Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811270 | AES98251.1 | 60.067 | 889 | 160 | 17 | 1 | 700 | 1 | 883 | 0.0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811270 | sp|Q8L7S0|ULP2B_ARATH | 51.309 | 382 | 160 | 6 | 138 | 498 | 378 | 754 | 4.45e-109 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811270 | G7KBL6 | 60.067 | 889 | 160 | 17 | 1 | 700 | 1 | 883 | 0.0 | 927 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0811270 | 0.830485 | 2.859894e-55 | -8.615850e-47 |
| Msa0016570 | Msa0811270 | 0.806076 | 9.807068e-50 | -8.615850e-47 |
| Msa0016580 | Msa0811270 | 0.830787 | 2.412246e-55 | -8.615850e-47 |
| Msa0102070 | Msa0811270 | 0.812316 | 4.506936e-51 | -8.615850e-47 |
| Msa0110270 | Msa0811270 | 0.815241 | 1.022386e-51 | -8.615850e-47 |
| Msa0111510 | Msa0811270 | 0.801676 | 8.045205e-49 | -8.615850e-47 |
| Msa0604350 | Msa0811270 | 0.813828 | 2.100196e-51 | -8.615850e-47 |
| Msa0636170 | Msa0811270 | 0.809522 | 1.815507e-50 | -8.615850e-47 |
| Msa0639610 | Msa0811270 | 0.862520 | 4.780621e-64 | -8.615850e-47 |
| Msa0675830 | Msa0811270 | 0.803186 | 3.931391e-49 | -8.615850e-47 |
| Msa0701010 | Msa0811270 | 0.810950 | 8.934440e-51 | -8.615850e-47 |
| Msa0725850 | Msa0811270 | 0.800412 | 1.458973e-48 | -8.615850e-47 |
| Msa0726140 | Msa0811270 | 0.829468 | 5.062632e-55 | -8.615850e-47 |
| Msa0729800 | Msa0811270 | 0.839791 | 1.282666e-57 | -8.615850e-47 |
| Msa0732540 | Msa0811270 | 0.818708 | 1.702648e-52 | -8.615850e-47 |
| Msa0732710 | Msa0811270 | 0.835743 | 1.404690e-56 | -8.615850e-47 |
| Msa0733290 | Msa0811270 | 0.846821 | 1.706780e-59 | -8.615850e-47 |
| Msa0743810 | Msa0811270 | 0.867869 | 9.958968e-66 | -8.615850e-47 |
| Msa0745060 | Msa0811270 | 0.853020 | 3.148387e-61 | -8.615850e-47 |
| Msa0767720 | Msa0811270 | 0.839081 | 1.961205e-57 | -8.615850e-47 |
| Msa0768370 | Msa0811270 | 0.800607 | 1.331176e-48 | -8.615850e-47 |
| Msa0775300 | Msa0811270 | 0.889980 | 1.488876e-73 | -8.615850e-47 |
| Msa0777870 | Msa0811270 | 0.808082 | 3.687893e-50 | -8.615850e-47 |
| Msa0783160 | Msa0811270 | 0.840460 | 8.578622e-58 | -8.615850e-47 |
| Msa0784290 | Msa0811270 | 0.832526 | 8.992382e-56 | -8.615850e-47 |
| Msa0784300 | Msa0811270 | 0.816517 | 5.310328e-52 | -8.615850e-47 |
| Msa0787600 | Msa0811270 | 0.807860 | 4.113020e-50 | -8.615850e-47 |
| Msa0808010 | Msa0811270 | 0.834405 | 3.054921e-56 | -8.615850e-47 |
| Msa0808020 | Msa0811270 | 0.829314 | 5.518077e-55 | -8.615850e-47 |
| Msa0811080 | Msa0811270 | 0.838747 | 2.392607e-57 | -8.615850e-47 |
| Msa0811270 | Msa0824600 | 0.818351 | 2.051224e-52 | -8.615850e-47 |
| Msa0811270 | Msa0825860 | 0.845091 | 5.039708e-59 | -8.615850e-47 |
| Msa0811270 | Msa0845930 | 0.804230 | 2.386352e-49 | -8.615850e-47 |
| Msa0811270 | Msa0846330 | 0.822772 | 1.981020e-53 | -8.615850e-47 |
| Msa0811270 | Msa0846350 | 0.847112 | 1.420837e-59 | -8.615850e-47 |
| Msa0811270 | Msa0848960 | 0.809514 | 1.822829e-50 | -8.615850e-47 |
| Msa0811270 | Msa0851390 | 0.887974 | 8.898123e-73 | -8.615850e-47 |
| Msa0811270 | Msa0858980 | 0.816636 | 4.993511e-52 | -8.615850e-47 |
| Msa0811270 | Msa0864070 | 0.820277 | 7.469135e-53 | -8.615850e-47 |
| Msa0811270 | Msa0865320 | 0.829664 | 4.536042e-55 | -8.615850e-47 |
| Msa0811270 | Msa0873460 | 0.802075 | 6.662547e-49 | -8.615850e-47 |
| Msa0811270 | Msa0877250 | 0.820073 | 8.316032e-53 | -8.615850e-47 |
| Msa0811270 | Msa0885290 | 0.819884 | 9.184120e-53 | -8.615850e-47 |
| Msa0811270 | Msa0888370 | 0.840087 | 1.073709e-57 | -8.615850e-47 |
| Msa0811270 | Msa0896080 | 0.806789 | 6.936880e-50 | -8.615850e-47 |
| Msa0811270 | Msa0899430 | 0.820245 | 7.593947e-53 | -8.615850e-47 |
| Msa0811270 | Msa0899450 | 0.820933 | 5.277684e-53 | -8.615850e-47 |
| Msa0811270 | Msa0954910 | 0.803279 | 3.760783e-49 | -8.615850e-47 |
| Msa0811270 | Msa0958550 | 0.816215 | 6.203960e-52 | -8.615850e-47 |
| Msa0811270 | Msa0979410 | 0.803846 | 2.868002e-49 | -8.615850e-47 |
| Msa0811270 | Msa0989060 | 0.823492 | 1.345409e-53 | -8.615850e-47 |
| Msa0811270 | Msa1014540 | 0.802428 | 5.636736e-49 | -8.615850e-47 |
| Msa0811270 | Msa1016280 | 0.838514 | 2.748046e-57 | -8.615850e-47 |
| Msa0811270 | Msa1023050 | 0.827751 | 1.315657e-54 | -8.615850e-47 |
| Msa0811270 | Msa1024240 | 0.807769 | 4.299314e-50 | -8.615850e-47 |
| Msa0811270 | Msa1025360 | 0.846279 | 2.399582e-59 | -8.615850e-47 |
| Msa0811270 | Msa1025370 | 0.838464 | 2.831257e-57 | -8.615850e-47 |
| Msa0811270 | Msa1044830 | 0.837108 | 6.315425e-57 | -8.615850e-47 |
| Msa0811270 | Msa1044840 | 0.853236 | 2.730702e-61 | -8.615850e-47 |
| Msa0811270 | Msa1060840 | 0.812734 | 3.652022e-51 | -8.615850e-47 |
| Msa0811270 | Msa1087490 | 0.806392 | 8.412390e-50 | -8.615850e-47 |
| Msa0811270 | Msa1092990 | 0.873992 | 9.560948e-68 | -8.615850e-47 |
| Msa0811270 | Msa1100980 | 0.850328 | 1.822737e-60 | -8.615850e-47 |
| Msa0811270 | Msa1109440 | 0.820223 | 7.683030e-53 | -8.615850e-47 |
| Msa0811270 | Msa1117150 | 0.806854 | 6.719870e-50 | -8.615850e-47 |
| Msa0811270 | Msa1121200 | 0.818089 | 2.351376e-52 | -8.615850e-47 |
| Msa0811270 | Msa1121480 | 0.819774 | 9.736218e-53 | -8.615850e-47 |
| Msa0811270 | Msa1135220 | 0.837414 | 5.272998e-57 | -8.615850e-47 |
| Msa0811270 | Msa1135740 | 0.828653 | 7.975970e-55 | -8.615850e-47 |
| Msa0811270 | Msa1146100 | 0.801977 | 6.979090e-49 | -8.615850e-47 |
| Msa0811270 | Msa1146110 | 0.824164 | 9.359655e-54 | -8.615850e-47 |
| Msa0811270 | Msa1173920 | 0.802505 | 5.433914e-49 | -8.615850e-47 |
| Msa0811270 | Msa1187940 | 0.832299 | 1.023124e-55 | -8.615850e-47 |
| Msa0811270 | Msa1187950 | 0.836573 | 8.644279e-57 | -8.615850e-47 |
| Msa0811270 | Msa1192640 | 0.830512 | 2.816622e-55 | -8.615850e-47 |
| Msa0811270 | Msa1193730 | 0.811331 | 7.386539e-51 | -8.615850e-47 |
| Msa0811270 | Msa1230430 | 0.805949 | 1.042915e-49 | -8.615850e-47 |
| Msa0811270 | Msa1248310 | 0.801594 | 8.362887e-49 | -8.615850e-47 |
| Msa0811270 | Msa1269670 | 0.842618 | 2.316045e-58 | -8.615850e-47 |
| Msa0811270 | Msa1270230 | 0.849336 | 3.452871e-60 | -8.615850e-47 |
| Msa0811270 | Msa1270240 | 0.852041 | 5.987333e-61 | -8.615850e-47 |
| Msa0811270 | Msa1270270 | 0.829939 | 3.886777e-55 | -8.615850e-47 |
| Msa0811270 | Msa1283330 | 0.862728 | 4.126119e-64 | -8.615850e-47 |
| Msa0811270 | Msa1284680 | 0.814247 | 1.697481e-51 | -8.615850e-47 |
| Msa0811270 | Msa1285930 | 0.838457 | 2.843650e-57 | -8.615850e-47 |
| Msa0811270 | Msa1287800 | 0.823875 | 1.094464e-53 | -8.615850e-47 |
| Msa0811270 | Msa1287810 | 0.842158 | 3.067064e-58 | -8.615850e-47 |
| Msa0811270 | Msa1289420 | 0.805303 | 1.424874e-49 | -8.615850e-47 |
| Msa0811270 | Msa1289430 | 0.811044 | 8.522019e-51 | -8.615850e-47 |
| Msa0811270 | Msa1310120 | 0.802358 | 5.827822e-49 | -8.615850e-47 |
| Msa0811270 | Msa1314280 | 0.803179 | 3.943519e-49 | -8.615850e-47 |
| Msa0811270 | Msa1320300 | 0.848354 | 6.466410e-60 | -8.615850e-47 |
| Msa0811270 | Msa1321560 | 0.807275 | 5.472630e-50 | -8.615850e-47 |
| Msa0811270 | Msa1340590 | 0.848307 | 6.663610e-60 | -8.615850e-47 |
| Msa0811270 | Msa1369430 | 0.824555 | 7.573646e-54 | -8.615850e-47 |
| Msa0811270 | Msa1382690 | 0.809397 | 1.931329e-50 | -8.615850e-47 |
| Msa0811270 | Msa1386330 | 0.810865 | 9.317181e-51 | -8.615850e-47 |
| Msa0811270 | Msa1397580 | 0.843495 | 1.352799e-58 | -8.615850e-47 |
| Msa0811270 | Msa1402790 | 0.817505 | 3.185250e-52 | -8.615850e-47 |
| Msa0811270 | Msa1404000 | 0.826564 | 2.532188e-54 | -8.615850e-47 |
| Msa0811270 | Msa1408780 | 0.811246 | 7.704769e-51 | -8.615850e-47 |
| Msa0811270 | Msa1415310 | 0.821163 | 4.672799e-53 | -8.615850e-47 |
| Msa0811270 | Msa1422180 | 0.825374 | 4.853193e-54 | -8.615850e-47 |
| Msa0811270 | Msa1433120 | 0.800937 | 1.139999e-48 | -8.615850e-47 |
| Msa0142220 | Msa0811270 | 0.825830 | 3.785267e-54 | -8.615850e-47 |
| Msa0145750 | Msa0811270 | 0.810751 | 9.862426e-51 | -8.615850e-47 |
| Msa0200000 | Msa0811270 | 0.817118 | 3.892043e-52 | -8.615850e-47 |
| Msa0227480 | Msa0811270 | 0.839733 | 1.328039e-57 | -8.615850e-47 |
| Msa0232850 | Msa0811270 | 0.849325 | 3.476025e-60 | -8.615850e-47 |
| Msa0365500 | Msa0811270 | 0.830530 | 2.788209e-55 | -8.615850e-47 |
| Msa0384800 | Msa0811270 | 0.819966 | 8.798836e-53 | -8.615850e-47 |
| Msa0384890 | Msa0811270 | 0.811864 | 5.655734e-51 | -8.615850e-47 |
| Msa0414410 | Msa0811270 | 0.813846 | 2.081253e-51 | -8.615850e-47 |
| Msa0414420 | Msa0811270 | 0.837549 | 4.869168e-57 | -8.615850e-47 |
| Msa0435230 | Msa0811270 | 0.818740 | 1.674121e-52 | -8.615850e-47 |
| Msa0436780 | Msa0811270 | 0.808807 | 2.583153e-50 | -8.615850e-47 |
| Msa0438620 | Msa0811270 | 0.801693 | 7.984385e-49 | -8.615850e-47 |
| Msa0450000 | Msa0811270 | 0.858363 | 8.671253e-63 | -8.615850e-47 |
| Msa0450570 | Msa0811270 | 0.803667 | 3.125493e-49 | -8.615850e-47 |
| Msa0451730 | Msa0811270 | 0.835022 | 2.136447e-56 | -8.615850e-47 |
| Msa0452900 | Msa0811270 | 0.843922 | 1.040096e-58 | -8.615850e-47 |
| Msa0453120 | Msa0811270 | 0.829544 | 4.851970e-55 | -8.615850e-47 |
| Msa0454910 | Msa0811270 | 0.806655 | 7.403903e-50 | -8.615850e-47 |
| Msa0479340 | Msa0811270 | 0.816861 | 4.445729e-52 | -8.615850e-47 |
| Msa0267000 | Msa0811270 | 0.848539 | 5.745198e-60 | -8.615850e-47 |
| Msa0267010 | Msa0811270 | 0.859483 | 4.009680e-63 | -8.615850e-47 |
| Msa0270520 | Msa0811270 | 0.811073 | 8.399207e-51 | -8.615850e-47 |
| Msa0304170 | Msa0811270 | 0.808739 | 2.670964e-50 | -8.615850e-47 |
| Msa0306460 | Msa0811270 | 0.815330 | 9.772748e-52 | -8.615850e-47 |
| Msa0342240 | Msa0811270 | 0.816870 | 4.425956e-52 | -8.615850e-47 |
| Msa0360510 | Msa0811270 | 0.803431 | 3.497386e-49 | -8.615850e-47 |
| Msa0491590 | Msa0811270 | 0.818065 | 2.381176e-52 | -8.615850e-47 |
| Msa0502760 | Msa0811270 | 0.831263 | 1.843541e-55 | -8.615850e-47 |
| Msa0506270 | Msa0811270 | 0.818912 | 1.529798e-52 | -8.615850e-47 |
| Msa0518540 | Msa0811270 | 0.802652 | 5.068419e-49 | -8.615850e-47 |
| Msa0564890 | Msa0811270 | 0.820538 | 6.504385e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811270 | MtrunA17_Chr3g0132991 | 48.807 | 545 | 244 | 13 | 139 | 667 | 380 | 905 | 1.40e-139 | 434 |
| Msa0811270 | MtrunA17_Chr5g0427421 | 49.028 | 463 | 178 | 13 | 261 | 700 | 1 | 428 | 5.65e-110 | 339 |
| Msa0811270 | MtrunA17_Chr2g0279601 | 58.687 | 259 | 104 | 2 | 138 | 394 | 381 | 638 | 3.44e-96 | 318 |
| Msa0811270 | MtrunA17_Chr5g0427691 | 94.444 | 90 | 5 | 0 | 279 | 368 | 1 | 90 | 1.17e-54 | 182 |
| Msa0811270 | MtrunA17_Chr5g0427681 | 92.553 | 94 | 7 | 0 | 607 | 700 | 1 | 94 | 6.70e-54 | 180 |
| Msa0811270 | MtrunA17_Chr8g0365341 | 29.794 | 339 | 202 | 13 | 132 | 448 | 288 | 612 | 7.52e-36 | 144 |
| Msa0811270 | MtrunA17_Chr2g0295891 | 27.358 | 212 | 115 | 10 | 154 | 356 | 261 | 442 | 6.21e-17 | 84.3 |
| Msa0811270 | MtrunA17_Chr4g0067411 | 25.507 | 345 | 190 | 16 | 43 | 356 | 161 | 469 | 2.35e-16 | 82.4 |
| Msa0811270 | MtrunA17_Chr3g0116361 | 26.471 | 204 | 126 | 7 | 170 | 372 | 91 | 271 | 1.70e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811270 | AT1G09730.2 | 51.309 | 382 | 160 | 6 | 138 | 498 | 378 | 754 | 4.53e-110 | 355 |
| Msa0811270 | AT1G09730.1 | 51.309 | 382 | 160 | 6 | 138 | 498 | 410 | 786 | 1.02e-109 | 355 |
| Msa0811270 | AT4G33620.1 | 54.688 | 256 | 112 | 3 | 141 | 395 | 292 | 544 | 2.85e-85 | 285 |
| Msa0811270 | AT1G60220.1 | 30.070 | 286 | 170 | 10 | 117 | 391 | 310 | 576 | 3.22e-33 | 135 |
| Msa0811270 | AT1G10570.3 | 33.840 | 263 | 143 | 10 | 144 | 391 | 186 | 432 | 9.19e-32 | 129 |
| Msa0811270 | AT1G10570.1 | 33.840 | 263 | 143 | 10 | 144 | 391 | 317 | 563 | 4.39e-31 | 129 |
| Msa0811270 | AT1G10570.2 | 33.840 | 263 | 143 | 10 | 144 | 391 | 316 | 562 | 4.51e-31 | 129 |
| Msa0811270 | AT4G15880.1 | 29.474 | 190 | 100 | 8 | 164 | 347 | 298 | 459 | 2.44e-20 | 95.5 |
| Msa0811270 | AT4G00690.1 | 26.190 | 210 | 120 | 9 | 154 | 356 | 139 | 320 | 3.41e-15 | 78.2 |
Find 134 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCCTCCTTCTAGGGTTT+TGG | 0.193745 | 5_3:+40393182 | Msa0811270:CDS |
| CATTTCAACATGTTCGTAAA+TGG | 0.204655 | 5_3:+40395947 | Msa0811270:CDS |
| CTTTCGAAAGCTGGCTGATA+TGG | 0.231272 | 5_3:+40395888 | Msa0811270:CDS |
| ATCTTACAATACTTGTAATA+TGG | 0.240983 | 5_3:+40397370 | Msa0811270:CDS |
| GGCGAAGTGGTTAATATTAA+TGG | 0.242841 | 5_3:+40396143 | Msa0811270:CDS |
| TGAACCAGTTTCCTCCTTCT+AGG | 0.272634 | 5_3:+40393175 | Msa0811270:CDS |
| GGCATAAGCCGCCTCTTCTT+TGG | 0.294099 | 5_3:-40398091 | None:intergenic |
| AGTTGGTGGTAACTTCAATT+TGG | 0.294760 | 5_3:+40394501 | Msa0811270:CDS |
| ACAGCATCTGGATCCCCTTT+TGG | 0.297980 | 5_3:-40395045 | None:intergenic |
| TCCCATGAGTTTCTCAGTTT+CGG | 0.301177 | 5_3:+40393246 | Msa0811270:CDS |
| GTGTCATTGATGTATGTATT+TGG | 0.314227 | 5_3:-40395102 | None:intergenic |
| TTGCAGGAGTCTCTCACTTT+TGG | 0.319621 | 5_3:+40393540 | Msa0811270:CDS |
| TACTTGTAATATGGTTCTTA+AGG | 0.339876 | 5_3:+40397379 | Msa0811270:CDS |
| ACTTACAAAGTTGGAACAAT+TGG | 0.340942 | 5_3:-40396968 | None:intergenic |
| TGGCATTAATTCATCCAGTT+TGG | 0.343326 | 5_3:+40394780 | Msa0811270:CDS |
| CACAAACTTGTCTATCCAAA+AGG | 0.356318 | 5_3:+40395030 | Msa0811270:CDS |
| GTTTGCAAATTATCAGTTGC+AGG | 0.359014 | 5_3:+40393524 | Msa0811270:CDS |
| TAGAGTTGGTGTCCCTTGAT+AGG | 0.376140 | 5_3:-40397966 | None:intergenic |
| GAGGCATCGACTTCCCATTC+TGG | 0.377856 | 5_3:+40397326 | Msa0811270:CDS |
| GCAGATTTGCCGTCACAATC+AGG | 0.387491 | 5_3:-40395925 | None:intergenic |
| TGCAATATCAGACTCCAAAC+TGG | 0.388848 | 5_3:-40394794 | None:intergenic |
| TTACTTAGCGTAACAGCATC+TGG | 0.392707 | 5_3:-40395057 | None:intergenic |
| TAAGCAAGACATACCTCAAC+GGG | 0.393152 | 5_3:-40396507 | None:intergenic |
| CTCAGAGGGTTGAAATCAAA+TGG | 0.405785 | 5_3:-40396940 | None:intergenic |
| ATTTGAAGAGGCAATATCAT+TGG | 0.408710 | 5_3:-40393217 | None:intergenic |
| ACAGTTATTTGTCTGAAGAA+TGG | 0.412320 | 5_3:+40396418 | Msa0811270:intron |
| CCGTACGTTAATATTTGAAC+TGG | 0.421646 | 5_3:+40397190 | Msa0811270:CDS |
| TCTATCAAGGGACATCATAA+TGG | 0.422280 | 5_3:+40396294 | Msa0811270:CDS |
| TGCTGGTTATCACCATCGTC+AGG | 0.422984 | 5_3:-40397245 | None:intergenic |
| CAGAATATATTGACAACAAC+AGG | 0.426234 | 5_3:+40397273 | Msa0811270:CDS |
| GAGAGGAAGAATGATACATA+TGG | 0.426271 | 5_3:+40396444 | Msa0811270:CDS |
| TTCTATTCCCTGGCCAGAAT+GGG | 0.426921 | 5_3:-40397339 | None:intergenic |
| GAACCAGTTTCCTCCTTCTA+GGG | 0.435655 | 5_3:+40393176 | Msa0811270:CDS |
| TGAGTACTGGCAACAAGAAT+TGG | 0.437010 | 5_3:+40397930 | Msa0811270:CDS |
| ACTACCATGTATATTGCATA+TGG | 0.439313 | 5_3:+40396269 | Msa0811270:CDS |
| AAACCCTAGAAGGAGGAAAC+TGG | 0.440339 | 5_3:-40393179 | None:intergenic |
| CTTCAATTTGGAGACCGATC+TGG | 0.445381 | 5_3:+40394513 | Msa0811270:CDS |
| AGAGATTCCAAAACCCTAGA+AGG | 0.447367 | 5_3:-40393189 | None:intergenic |
| TTGTTCGCTGGTCAAAAGAT+TGG | 0.452884 | 5_3:-40397574 | None:intergenic |
| GAAGTTCCCGATGCTGCTCT+TGG | 0.453192 | 5_3:-40397413 | None:intergenic |
| GACGAGGTCATTGATGTTGA+TGG | 0.454665 | 5_3:+40394478 | Msa0811270:intron |
| TTTCTATTCCCTGGCCAGAA+TGG | 0.454940 | 5_3:-40397340 | None:intergenic |
| ATTGCATATGGATTCTATCA+AGG | 0.462706 | 5_3:+40396281 | Msa0811270:CDS |
| ACAAACTTGTCTATCCAAAA+GGG | 0.462924 | 5_3:+40395031 | Msa0811270:CDS |
| TTAATAGTGATTTGTTATCC+TGG | 0.465013 | 5_3:+40396122 | Msa0811270:CDS |
| GCCATGTTGGCAGACATCAC+TGG | 0.466901 | 5_3:+40396096 | Msa0811270:intron |
| GTTACTTACTTGAAGTTCAC+AGG | 0.468600 | 5_3:-40396012 | None:intergenic |
| ATCGACTTCCCATTCTGGCC+AGG | 0.472305 | 5_3:+40397331 | Msa0811270:CDS |
| ATGATCGTTGGTCAAAAGAT+TGG | 0.477039 | 5_3:-40397826 | None:intergenic |
| GCCTCCTTCGGTGGAAGTCA+TGG | 0.478566 | 5_3:+40398111 | Msa0811270:CDS |
| GGATAGACAAGTTTGTGAAA+AGG | 0.479008 | 5_3:-40395024 | None:intergenic |
| ATGGAAACATTTCTATTCCC+TGG | 0.483194 | 5_3:-40397349 | None:intergenic |
| TACGTTAATATTTGAACTGG+TGG | 0.485813 | 5_3:+40397193 | Msa0811270:CDS |
| GAGACCGATCTGGACACGTT+GGG | 0.487778 | 5_3:+40394523 | Msa0811270:CDS |
| ATATCAATGAGAGGATCAAC+CGG | 0.488383 | 5_3:-40397887 | None:intergenic |
| ATAAGCCGCCTCTTCTTTGG+AGG | 0.492336 | 5_3:-40398088 | None:intergenic |
| TATCCACACTTATCCTATCA+AGG | 0.495098 | 5_3:+40397953 | Msa0811270:CDS |
| CACTCGAATATGATGAGTAC+TGG | 0.495135 | 5_3:+40397917 | Msa0811270:CDS |
| GAGGCGGCTTATGCCTCCTT+CGG | 0.495331 | 5_3:+40398099 | Msa0811270:CDS |
| GTGAAAACCACTTACAAAGT+TGG | 0.496585 | 5_3:-40396977 | None:intergenic |
| CAATATATTCTGAGCAGTGC+TGG | 0.499295 | 5_3:-40397262 | None:intergenic |
| ATGTTCGCTGGTCAAAAGAT+TGG | 0.500143 | 5_3:-40397511 | None:intergenic |
| TTTGAACCAAGAGCAGCATC+GGG | 0.506018 | 5_3:+40397407 | Msa0811270:CDS |
| ATGATTGCTGGTCAAAAGAT+TGG | 0.512316 | 5_3:-40397448 | None:intergenic |
| GTCATTGATGTTGATGGAGT+TGG | 0.516986 | 5_3:+40394484 | Msa0811270:CDS |
| TGTGGACTGGTTTCCACCTA+CGG | 0.519375 | 5_3:+40397142 | Msa0811270:CDS |
| TAAGATAGAAGAGAAGCAAA+AGG | 0.525918 | 5_3:+40395837 | Msa0811270:CDS |
| AAGAGGCAATATCATTGGAA+TGG | 0.526389 | 5_3:-40393212 | None:intergenic |
| TTAATATTAACCACTTCGCC+AGG | 0.527512 | 5_3:-40396140 | None:intergenic |
| GAAAACCATGGTTCACATGA+AGG | 0.530457 | 5_3:+40397215 | Msa0811270:CDS |
| ATCTTCGTTACAGTCAAGTC+AGG | 0.533835 | 5_3:+40394618 | Msa0811270:CDS |
| ATTGACAACAACAGGATTGG+TGG | 0.535711 | 5_3:+40397281 | Msa0811270:CDS |
| TTGCATATGGATTCTATCAA+GGG | 0.537748 | 5_3:+40396282 | Msa0811270:CDS |
| TACCGAAACTGAGAAACTCA+TGG | 0.541502 | 5_3:-40393248 | None:intergenic |
| ACATGATGCATTTGTAGAGT+TGG | 0.541673 | 5_3:-40397980 | None:intergenic |
| TATATTGACAACAACAGGAT+TGG | 0.544673 | 5_3:+40397278 | Msa0811270:CDS |
| AACAATTGGTTAGTCTCAGA+GGG | 0.551951 | 5_3:-40396954 | None:intergenic |
| ACCGAAACTGAGAAACTCAT+GGG | 0.552514 | 5_3:-40393247 | None:intergenic |
| CAGATTTGCCGTCACAATCA+GGG | 0.553501 | 5_3:-40395924 | None:intergenic |
| TGTCTGAAGAATGGAAAGAG+AGG | 0.554930 | 5_3:+40396427 | Msa0811270:CDS |
| TCATTATCTAGAGCTCTTCG+TGG | 0.558865 | 5_3:+40396909 | Msa0811270:CDS |
| ATTGATGTTGATGGAGTTGG+TGG | 0.561060 | 5_3:+40394487 | Msa0811270:CDS |
| CAAGAAAACTCATTTGATTG+TGG | 0.562524 | 5_3:+40396874 | Msa0811270:CDS |
| GCGGCTTATGCCTCCTTCGG+TGG | 0.564699 | 5_3:+40398102 | Msa0811270:CDS |
| GCTGGAATCTCTCAATTCGA+TGG | 0.566606 | 5_3:+40393482 | Msa0811270:CDS |
| TAGAAGAGAAGCAAAAGGCT+AGG | 0.566794 | 5_3:+40395842 | Msa0811270:CDS |
| TCGACTTCCCATTCTGGCCA+GGG | 0.568090 | 5_3:+40397332 | Msa0811270:CDS |
| ATATTACAAGTATTGTAAGA+TGG | 0.575254 | 5_3:-40397368 | None:intergenic |
| TCATATGAAGTAATGATCGT+TGG | 0.582348 | 5_3:-40397838 | None:intergenic |
| GTCTGAAAGACCTTGTGCAA+AGG | 0.583698 | 5_3:+40396316 | Msa0811270:CDS |
| CCAGTTCAAATATTAACGTA+CGG | 0.591408 | 5_3:-40397190 | None:intergenic |
| GCTTCCCAACGTGTCCAGAT+CGG | 0.592976 | 5_3:-40394527 | None:intergenic |
| AGGAGGAAACTGGTTCATCA+TGG | 0.593600 | 5_3:-40393169 | None:intergenic |
| TTGCCGTCACAATCAGGGTG+GGG | 0.594456 | 5_3:-40395919 | None:intergenic |
| GCATATTTCAGACAAAGAGC+CGG | 0.603949 | 5_3:+40396239 | Msa0811270:intron |
| ATGAGAGACCTCCAAAGAAG+AGG | 0.609720 | 5_3:+40398080 | Msa0811270:CDS |
| GCTGGTTATCACCATCGTCA+GGG | 0.613048 | 5_3:-40397244 | None:intergenic |
| TTTGCCGTCACAATCAGGGT+GGG | 0.613309 | 5_3:-40395920 | None:intergenic |
| TTTGAACTGGTGGAAAACCA+TGG | 0.618826 | 5_3:+40397203 | Msa0811270:CDS |
| TCCATGACTTCCACCGAAGG+AGG | 0.619807 | 5_3:-40398112 | None:intergenic |
| GAACAATTGGTTAGTCTCAG+AGG | 0.620039 | 5_3:-40396955 | None:intergenic |
| ATCCACACTTATCCTATCAA+GGG | 0.620082 | 5_3:+40397954 | Msa0811270:CDS |
| GAATCCATATGCAATATACA+TGG | 0.622872 | 5_3:-40396273 | None:intergenic |
| GATTCCAAAACCCTAGAAGG+AGG | 0.624471 | 5_3:-40393186 | None:intergenic |
| TAGATGATGATATTGTTCGC+TGG | 0.628353 | 5_3:-40397586 | None:intergenic |
| GGAGACCGATCTGGACACGT+TGG | 0.628953 | 5_3:+40394522 | Msa0811270:CDS |
| TTGAGATAAGCATCCGTAGG+TGG | 0.629538 | 5_3:-40397155 | None:intergenic |
| AAAAGCCTTCATGTGAACCA+TGG | 0.631459 | 5_3:-40397220 | None:intergenic |
| TAGATGATGATAATGATCGC+TGG | 0.636105 | 5_3:-40397649 | None:intergenic |
| TAGATGATGATAATGATCGC+TGG | 0.636105 | 5_3:-40397712 | None:intergenic |
| TAGATGATGATAATGATCGC+TGG | 0.636105 | 5_3:-40397775 | None:intergenic |
| CGCTTGAGATAAGCATCCGT+AGG | 0.636755 | 5_3:-40397158 | None:intergenic |
| AATCCCCACCCTGATTGTGA+CGG | 0.637758 | 5_3:+40395916 | Msa0811270:CDS |
| CAAACTTGTCTATCCAAAAG+GGG | 0.646120 | 5_3:+40395032 | Msa0811270:CDS |
| GATTCCATGACTTCCACCGA+AGG | 0.647073 | 5_3:-40398115 | None:intergenic |
| TGTTGAGAAATATCAATGAG+AGG | 0.651346 | 5_3:-40397896 | None:intergenic |
| ATGATCGCTGGTCAAAAGAG+TGG | 0.651671 | 5_3:-40397637 | None:intergenic |
| ATGATCGCTGGTCAAAAGAG+TGG | 0.651671 | 5_3:-40397700 | None:intergenic |
| ATGATCGCTGGTCAAAAGAG+TGG | 0.651671 | 5_3:-40397763 | None:intergenic |
| TATTCAAGAATCTTGATGAG+AGG | 0.651763 | 5_3:-40396473 | None:intergenic |
| CTGGTTATCACCATCGTCAG+GGG | 0.651767 | 5_3:-40397243 | None:intergenic |
| AGAGACCTCCAAAGAAGAGG+CGG | 0.652837 | 5_3:+40398083 | Msa0811270:CDS |
| GATTTGTTATCCTGGCGAAG+TGG | 0.654014 | 5_3:+40396130 | Msa0811270:CDS |
| TTAAGAAATACCTTTGCACA+AGG | 0.654793 | 5_3:-40396326 | None:intergenic |
| TAGATGATGATAATGTTCGC+TGG | 0.655576 | 5_3:-40397523 | None:intergenic |
| ATGGGATTGAGAATTTGAAG+AGG | 0.659303 | 5_3:-40393229 | None:intergenic |
| GTGTCATTTATTCAACGTGG+AGG | 0.663555 | 5_3:+40397307 | Msa0811270:CDS |
| GTCCCTTGATAGGATAAGTG+TGG | 0.675915 | 5_3:-40397956 | None:intergenic |
| ATTTGCCGTCACAATCAGGG+TGG | 0.676872 | 5_3:-40395921 | None:intergenic |
| GTAAGCAAGACATACCTCAA+CGG | 0.678921 | 5_3:-40396508 | None:intergenic |
| TCAGTGTCATTTATTCAACG+TGG | 0.715574 | 5_3:+40397304 | Msa0811270:CDS |
| GCTGTGAAACAAGATACTAG+TGG | 0.751401 | 5_3:+40394589 | Msa0811270:CDS |
| GTGAAACAAGATACTAGTGG+TGG | 0.802443 | 5_3:+40394592 | Msa0811270:CDS |
| AAGCAAGACATACCTCAACG+GGG | 0.831878 | 5_3:-40396506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAATAAAAAATTTC+GGG | - | chr5_3:40393595-40393614 | None:intergenic | 10.0% |
| !! | TTAAAAATTACAAATTGATT+TGG | - | chr5_3:40394204-40394223 | None:intergenic | 10.0% |
| !! | TTAAGTTATATTATTTCAAT+TGG | + | chr5_3:40397045-40397064 | Msa0811270:intron | 10.0% |
| !! | GAATCATTAAAATAATTGAT+TGG | + | chr5_3:40394122-40394141 | Msa0811270:intron | 15.0% |
| !! | TATAATTAACTAAAATCAGA+AGG | + | chr5_3:40394169-40394188 | Msa0811270:intron | 15.0% |
| !!! | TATATGCATTTATTTTTGTA+TGG | - | chr5_3:40394333-40394352 | None:intergenic | 15.0% |
| !!! | AAAAATCTTTTTGAAATCAA+TGG | - | chr5_3:40394557-40394576 | None:intergenic | 15.0% |
| !! | AAAAAATATTTACAACGTTA+TGG | + | chr5_3:40394903-40394922 | Msa0811270:intron | 15.0% |
| !! | AAGTTATTAACATTACAATT+TGG | - | chr5_3:40395461-40395480 | None:intergenic | 15.0% |
| !! | ATTGTAATGTTAATAACTTA+TGG | + | chr5_3:40395462-40395481 | Msa0811270:intron | 15.0% |
| !! | TTGTAATGTTAATAACTTAT+GGG | + | chr5_3:40395463-40395482 | Msa0811270:intron | 15.0% |
| !! | ATCTACTGTTAATAAAATAA+AGG | - | chr5_3:40395609-40395628 | None:intergenic | 15.0% |
| !!! | AAAGTCTTATTTTATCATTT+TGG | - | chr5_3:40395679-40395698 | None:intergenic | 15.0% |
| !! | AATATAAACAAACAGTTATA+TGG | + | chr5_3:40395732-40395751 | Msa0811270:intron | 15.0% |
| !!! | AACAATTTTGCAATAAAAAT+AGG | - | chr5_3:40396670-40396689 | None:intergenic | 15.0% |
| !!! | ATAACATTAATCTTGATTTT+TGG | + | chr5_3:40398056-40398075 | Msa0811270:CDS | 15.0% |
| !! | AAAAAACTCAAAAACTAACA+CGG | - | chr5_3:40393630-40393649 | None:intergenic | 20.0% |
| !! | TTGATAAAGATTCAAATAAG+AGG | + | chr5_3:40393800-40393819 | Msa0811270:intron | 20.0% |
| !! | TCATCATTAAAAGAATCAAT+TGG | + | chr5_3:40393863-40393882 | Msa0811270:intron | 20.0% |
| !! | TAATAATCTACTCAAAATTG+TGG | + | chr5_3:40393903-40393922 | Msa0811270:intron | 20.0% |
| !!! | TACTATTTTTCTGTTTAAGA+TGG | + | chr5_3:40394016-40394035 | Msa0811270:intron | 20.0% |
| !!! | ACTATTTTTCTGTTTAAGAT+GGG | + | chr5_3:40394017-40394036 | Msa0811270:intron | 20.0% |
| !!! | TCTTGAGTTGAAAAAATTTA+AGG | + | chr5_3:40394046-40394065 | Msa0811270:intron | 20.0% |
| !!! | CTTGAGTTGAAAAAATTTAA+GGG | + | chr5_3:40394047-40394066 | Msa0811270:intron | 20.0% |
| !! | TTACAAATAAAGTTTACCTT+AGG | - | chr5_3:40394685-40394704 | None:intergenic | 20.0% |
| !! | TAGAGATTTAGTTATATTGT+AGG | + | chr5_3:40394720-40394739 | Msa0811270:intron | 20.0% |
| !!! | TATTTTTTTGTACTTACTCT+TGG | - | chr5_3:40394891-40394910 | None:intergenic | 20.0% |
| !! | CAATAACAATATTAGAACTA+AGG | - | chr5_3:40395538-40395557 | None:intergenic | 20.0% |
| !! | AAAATAAGACTTTCAATATC+AGG | + | chr5_3:40395686-40395705 | Msa0811270:intron | 20.0% |
| !! | ACATTATAACTACTGAAAAA+TGG | + | chr5_3:40395765-40395784 | Msa0811270:intron | 20.0% |
| !! | CATTATAACTACTGAAAAAT+GGG | + | chr5_3:40395766-40395785 | Msa0811270:intron | 20.0% |
| !!! | CTGTTTAAAAATCTCAATTT+TGG | + | chr5_3:40395799-40395818 | Msa0811270:intron | 20.0% |
| !! | AGAAAAAACTATTGAAAAAG+TGG | - | chr5_3:40395870-40395889 | None:intergenic | 20.0% |
| !! | CTTAAAAAATATATATGGCT+AGG | - | chr5_3:40397030-40397049 | None:intergenic | 20.0% |
| !!! | ATATTACAAGTATTGTAAGA+TGG | - | chr5_3:40397371-40397390 | None:intergenic | 20.0% |
| !! | ATCTTACAATACTTGTAATA+TGG | + | chr5_3:40397370-40397389 | Msa0811270:CDS | 20.0% |
| ! | CAAAACACAAAAAAATCACA+AGG | - | chr5_3:40393344-40393363 | None:intergenic | 25.0% |
| ! | AACATCAGTAAATCAACAAT+AGG | - | chr5_3:40393424-40393443 | None:intergenic | 25.0% |
| !! | ATGATCAATGTTTTCAATCA+TGG | + | chr5_3:40393460-40393479 | Msa0811270:CDS | 25.0% |
| !!! | CTGAGTTGATAAAATTGAAA+TGG | + | chr5_3:40393755-40393774 | Msa0811270:intron | 25.0% |
| ! | TGTCAATGTAACATTAGATT+TGG | + | chr5_3:40393977-40393996 | Msa0811270:intron | 25.0% |
| ! | TCAAACTGAAATCTTCAATT+AGG | - | chr5_3:40394231-40394250 | None:intergenic | 25.0% |
| ! | AAAAGAATTGCAGAATGAAT+TGG | - | chr5_3:40394447-40394466 | None:intergenic | 25.0% |
| !! | CAAAAAGATTTTTGATGAGT+TGG | + | chr5_3:40394564-40394583 | Msa0811270:CDS | 25.0% |
| ! | ATTTGTAAGTTTACATCCTA+AGG | + | chr5_3:40394697-40394716 | Msa0811270:intron | 25.0% |
| ! | TATAACTAAATCTCTACCTT+AGG | - | chr5_3:40394716-40394735 | None:intergenic | 25.0% |
| !! | TTATACAGAGTTCTCTTTTT+GGG | + | chr5_3:40394926-40394945 | Msa0811270:intron | 25.0% |
| ! | TCTAGGCTTAATTAATGATT+TGG | + | chr5_3:40395214-40395233 | Msa0811270:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr5_3:40395494-40395513 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr5_3:40395493-40395512 | None:intergenic | 25.0% |
| ! | GCTAACATATACTAACTTAA+GGG | - | chr5_3:40395283-40395302 | None:intergenic | 25.0% |
| ! | TTTGACAGTAGAGATTTATT+TGG | + | chr5_3:40395411-40395430 | Msa0811270:intron | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr5_3:40395493-40395512 | Msa0811270:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr5_3:40395494-40395513 | Msa0811270:intron | 25.0% |
| !! | AATATTGTTATTGTGAACCT+TGG | + | chr5_3:40395545-40395564 | Msa0811270:intron | 25.0% |
| !! | TTCTGATTGGAATTCAATTT+TGG | + | chr5_3:40396074-40396093 | Msa0811270:intron | 25.0% |
| !!! | TTAATAGTGATTTGTTATCC+TGG | + | chr5_3:40396122-40396141 | Msa0811270:CDS | 25.0% |
| ! | TGTCATAATAGTTGACAAAA+TGG | - | chr5_3:40396401-40396420 | None:intergenic | 25.0% |
| ! | TTTCTTATTGCTCAATGAAA+TGG | + | chr5_3:40396583-40396602 | Msa0811270:intron | 25.0% |
| ! | AGAAAAATTCAACATATGTC+AGG | - | chr5_3:40397115-40397134 | None:intergenic | 25.0% |
| ! | TACTTGTAATATGGTTCTTA+AGG | + | chr5_3:40397379-40397398 | Msa0811270:CDS | 25.0% |
| !! | TACAGATACTATCAATTTTC+CGG | + | chr5_3:40397868-40397887 | Msa0811270:CDS | 25.0% |
| ATTTGAAGAGGCAATATCAT+TGG | - | chr5_3:40393220-40393239 | None:intergenic | 30.0% | |
| AAATCAACAATAGGATCATC+AGG | - | chr5_3:40393415-40393434 | None:intergenic | 30.0% | |
| !!! | CAAGCACACATTTTTTTTCA+AGG | - | chr5_3:40393783-40393802 | None:intergenic | 30.0% |
| TGATTCCAAATACAATGCTA+CGG | - | chr5_3:40393846-40393865 | None:intergenic | 30.0% | |
| GAATCAATTGGAATTTGATG+TGG | + | chr5_3:40393875-40393894 | Msa0811270:intron | 30.0% | |
| AATGTTAGAGGAATTGTGTT+TGG | + | chr5_3:40394100-40394119 | Msa0811270:intron | 30.0% | |
| AGAAATGAATTAGTGACTAG+TGG | + | chr5_3:40394253-40394272 | Msa0811270:intron | 30.0% | |
| GGTTCATATCTTTCAACTTA+TGG | + | chr5_3:40394274-40394293 | Msa0811270:intron | 30.0% | |
| AGGTATATTATGTCCCTTTA+GGG | + | chr5_3:40394638-40394657 | Msa0811270:intron | 30.0% | |
| ATTTGTGAGTTTACATCCTA+AGG | + | chr5_3:40394666-40394685 | Msa0811270:intron | 30.0% | |
| ! | TATGTCATTCTTTTTGCAGA+CGG | + | chr5_3:40394750-40394769 | Msa0811270:intron | 30.0% |
| AAATGTATTCCCTCGTAATA+TGG | + | chr5_3:40394819-40394838 | Msa0811270:intron | 30.0% | |
| ! | GTTATACAGAGTTCTCTTTT+TGG | + | chr5_3:40394925-40394944 | Msa0811270:intron | 30.0% |
| TCCAAAATGAAAACATTGTG+TGG | + | chr5_3:40394959-40394978 | Msa0811270:intron | 30.0% | |
| ! | ACCACACAATGTTTTCATTT+TGG | - | chr5_3:40394963-40394982 | None:intergenic | 30.0% |
| AAAATGAAAACATTGTGTGG+TGG | + | chr5_3:40394962-40394981 | Msa0811270:intron | 30.0% | |
| !! | TCATGTCTGAAACATTTTTC+AGG | + | chr5_3:40394999-40395018 | Msa0811270:intron | 30.0% |
| ACAAACTTGTCTATCCAAAA+GGG | + | chr5_3:40395031-40395050 | Msa0811270:CDS | 30.0% | |
| ! | GTGTCATTGATGTATGTATT+TGG | - | chr5_3:40395105-40395124 | None:intergenic | 30.0% |
| GTTACATTAACGTTACCATT+TGG | + | chr5_3:40395256-40395275 | Msa0811270:intron | 30.0% | |
| GGCTAACATATACTAACTTA+AGG | - | chr5_3:40395284-40395303 | None:intergenic | 30.0% | |
| ! | CTTTTGCCAAAACGTTAAAT+AGG | + | chr5_3:40395325-40395344 | Msa0811270:intron | 30.0% |
| GTAGAGATTTATTTGGTTGA+CGG | + | chr5_3:40395418-40395437 | Msa0811270:intron | 30.0% | |
| TTGACGGAAGATAACTTAAA+GGG | + | chr5_3:40395434-40395453 | Msa0811270:intron | 30.0% | |
| CTAAGGCTTAATTAATGATG+TGG | - | chr5_3:40395521-40395540 | None:intergenic | 30.0% | |
| TAAGATAGAAGAGAAGCAAA+AGG | + | chr5_3:40395837-40395856 | Msa0811270:CDS | 30.0% | |
| !!! | TAGTTTTTTCTTTCGAAAGC+TGG | + | chr5_3:40395879-40395898 | Msa0811270:CDS | 30.0% |
| CATTTCAACATGTTCGTAAA+TGG | + | chr5_3:40395947-40395966 | Msa0811270:CDS | 30.0% | |
| ! | ATCTGTATTGATGTTCTGAT+TGG | + | chr5_3:40396061-40396080 | Msa0811270:intron | 30.0% |
| ACTACCATGTATATTGCATA+TGG | + | chr5_3:40396269-40396288 | Msa0811270:CDS | 30.0% | |
| GAATCCATATGCAATATACA+TGG | - | chr5_3:40396276-40396295 | None:intergenic | 30.0% | |
| ATTGCATATGGATTCTATCA+AGG | + | chr5_3:40396281-40396300 | Msa0811270:CDS | 30.0% | |
| TTGCATATGGATTCTATCAA+GGG | + | chr5_3:40396282-40396301 | Msa0811270:CDS | 30.0% | |
| TTAAGAAATACCTTTGCACA+AGG | - | chr5_3:40396329-40396348 | None:intergenic | 30.0% | |
| AGAGAAGGAAATTTAATGTG+TGG | - | chr5_3:40396360-40396379 | None:intergenic | 30.0% | |
| CTGATAAGTTAAAGAAGAGA+AGG | - | chr5_3:40396375-40396394 | None:intergenic | 30.0% | |
| ACAGTTATTTGTCTGAAGAA+TGG | + | chr5_3:40396418-40396437 | Msa0811270:intron | 30.0% | |
| TATTCAAGAATCTTGATGAG+AGG | - | chr5_3:40396476-40396495 | None:intergenic | 30.0% | |
| !!! | TGGATTTCAGTTTTATTTGC+TGG | + | chr5_3:40396603-40396622 | Msa0811270:intron | 30.0% |
| ! | AAAATTGATTCCAAGTCACT+GGG | + | chr5_3:40396626-40396645 | Msa0811270:intron | 30.0% |
| CAAAGTATAGGCCAAATAAT+GGG | - | chr5_3:40396720-40396739 | None:intergenic | 30.0% | |
| ACAAAGTATAGGCCAAATAA+TGG | - | chr5_3:40396721-40396740 | None:intergenic | 30.0% | |
| TTCAAAAAGCGACAAAGTAT+AGG | - | chr5_3:40396732-40396751 | None:intergenic | 30.0% | |
| CAAGAAAACTCATTTGATTG+TGG | + | chr5_3:40396874-40396893 | Msa0811270:CDS | 30.0% | |
| CTAGATAATGAAGCAAAAAG+AGG | - | chr5_3:40396900-40396919 | None:intergenic | 30.0% | |
| ACTTACAAAGTTGGAACAAT+TGG | - | chr5_3:40396971-40396990 | None:intergenic | 30.0% | |
| AATTGTTCCAACTTTGTAAG+TGG | + | chr5_3:40396970-40396989 | Msa0811270:intron | 30.0% | |
| ! | AACTTTGTAAGTGGTTTTCA+CGG | + | chr5_3:40396979-40396998 | Msa0811270:intron | 30.0% |
| ATGGCTAGGAACAAAATAAT+TGG | - | chr5_3:40397016-40397035 | None:intergenic | 30.0% | |
| GATTCATATGGTTCCTTATA+TGG | + | chr5_3:40397083-40397102 | Msa0811270:intron | 30.0% | |
| TGTCAGGTTAAATCCATATA+AGG | - | chr5_3:40397099-40397118 | None:intergenic | 30.0% | |
| !!! | TGAATTTTTCTAGCTCAATG+TGG | + | chr5_3:40397124-40397143 | Msa0811270:intron | 30.0% |
| CCAGTTCAAATATTAACGTA+CGG | - | chr5_3:40397193-40397212 | None:intergenic | 30.0% | |
| TACGTTAATATTTGAACTGG+TGG | + | chr5_3:40397193-40397212 | Msa0811270:CDS | 30.0% | |
| CAGAATATATTGACAACAAC+AGG | + | chr5_3:40397273-40397292 | Msa0811270:CDS | 30.0% | |
| TATATTGACAACAACAGGAT+TGG | + | chr5_3:40397278-40397297 | Msa0811270:CDS | 30.0% | |
| TCATATGAAGTAATGATCGT+TGG | - | chr5_3:40397841-40397860 | None:intergenic | 30.0% | |
| TGTTGAGAAATATCAATGAG+AGG | - | chr5_3:40397899-40397918 | None:intergenic | 30.0% | |
| AAGAGGCAATATCATTGGAA+TGG | - | chr5_3:40393215-40393234 | None:intergenic | 35.0% | |
| ATGGGATTGAGAATTTGAAG+AGG | - | chr5_3:40393232-40393251 | None:intergenic | 35.0% | |
| ! | TCAATGTTTTCAATCATGGC+TGG | + | chr5_3:40393464-40393483 | Msa0811270:CDS | 35.0% |
| GTTTGCAAATTATCAGTTGC+AGG | + | chr5_3:40393524-40393543 | Msa0811270:CDS | 35.0% | |
| TGAAACCGTAGCATTGTATT+TGG | + | chr5_3:40393838-40393857 | Msa0811270:intron | 35.0% | |
| ACATTGACATCTCTTGCTTA+GGG | - | chr5_3:40393966-40393985 | None:intergenic | 35.0% | |
| TACATTGACATCTCTTGCTT+AGG | - | chr5_3:40393967-40393986 | None:intergenic | 35.0% | |
| !!! | CAAGCTCACTTTTGTTTTCA+TGG | - | chr5_3:40394075-40394094 | None:intergenic | 35.0% |
| CATGAAAACAAAAGTGAGCT+TGG | + | chr5_3:40394073-40394092 | Msa0811270:intron | 35.0% | |
| CCTCGACAATAAAAATCAAG+AGG | - | chr5_3:40394377-40394396 | None:intergenic | 35.0% | |
| ! | CCTCTTGATTTTTATTGTCG+AGG | + | chr5_3:40394374-40394393 | Msa0811270:intron | 35.0% |
| !! | GAATTGGAAGTACTAAAACG+TGG | - | chr5_3:40394431-40394450 | None:intergenic | 35.0% |
| !! | AGTTGGTGGTAACTTCAATT+TGG | + | chr5_3:40394501-40394520 | Msa0811270:CDS | 35.0% |
| CAGGTATATTATGTCCCTTT+AGG | + | chr5_3:40394637-40394656 | Msa0811270:intron | 35.0% | |
| TCACAAATTGAGACCCTAAA+GGG | - | chr5_3:40394654-40394673 | None:intergenic | 35.0% | |
| TGGCATTAATTCATCCAGTT+TGG | + | chr5_3:40394780-40394799 | Msa0811270:CDS | 35.0% | |
| GGATAGACAAGTTTGTGAAA+AGG | - | chr5_3:40395027-40395046 | None:intergenic | 35.0% | |
| CACAAACTTGTCTATCCAAA+AGG | + | chr5_3:40395030-40395049 | Msa0811270:CDS | 35.0% | |
| CAAACTTGTCTATCCAAAAG+GGG | + | chr5_3:40395032-40395051 | Msa0811270:CDS | 35.0% | |
| !! | CTTTGCTTGCATTTAGTTCT+AGG | + | chr5_3:40395197-40395216 | Msa0811270:intron | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr5_3:40395234-40395253 | Msa0811270:intron | 35.0% | |
| TACTAACTTAAGGGACCAAA+TGG | - | chr5_3:40395274-40395293 | None:intergenic | 35.0% | |
| ! | ACTGATGGTGAGGATTTATT+TGG | - | chr5_3:40395305-40395324 | None:intergenic | 35.0% |
| ! | CATGTGCCTATTTAACGTTT+TGG | - | chr5_3:40395334-40395353 | None:intergenic | 35.0% |
| GTTAAATAGGCACATGTGAA+CGG | + | chr5_3:40395338-40395357 | Msa0811270:intron | 35.0% | |
| GTTGACGGAAGATAACTTAA+AGG | + | chr5_3:40395433-40395452 | Msa0811270:intron | 35.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr5_3:40395234-40395253 | None:intergenic | 35.0% | |
| GTTACTTACTTGAAGTTCAC+AGG | - | chr5_3:40396015-40396034 | None:intergenic | 35.0% | |
| !! | GAATTCAATTTTGGCCATGT+TGG | + | chr5_3:40396083-40396102 | Msa0811270:intron | 35.0% |
| TTAATATTAACCACTTCGCC+AGG | - | chr5_3:40396143-40396162 | None:intergenic | 35.0% | |
| GGCGAAGTGGTTAATATTAA+TGG | + | chr5_3:40396143-40396162 | Msa0811270:CDS | 35.0% | |
| !! | ATACATGGTAGTGACTTTTC+CGG | - | chr5_3:40396261-40396280 | None:intergenic | 35.0% |
| TCTATCAAGGGACATCATAA+TGG | + | chr5_3:40396294-40396313 | Msa0811270:CDS | 35.0% | |
| GAGAGGAAGAATGATACATA+TGG | + | chr5_3:40396444-40396463 | Msa0811270:CDS | 35.0% | |
| ! | GAAAATTGATTCCAAGTCAC+TGG | + | chr5_3:40396625-40396644 | Msa0811270:intron | 35.0% |
| AAAATAGGCAACTTTCGTAG+TGG | - | chr5_3:40396655-40396674 | None:intergenic | 35.0% | |
| TGAATGCAAGTCCCATTATT+TGG | + | chr5_3:40396706-40396725 | Msa0811270:intron | 35.0% | |
| ! | ATTTATTTCTCGCCTATCTC+TGG | + | chr5_3:40396751-40396770 | Msa0811270:intron | 35.0% |
| ! | TCAAATGAGTTTTCTTGCTG+TGG | - | chr5_3:40396871-40396890 | None:intergenic | 35.0% |
| !! | AACAATTGGTTAGTCTCAGA+GGG | - | chr5_3:40396957-40396976 | None:intergenic | 35.0% |
| GTGAAAACCACTTACAAAGT+TGG | - | chr5_3:40396980-40396999 | None:intergenic | 35.0% | |
| TAACTCCCTAGTGATTCATA+TGG | + | chr5_3:40397071-40397090 | Msa0811270:intron | 35.0% | |
| AGGAACCATATGAATCACTA+GGG | - | chr5_3:40397079-40397098 | None:intergenic | 35.0% | |
| AAGGAACCATATGAATCACT+AGG | - | chr5_3:40397080-40397099 | None:intergenic | 35.0% | |
| CCGTACGTTAATATTTGAAC+TGG | + | chr5_3:40397190-40397209 | Msa0811270:CDS | 35.0% | |
| !! | TCAGTGTCATTTATTCAACG+TGG | + | chr5_3:40397304-40397323 | Msa0811270:CDS | 35.0% |
| ATGGAAACATTTCTATTCCC+TGG | - | chr5_3:40397352-40397371 | None:intergenic | 35.0% | |
| ATGATTGCTGGTCAAAAGAT+TGG | - | chr5_3:40397451-40397470 | None:intergenic | 35.0% | |
| ! | TAGATGATGATAATGTTCGC+TGG | - | chr5_3:40397526-40397545 | None:intergenic | 35.0% |
| TAGATGATGATATTGTTCGC+TGG | - | chr5_3:40397589-40397608 | None:intergenic | 35.0% | |
| ! | TAGATGATGATAATGATCGC+TGG | - | chr5_3:40397652-40397671 | None:intergenic | 35.0% |
| ! | TAGATGATGATAATGATCGC+TGG | - | chr5_3:40397652-40397671 | None:intergenic | 35.0% |
| ! | TAGATGATGATAATGATCGC+TGG | - | chr5_3:40397652-40397671 | None:intergenic | 35.0% |
| ATGATCGTTGGTCAAAAGAT+TGG | - | chr5_3:40397829-40397848 | None:intergenic | 35.0% | |
| ATATCAATGAGAGGATCAAC+CGG | - | chr5_3:40397890-40397909 | None:intergenic | 35.0% | |
| TATCCACACTTATCCTATCA+AGG | + | chr5_3:40397953-40397972 | Msa0811270:CDS | 35.0% | |
| ATCCACACTTATCCTATCAA+GGG | + | chr5_3:40397954-40397973 | Msa0811270:CDS | 35.0% | |
| ACATGATGCATTTGTAGAGT+TGG | - | chr5_3:40397983-40398002 | None:intergenic | 35.0% | |
| AGAGATTCCAAAACCCTAGA+AGG | - | chr5_3:40393192-40393211 | None:intergenic | 40.0% | |
| TCCCATGAGTTTCTCAGTTT+CGG | + | chr5_3:40393246-40393265 | Msa0811270:CDS | 40.0% | |
| ACCGAAACTGAGAAACTCAT+GGG | - | chr5_3:40393250-40393269 | None:intergenic | 40.0% | |
| TACCGAAACTGAGAAACTCA+TGG | - | chr5_3:40393251-40393270 | None:intergenic | 40.0% | |
| GAGCTTGGTAGAAATGTTAG+AGG | + | chr5_3:40394088-40394107 | Msa0811270:intron | 40.0% | |
| ! | GTCATTGATGTTGATGGAGT+TGG | + | chr5_3:40394484-40394503 | Msa0811270:CDS | 40.0% |
| ! | ATTGATGTTGATGGAGTTGG+TGG | + | chr5_3:40394487-40394506 | Msa0811270:CDS | 40.0% |
| GCTGTGAAACAAGATACTAG+TGG | + | chr5_3:40394589-40394608 | Msa0811270:CDS | 40.0% | |
| GTGAAACAAGATACTAGTGG+TGG | + | chr5_3:40394592-40394611 | Msa0811270:CDS | 40.0% | |
| ATCTTCGTTACAGTCAAGTC+AGG | + | chr5_3:40394618-40394637 | Msa0811270:CDS | 40.0% | |
| CTCACAAATTGAGACCCTAA+AGG | - | chr5_3:40394655-40394674 | None:intergenic | 40.0% | |
| ! | TTTTTGCAGACGGAATCAGT+TGG | + | chr5_3:40394760-40394779 | Msa0811270:intron | 40.0% |
| TGCAATATCAGACTCCAAAC+TGG | - | chr5_3:40394797-40394816 | None:intergenic | 40.0% | |
| ATTCCCTCGTAATATGGATG+TGG | + | chr5_3:40394825-40394844 | Msa0811270:intron | 40.0% | |
| CTTCCACATCCATATTACGA+GGG | - | chr5_3:40394831-40394850 | None:intergenic | 40.0% | |
| !! | TGGAAGTAGCTTGTTAGTCT+AGG | - | chr5_3:40394871-40394890 | None:intergenic | 40.0% |
| !!! | GAGTTCTCTTTTTGGGACAT+AGG | + | chr5_3:40394933-40394952 | Msa0811270:intron | 40.0% |
| TTACTTAGCGTAACAGCATC+TGG | - | chr5_3:40395060-40395079 | None:intergenic | 40.0% | |
| !! | ACGTTTTGGCAAAAGACTGA+TGG | - | chr5_3:40395320-40395339 | None:intergenic | 40.0% |
| TGTGTATCCACCTTAGACAT+TGG | + | chr5_3:40395379-40395398 | Msa0811270:intron | 40.0% | |
| !! | CACCTTAGACATTGGCTTAA+CGG | + | chr5_3:40395387-40395406 | Msa0811270:intron | 40.0% |
| AACCGTTAAGCCAATGTCTA+AGG | - | chr5_3:40395392-40395411 | None:intergenic | 40.0% | |
| GAGAAAAGCTGTATGTTCCA+AGG | - | chr5_3:40395565-40395584 | None:intergenic | 40.0% | |
| TAGAAGAGAAGCAAAAGGCT+AGG | + | chr5_3:40395842-40395861 | Msa0811270:CDS | 40.0% | |
| GCATATTTCAGACAAAGAGC+CGG | + | chr5_3:40396239-40396258 | Msa0811270:intron | 40.0% | |
| TGTCTGAAGAATGGAAAGAG+AGG | + | chr5_3:40396427-40396446 | Msa0811270:CDS | 40.0% | |
| TAAGCAAGACATACCTCAAC+GGG | - | chr5_3:40396510-40396529 | None:intergenic | 40.0% | |
| GTAAGCAAGACATACCTCAA+CGG | - | chr5_3:40396511-40396530 | None:intergenic | 40.0% | |
| ACTAATCATCAGCCAGAGAT+AGG | - | chr5_3:40396766-40396785 | None:intergenic | 40.0% | |
| ! | TCATTATCTAGAGCTCTTCG+TGG | + | chr5_3:40396909-40396928 | Msa0811270:CDS | 40.0% |
| CTCAGAGGGTTGAAATCAAA+TGG | - | chr5_3:40396943-40396962 | None:intergenic | 40.0% | |
| !! | GAACAATTGGTTAGTCTCAG+AGG | - | chr5_3:40396958-40396977 | None:intergenic | 40.0% |
| !!! | TTTTCTAGCTCAATGTGGAC+TGG | + | chr5_3:40397129-40397148 | Msa0811270:intron | 40.0% |
| TTTGAACTGGTGGAAAACCA+TGG | + | chr5_3:40397203-40397222 | Msa0811270:CDS | 40.0% | |
| GAAAACCATGGTTCACATGA+AGG | + | chr5_3:40397215-40397234 | Msa0811270:CDS | 40.0% | |
| AAAAGCCTTCATGTGAACCA+TGG | - | chr5_3:40397223-40397242 | None:intergenic | 40.0% | |
| CAATATATTCTGAGCAGTGC+TGG | - | chr5_3:40397265-40397284 | None:intergenic | 40.0% | |
| ATTGACAACAACAGGATTGG+TGG | + | chr5_3:40397281-40397300 | Msa0811270:CDS | 40.0% | |
| !! | GTGTCATTTATTCAACGTGG+AGG | + | chr5_3:40397307-40397326 | Msa0811270:CDS | 40.0% |
| ! | TTTTGAACCAAGAGCAGCAT+CGG | + | chr5_3:40397406-40397425 | Msa0811270:CDS | 40.0% |
| ! | TCGATGATGATGATGATTGC+TGG | - | chr5_3:40397463-40397482 | None:intergenic | 40.0% |
| ATGTTCGCTGGTCAAAAGAT+TGG | - | chr5_3:40397514-40397533 | None:intergenic | 40.0% | |
| TTGTTCGCTGGTCAAAAGAT+TGG | - | chr5_3:40397577-40397596 | None:intergenic | 40.0% | |
| CACTCGAATATGATGAGTAC+TGG | + | chr5_3:40397917-40397936 | Msa0811270:CDS | 40.0% | |
| !! | TGAGTACTGGCAACAAGAAT+TGG | + | chr5_3:40397930-40397949 | Msa0811270:CDS | 40.0% |
| TGAACCAGTTTCCTCCTTCT+AGG | + | chr5_3:40393175-40393194 | Msa0811270:CDS | 45.0% | |
| GAACCAGTTTCCTCCTTCTA+GGG | + | chr5_3:40393176-40393195 | Msa0811270:CDS | 45.0% | |
| AAACCCTAGAAGGAGGAAAC+TGG | - | chr5_3:40393182-40393201 | None:intergenic | 45.0% | |
| !!! | GTTTCCTCCTTCTAGGGTTT+TGG | + | chr5_3:40393182-40393201 | Msa0811270:CDS | 45.0% |
| GATTCCAAAACCCTAGAAGG+AGG | - | chr5_3:40393189-40393208 | None:intergenic | 45.0% | |
| GCTGGAATCTCTCAATTCGA+TGG | + | chr5_3:40393482-40393501 | Msa0811270:CDS | 45.0% | |
| ! | TTGCAGGAGTCTCTCACTTT+TGG | + | chr5_3:40393540-40393559 | Msa0811270:CDS | 45.0% |
| ! | CTTTTCTTGTCATGCAGACG+AGG | + | chr5_3:40394462-40394481 | Msa0811270:intron | 45.0% |
| GACGAGGTCATTGATGTTGA+TGG | + | chr5_3:40394478-40394497 | Msa0811270:intron | 45.0% | |
| CTTCAATTTGGAGACCGATC+TGG | + | chr5_3:40394513-40394532 | Msa0811270:CDS | 45.0% | |
| CCTTCCACATCCATATTACG+AGG | - | chr5_3:40394832-40394851 | None:intergenic | 45.0% | |
| CCTCGTAATATGGATGTGGA+AGG | + | chr5_3:40394829-40394848 | Msa0811270:intron | 45.0% | |
| CATTGTGTGGTGGCTAATTC+TGG | + | chr5_3:40394972-40394991 | Msa0811270:intron | 45.0% | |
| ! | TTGGCAAAAGACTGATGGTG+AGG | - | chr5_3:40395315-40395334 | None:intergenic | 45.0% |
| CGTTAAGCCAATGTCTAAGG+TGG | - | chr5_3:40395389-40395408 | None:intergenic | 45.0% | |
| CTTTCGAAAGCTGGCTGATA+TGG | + | chr5_3:40395888-40395907 | Msa0811270:CDS | 45.0% | |
| CAGATTTGCCGTCACAATCA+GGG | - | chr5_3:40395927-40395946 | None:intergenic | 45.0% | |
| !! | GATTTGTTATCCTGGCGAAG+TGG | + | chr5_3:40396130-40396149 | Msa0811270:CDS | 45.0% |
| GTCTGAAAGACCTTGTGCAA+AGG | + | chr5_3:40396316-40396335 | Msa0811270:CDS | 45.0% | |
| ! | TATGCATTTTCTCCCCGTTG+AGG | + | chr5_3:40396494-40396513 | Msa0811270:CDS | 45.0% |
| AAGCAAGACATACCTCAACG+GGG | - | chr5_3:40396509-40396528 | None:intergenic | 45.0% | |
| TGTGACTGAATGTCCTTGAC+AGG | + | chr5_3:40396843-40396862 | Msa0811270:intron | 45.0% | |
| TTGAGATAAGCATCCGTAGG+TGG | - | chr5_3:40397158-40397177 | None:intergenic | 45.0% | |
| TTCTATTCCCTGGCCAGAAT+GGG | - | chr5_3:40397342-40397361 | None:intergenic | 45.0% | |
| TTTCTATTCCCTGGCCAGAA+TGG | - | chr5_3:40397343-40397362 | None:intergenic | 45.0% | |
| TTTGAACCAAGAGCAGCATC+GGG | + | chr5_3:40397407-40397426 | Msa0811270:CDS | 45.0% | |
| ATGATCGCTGGTCAAAAGAG+TGG | - | chr5_3:40397640-40397659 | None:intergenic | 45.0% | |
| ATGATCGCTGGTCAAAAGAG+TGG | - | chr5_3:40397640-40397659 | None:intergenic | 45.0% | |
| ATGATCGCTGGTCAAAAGAG+TGG | - | chr5_3:40397640-40397659 | None:intergenic | 45.0% | |
| GTCCCTTGATAGGATAAGTG+TGG | - | chr5_3:40397959-40397978 | None:intergenic | 45.0% | |
| !! | TAGAGTTGGTGTCCCTTGAT+AGG | - | chr5_3:40397969-40397988 | None:intergenic | 45.0% |
| ATGAGAGACCTCCAAAGAAG+AGG | + | chr5_3:40398080-40398099 | Msa0811270:CDS | 45.0% | |
| !! | AAACAAAAAATAAAAAATTT+CGG | - | chr5_3:40393596-40393615 | None:intergenic | 5.0% |
| !!! | ATTTTTAAAATTTTAAAGTA+TGG | + | chr5_3:40393928-40393947 | Msa0811270:intron | 5.0% |
| !! | TATAACTTAAAAAATATATA+TGG | - | chr5_3:40397035-40397054 | None:intergenic | 5.0% |
| ! | ACAGCATCTGGATCCCCTTT+TGG | - | chr5_3:40395048-40395067 | None:intergenic | 50.0% |
| AATCCCCACCCTGATTGTGA+CGG | + | chr5_3:40395916-40395935 | Msa0811270:CDS | 50.0% | |
| TTTGCCGTCACAATCAGGGT+GGG | - | chr5_3:40395923-40395942 | None:intergenic | 50.0% | |
| ATTTGCCGTCACAATCAGGG+TGG | - | chr5_3:40395924-40395943 | None:intergenic | 50.0% | |
| GCAGATTTGCCGTCACAATC+AGG | - | chr5_3:40395928-40395947 | None:intergenic | 50.0% | |
| TCCAGTGATGTCTGCCAACA+TGG | - | chr5_3:40396100-40396119 | None:intergenic | 50.0% | |
| GTAGTGGTTTCCCAGTGACT+TGG | - | chr5_3:40396639-40396658 | None:intergenic | 50.0% | |
| ! | TCTTGCTGTGGTACCTGTCA+AGG | - | chr5_3:40396859-40396878 | None:intergenic | 50.0% |
| !! | TGTGGACTGGTTTCCACCTA+CGG | + | chr5_3:40397142-40397161 | Msa0811270:CDS | 50.0% |
| CGCTTGAGATAAGCATCCGT+AGG | - | chr5_3:40397161-40397180 | None:intergenic | 50.0% | |
| CTGGTTATCACCATCGTCAG+GGG | - | chr5_3:40397246-40397265 | None:intergenic | 50.0% | |
| GCTGGTTATCACCATCGTCA+GGG | - | chr5_3:40397247-40397266 | None:intergenic | 50.0% | |
| ! | TGCTGGTTATCACCATCGTC+AGG | - | chr5_3:40397248-40397267 | None:intergenic | 50.0% |
| AGAGACCTCCAAAGAAGAGG+CGG | + | chr5_3:40398083-40398102 | Msa0811270:CDS | 50.0% | |
| ATAAGCCGCCTCTTCTTTGG+AGG | - | chr5_3:40398091-40398110 | None:intergenic | 50.0% | |
| GATTCCATGACTTCCACCGA+AGG | - | chr5_3:40398118-40398137 | None:intergenic | 50.0% | |
| GAGACCGATCTGGACACGTT+GGG | + | chr5_3:40394523-40394542 | Msa0811270:CDS | 55.0% | |
| GCTTCCCAACGTGTCCAGAT+CGG | - | chr5_3:40394530-40394549 | None:intergenic | 55.0% | |
| TTGCCGTCACAATCAGGGTG+GGG | - | chr5_3:40395922-40395941 | None:intergenic | 55.0% | |
| GCCATGTTGGCAGACATCAC+TGG | + | chr5_3:40396096-40396115 | Msa0811270:intron | 55.0% | |
| ! | GAAGGCTTTTCCCCTGACGA+TGG | + | chr5_3:40397233-40397252 | Msa0811270:CDS | 55.0% |
| !! | GAGGCATCGACTTCCCATTC+TGG | + | chr5_3:40397326-40397345 | Msa0811270:CDS | 55.0% |
| ! | ATCGACTTCCCATTCTGGCC+AGG | + | chr5_3:40397331-40397350 | Msa0811270:CDS | 55.0% |
| TCGACTTCCCATTCTGGCCA+GGG | + | chr5_3:40397332-40397351 | Msa0811270:CDS | 55.0% | |
| GAAGTTCCCGATGCTGCTCT+TGG | - | chr5_3:40397416-40397435 | None:intergenic | 55.0% | |
| GGCATAAGCCGCCTCTTCTT+TGG | - | chr5_3:40398094-40398113 | None:intergenic | 55.0% | |
| TCCATGACTTCCACCGAAGG+AGG | - | chr5_3:40398115-40398134 | None:intergenic | 55.0% | |
| GGAGACCGATCTGGACACGT+TGG | + | chr5_3:40394522-40394541 | Msa0811270:CDS | 60.0% | |
| GAGGCGGCTTATGCCTCCTT+CGG | + | chr5_3:40398099-40398118 | Msa0811270:CDS | 60.0% | |
| GCCTCCTTCGGTGGAAGTCA+TGG | + | chr5_3:40398111-40398130 | Msa0811270:CDS | 60.0% | |
| GCGGCTTATGCCTCCTTCGG+TGG | + | chr5_3:40398102-40398121 | Msa0811270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 40393171 | 40398141 | 40393171 | ID=Msa0811270;Name=Msa0811270 |
| chr5_3 | mRNA | 40393171 | 40398141 | 40393171 | ID=Msa0811270-mRNA-1;Parent=Msa0811270;Name=Msa0811270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|11|0|700 |
| chr5_3 | exon | 40393171 | 40393267 | 40393171 | ID=Msa0811270-mRNA-1:exon:12392;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40393460 | 40393561 | 40393460 | ID=Msa0811270-mRNA-1:exon:12393;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40394479 | 40394639 | 40394479 | ID=Msa0811270-mRNA-1:exon:12394;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40394769 | 40394822 | 40394769 | ID=Msa0811270-mRNA-1:exon:12395;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40395021 | 40395145 | 40395021 | ID=Msa0811270-mRNA-1:exon:12396;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40395825 | 40396025 | 40395825 | ID=Msa0811270-mRNA-1:exon:12397;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40396109 | 40396164 | 40396109 | ID=Msa0811270-mRNA-1:exon:12398;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40396250 | 40396337 | 40396250 | ID=Msa0811270-mRNA-1:exon:12399;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40396422 | 40396515 | 40396422 | ID=Msa0811270-mRNA-1:exon:12400;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40396865 | 40396984 | 40396865 | ID=Msa0811270-mRNA-1:exon:12401;Parent=Msa0811270-mRNA-1 |
| chr5_3 | exon | 40397137 | 40398141 | 40397137 | ID=Msa0811270-mRNA-1:exon:12402;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40393171 | 40393267 | 40393171 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40393460 | 40393561 | 40393460 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40394479 | 40394639 | 40394479 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40394769 | 40394822 | 40394769 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40395021 | 40395145 | 40395021 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40395825 | 40396025 | 40395825 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40396109 | 40396164 | 40396109 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40396250 | 40396337 | 40396250 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40396422 | 40396515 | 40396422 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40396865 | 40396984 | 40396865 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| chr5_3 | CDS | 40397137 | 40398141 | 40397137 | ID=Msa0811270-mRNA-1:cds;Parent=Msa0811270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
