Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851390 | AES98251.1 | 59.828 | 931 | 163 | 16 | 1 | 768 | 1 | 883 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851390 | sp|Q8L7S0|ULP2B_ARATH | 51.680 | 387 | 161 | 6 | 159 | 524 | 373 | 754 | 1.93e-111 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851390 | G7KBL6 | 59.828 | 931 | 163 | 16 | 1 | 768 | 1 | 883 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0851390 | 0.807710 | 4.426165e-50 | -8.615850e-47 |
| Msa0016580 | Msa0851390 | 0.820654 | 6.117402e-53 | -8.615850e-47 |
| Msa0110270 | Msa0851390 | 0.803067 | 4.159598e-49 | -8.615850e-47 |
| Msa0604350 | Msa0851390 | 0.808284 | 3.340255e-50 | -8.615850e-47 |
| Msa0636170 | Msa0851390 | 0.802169 | 6.373348e-49 | -8.615850e-47 |
| Msa0729800 | Msa0851390 | 0.821641 | 3.624823e-53 | -8.615850e-47 |
| Msa0732540 | Msa0851390 | 0.820538 | 6.507337e-53 | -8.615850e-47 |
| Msa0732710 | Msa0851390 | 0.889914 | 1.580636e-73 | -8.615850e-47 |
| Msa0733290 | Msa0851390 | 0.831095 | 2.027541e-55 | -8.615850e-47 |
| Msa0743810 | Msa0851390 | 0.817428 | 3.314806e-52 | -8.615850e-47 |
| Msa0745060 | Msa0851390 | 0.818163 | 2.262221e-52 | -8.615850e-47 |
| Msa0775300 | Msa0851390 | 0.901789 | 1.876633e-78 | -8.615850e-47 |
| Msa0777870 | Msa0851390 | 0.801924 | 7.156868e-49 | -8.615850e-47 |
| Msa0784300 | Msa0851390 | 0.809206 | 2.121370e-50 | -8.615850e-47 |
| Msa0811270 | Msa0851390 | 0.887974 | 8.898123e-73 | -8.615850e-47 |
| Msa0825860 | Msa0851390 | 0.806704 | 7.227829e-50 | -8.615850e-47 |
| Msa0200000 | Msa0851390 | 0.812682 | 3.748970e-51 | -8.615850e-47 |
| Msa0227480 | Msa0851390 | 0.803073 | 4.148105e-49 | -8.615850e-47 |
| Msa0435230 | Msa0851390 | 0.824959 | 6.082848e-54 | -8.615850e-47 |
| Msa0450000 | Msa0851390 | 0.802735 | 4.872525e-49 | -8.615850e-47 |
| Msa0452900 | Msa0851390 | 0.807355 | 5.264933e-50 | -8.615850e-47 |
| Msa0267000 | Msa0851390 | 0.816487 | 5.390939e-52 | -8.615850e-47 |
| Msa0267010 | Msa0851390 | 0.823586 | 1.278890e-53 | -8.615850e-47 |
| Msa0846350 | Msa0851390 | 0.805759 | 1.142854e-49 | -8.615850e-47 |
| Msa0851390 | Msa0888370 | 0.811609 | 6.426969e-51 | -8.615850e-47 |
| Msa0851390 | Msa0899450 | 0.806169 | 9.371320e-50 | -8.615850e-47 |
| Msa0851390 | Msa1016280 | 0.811571 | 6.549739e-51 | -8.615850e-47 |
| Msa0851390 | Msa1025360 | 0.807731 | 4.379594e-50 | -8.615850e-47 |
| Msa0851390 | Msa1044840 | 0.813074 | 3.077443e-51 | -8.615850e-47 |
| Msa0851390 | Msa1092990 | 0.828309 | 9.655432e-55 | -8.615850e-47 |
| Msa0851390 | Msa1100980 | 0.815498 | 8.966609e-52 | -8.615850e-47 |
| Msa0851390 | Msa1146110 | 0.801302 | 9.602227e-49 | -8.615850e-47 |
| Msa0851390 | Msa1187940 | 0.800494 | 1.403962e-48 | -8.615850e-47 |
| Msa0851390 | Msa1187950 | 0.810373 | 1.190715e-50 | -8.615850e-47 |
| Msa0851390 | Msa1269670 | 0.809026 | 2.318780e-50 | -8.615850e-47 |
| Msa0851390 | Msa1270230 | 0.818794 | 1.627214e-52 | -8.615850e-47 |
| Msa0851390 | Msa1270240 | 0.821024 | 5.028944e-53 | -8.615850e-47 |
| Msa0851390 | Msa1270270 | 0.810184 | 1.307610e-50 | -8.615850e-47 |
| Msa0851390 | Msa1283330 | 0.842416 | 2.620712e-58 | -8.615850e-47 |
| Msa0851390 | Msa1287810 | 0.801464 | 8.896090e-49 | -8.615850e-47 |
| Msa0851390 | Msa1340590 | 0.817319 | 3.508076e-52 | -8.615850e-47 |
| Msa0851390 | Msa1397580 | 0.815938 | 7.154555e-52 | -8.615850e-47 |
| Msa0851390 | Msa1408780 | 0.812816 | 3.503951e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851390 | MtrunA17_Chr3g0132991 | 61.067 | 375 | 128 | 7 | 144 | 504 | 359 | 729 | 1.20e-137 | 431 |
| Msa0851390 | MtrunA17_Chr5g0427421 | 44.643 | 504 | 181 | 15 | 287 | 768 | 1 | 428 | 5.93e-101 | 318 |
| Msa0851390 | MtrunA17_Chr2g0279601 | 55.709 | 289 | 123 | 3 | 134 | 420 | 353 | 638 | 7.25e-98 | 325 |
| Msa0851390 | MtrunA17_Chr5g0427691 | 95.506 | 89 | 4 | 0 | 305 | 393 | 1 | 89 | 2.02e-54 | 182 |
| Msa0851390 | MtrunA17_Chr5g0427681 | 92.553 | 94 | 7 | 0 | 675 | 768 | 1 | 94 | 9.35e-54 | 180 |
| Msa0851390 | MtrunA17_Chr8g0365341 | 30.530 | 321 | 182 | 12 | 169 | 474 | 299 | 593 | 2.14e-35 | 143 |
| Msa0851390 | MtrunA17_Chr4g0067411 | 26.000 | 350 | 208 | 16 | 43 | 382 | 161 | 469 | 3.88e-17 | 85.1 |
| Msa0851390 | MtrunA17_Chr2g0295891 | 27.358 | 212 | 115 | 10 | 180 | 382 | 261 | 442 | 5.81e-17 | 84.3 |
| Msa0851390 | MtrunA17_Chr3g0116361 | 26.471 | 204 | 126 | 7 | 196 | 398 | 91 | 271 | 1.75e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851390 | AT1G09730.2 | 51.680 | 387 | 161 | 6 | 159 | 524 | 373 | 754 | 1.96e-112 | 363 |
| Msa0851390 | AT1G09730.1 | 51.680 | 387 | 161 | 6 | 159 | 524 | 405 | 786 | 3.76e-112 | 363 |
| Msa0851390 | AT4G33620.1 | 52.809 | 267 | 122 | 3 | 156 | 421 | 281 | 544 | 3.60e-85 | 286 |
| Msa0851390 | AT1G60220.1 | 31.660 | 259 | 152 | 9 | 170 | 417 | 332 | 576 | 2.31e-32 | 133 |
| Msa0851390 | AT1G10570.3 | 33.840 | 263 | 143 | 10 | 170 | 417 | 186 | 432 | 9.04e-32 | 129 |
| Msa0851390 | AT1G10570.1 | 33.840 | 263 | 143 | 10 | 170 | 417 | 317 | 563 | 5.62e-31 | 129 |
| Msa0851390 | AT1G10570.2 | 33.840 | 263 | 143 | 10 | 170 | 417 | 316 | 562 | 6.44e-31 | 129 |
| Msa0851390 | AT4G15880.1 | 29.474 | 190 | 100 | 8 | 190 | 373 | 298 | 459 | 2.23e-20 | 95.9 |
| Msa0851390 | AT4G00690.1 | 26.190 | 210 | 120 | 9 | 180 | 382 | 139 | 320 | 2.91e-15 | 78.6 |
Find 146 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCCTCCTTCTAGGGTTT+TGG | 0.193745 | 5_4:-41681310 | Msa0851390:CDS |
| CATTTCAACATGTTCGTAAA+TGG | 0.204655 | 5_4:-41678565 | Msa0851390:CDS |
| CTTTCGAAAGCTGGCTGATA+TGG | 0.231272 | 5_4:-41678624 | Msa0851390:CDS |
| ATCTTACAATACTTGTAATA+TGG | 0.240983 | 5_4:-41677142 | Msa0851390:CDS |
| GGCGAAGTGGTTAATATTAA+TGG | 0.242841 | 5_4:-41678369 | Msa0851390:intron |
| TGAACCAGTTTCCTCCTTCT+AGG | 0.272634 | 5_4:-41681317 | Msa0851390:CDS |
| AAATGTATTCCCTCGTAATA+TGG | 0.279291 | 5_4:-41679693 | Msa0851390:CDS |
| GGCATAAGCCGCCTCTTCTT+TGG | 0.294099 | 5_4:+41676295 | None:intergenic |
| AGTTGGTGGTAACTTCAATT+TGG | 0.294760 | 5_4:-41680011 | Msa0851390:CDS |
| ACAGCATCTGGATCCCCTTT+TGG | 0.297980 | 5_4:+41679467 | None:intergenic |
| TCCCATGAGTTTCTCAGTTT+CGG | 0.301177 | 5_4:-41681246 | Msa0851390:intron |
| GTGTCATTGATGTATGTATT+TGG | 0.314227 | 5_4:+41679410 | None:intergenic |
| TTGCAGGAGTCTCTCACTTT+TGG | 0.319621 | 5_4:-41680950 | Msa0851390:intron |
| TACTTGTAATATGGTTCTTA+AGG | 0.339876 | 5_4:-41677133 | Msa0851390:CDS |
| ACTTACAAAGTTGGAACAAT+TGG | 0.340942 | 5_4:+41677544 | None:intergenic |
| TGGCATTAATTCATCCAGTT+TGG | 0.343326 | 5_4:-41679732 | Msa0851390:CDS |
| CACAAACTTGTCTATCCAAA+AGG | 0.356318 | 5_4:-41679482 | Msa0851390:CDS |
| GTTTGCAAATTATCAGTTGC+AGG | 0.359014 | 5_4:-41680966 | Msa0851390:CDS |
| TAGAGTTGGTGTCCCTTGAT+AGG | 0.376140 | 5_4:+41676420 | None:intergenic |
| GAGGCATCGACTTCCCATTC+TGG | 0.377856 | 5_4:-41677186 | Msa0851390:CDS |
| GCAGATTTGCCGTCACAATC+AGG | 0.387491 | 5_4:+41678587 | None:intergenic |
| TGCAATATCAGACTCCAAAC+TGG | 0.388848 | 5_4:+41679718 | None:intergenic |
| TTACTTAGCGTAACAGCATC+TGG | 0.392707 | 5_4:+41679455 | None:intergenic |
| TAAGCAAGACATACCTCAAC+GGG | 0.393152 | 5_4:+41678005 | None:intergenic |
| CTCAGAGGGTTGAAATCAAA+TGG | 0.405785 | 5_4:+41677572 | None:intergenic |
| ATTTGAAGAGGCAATATCAT+TGG | 0.408710 | 5_4:+41681275 | None:intergenic |
| ACAGTTATTTGTCTGAAGAA+TGG | 0.412320 | 5_4:-41678094 | Msa0851390:intron |
| CCGTACGTTAATATTTGAAC+TGG | 0.421646 | 5_4:-41677322 | Msa0851390:CDS |
| TCTATCAAGGGACATCATAA+TGG | 0.422280 | 5_4:-41678218 | Msa0851390:CDS |
| TGCTGGTTATCACCATCGTC+AGG | 0.422984 | 5_4:+41677267 | None:intergenic |
| CAGAATATATTGACAACAAC+AGG | 0.426234 | 5_4:-41677239 | Msa0851390:CDS |
| GAGAGGAAGAATGATACATA+TGG | 0.426271 | 5_4:-41678068 | Msa0851390:CDS |
| TTCTATTCCCTGGCCAGAAT+GGG | 0.426921 | 5_4:+41677173 | None:intergenic |
| GAACCAGTTTCCTCCTTCTA+GGG | 0.435655 | 5_4:-41681316 | Msa0851390:CDS |
| TGAGTACTGGCAACAAGAAT+TGG | 0.437010 | 5_4:-41676456 | Msa0851390:CDS |
| ACTACCATGTATATTGCATA+TGG | 0.439313 | 5_4:-41678243 | Msa0851390:CDS |
| AAACCCTAGAAGGAGGAAAC+TGG | 0.440339 | 5_4:+41681313 | None:intergenic |
| CTTCAATTTGGAGACCGATC+TGG | 0.445381 | 5_4:-41679999 | Msa0851390:CDS |
| AGAGATTCCAAAACCCTAGA+AGG | 0.447367 | 5_4:+41681303 | None:intergenic |
| TTGTTCGCTGGTCAAAAGAT+TGG | 0.452884 | 5_4:+41676686 | None:intergenic |
| TTGTTCGCTGGTCAAAAGAT+TGG | 0.452884 | 5_4:+41676938 | None:intergenic |
| GAAGTTCCCGATGCTGCTCT+TGG | 0.453192 | 5_4:+41677099 | None:intergenic |
| GACGAGGTCATTGATGTTGA+TGG | 0.454665 | 5_4:-41680034 | Msa0851390:CDS |
| TTTCTATTCCCTGGCCAGAA+TGG | 0.454940 | 5_4:+41677172 | None:intergenic |
| ATTGCATATGGATTCTATCA+AGG | 0.462706 | 5_4:-41678231 | Msa0851390:CDS |
| ACAAACTTGTCTATCCAAAA+GGG | 0.462924 | 5_4:-41679481 | Msa0851390:CDS |
| TTAATAGTGATTTGTTATCC+TGG | 0.465013 | 5_4:-41678390 | Msa0851390:CDS |
| GCCATGTTGGCAGACATCAC+TGG | 0.466901 | 5_4:-41678416 | Msa0851390:intron |
| GTTACTTACTTGAAGTTCAC+AGG | 0.468600 | 5_4:+41678500 | None:intergenic |
| ATCGACTTCCCATTCTGGCC+AGG | 0.472305 | 5_4:-41677181 | Msa0851390:CDS |
| ATGATCGTTGGTCAAAAGAT+TGG | 0.477039 | 5_4:+41676560 | None:intergenic |
| GCCTCCTTCGGTGGAAGTCA+TGG | 0.478566 | 5_4:-41676275 | Msa0851390:CDS |
| GGATAGACAAGTTTGTGAAA+AGG | 0.479008 | 5_4:+41679488 | None:intergenic |
| ATGGAAACATTTCTATTCCC+TGG | 0.483194 | 5_4:+41677163 | None:intergenic |
| TACGTTAATATTTGAACTGG+TGG | 0.485813 | 5_4:-41677319 | Msa0851390:CDS |
| GAGACCGATCTGGACACGTT+GGG | 0.487778 | 5_4:-41679989 | Msa0851390:CDS |
| ATATCAATGAGAGGATCAAC+CGG | 0.488383 | 5_4:+41676499 | None:intergenic |
| ATAAGCCGCCTCTTCTTTGG+AGG | 0.492336 | 5_4:+41676298 | None:intergenic |
| TATCCACACTTATCCTATCA+AGG | 0.495098 | 5_4:-41676433 | Msa0851390:CDS |
| CACTCGAATATGATGAGTAC+TGG | 0.495135 | 5_4:-41676469 | Msa0851390:CDS |
| GAGGCGGCTTATGCCTCCTT+CGG | 0.495331 | 5_4:-41676287 | Msa0851390:CDS |
| GTGAAAACCACTTACAAAGT+TGG | 0.496585 | 5_4:+41677535 | None:intergenic |
| CAATATATTCTGAGCAGTGC+TGG | 0.499295 | 5_4:+41677250 | None:intergenic |
| ATGTTCGCTGGTCAAAAGAT+TGG | 0.500143 | 5_4:+41676749 | None:intergenic |
| ATGTTCGCTGGTCAAAAGAT+TGG | 0.500143 | 5_4:+41677001 | None:intergenic |
| TGGAAGTAGCTTGTTAGTCT+AGG | 0.503469 | 5_4:+41679644 | None:intergenic |
| TTTGAACCAAGAGCAGCATC+GGG | 0.506018 | 5_4:-41677105 | Msa0851390:CDS |
| ATGATTGCTGGTCAAAAGAT+TGG | 0.512316 | 5_4:+41677064 | None:intergenic |
| GTCATTGATGTTGATGGAGT+TGG | 0.516986 | 5_4:-41680028 | Msa0851390:CDS |
| TGTGGACTGGTTTCCACCTA+CGG | 0.519375 | 5_4:-41677370 | Msa0851390:CDS |
| TAAGATAGAAGAGAAGCAAA+AGG | 0.525918 | 5_4:-41678675 | Msa0851390:CDS |
| AAGAGGCAATATCATTGGAA+TGG | 0.526389 | 5_4:+41681280 | None:intergenic |
| TTAATATTAACCACTTCGCC+AGG | 0.527512 | 5_4:+41678372 | None:intergenic |
| GAAAACCATGGTTCACATGA+AGG | 0.530457 | 5_4:-41677297 | Msa0851390:CDS |
| ATCTTCGTTACAGTCAAGTC+AGG | 0.533835 | 5_4:-41679894 | Msa0851390:intron |
| TCCTTGACAGGTACCACAGC+AGG | 0.535734 | 5_4:-41677657 | Msa0851390:intron |
| TTGCATATGGATTCTATCAA+GGG | 0.537748 | 5_4:-41678230 | Msa0851390:CDS |
| TACCGAAACTGAGAAACTCA+TGG | 0.541502 | 5_4:+41681244 | None:intergenic |
| ACATGATGCATTTGTAGAGT+TGG | 0.541673 | 5_4:+41676406 | None:intergenic |
| ATTGACAACAACAGGATTGG+TGG | 0.542703 | 5_4:-41677231 | Msa0851390:CDS |
| TATATTGACAACAACAGGAT+TGG | 0.544673 | 5_4:-41677234 | Msa0851390:CDS |
| AACAATTGGTTAGTCTCAGA+GGG | 0.551951 | 5_4:+41677558 | None:intergenic |
| ACCGAAACTGAGAAACTCAT+GGG | 0.552514 | 5_4:+41681245 | None:intergenic |
| CAGATTTGCCGTCACAATCA+GGG | 0.553501 | 5_4:+41678588 | None:intergenic |
| TGTCTGAAGAATGGAAAGAG+AGG | 0.554930 | 5_4:-41678085 | Msa0851390:CDS |
| TCATTATCTAGAGCTCTTCG+TGG | 0.558865 | 5_4:-41677603 | Msa0851390:CDS |
| ATTGATGTTGATGGAGTTGG+TGG | 0.561060 | 5_4:-41680025 | Msa0851390:CDS |
| CAGGAAAACTCATTTGATTG+TGG | 0.562524 | 5_4:-41677638 | Msa0851390:CDS |
| GCGGCTTATGCCTCCTTCGG+TGG | 0.564699 | 5_4:-41676284 | Msa0851390:CDS |
| GCTGGAATCTCTCAATTCGA+TGG | 0.566606 | 5_4:-41681008 | Msa0851390:CDS |
| TAGAAGAGAAGCAAAAGGCT+AGG | 0.566794 | 5_4:-41678670 | Msa0851390:CDS |
| TCGACTTCCCATTCTGGCCA+GGG | 0.568090 | 5_4:-41677180 | Msa0851390:CDS |
| ATATTACAAGTATTGTAAGA+TGG | 0.575254 | 5_4:+41677144 | None:intergenic |
| TCATATGAAGTAATGATCGT+TGG | 0.582348 | 5_4:+41676548 | None:intergenic |
| ATTCCCTCGTAATATGGATG+TGG | 0.583200 | 5_4:-41679687 | Msa0851390:CDS |
| GTCTGAAAGACCTTGTGCAA+AGG | 0.583698 | 5_4:-41678196 | Msa0851390:intron |
| CCAGTTCAAATATTAACGTA+CGG | 0.591408 | 5_4:+41677322 | None:intergenic |
| GCTTCCCAACGTGTCCAGAT+CGG | 0.592976 | 5_4:+41679985 | None:intergenic |
| AGGAGGAAACTGGTTCATCA+TGG | 0.593600 | 5_4:+41681323 | None:intergenic |
| TTGCCGTCACAATCAGGGTG+GGG | 0.594456 | 5_4:+41678593 | None:intergenic |
| GCATATTTCAGACAAAGAGC+CGG | 0.603949 | 5_4:-41678273 | Msa0851390:intron |
| ATGAGAGACCTCCAAAGAAG+AGG | 0.609720 | 5_4:-41676306 | Msa0851390:CDS |
| CCTTCCACATCCATATTACG+AGG | 0.611135 | 5_4:+41679683 | None:intergenic |
| GCTGGTTATCACCATCGTCA+GGG | 0.613048 | 5_4:+41677268 | None:intergenic |
| TTTGCCGTCACAATCAGGGT+GGG | 0.613309 | 5_4:+41678592 | None:intergenic |
| CCTCGTAATATGGATGTGGA+AGG | 0.615697 | 5_4:-41679683 | Msa0851390:CDS |
| TTTGAACTGGTGGAAAACCA+TGG | 0.618826 | 5_4:-41677309 | Msa0851390:CDS |
| TCCATGACTTCCACCGAAGG+AGG | 0.619807 | 5_4:+41676274 | None:intergenic |
| GAACAATTGGTTAGTCTCAG+AGG | 0.620039 | 5_4:+41677557 | None:intergenic |
| ATCCACACTTATCCTATCAA+GGG | 0.620082 | 5_4:-41676432 | Msa0851390:CDS |
| GAATCCATATGCAATATACA+TGG | 0.622872 | 5_4:+41678239 | None:intergenic |
| GATTCCAAAACCCTAGAAGG+AGG | 0.624471 | 5_4:+41681306 | None:intergenic |
| TAGATGATGATATTGTTCGC+TGG | 0.628353 | 5_4:+41676674 | None:intergenic |
| TAGATGATGATATTGTTCGC+TGG | 0.628353 | 5_4:+41676926 | None:intergenic |
| GGAGACCGATCTGGACACGT+TGG | 0.628953 | 5_4:-41679990 | Msa0851390:CDS |
| TTGAGATAAGCATCCGTAGG+TGG | 0.629538 | 5_4:+41677357 | None:intergenic |
| AAAAGCCTTCATGTGAACCA+TGG | 0.631459 | 5_4:+41677292 | None:intergenic |
| TAGATGATGATAATGATCGC+TGG | 0.636105 | 5_4:+41676611 | None:intergenic |
| TAGATGATGATAATGATCGC+TGG | 0.636105 | 5_4:+41676800 | None:intergenic |
| TAGATGATGATAATGATCGC+TGG | 0.636105 | 5_4:+41676863 | None:intergenic |
| CGCTTGAGATAAGCATCCGT+AGG | 0.636755 | 5_4:+41677354 | None:intergenic |
| AATCCCCACCCTGATTGTGA+CGG | 0.637758 | 5_4:-41678596 | Msa0851390:CDS |
| CAAACTTGTCTATCCAAAAG+GGG | 0.646120 | 5_4:-41679480 | Msa0851390:CDS |
| GATTCCATGACTTCCACCGA+AGG | 0.647073 | 5_4:+41676271 | None:intergenic |
| TGTTGAGAAATATCAATGAG+AGG | 0.651346 | 5_4:+41676490 | None:intergenic |
| ATGATCGCTGGTCAAAAGAG+TGG | 0.651671 | 5_4:+41676623 | None:intergenic |
| ATGATCGCTGGTCAAAAGAG+TGG | 0.651671 | 5_4:+41676812 | None:intergenic |
| ATGATCGCTGGTCAAAAGAG+TGG | 0.651671 | 5_4:+41676875 | None:intergenic |
| TATTCAAGAATCTTGATGAG+AGG | 0.651763 | 5_4:+41678039 | None:intergenic |
| CTGGTTATCACCATCGTCAG+GGG | 0.651767 | 5_4:+41677269 | None:intergenic |
| AGAGACCTCCAAAGAAGAGG+CGG | 0.652837 | 5_4:-41676303 | Msa0851390:CDS |
| GATTTGTTATCCTGGCGAAG+TGG | 0.654014 | 5_4:-41678382 | Msa0851390:CDS |
| TTAAGAAATACCTTTGCACA+AGG | 0.654793 | 5_4:+41678186 | None:intergenic |
| TAGATGATGATAATGTTCGC+TGG | 0.655576 | 5_4:+41676737 | None:intergenic |
| TAGATGATGATAATGTTCGC+TGG | 0.655576 | 5_4:+41676989 | None:intergenic |
| GTGTCATTTATTCAACGTGG+AGG | 0.657884 | 5_4:-41677205 | Msa0851390:CDS |
| ATGGGATTGAGAATTTGAAG+AGG | 0.659303 | 5_4:+41681263 | None:intergenic |
| ACAACAACAGGATTGGTGGT+CGG | 0.665970 | 5_4:-41677227 | Msa0851390:CDS |
| CTTCCACATCCATATTACGA+GGG | 0.670246 | 5_4:+41679684 | None:intergenic |
| GTCCCTTGATAGGATAAGTG+TGG | 0.675915 | 5_4:+41676430 | None:intergenic |
| ATTTGCCGTCACAATCAGGG+TGG | 0.676872 | 5_4:+41678591 | None:intergenic |
| GTAAGCAAGACATACCTCAA+CGG | 0.678921 | 5_4:+41678004 | None:intergenic |
| TCGGTGTCATTTATTCAACG+TGG | 0.682457 | 5_4:-41677208 | Msa0851390:CDS |
| GCTGTGAAACAAGATACTAG+TGG | 0.751401 | 5_4:-41679923 | Msa0851390:CDS |
| GTGAAACAAGATACTAGTGG+TGG | 0.802443 | 5_4:-41679920 | Msa0851390:CDS |
| AAGCAAGACATACCTCAACG+GGG | 0.831878 | 5_4:+41678006 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAATAAAAAATTTC+GGG | + | chr5_4:41676693-41676712 | None:intergenic | 10.0% |
| !! | TTAAAAATTACAAATTGATT+TGG | + | chr5_4:41677282-41677301 | None:intergenic | 10.0% |
| !! | TTAAGTTATATTATTTCAAT+TGG | - | chr5_4:41680121-41680140 | Msa0851390:intron | 10.0% |
| !! | GAATCATTAAAATAATTGAT+TGG | - | chr5_4:41677200-41677219 | Msa0851390:CDS | 15.0% |
| !! | TATAATTAACTAAAATCAGA+AGG | - | chr5_4:41677247-41677266 | Msa0851390:CDS | 15.0% |
| !!! | AATATGCATTTATTTTTGTA+TGG | + | chr5_4:41677411-41677430 | None:intergenic | 15.0% |
| !!! | AAAAATCTTTTTGAAATCAA+TGG | + | chr5_4:41677633-41677652 | None:intergenic | 15.0% |
| !! | AAAAAATATTTACAACGTTA+TGG | - | chr5_4:41677979-41677998 | Msa0851390:intron | 15.0% |
| !! | AAGTTATTAACATTACAATT+TGG | + | chr5_4:41678537-41678556 | None:intergenic | 15.0% |
| !! | ATTGTAATGTTAATAACTTA+TGG | - | chr5_4:41678538-41678557 | Msa0851390:CDS | 15.0% |
| !! | TTGTAATGTTAATAACTTAT+GGG | - | chr5_4:41678539-41678558 | Msa0851390:CDS | 15.0% |
| !! | ATCTACTGTTAATAAAATAA+AGG | + | chr5_4:41678685-41678704 | None:intergenic | 15.0% |
| !!! | AAAGTCTTATTTTATCATTT+TGG | + | chr5_4:41678755-41678774 | None:intergenic | 15.0% |
| !! | AATATAAACAAACAGTTATA+TGG | - | chr5_4:41678808-41678827 | Msa0851390:intron | 15.0% |
| !!! | AACAATTTTGCAATAAAAAT+AGG | + | chr5_4:41679746-41679765 | None:intergenic | 15.0% |
| !!! | ATAACATTAATCTTGATTTT+TGG | - | chr5_4:41681258-41681277 | Msa0851390:CDS | 15.0% |
| !! | AAAAAACTCAAAAACTAACA+CGG | + | chr5_4:41676728-41676747 | None:intergenic | 20.0% |
| !! | TTGATAAAGATTCAAATAAG+AGG | - | chr5_4:41676878-41676897 | Msa0851390:CDS | 20.0% |
| !! | TCATCATTAAAAGAATCAAT+TGG | - | chr5_4:41676941-41676960 | Msa0851390:CDS | 20.0% |
| !! | TAATAATCTACTCAAAATTG+TGG | - | chr5_4:41676981-41677000 | Msa0851390:CDS | 20.0% |
| !!! | TACTATTTTTCTGTTTAAGA+TGG | - | chr5_4:41677094-41677113 | Msa0851390:CDS | 20.0% |
| !!! | ACTATTTTTCTGTTTAAGAT+GGG | - | chr5_4:41677095-41677114 | Msa0851390:CDS | 20.0% |
| !!! | TCTTGAGTTGAAAAAATTTA+AGG | - | chr5_4:41677124-41677143 | Msa0851390:CDS | 20.0% |
| !!! | CTTGAGTTGAAAAAATTTAA+GGG | - | chr5_4:41677125-41677144 | Msa0851390:CDS | 20.0% |
| !! | TTACAAATAAAGTTTACCTT+AGG | + | chr5_4:41677761-41677780 | None:intergenic | 20.0% |
| !! | TAGAGATTTAGTTATATTGT+AGG | - | chr5_4:41677796-41677815 | Msa0851390:intron | 20.0% |
| !!! | TATTTTTTTGTACTTACTCT+TGG | + | chr5_4:41677967-41677986 | None:intergenic | 20.0% |
| !! | CAATAACAATATTAGAACTA+AGG | + | chr5_4:41678614-41678633 | None:intergenic | 20.0% |
| !! | AAAATAAGACTTTCAATATC+AGG | - | chr5_4:41678762-41678781 | Msa0851390:intron | 20.0% |
| !! | ACATTATAACTACTGAAAAA+TGG | - | chr5_4:41678841-41678860 | Msa0851390:intron | 20.0% |
| !! | CATTATAACTACTGAAAAAT+GGG | - | chr5_4:41678842-41678861 | Msa0851390:intron | 20.0% |
| !!! | CTGTTTAAAAATCTCAATTT+TGG | - | chr5_4:41678875-41678894 | Msa0851390:intron | 20.0% |
| !! | AGAAAAAACTATTGAAAAAG+TGG | + | chr5_4:41678946-41678965 | None:intergenic | 20.0% |
| !! | CTTAAAAAATATATATGGCT+AGG | + | chr5_4:41680106-41680125 | None:intergenic | 20.0% |
| !!! | ATATTACAAGTATTGTAAGA+TGG | + | chr5_4:41680447-41680466 | None:intergenic | 20.0% |
| !! | ATCTTACAATACTTGTAATA+TGG | - | chr5_4:41680446-41680465 | Msa0851390:intron | 20.0% |
| ! | CAAAACACAAAAAAATCACA+AGG | + | chr5_4:41676440-41676459 | None:intergenic | 25.0% |
| ! | AACATCAGTAAATCAACAAT+AGG | + | chr5_4:41676520-41676539 | None:intergenic | 25.0% |
| !! | ATGATCAATGTTTTCAATCA+TGG | - | chr5_4:41676558-41676577 | Msa0851390:CDS | 25.0% |
| !!! | CTGAGTTGATAAAATTGAAA+TGG | - | chr5_4:41676833-41676852 | Msa0851390:CDS | 25.0% |
| ! | TGTCAATGTAACATTAGATT+TGG | - | chr5_4:41677055-41677074 | Msa0851390:CDS | 25.0% |
| ! | TCAAACTGAAATCTTCAATT+AGG | + | chr5_4:41677309-41677328 | None:intergenic | 25.0% |
| !! | CAAAAAGATTTTTGATGAGT+TGG | - | chr5_4:41677640-41677659 | Msa0851390:CDS | 25.0% |
| ! | ATTTGTAAGTTTACATCCTA+AGG | - | chr5_4:41677773-41677792 | Msa0851390:intron | 25.0% |
| ! | TATAACTAAATCTCTACCTT+AGG | + | chr5_4:41677792-41677811 | None:intergenic | 25.0% |
| !! | TTATACAGAGTTCTCTTTTT+GGG | - | chr5_4:41678002-41678021 | Msa0851390:intron | 25.0% |
| ! | TCTAGGCTTAATTAATGATT+TGG | - | chr5_4:41678290-41678309 | Msa0851390:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr5_4:41678570-41678589 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr5_4:41678569-41678588 | None:intergenic | 25.0% |
| ! | GCTAACATATACTAACTTAA+GGG | + | chr5_4:41678359-41678378 | None:intergenic | 25.0% |
| ! | TTTGACAGTAGAGATTTATT+TGG | - | chr5_4:41678487-41678506 | Msa0851390:intron | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr5_4:41678569-41678588 | Msa0851390:CDS | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr5_4:41678570-41678589 | Msa0851390:CDS | 25.0% |
| !! | AATATTGTTATTGTGAACCT+TGG | - | chr5_4:41678621-41678640 | Msa0851390:CDS | 25.0% |
| !! | TTCTGATTGGAATTCAATTT+TGG | - | chr5_4:41679150-41679169 | Msa0851390:intron | 25.0% |
| !!! | TTAATAGTGATTTGTTATCC+TGG | - | chr5_4:41679198-41679217 | Msa0851390:intron | 25.0% |
| ! | TGTCATAATAGTTGACAAAA+TGG | + | chr5_4:41679477-41679496 | None:intergenic | 25.0% |
| ! | TTTCTTATTGCTCAATGAAA+TGG | - | chr5_4:41679659-41679678 | Msa0851390:CDS | 25.0% |
| ! | AGAAAAATTCAACATATGTC+AGG | + | chr5_4:41680191-41680210 | None:intergenic | 25.0% |
| ! | TACTTGTAATATGGTTCTTA+AGG | - | chr5_4:41680455-41680474 | Msa0851390:intron | 25.0% |
| !! | TACAGATACTATCAATTTTC+CGG | - | chr5_4:41681070-41681089 | Msa0851390:intron | 25.0% |
| ATTTGAAGAGGCAATATCAT+TGG | + | chr5_4:41676316-41676335 | None:intergenic | 30.0% | |
| AAATCAACAATAGGATCATC+AGG | + | chr5_4:41676511-41676530 | None:intergenic | 30.0% | |
| !!! | CAAGCACACATTTTTTTTCA+AGG | + | chr5_4:41676861-41676880 | None:intergenic | 30.0% |
| TGATTCCAAATACAATGCTA+CGG | + | chr5_4:41676924-41676943 | None:intergenic | 30.0% | |
| GAATCAATTGGAATTTGATG+TGG | - | chr5_4:41676953-41676972 | Msa0851390:CDS | 30.0% | |
| AATGTAAGAGGAATTGTGTT+TGG | - | chr5_4:41677178-41677197 | Msa0851390:CDS | 30.0% | |
| AGAAATGAATTAGTGACTAG+TGG | - | chr5_4:41677331-41677350 | Msa0851390:CDS | 30.0% | |
| GGTTCATATCTTTCAACTTA+TGG | - | chr5_4:41677352-41677371 | Msa0851390:CDS | 30.0% | |
| ! | GAATTTGAAGTACTAAAACG+TGG | + | chr5_4:41677507-41677526 | None:intergenic | 30.0% |
| AGGTATATTATGTCCCTTTA+GGG | - | chr5_4:41677714-41677733 | Msa0851390:intron | 30.0% | |
| ATTTGTGAGTTTACATCCTA+AGG | - | chr5_4:41677742-41677761 | Msa0851390:intron | 30.0% | |
| ! | TATGTCATTCTTTTTGCAGA+CGG | - | chr5_4:41677826-41677845 | Msa0851390:intron | 30.0% |
| AAATGTATTCCCTCGTAATA+TGG | - | chr5_4:41677895-41677914 | Msa0851390:intron | 30.0% | |
| ! | GTTATACAGAGTTCTCTTTT+TGG | - | chr5_4:41678001-41678020 | Msa0851390:intron | 30.0% |
| TCCAAAATGAAAACATTGTG+TGG | - | chr5_4:41678035-41678054 | Msa0851390:CDS | 30.0% | |
| ! | ACCACACAATGTTTTCATTT+TGG | + | chr5_4:41678039-41678058 | None:intergenic | 30.0% |
| AAAATGAAAACATTGTGTGG+TGG | - | chr5_4:41678038-41678057 | Msa0851390:CDS | 30.0% | |
| ACAAACTTGTCTATCCAAAA+GGG | - | chr5_4:41678107-41678126 | Msa0851390:intron | 30.0% | |
| ! | GTGTCATTGATGTATGTATT+TGG | + | chr5_4:41678181-41678200 | None:intergenic | 30.0% |
| GTTACATTAACGTTACCATT+TGG | - | chr5_4:41678332-41678351 | Msa0851390:intron | 30.0% | |
| GGCTAACATATACTAACTTA+AGG | + | chr5_4:41678360-41678379 | None:intergenic | 30.0% | |
| ! | CTTTTGCCAAAACGTTAAAT+AGG | - | chr5_4:41678401-41678420 | Msa0851390:CDS | 30.0% |
| GTAGAGATTTATTTGGTTGA+CGG | - | chr5_4:41678494-41678513 | Msa0851390:intron | 30.0% | |
| TTGACGGAAGATAACTTAAA+GGG | - | chr5_4:41678510-41678529 | Msa0851390:CDS | 30.0% | |
| CTAAGGCTTAATTAATGATG+TGG | + | chr5_4:41678597-41678616 | None:intergenic | 30.0% | |
| TAAGATAGAAGAGAAGCAAA+AGG | - | chr5_4:41678913-41678932 | Msa0851390:intron | 30.0% | |
| !!! | TAGTTTTTTCTTTCGAAAGC+TGG | - | chr5_4:41678955-41678974 | Msa0851390:intron | 30.0% |
| CATTTCAACATGTTCGTAAA+TGG | - | chr5_4:41679023-41679042 | Msa0851390:intron | 30.0% | |
| ! | ATCTGTATTGATGTTCTGAT+TGG | - | chr5_4:41679137-41679156 | Msa0851390:intron | 30.0% |
| ACTACCATGTATATTGCATA+TGG | - | chr5_4:41679345-41679364 | Msa0851390:intron | 30.0% | |
| GAATCCATATGCAATATACA+TGG | + | chr5_4:41679352-41679371 | None:intergenic | 30.0% | |
| ATTGCATATGGATTCTATCA+AGG | - | chr5_4:41679357-41679376 | Msa0851390:intron | 30.0% | |
| TTGCATATGGATTCTATCAA+GGG | - | chr5_4:41679358-41679377 | Msa0851390:intron | 30.0% | |
| TTAAGAAATACCTTTGCACA+AGG | + | chr5_4:41679405-41679424 | None:intergenic | 30.0% | |
| AGAGAAGGAAATTTAATGTG+TGG | + | chr5_4:41679436-41679455 | None:intergenic | 30.0% | |
| CTGATAAGTTAAAGAAGAGA+AGG | + | chr5_4:41679451-41679470 | None:intergenic | 30.0% | |
| ACAGTTATTTGTCTGAAGAA+TGG | - | chr5_4:41679494-41679513 | Msa0851390:CDS | 30.0% | |
| TATTCAAGAATCTTGATGAG+AGG | + | chr5_4:41679552-41679571 | None:intergenic | 30.0% | |
| !!! | TGGATTTCAGTTTTATTTGC+TGG | - | chr5_4:41679679-41679698 | Msa0851390:CDS | 30.0% |
| ! | AAAATTGATTCCAAGTCACT+GGG | - | chr5_4:41679702-41679721 | Msa0851390:CDS | 30.0% |
| CAAAGTATAGGCCAAATAAT+GGG | + | chr5_4:41679796-41679815 | None:intergenic | 30.0% | |
| ACAAAGTATAGGCCAAATAA+TGG | + | chr5_4:41679797-41679816 | None:intergenic | 30.0% | |
| TTCAAAAAGCGACAAAGTAT+AGG | + | chr5_4:41679808-41679827 | None:intergenic | 30.0% | |
| CTAGATAATGAAGCAAAAAG+AGG | + | chr5_4:41679976-41679995 | None:intergenic | 30.0% | |
| ACTTACAAAGTTGGAACAAT+TGG | + | chr5_4:41680047-41680066 | None:intergenic | 30.0% | |
| AATTGTTCCAACTTTGTAAG+TGG | - | chr5_4:41680046-41680065 | Msa0851390:intron | 30.0% | |
| ! | AACTTTGTAAGTGGTTTTCA+CGG | - | chr5_4:41680055-41680074 | Msa0851390:intron | 30.0% |
| ATGGCTAGGAACAAAATAAT+TGG | + | chr5_4:41680092-41680111 | None:intergenic | 30.0% | |
| GATTCATATGGTTCCTTATA+TGG | - | chr5_4:41680159-41680178 | Msa0851390:intron | 30.0% | |
| TGTCAGGTTAAATCCATATA+AGG | + | chr5_4:41680175-41680194 | None:intergenic | 30.0% | |
| !!! | TGAATTTTTCTAGCTCAATG+TGG | - | chr5_4:41680200-41680219 | Msa0851390:intron | 30.0% |
| CCAGTTCAAATATTAACGTA+CGG | + | chr5_4:41680269-41680288 | None:intergenic | 30.0% | |
| TACGTTAATATTTGAACTGG+TGG | - | chr5_4:41680269-41680288 | Msa0851390:intron | 30.0% | |
| CAGAATATATTGACAACAAC+AGG | - | chr5_4:41680349-41680368 | Msa0851390:intron | 30.0% | |
| TATATTGACAACAACAGGAT+TGG | - | chr5_4:41680354-41680373 | Msa0851390:intron | 30.0% | |
| TCATATGAAGTAATGATCGT+TGG | + | chr5_4:41681043-41681062 | None:intergenic | 30.0% | |
| TGTTGAGAAATATCAATGAG+AGG | + | chr5_4:41681101-41681120 | None:intergenic | 30.0% | |
| AAGAGGCAATATCATTGGAA+TGG | + | chr5_4:41676311-41676330 | None:intergenic | 35.0% | |
| ATGGGATTGAGAATTTGAAG+AGG | + | chr5_4:41676328-41676347 | None:intergenic | 35.0% | |
| ! | TCAATGTTTTCAATCATGGC+TGG | - | chr5_4:41676562-41676581 | Msa0851390:CDS | 35.0% |
| GTTTGCAAATTATCAGTTGC+AGG | - | chr5_4:41676622-41676641 | Msa0851390:CDS | 35.0% | |
| TGAAACCGTAGCATTGTATT+TGG | - | chr5_4:41676916-41676935 | Msa0851390:CDS | 35.0% | |
| ACATTGACATCTCTTGCTTA+GGG | + | chr5_4:41677044-41677063 | None:intergenic | 35.0% | |
| TACATTGACATCTCTTGCTT+AGG | + | chr5_4:41677045-41677064 | None:intergenic | 35.0% | |
| !!! | CAAGCTCACTTTTGTTTTCA+TGG | + | chr5_4:41677153-41677172 | None:intergenic | 35.0% |
| CATGAAAACAAAAGTGAGCT+TGG | - | chr5_4:41677151-41677170 | Msa0851390:CDS | 35.0% | |
| CCTCGACAATAAAAATCAAG+AGG | + | chr5_4:41677453-41677472 | None:intergenic | 35.0% | |
| ! | CCTCTTGATTTTTATTGTCG+AGG | - | chr5_4:41677450-41677469 | Msa0851390:intron | 35.0% |
| !! | AGTTGGTGGTAACTTCAATT+TGG | - | chr5_4:41677577-41677596 | Msa0851390:CDS | 35.0% |
| CAGGTATATTATGTCCCTTT+AGG | - | chr5_4:41677713-41677732 | Msa0851390:intron | 35.0% | |
| TCACAAATTGAGACCCTAAA+GGG | + | chr5_4:41677730-41677749 | None:intergenic | 35.0% | |
| TGGCATTAATTCATCCAGTT+TGG | - | chr5_4:41677856-41677875 | Msa0851390:intron | 35.0% | |
| !! | TCATGTCTGAAACAGTTTTC+AGG | - | chr5_4:41678075-41678094 | Msa0851390:CDS | 35.0% |
| GGATAGACAAGTTTGTGAAA+AGG | + | chr5_4:41678103-41678122 | None:intergenic | 35.0% | |
| CACAAACTTGTCTATCCAAA+AGG | - | chr5_4:41678106-41678125 | Msa0851390:intron | 35.0% | |
| CAAACTTGTCTATCCAAAAG+GGG | - | chr5_4:41678108-41678127 | Msa0851390:intron | 35.0% | |
| !! | CTTTGCTTGCATTTAGTTCT+AGG | - | chr5_4:41678273-41678292 | Msa0851390:intron | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr5_4:41678310-41678329 | Msa0851390:intron | 35.0% | |
| TACTAACTTAAGGGACCAAA+TGG | + | chr5_4:41678350-41678369 | None:intergenic | 35.0% | |
| ! | ACTGATGGTGAGGATTTATT+TGG | + | chr5_4:41678381-41678400 | None:intergenic | 35.0% |
| ! | CATGTGCCTATTTAACGTTT+TGG | + | chr5_4:41678410-41678429 | None:intergenic | 35.0% |
| GTTAAATAGGCACATGTGAA+CGG | - | chr5_4:41678414-41678433 | Msa0851390:intron | 35.0% | |
| GTTGACGGAAGATAACTTAA+AGG | - | chr5_4:41678509-41678528 | Msa0851390:CDS | 35.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr5_4:41678310-41678329 | None:intergenic | 35.0% | |
| GTTACTTACTTGAAGTTCAC+AGG | + | chr5_4:41679091-41679110 | None:intergenic | 35.0% | |
| !! | GAATTCAATTTTGGCCATGT+TGG | - | chr5_4:41679159-41679178 | Msa0851390:intron | 35.0% |
| TTAATATTAACCACTTCGCC+AGG | + | chr5_4:41679219-41679238 | None:intergenic | 35.0% | |
| GGCGAAGTGGTTAATATTAA+TGG | - | chr5_4:41679219-41679238 | Msa0851390:intron | 35.0% | |
| !! | ATACATGGTAGTGACTTTTC+CGG | + | chr5_4:41679337-41679356 | None:intergenic | 35.0% |
| TCTATCAAGGGACATCATAA+TGG | - | chr5_4:41679370-41679389 | Msa0851390:intron | 35.0% | |
| GAGAGGAAGAATGATACATA+TGG | - | chr5_4:41679520-41679539 | Msa0851390:intron | 35.0% | |
| ! | GAAAATTGATTCCAAGTCAC+TGG | - | chr5_4:41679701-41679720 | Msa0851390:CDS | 35.0% |
| AAAATAGGCAACTTTCGTAG+TGG | + | chr5_4:41679731-41679750 | None:intergenic | 35.0% | |
| TGAATGCAAGTCCCATTATT+TGG | - | chr5_4:41679782-41679801 | Msa0851390:intron | 35.0% | |
| ! | ATTTATTTCTCGCCTATCTC+TGG | - | chr5_4:41679827-41679846 | Msa0851390:intron | 35.0% |
| CAGGAAAACTCATTTGATTG+TGG | - | chr5_4:41679950-41679969 | Msa0851390:CDS | 35.0% | |
| !! | AACAATTGGTTAGTCTCAGA+GGG | + | chr5_4:41680033-41680052 | None:intergenic | 35.0% |
| GTGAAAACCACTTACAAAGT+TGG | + | chr5_4:41680056-41680075 | None:intergenic | 35.0% | |
| TAACTCCCTAGTGATTCATA+TGG | - | chr5_4:41680147-41680166 | Msa0851390:intron | 35.0% | |
| AGGAACCATATGAATCACTA+GGG | + | chr5_4:41680155-41680174 | None:intergenic | 35.0% | |
| AAGGAACCATATGAATCACT+AGG | + | chr5_4:41680156-41680175 | None:intergenic | 35.0% | |
| CCGTACGTTAATATTTGAAC+TGG | - | chr5_4:41680266-41680285 | Msa0851390:intron | 35.0% | |
| ATGGAAACATTTCTATTCCC+TGG | + | chr5_4:41680428-41680447 | None:intergenic | 35.0% | |
| ATGATTGCTGGTCAAAAGAT+TGG | + | chr5_4:41680527-41680546 | None:intergenic | 35.0% | |
| ! | TAGATGATGATAATGTTCGC+TGG | + | chr5_4:41680602-41680621 | None:intergenic | 35.0% |
| TAGATGATGATATTGTTCGC+TGG | + | chr5_4:41680665-41680684 | None:intergenic | 35.0% | |
| ! | TAGATGATGATAATGATCGC+TGG | + | chr5_4:41680728-41680747 | None:intergenic | 35.0% |
| ! | TAGATGATGATAATGATCGC+TGG | + | chr5_4:41680728-41680747 | None:intergenic | 35.0% |
| ! | TAGATGATGATAATGTTCGC+TGG | + | chr5_4:41680602-41680621 | None:intergenic | 35.0% |
| TAGATGATGATATTGTTCGC+TGG | + | chr5_4:41680665-41680684 | None:intergenic | 35.0% | |
| ! | TAGATGATGATAATGATCGC+TGG | + | chr5_4:41680728-41680747 | None:intergenic | 35.0% |
| ATGATCGTTGGTCAAAAGAT+TGG | + | chr5_4:41681031-41681050 | None:intergenic | 35.0% | |
| ATATCAATGAGAGGATCAAC+CGG | + | chr5_4:41681092-41681111 | None:intergenic | 35.0% | |
| TATCCACACTTATCCTATCA+AGG | - | chr5_4:41681155-41681174 | Msa0851390:intron | 35.0% | |
| ATCCACACTTATCCTATCAA+GGG | - | chr5_4:41681156-41681175 | Msa0851390:intron | 35.0% | |
| ACATGATGCATTTGTAGAGT+TGG | + | chr5_4:41681185-41681204 | None:intergenic | 35.0% | |
| AGAGATTCCAAAACCCTAGA+AGG | + | chr5_4:41676288-41676307 | None:intergenic | 40.0% | |
| TCCCATGAGTTTCTCAGTTT+CGG | - | chr5_4:41676342-41676361 | Msa0851390:CDS | 40.0% | |
| ACCGAAACTGAGAAACTCAT+GGG | + | chr5_4:41676346-41676365 | None:intergenic | 40.0% | |
| TACCGAAACTGAGAAACTCA+TGG | + | chr5_4:41676347-41676366 | None:intergenic | 40.0% | |
| GAGCTTGGTAGAAATGTAAG+AGG | - | chr5_4:41677166-41677185 | Msa0851390:CDS | 40.0% | |
| ! | GTCATTGATGTTGATGGAGT+TGG | - | chr5_4:41677560-41677579 | Msa0851390:CDS | 40.0% |
| ! | ATTGATGTTGATGGAGTTGG+TGG | - | chr5_4:41677563-41677582 | Msa0851390:CDS | 40.0% |
| GCTGTGAAACAAGATACTAG+TGG | - | chr5_4:41677665-41677684 | Msa0851390:intron | 40.0% | |
| GTGAAACAAGATACTAGTGG+TGG | - | chr5_4:41677668-41677687 | Msa0851390:intron | 40.0% | |
| ATCTTCGTTACAGTCAAGTC+AGG | - | chr5_4:41677694-41677713 | Msa0851390:intron | 40.0% | |
| CTCACAAATTGAGACCCTAA+AGG | + | chr5_4:41677731-41677750 | None:intergenic | 40.0% | |
| ! | TTTTTGCAGACGGAATCAGT+TGG | - | chr5_4:41677836-41677855 | Msa0851390:intron | 40.0% |
| TGCAATATCAGACTCCAAAC+TGG | + | chr5_4:41677873-41677892 | None:intergenic | 40.0% | |
| ATTCCCTCGTAATATGGATG+TGG | - | chr5_4:41677901-41677920 | Msa0851390:intron | 40.0% | |
| CTTCCACATCCATATTACGA+GGG | + | chr5_4:41677907-41677926 | None:intergenic | 40.0% | |
| !! | TGGAAGTAGCTTGTTAGTCT+AGG | + | chr5_4:41677947-41677966 | None:intergenic | 40.0% |
| !!! | GAGTTCTCTTTTTGGGACAT+AGG | - | chr5_4:41678009-41678028 | Msa0851390:intron | 40.0% |
| TTACTTAGCGTAACAGCATC+TGG | + | chr5_4:41678136-41678155 | None:intergenic | 40.0% | |
| !! | ACGTTTTGGCAAAAGACTGA+TGG | + | chr5_4:41678396-41678415 | None:intergenic | 40.0% |
| TGTGTATCCACCTTAGACAT+TGG | - | chr5_4:41678455-41678474 | Msa0851390:intron | 40.0% | |
| !! | CACCTTAGACATTGGCTTAA+CGG | - | chr5_4:41678463-41678482 | Msa0851390:intron | 40.0% |
| AACCGTTAAGCCAATGTCTA+AGG | + | chr5_4:41678468-41678487 | None:intergenic | 40.0% | |
| GAGAAAAGCTGTATGTTCCA+AGG | + | chr5_4:41678641-41678660 | None:intergenic | 40.0% | |
| TAGAAGAGAAGCAAAAGGCT+AGG | - | chr5_4:41678918-41678937 | Msa0851390:intron | 40.0% | |
| GCATATTTCAGACAAAGAGC+CGG | - | chr5_4:41679315-41679334 | Msa0851390:intron | 40.0% | |
| TGTCTGAAGAATGGAAAGAG+AGG | - | chr5_4:41679503-41679522 | Msa0851390:intron | 40.0% | |
| TAAGCAAGACATACCTCAAC+GGG | + | chr5_4:41679586-41679605 | None:intergenic | 40.0% | |
| GTAAGCAAGACATACCTCAA+CGG | + | chr5_4:41679587-41679606 | None:intergenic | 40.0% | |
| ACTAATCATCAGCCAGAGAT+AGG | + | chr5_4:41679842-41679861 | None:intergenic | 40.0% | |
| ! | TCAAATGAGTTTTCCTGCTG+TGG | + | chr5_4:41679947-41679966 | None:intergenic | 40.0% |
| ! | TCATTATCTAGAGCTCTTCG+TGG | - | chr5_4:41679985-41680004 | Msa0851390:CDS | 40.0% |
| CTCAGAGGGTTGAAATCAAA+TGG | + | chr5_4:41680019-41680038 | None:intergenic | 40.0% | |
| !! | GAACAATTGGTTAGTCTCAG+AGG | + | chr5_4:41680034-41680053 | None:intergenic | 40.0% |
| !!! | TTTTCTAGCTCAATGTGGAC+TGG | - | chr5_4:41680205-41680224 | Msa0851390:intron | 40.0% |
| TTTGAACTGGTGGAAAACCA+TGG | - | chr5_4:41680279-41680298 | Msa0851390:intron | 40.0% | |
| GAAAACCATGGTTCACATGA+AGG | - | chr5_4:41680291-41680310 | Msa0851390:intron | 40.0% | |
| AAAAGCCTTCATGTGAACCA+TGG | + | chr5_4:41680299-41680318 | None:intergenic | 40.0% | |
| CAATATATTCTGAGCAGTGC+TGG | + | chr5_4:41680341-41680360 | None:intergenic | 40.0% | |
| ATTGACAACAACAGGATTGG+TGG | - | chr5_4:41680357-41680376 | Msa0851390:intron | 40.0% | |
| !! | TCGGTGTCATTTATTCAACG+TGG | - | chr5_4:41680380-41680399 | Msa0851390:intron | 40.0% |
| !! | GTGTCATTTATTCAACGTGG+AGG | - | chr5_4:41680383-41680402 | Msa0851390:intron | 40.0% |
| ! | TTTTGAACCAAGAGCAGCAT+CGG | - | chr5_4:41680482-41680501 | Msa0851390:intron | 40.0% |
| ! | TCGATGATGATGATGATTGC+TGG | + | chr5_4:41680539-41680558 | None:intergenic | 40.0% |
| ATGTTCGCTGGTCAAAAGAT+TGG | + | chr5_4:41680590-41680609 | None:intergenic | 40.0% | |
| TTGTTCGCTGGTCAAAAGAT+TGG | + | chr5_4:41680653-41680672 | None:intergenic | 40.0% | |
| ATGTTCGCTGGTCAAAAGAT+TGG | + | chr5_4:41680590-41680609 | None:intergenic | 40.0% | |
| TTGTTCGCTGGTCAAAAGAT+TGG | + | chr5_4:41680653-41680672 | None:intergenic | 40.0% | |
| CACTCGAATATGATGAGTAC+TGG | - | chr5_4:41681119-41681138 | Msa0851390:intron | 40.0% | |
| !! | TGAGTACTGGCAACAAGAAT+TGG | - | chr5_4:41681132-41681151 | Msa0851390:intron | 40.0% |
| TGAACCAGTTTCCTCCTTCT+AGG | - | chr5_4:41676271-41676290 | Msa0851390:CDS | 45.0% | |
| GAACCAGTTTCCTCCTTCTA+GGG | - | chr5_4:41676272-41676291 | Msa0851390:CDS | 45.0% | |
| AAACCCTAGAAGGAGGAAAC+TGG | + | chr5_4:41676278-41676297 | None:intergenic | 45.0% | |
| !!! | GTTTCCTCCTTCTAGGGTTT+TGG | - | chr5_4:41676278-41676297 | Msa0851390:CDS | 45.0% |
| GATTCCAAAACCCTAGAAGG+AGG | + | chr5_4:41676285-41676304 | None:intergenic | 45.0% | |
| GCTGGAATCTCTCAATTCGA+TGG | - | chr5_4:41676580-41676599 | Msa0851390:CDS | 45.0% | |
| ! | TTGCAGGAGTCTCTCACTTT+TGG | - | chr5_4:41676638-41676657 | Msa0851390:CDS | 45.0% |
| ! | CTTTTCTTGTCATGCAGACG+AGG | - | chr5_4:41677538-41677557 | Msa0851390:intron | 45.0% |
| GACGAGGTCATTGATGTTGA+TGG | - | chr5_4:41677554-41677573 | Msa0851390:CDS | 45.0% | |
| CTTCAATTTGGAGACCGATC+TGG | - | chr5_4:41677589-41677608 | Msa0851390:CDS | 45.0% | |
| CCTTCCACATCCATATTACG+AGG | + | chr5_4:41677908-41677927 | None:intergenic | 45.0% | |
| CCTCGTAATATGGATGTGGA+AGG | - | chr5_4:41677905-41677924 | Msa0851390:intron | 45.0% | |
| CATTGTGTGGTGGCTAATTC+TGG | - | chr5_4:41678048-41678067 | Msa0851390:CDS | 45.0% | |
| ! | TTGGCAAAAGACTGATGGTG+AGG | + | chr5_4:41678391-41678410 | None:intergenic | 45.0% |
| CGTTAAGCCAATGTCTAAGG+TGG | + | chr5_4:41678465-41678484 | None:intergenic | 45.0% | |
| CTTTCGAAAGCTGGCTGATA+TGG | - | chr5_4:41678964-41678983 | Msa0851390:intron | 45.0% | |
| CAGATTTGCCGTCACAATCA+GGG | + | chr5_4:41679003-41679022 | None:intergenic | 45.0% | |
| !! | GATTTGTTATCCTGGCGAAG+TGG | - | chr5_4:41679206-41679225 | Msa0851390:intron | 45.0% |
| GTCTGAAAGACCTTGTGCAA+AGG | - | chr5_4:41679392-41679411 | Msa0851390:CDS | 45.0% | |
| ! | TATGCATTTTCTCCCCGTTG+AGG | - | chr5_4:41679570-41679589 | Msa0851390:intron | 45.0% |
| AAGCAAGACATACCTCAACG+GGG | + | chr5_4:41679585-41679604 | None:intergenic | 45.0% | |
| TGTGACTGAATGTCCTTGAC+AGG | - | chr5_4:41679919-41679938 | Msa0851390:CDS | 45.0% | |
| TTGAGATAAGCATCCGTAGG+TGG | + | chr5_4:41680234-41680253 | None:intergenic | 45.0% | |
| ! | ACAACAACAGGATTGGTGGT+CGG | - | chr5_4:41680361-41680380 | Msa0851390:intron | 45.0% |
| TTCTATTCCCTGGCCAGAAT+GGG | + | chr5_4:41680418-41680437 | None:intergenic | 45.0% | |
| TTTCTATTCCCTGGCCAGAA+TGG | + | chr5_4:41680419-41680438 | None:intergenic | 45.0% | |
| TTTGAACCAAGAGCAGCATC+GGG | - | chr5_4:41680483-41680502 | Msa0851390:intron | 45.0% | |
| ATGATCGCTGGTCAAAAGAG+TGG | + | chr5_4:41680716-41680735 | None:intergenic | 45.0% | |
| ATGATCGCTGGTCAAAAGAG+TGG | + | chr5_4:41680716-41680735 | None:intergenic | 45.0% | |
| ATGATCGCTGGTCAAAAGAG+TGG | + | chr5_4:41680716-41680735 | None:intergenic | 45.0% | |
| GTCCCTTGATAGGATAAGTG+TGG | + | chr5_4:41681161-41681180 | None:intergenic | 45.0% | |
| !! | TAGAGTTGGTGTCCCTTGAT+AGG | + | chr5_4:41681171-41681190 | None:intergenic | 45.0% |
| ATGAGAGACCTCCAAAGAAG+AGG | - | chr5_4:41681282-41681301 | Msa0851390:CDS | 45.0% | |
| !! | AAACAAAAAATAAAAAATTT+CGG | + | chr5_4:41676694-41676713 | None:intergenic | 5.0% |
| !!! | ATTTTTAAAATTTTAAAGTA+TGG | - | chr5_4:41677006-41677025 | Msa0851390:CDS | 5.0% |
| !! | TATAACTTAAAAAATATATA+TGG | + | chr5_4:41680111-41680130 | None:intergenic | 5.0% |
| ! | ACAGCATCTGGATCCCCTTT+TGG | + | chr5_4:41678124-41678143 | None:intergenic | 50.0% |
| AATCCCCACCCTGATTGTGA+CGG | - | chr5_4:41678992-41679011 | Msa0851390:intron | 50.0% | |
| TTTGCCGTCACAATCAGGGT+GGG | + | chr5_4:41678999-41679018 | None:intergenic | 50.0% | |
| ATTTGCCGTCACAATCAGGG+TGG | + | chr5_4:41679000-41679019 | None:intergenic | 50.0% | |
| GCAGATTTGCCGTCACAATC+AGG | + | chr5_4:41679004-41679023 | None:intergenic | 50.0% | |
| TCCAGTGATGTCTGCCAACA+TGG | + | chr5_4:41679176-41679195 | None:intergenic | 50.0% | |
| GTAGTGGTTTCCCAGTGACT+TGG | + | chr5_4:41679715-41679734 | None:intergenic | 50.0% | |
| !! | TGTGGACTGGTTTCCACCTA+CGG | - | chr5_4:41680218-41680237 | Msa0851390:intron | 50.0% |
| CGCTTGAGATAAGCATCCGT+AGG | + | chr5_4:41680237-41680256 | None:intergenic | 50.0% | |
| CTGGTTATCACCATCGTCAG+GGG | + | chr5_4:41680322-41680341 | None:intergenic | 50.0% | |
| GCTGGTTATCACCATCGTCA+GGG | + | chr5_4:41680323-41680342 | None:intergenic | 50.0% | |
| ! | TGCTGGTTATCACCATCGTC+AGG | + | chr5_4:41680324-41680343 | None:intergenic | 50.0% |
| AGAGACCTCCAAAGAAGAGG+CGG | - | chr5_4:41681285-41681304 | Msa0851390:CDS | 50.0% | |
| ATAAGCCGCCTCTTCTTTGG+AGG | + | chr5_4:41681293-41681312 | None:intergenic | 50.0% | |
| GATTCCATGACTTCCACCGA+AGG | + | chr5_4:41681320-41681339 | None:intergenic | 50.0% | |
| GAGACCGATCTGGACACGTT+GGG | - | chr5_4:41677599-41677618 | Msa0851390:CDS | 55.0% | |
| GCTTCCCAACGTGTCCAGAT+CGG | + | chr5_4:41677606-41677625 | None:intergenic | 55.0% | |
| TTGCCGTCACAATCAGGGTG+GGG | + | chr5_4:41678998-41679017 | None:intergenic | 55.0% | |
| GCCATGTTGGCAGACATCAC+TGG | - | chr5_4:41679172-41679191 | Msa0851390:intron | 55.0% | |
| TCCTTGACAGGTACCACAGC+AGG | - | chr5_4:41679931-41679950 | Msa0851390:CDS | 55.0% | |
| TCCTGCTGTGGTACCTGTCA+AGG | + | chr5_4:41679935-41679954 | None:intergenic | 55.0% | |
| ! | GAAGGCTTTTCCCCTGACGA+TGG | - | chr5_4:41680309-41680328 | Msa0851390:intron | 55.0% |
| !! | GAGGCATCGACTTCCCATTC+TGG | - | chr5_4:41680402-41680421 | Msa0851390:intron | 55.0% |
| ! | ATCGACTTCCCATTCTGGCC+AGG | - | chr5_4:41680407-41680426 | Msa0851390:intron | 55.0% |
| TCGACTTCCCATTCTGGCCA+GGG | - | chr5_4:41680408-41680427 | Msa0851390:intron | 55.0% | |
| GAAGTTCCCGATGCTGCTCT+TGG | + | chr5_4:41680492-41680511 | None:intergenic | 55.0% | |
| GGCATAAGCCGCCTCTTCTT+TGG | + | chr5_4:41681296-41681315 | None:intergenic | 55.0% | |
| TCCATGACTTCCACCGAAGG+AGG | + | chr5_4:41681317-41681336 | None:intergenic | 55.0% | |
| GGAGACCGATCTGGACACGT+TGG | - | chr5_4:41677598-41677617 | Msa0851390:CDS | 60.0% | |
| GAGGCGGCTTATGCCTCCTT+CGG | - | chr5_4:41681301-41681320 | Msa0851390:CDS | 60.0% | |
| GCCTCCTTCGGTGGAAGTCA+TGG | - | chr5_4:41681313-41681332 | Msa0851390:CDS | 60.0% | |
| GCGGCTTATGCCTCCTTCGG+TGG | - | chr5_4:41681304-41681323 | Msa0851390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 41676267 | 41681343 | 41676267 | ID=Msa0851390;Name=Msa0851390 |
| chr5_4 | mRNA | 41676267 | 41681343 | 41676267 | ID=Msa0851390-mRNA-1;Parent=Msa0851390;Name=Msa0851390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|11|0|768 |
| chr5_4 | exon | 41681247 | 41681343 | 41681247 | ID=Msa0851390-mRNA-1:exon:13174;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41680951 | 41681052 | 41680951 | ID=Msa0851390-mRNA-1:exon:13173;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41679895 | 41680055 | 41679895 | ID=Msa0851390-mRNA-1:exon:13172;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41679641 | 41679765 | 41679641 | ID=Msa0851390-mRNA-1:exon:13171;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41679389 | 41679520 | 41679389 | ID=Msa0851390-mRNA-1:exon:13170;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41678509 | 41678709 | 41678509 | ID=Msa0851390-mRNA-1:exon:13169;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41678370 | 41678425 | 41678370 | ID=Msa0851390-mRNA-1:exon:13168;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41678197 | 41678284 | 41678197 | ID=Msa0851390-mRNA-1:exon:13167;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41678019 | 41678112 | 41678019 | ID=Msa0851390-mRNA-1:exon:13166;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41677550 | 41677669 | 41677550 | ID=Msa0851390-mRNA-1:exon:13165;Parent=Msa0851390-mRNA-1 |
| chr5_4 | exon | 41676267 | 41677397 | 41676267 | ID=Msa0851390-mRNA-1:exon:13164;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41681247 | 41681343 | 41681247 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41680951 | 41681052 | 41680951 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41679895 | 41680055 | 41679895 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41679641 | 41679765 | 41679641 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41679389 | 41679520 | 41679389 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41678509 | 41678709 | 41678509 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41678370 | 41678425 | 41678370 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41678197 | 41678284 | 41678197 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41678019 | 41678112 | 41678019 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41677550 | 41677669 | 41677550 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| chr5_4 | CDS | 41676267 | 41677397 | 41676267 | ID=Msa0851390-mRNA-1:cds;Parent=Msa0851390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
