGTTGGGCATGGCAACGGGG+CGG | - | chr1_4:43587120-43587139 | None:intergenic | 65.0% | |
| TACAATTTCGGGGGGGGGGG+GGG | - | chr1_4:43588853-43588872 | None:intergenic | 65.0% | |
| !! | TGCGGGGCGGGTTTTGTGGC+GGG | - | chr1_4:43586694-43586713 | None:intergenic | 70.0% |
| !! | GTGCGGGGCGGGTTTTGTGG+CGG | - | chr1_4:43586695-43586714 | None:intergenic | 70.0% |
| !! | TGGGTGCGGGGCGGGTTTTG+TGG | - | chr1_4:43586698-43586717 | None:intergenic | 70.0% |
| ACCCCGCCCCCAATGGGAAC+AGG | - | chr1_4:43587014-43587033 | None:intergenic | 70.0% | |
| TTGGGCATGGCAACGGGGCG+GGG | - | chr1_4:43587118-43587137 | None:intergenic | 70.0% | |
| GTTGGGCATGGCAACGGGGC+GGG | - | chr1_4:43587119-43587138 | None:intergenic | 70.0% | |
| ACAATTTCGGGGGGGGGGGG+GGG | - | chr1_4:43588852-43588871 | None:intergenic | 70.0% | |
| !! | GGCGGGTTTTGTGGCGGGGG+CGG | - | chr1_4:43586689-43586708 | None:intergenic | 75.0% |
| !! | CGGGGCGGGTTTTGTGGCGG+GGG | - | chr1_4:43586692-43586711 | None:intergenic | 75.0% |
| !! | GCGGGGCGGGTTTTGTGGCG+GGG | - | chr1_4:43586693-43586712 | None:intergenic | 75.0% |
| GGTGGAGGCAGGGCCGAGAC+CGG | + | chr1_4:43586984-43587003 | Msa0164330:intron | 75.0% | |
| GTGGAGGCAGGGCCGAGACC+GGG | + | chr1_4:43586985-43587004 | Msa0164330:intron | 75.0% | |
| AATTTCGGGGGGGGGGGGGG+GGG | - | chr1_4:43588850-43588869 | None:intergenic | 75.0% | |
| CAATTTCGGGGGGGGGGGGG+GGG | - | chr1_4:43588851-43588870 | None:intergenic | 75.0% | |
| ! | TGCGGGGTGGGCGTGGGTGC+GGG | - | chr1_4:43586711-43586730 | None:intergenic | 80.0% |
| ! | GTGCGGGGTGGGCGTGGGTG+CGG | - | chr1_4:43586712-43586731 | None:intergenic | 80.0% |
| ! | AGCGGGTGCGGGGTGGGCGT+GGG | - | chr1_4:43586717-43586736 | None:intergenic | 80.0% |
| ! | AAGCGGGTGCGGGGTGGGCG+TGG | - | chr1_4:43586718-43586737 | None:intergenic | 80.0% |
| ! | CATGGCAACGGGGCGGGGCG+GGG | - | chr1_4:43587113-43587132 | None:intergenic | 80.0% |
| ! | GCATGGCAACGGGGCGGGGC+GGG | - | chr1_4:43587114-43587133 | None:intergenic | 80.0% |
| ! | GGCATGGCAACGGGGCGGGG+CGG | - | chr1_4:43587115-43587134 | None:intergenic | 80.0% |
| ! | ATTTCGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588849-43588868 | None:intergenic | 80.0% |
| ! | GGTGGGCGTGGGTGCGGGGC+GGG | - | chr1_4:43586706-43586725 | None:intergenic | 85.0% |
| ! | GGGTGGGCGTGGGTGCGGGG+CGG | - | chr1_4:43586707-43586726 | None:intergenic | 85.0% |
| ! | GCGGGGTGGGCGTGGGTGCG+GGG | - | chr1_4:43586710-43586729 | None:intergenic | 85.0% |
| ! | CAACGGGGCGGGGCGGGGAC+GGG | - | chr1_4:43587108-43587127 | None:intergenic | 85.0% |
| ! | GCAACGGGGCGGGGCGGGGA+CGG | - | chr1_4:43587109-43587128 | None:intergenic | 85.0% |
| ! | TTTCGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588848-43588867 | None:intergenic | 85.0% |
| ! | TTCGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588847-43588866 | None:intergenic | 90.0% |
| ! | TCGGGGGGGGGGGGGGGGGG+GGG | - | chr1_4:43588846-43588865 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 43585291 | 43592204 | 43585291 | ID=Msa0164330;Name=Msa0164330 |
| chr1_4 | mRNA | 43585291 | 43592204 | 43585291 | ID=Msa0164330-mRNA-1;Parent=Msa0164330;Name=Msa0164330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=89|1|1|1|1|1|4|321|175 |
| chr1_4 | exon | 43585291 | 43585580 | 43585291 | ID=Msa0164330-mRNA-1:exon:12497;Parent=Msa0164330-mRNA-1 |
| chr1_4 | exon | 43585811 | 43585872 | 43585811 | ID=Msa0164330-mRNA-1:exon:12498;Parent=Msa0164330-mRNA-1 |
| chr1_4 | exon | 43591494 | 43591534 | 43591494 | ID=Msa0164330-mRNA-1:exon:12499;Parent=Msa0164330-mRNA-1 |
| chr1_4 | exon | 43591660 | 43592204 | 43591660 | ID=Msa0164330-mRNA-1:exon:12500;Parent=Msa0164330-mRNA-1 |
| chr1_4 | five_prime_UTR | 43585291 | 43585379 | 43585291 | ID=Msa0164330-mRNA-1:five_prime_utr;Parent=Msa0164330-mRNA-1 |
| chr1_4 | CDS | 43585380 | 43585580 | 43585380 | ID=Msa0164330-mRNA-1:cds;Parent=Msa0164330-mRNA-1 |
| chr1_4 | CDS | 43585811 | 43585872 | 43585811 | ID=Msa0164330-mRNA-1:cds;Parent=Msa0164330-mRNA-1 |
| chr1_4 | CDS | 43591494 | 43591534 | 43591494 | ID=Msa0164330-mRNA-1:cds;Parent=Msa0164330-mRNA-1 |
| chr1_4 | CDS | 43591660 | 43591883 | 43591660 | ID=Msa0164330-mRNA-1:cds;Parent=Msa0164330-mRNA-1 |
| chr1_4 | three_prime_UTR | 43591884 | 43592204 | 43591884 | ID=Msa0164330-mRNA-1:three_prime_utr;Parent=Msa0164330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
