Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855010 | XP_024639172.1 | 99.291 | 141 | 1 | 0 | 1 | 141 | 34 | 174 | 2.87e-100 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855010 | sp|Q54UU1|TPPC4_DICDI | 55.469 | 128 | 56 | 1 | 3 | 129 | 2 | 129 | 3.89e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855010 | A0A072UGD7 | 99.291 | 141 | 1 | 0 | 1 | 141 | 34 | 174 | 1.37e-100 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052300 | Msa0855010 | -0.807935 | 3.964219e-50 | -8.615850e-47 |
| Msa0052350 | Msa0855010 | -0.814244 | 1.700382e-51 | -8.615850e-47 |
| Msa0623200 | Msa0855010 | 0.809037 | 2.305809e-50 | -8.615850e-47 |
| Msa0705000 | Msa0855010 | 0.804377 | 2.224556e-49 | -8.615850e-47 |
| Msa0785130 | Msa0855010 | 0.818467 | 1.930580e-52 | -8.615850e-47 |
| Msa0806920 | Msa0855010 | 0.819626 | 1.051925e-52 | -8.615850e-47 |
| Msa0166750 | Msa0855010 | 0.829701 | 4.442842e-55 | -8.615850e-47 |
| Msa0224560 | Msa0855010 | 0.817317 | 3.510650e-52 | -8.615850e-47 |
| Msa0408240 | Msa0855010 | -0.807224 | 5.609900e-50 | -8.615850e-47 |
| Msa0443390 | Msa0855010 | 0.803226 | 3.856373e-49 | -8.615850e-47 |
| Msa0280430 | Msa0855010 | 0.804908 | 1.723688e-49 | -8.615850e-47 |
| Msa0304590 | Msa0855010 | 0.817890 | 2.608171e-52 | -8.615850e-47 |
| Msa0304660 | Msa0855010 | 0.818748 | 1.667157e-52 | -8.615850e-47 |
| Msa0331700 | Msa0855010 | 0.819677 | 1.024431e-52 | -8.615850e-47 |
| Msa0348830 | Msa0855010 | 0.805963 | 1.035590e-49 | -8.615850e-47 |
| Msa0855010 | Msa0960830 | 0.804964 | 1.677810e-49 | -8.615850e-47 |
| Msa0855010 | Msa1025940 | 0.813219 | 2.859238e-51 | -8.615850e-47 |
| Msa0855010 | Msa1036550 | 0.812678 | 3.757068e-51 | -8.615850e-47 |
| Msa0855010 | Msa1085470 | 0.824471 | 7.927335e-54 | -8.615850e-47 |
| Msa0855010 | Msa1125500 | 0.809259 | 2.067331e-50 | -8.615850e-47 |
| Msa0855010 | Msa1166870 | 0.815388 | 9.483838e-52 | -8.615850e-47 |
| Msa0855010 | Msa1184370 | 0.819454 | 1.151959e-52 | -8.615850e-47 |
| Msa0855010 | Msa1227690 | 0.815457 | 9.155084e-52 | -8.615850e-47 |
| Msa0855010 | Msa1234980 | 0.812982 | 3.222817e-51 | -8.615850e-47 |
| Msa0855010 | Msa1349570 | 0.821599 | 3.706617e-53 | -8.615850e-47 |
| Msa0855010 | Msa1369190 | 0.831673 | 1.461219e-55 | -8.615850e-47 |
| Msa0855010 | Msa1418960 | -0.807087 | 5.998273e-50 | -8.615850e-47 |
| Msa0855010 | Msa1442850 | 0.824646 | 7.212013e-54 | -8.615850e-47 |
| Msa0855010 | Msa1450280 | 0.801804 | 7.575874e-49 | -8.615850e-47 |
| Msa0855010 | Msa1462860 | 0.834252 | 3.337151e-56 | -8.615850e-47 |
| Msa0855010 | Msa1465080 | 0.803938 | 2.745266e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855010 | MtrunA17_Chr5g0432621 | 99.291 | 141 | 1 | 0 | 1 | 141 | 34 | 174 | 2.64e-104 | 295 |
| Msa0855010 | MtrunA17_Chr8g0390661 | 92.105 | 114 | 9 | 0 | 28 | 141 | 1 | 114 | 4.14e-79 | 229 |
| Msa0855010 | MtrunA17_Chr8g0385351 | 29.577 | 142 | 83 | 3 | 7 | 132 | 28 | 168 | 6.70e-15 | 67.8 |
| Msa0855010 | MtrunA17_Chr4g0024741 | 29.577 | 142 | 83 | 3 | 7 | 132 | 26 | 166 | 7.17e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855010 | AT5G02280.1 | 87.943 | 141 | 17 | 0 | 1 | 141 | 1 | 141 | 6.70e-94 | 268 |
| Msa0855010 | AT1G51160.1 | 28.169 | 142 | 85 | 3 | 7 | 132 | 26 | 166 | 3.59e-14 | 66.2 |
| Msa0855010 | AT1G51160.3 | 28.169 | 142 | 85 | 3 | 7 | 132 | 26 | 166 | 3.59e-14 | 66.2 |
| Msa0855010 | AT1G51160.2 | 28.169 | 142 | 85 | 3 | 7 | 132 | 26 | 166 | 3.59e-14 | 66.2 |
Find 44 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAGTTATCACCTGTTTC+AGG | 0.153521 | 5_4:-48023966 | Msa0855010:CDS |
| CCCAGAGAACTTTGGTTATA+CGG | 0.222002 | 5_4:+48025545 | None:intergenic |
| AGATTCTGGCAAAAGGCTTT+TGG | 0.277713 | 5_4:-48024795 | Msa0855010:five_prime_UTR |
| TCACCTGTTTCAGGTTGTTC+AGG | 0.323200 | 5_4:-48023957 | Msa0855010:CDS |
| CAGGGAAGCCGATTGAAGTT+TGG | 0.328958 | 5_4:-48025477 | Msa0855010:five_prime_UTR |
| CATTGCTTCCAATCGCTAAC+AGG | 0.330687 | 5_4:-48023900 | Msa0855010:intron |
| CCCGTATAACCAAAGTTCTC+TGG | 0.336848 | 5_4:-48025546 | Msa0855010:five_prime_UTR |
| GAGACATATCTCATTTGAAT+TGG | 0.338114 | 5_4:+48022467 | None:intergenic |
| GTTAATCACTGTCTTGTAAG+AGG | 0.371354 | 5_4:-48022591 | Msa0855010:three_prime_UTR |
| CTTTCTATTTGTTGAGTGCC+AGG | 0.384294 | 5_4:+48022785 | None:intergenic |
| TGGTGGATTGATCTACTATA+AGG | 0.415123 | 5_4:-48024733 | Msa0855010:intron |
| AAAGGATCGTGTTGCATTGT+TGG | 0.417233 | 5_4:-48022645 | Msa0855010:CDS |
| CCTTACGAGTGGCTAGCTTA+TGG | 0.418783 | 5_4:-48024010 | Msa0855010:CDS |
| ATACGTATATGAATTGTATA+CGG | 0.424502 | 5_4:-48022753 | Msa0855010:CDS |
| AAGGATCGTGTTGCATTGTT+GGG | 0.433648 | 5_4:-48022644 | Msa0855010:CDS |
| TTCTTTGCAGTGTGTGAGCC+TGG | 0.438457 | 5_4:-48022803 | Msa0855010:CDS |
| GGCATCTCTATCTCATAGAA+AGG | 0.445455 | 5_4:+48022713 | None:intergenic |
| ATTCCTGAACAACCTGAAAC+AGG | 0.450702 | 5_4:+48023954 | None:intergenic |
| TCTAACTCAGTCAGTACAAA+AGG | 0.461735 | 5_4:-48022663 | Msa0855010:CDS |
| TCAAAGAGCTCACATCGAAT+AGG | 0.467271 | 5_4:+48022692 | None:intergenic |
| CTTTACATCATCAATAAGTC+TGG | 0.473288 | 5_4:-48024753 | Msa0855010:CDS |
| TAGAAACGAGATTCATTGAC+AGG | 0.483342 | 5_4:-48025496 | Msa0855010:five_prime_UTR |
| ATTACCAGCCAAACTTCAAT+CGG | 0.485709 | 5_4:+48025469 | None:intergenic |
| CCGTATAACCAAAGTTCTCT+GGG | 0.485942 | 5_4:-48025545 | Msa0855010:five_prime_UTR |
| ATTCAGGATTATGGGTCGGC+TGG | 0.489577 | 5_4:-48024053 | Msa0855010:intron |
| AAGTAATACCTGTTAGCGAT+TGG | 0.512163 | 5_4:+48023892 | None:intergenic |
| AGACAGTGATTAACAAAACT+TGG | 0.514430 | 5_4:+48022600 | None:intergenic |
| TGATTAACAAAACTTGGCCT+TGG | 0.529229 | 5_4:+48022606 | None:intergenic |
| CCAGAGAACTTTGGTTATAC+GGG | 0.530353 | 5_4:+48025546 | None:intergenic |
| GAAGATCAAATGTGTCAGCT+TGG | 0.530412 | 5_4:+48023922 | None:intergenic |
| TTATGGGTCGGCTGGACGAA+TGG | 0.537132 | 5_4:-48024045 | Msa0855010:CDS |
| TGATATTCAGGATTATGGGT+CGG | 0.544902 | 5_4:-48024057 | Msa0855010:intron |
| GAAGCCGATTGAAGTTTGGC+TGG | 0.551335 | 5_4:-48025473 | Msa0855010:intron |
| GCATCTCTATCTCATAGAAA+GGG | 0.553734 | 5_4:+48022714 | None:intergenic |
| TACATCATCAATAAGTCTGG+TGG | 0.561761 | 5_4:-48024750 | Msa0855010:CDS |
| CCATAAGCTAGCCACTCGTA+AGG | 0.587798 | 5_4:+48024010 | None:intergenic |
| AGGTGATAACTGCTGAGAGA+TGG | 0.596514 | 5_4:+48023974 | None:intergenic |
| GGTCAATAAGTTGCTGACCA+AGG | 0.653391 | 5_4:-48022623 | Msa0855010:exon |
| TACAAATGATACCTTACGAG+TGG | 0.655543 | 5_4:-48024021 | Msa0855010:CDS |
| GGGTATTACAACGCAACAGG+AGG | 0.669841 | 5_4:-48025523 | Msa0855010:five_prime_UTR |
| GTATAACCAAAGTTCTCTGG+GGG | 0.679183 | 5_4:-48025543 | Msa0855010:five_prime_UTR |
| AGAAACGAGATTCATTGACA+GGG | 0.684455 | 5_4:-48025495 | Msa0855010:five_prime_UTR |
| CGTATAACCAAAGTTCTCTG+GGG | 0.694686 | 5_4:-48025544 | Msa0855010:five_prime_UTR |
| TGTGCGCAAATACATAGACC+AGG | 0.712047 | 5_4:+48022545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTAGATTGAATCA+TGG | + | chr5_4:48023447-48023466 | None:intergenic | 15.0% |
| !! | ACTTATATACTAAAAAACAA+CGG | + | chr5_4:48023491-48023510 | None:intergenic | 15.0% |
| !!! | TATATAAGTTTTGTTAAGTT+AGG | - | chr5_4:48023502-48023521 | Msa0855010:intron | 15.0% |
| !! | TAATGTTCAATACAAAATTT+AGG | + | chr5_4:48023639-48023658 | None:intergenic | 15.0% |
| !! | TAATATTAATCAAGATTTCA+AGG | + | chr5_4:48023777-48023796 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTTTTGAAAGC+TGG | - | chr5_4:48024339-48024358 | Msa0855010:intron | 15.0% |
| !!! | TATAATTTTTTTTGAAAGCT+GGG | - | chr5_4:48024340-48024359 | Msa0855010:intron | 15.0% |
| !! | AAAACCTAAAATTTAAACAA+GGG | + | chr5_4:48024964-48024983 | None:intergenic | 15.0% |
| !! | AAAACCTAAAATTTAAACAA+GGG | + | chr5_4:48024964-48024983 | None:intergenic | 15.0% |
| !! | ATGTAGTTAATTGCAAAATA+GGG | + | chr5_4:48022996-48023015 | None:intergenic | 20.0% |
| !! | AATGTAGTTAATTGCAAAAT+AGG | + | chr5_4:48022997-48023016 | None:intergenic | 20.0% |
| !!! | TTTGCAATTAACTACATTTT+TGG | - | chr5_4:48022999-48023018 | Msa0855010:intron | 20.0% |
| !!! | TTGCAATTAACTACATTTTT+GGG | - | chr5_4:48023000-48023019 | Msa0855010:intron | 20.0% |
| !! | ATTGAACTTCATTAAAAATC+TGG | + | chr5_4:48023173-48023192 | None:intergenic | 20.0% |
| !! | AAGTTCAATTGTTTAAACTA+GGG | - | chr5_4:48023184-48023203 | Msa0855010:intron | 20.0% |
| !! | AGATATATTCTACTCTAAAT+TGG | - | chr5_4:48023349-48023368 | Msa0855010:intron | 20.0% |
| !! | CTTATATACTAAAAAACAAC+GGG | + | chr5_4:48023490-48023509 | None:intergenic | 20.0% |
| !! | TATACTGAAATCTCAAAAAA+AGG | + | chr5_4:48023534-48023553 | None:intergenic | 20.0% |
| !! | TGAATCATAGTATGATAATT+AGG | - | chr5_4:48023568-48023587 | Msa0855010:intron | 20.0% |
| !! | GATTTGAAAAAATTCTACTA+AGG | - | chr5_4:48023737-48023756 | Msa0855010:intron | 20.0% |
| !!! | TTTTTTGTATTAGATGATAC+TGG | + | chr5_4:48023848-48023867 | None:intergenic | 20.0% |
| !!! | TGTTAAACTTTTTGATATTC+AGG | - | chr5_4:48023938-48023957 | Msa0855010:CDS | 20.0% |
| !!! | TTTTTGATATTCAGGATTAT+GGG | - | chr5_4:48023946-48023965 | Msa0855010:CDS | 20.0% |
| !!! | GTTTTATTTGATTATGTACT+AGG | - | chr5_4:48024385-48024404 | Msa0855010:intron | 20.0% |
| !! | TTGATAAGAGTTTATAAAGA+CGG | - | chr5_4:48024564-48024583 | Msa0855010:intron | 20.0% |
| !!! | TTTCTCTTAGATTTTCTATT+GGG | + | chr5_4:48024634-48024653 | None:intergenic | 20.0% |
| !!! | ATTTCTCTTAGATTTTCTAT+TGG | + | chr5_4:48024635-48024654 | None:intergenic | 20.0% |
| !!! | TTCTATTGACTGTTATTTAT+TGG | - | chr5_4:48024663-48024682 | Msa0855010:intron | 20.0% |
| !!! | ATTTTTTGAATTCCTTTTTG+AGG | - | chr5_4:48024713-48024732 | Msa0855010:intron | 20.0% |
| !!! | TAAAATTTAAACAAGGGTAT+GGG | + | chr5_4:48024958-48024977 | None:intergenic | 20.0% |
| !! | CAAAACCTAAAATTTAAACA+AGG | + | chr5_4:48024965-48024984 | None:intergenic | 20.0% |
| !!! | TAAAATTTAAACAAGGGTAT+GGG | + | chr5_4:48024958-48024977 | None:intergenic | 20.0% |
| !! | CAAAACCTAAAATTTAAACA+AGG | + | chr5_4:48024965-48024984 | None:intergenic | 20.0% |
| !! | ATACGTATATGAATTGTATA+CGG | - | chr5_4:48025254-48025273 | Msa0855010:intron | 20.0% |
| !!! | TAGTACAAAGTGTTGTTAAA+TGG | - | chr5_4:48022915-48022934 | Msa0855010:intron | 25.0% |
| ! | TTGACAACTTAAAGAACATT+TGG | + | chr5_4:48023089-48023108 | None:intergenic | 25.0% |
| ! | GAAGTTCAATTGTTTAAACT+AGG | - | chr5_4:48023183-48023202 | Msa0855010:intron | 25.0% |
| !! | CTTTTTGATATTCAGGATTA+TGG | - | chr5_4:48023945-48023964 | Msa0855010:CDS | 25.0% |
| ! | TATTTGATTATGTACTAGGA+AGG | - | chr5_4:48024389-48024408 | Msa0855010:intron | 25.0% |
| ! | TGATAAGAGTTTATAAAGAC+GGG | - | chr5_4:48024565-48024584 | Msa0855010:intron | 25.0% |
| ! | AAAAATTTATACTGAGCAGT+GGG | + | chr5_4:48024699-48024718 | None:intergenic | 25.0% |
| ! | AAAAAATTTATACTGAGCAG+TGG | + | chr5_4:48024700-48024719 | None:intergenic | 25.0% |
| !! | CTTGATAGTTTAGATATTTC+TGG | - | chr5_4:48024830-48024849 | Msa0855010:intron | 25.0% |
| !! | TGTATTTGGTTTAATATCTG+TGG | - | chr5_4:48024902-48024921 | Msa0855010:intron | 25.0% |
| ! | CTAAAATTTAAACAAGGGTA+TGG | + | chr5_4:48024959-48024978 | None:intergenic | 25.0% |
| !!! | CATACCCTTGTTTAAATTTT+AGG | - | chr5_4:48024957-48024976 | Msa0855010:intron | 25.0% |
| !! | CTTGATAGTTTAGATATTTC+TGG | - | chr5_4:48024830-48024849 | Msa0855010:intron | 25.0% |
| !! | TGTATTTGGTTTAATATCTG+TGG | - | chr5_4:48024902-48024921 | Msa0855010:intron | 25.0% |
| ! | CTAAAATTTAAACAAGGGTA+TGG | + | chr5_4:48024959-48024978 | None:intergenic | 25.0% |
| !!! | CATACCCTTGTTTAAATTTT+AGG | - | chr5_4:48024957-48024976 | Msa0855010:intron | 25.0% |
| !!! | TTAGGTTTTGATATAACATC+AGG | - | chr5_4:48024975-48024994 | Msa0855010:intron | 25.0% |
| ! | TCATTTGAATTGGAAAAACA+TGG | + | chr5_4:48025533-48025552 | None:intergenic | 25.0% |
| ATTGTTAGAAGAGAGAAAGA+AGG | + | chr5_4:48022567-48022586 | None:intergenic | 30.0% | |
| !! | ACACTGAAAGAGTATTAAGT+AGG | - | chr5_4:48022798-48022817 | Msa0855010:CDS | 30.0% |
| ATTGACAACATTACATGGAT+CGG | + | chr5_4:48022844-48022863 | None:intergenic | 30.0% | |
| GACTAATTGACAACATTACA+TGG | + | chr5_4:48022849-48022868 | None:intergenic | 30.0% | |
| TTGTCAATTAGTCGTTATAG+CGG | - | chr5_4:48022856-48022875 | Msa0855010:intron | 30.0% | |
| CTTTACATCATCAATAAGTC+TGG | - | chr5_4:48023254-48023273 | Msa0855010:intron | 30.0% | |
| TTGTTAATTGGAGTGAGTTT+CGG | - | chr5_4:48023398-48023417 | Msa0855010:intron | 30.0% | |
| AACAACGGGATAAAATACAA+AGG | + | chr5_4:48023476-48023495 | None:intergenic | 30.0% | |
| CTGAAATCTCAAAAAAAGGA+AGG | + | chr5_4:48023530-48023549 | None:intergenic | 30.0% | |
| AATTAGGATATGACTTCAGT+TGG | - | chr5_4:48023584-48023603 | Msa0855010:intron | 30.0% | |
| AAATAACCCATCGTTAAGTT+AGG | - | chr5_4:48024144-48024163 | Msa0855010:intron | 30.0% | |
| TGTGGATGAAAATCAAATGA+TGG | + | chr5_4:48024256-48024275 | None:intergenic | 30.0% | |
| AACCATCTTTCATTAAAACC+TGG | + | chr5_4:48024315-48024334 | None:intergenic | 30.0% | |
| TGGAAATTCTACCTTTATTG+TGG | - | chr5_4:48024426-48024445 | Msa0855010:intron | 30.0% | |
| GATAAGAGTTTATAAAGACG+GGG | - | chr5_4:48024566-48024585 | Msa0855010:intron | 30.0% | |
| ! | TATTTTCCTTTGCCTCAAAA+AGG | + | chr5_4:48024728-48024747 | None:intergenic | 30.0% |
| GACTTTCCTAATGTATGTAA+AGG | - | chr5_4:48024768-48024787 | Msa0855010:CDS | 30.0% | |
| ATTCATTGTGTGGATGTATT+TGG | - | chr5_4:48024888-48024907 | Msa0855010:intron | 30.0% | |
| ATTCATTGTGTGGATGTATT+TGG | - | chr5_4:48024888-48024907 | Msa0855010:intron | 30.0% | |
| ATTAATTCTTCTCTGCAACA+GGG | - | chr5_4:48025175-48025194 | Msa0855010:intron | 30.0% | |
| AGACAGTGATTAACAAAACT+TGG | + | chr5_4:48025410-48025429 | None:intergenic | 30.0% | |
| !! | CTACTATGTTTTATTGTACC+TGG | - | chr5_4:48025444-48025463 | Msa0855010:intron | 30.0% |
| GAGACATATCTCATTTGAAT+TGG | + | chr5_4:48025543-48025562 | None:intergenic | 30.0% | |
| TAGAAACGAGATTCATTGAC+AGG | - | chr5_4:48022511-48022530 | Msa0855010:three_prime_UTR | 35.0% | |
| AGAAACGAGATTCATTGACA+GGG | - | chr5_4:48022512-48022531 | Msa0855010:three_prime_UTR | 35.0% | |
| ATTACCAGCCAAACTTCAAT+CGG | + | chr5_4:48022541-48022560 | None:intergenic | 35.0% | |
| AAGCACAACTAAATGCAACT+AGG | + | chr5_4:48022696-48022715 | None:intergenic | 35.0% | |
| TGTATTCATTGTCTTCTCGA+AGG | - | chr5_4:48022751-48022770 | Msa0855010:CDS | 35.0% | |
| AGTGTCACAACTCATATAAC+TGG | + | chr5_4:48022783-48022802 | None:intergenic | 35.0% | |
| ACTATGCTACAGATCTAAAC+TGG | + | chr5_4:48022952-48022971 | None:intergenic | 35.0% | |
| AGTTTAGATCTGTAGCATAG+TGG | - | chr5_4:48022951-48022970 | Msa0855010:intron | 35.0% | |
| ! | AAACTAGGGTTTTCAGATTC+TGG | - | chr5_4:48023198-48023217 | Msa0855010:intron | 35.0% |
| TACATCATCAATAAGTCTGG+TGG | - | chr5_4:48023257-48023276 | Msa0855010:intron | 35.0% | |
| !! | TGGTGGATTGATCTACTATA+AGG | - | chr5_4:48023274-48023293 | Msa0855010:intron | 35.0% |
| AGTTGTATTTGCGAAGCTTA+GGG | - | chr5_4:48023712-48023731 | Msa0855010:intron | 35.0% | |
| AGCAGTTTAAGAAACCACAA+TGG | - | chr5_4:48023796-48023815 | Msa0855010:intron | 35.0% | |
| TGGATTAAATGATGCCATTG+TGG | + | chr5_4:48023813-48023832 | None:intergenic | 35.0% | |
| !! | GATACTGGTTCTAACAGATA+TGG | + | chr5_4:48023833-48023852 | None:intergenic | 35.0% |
| ! | TGAGTTAGAGCAATGTGTTT+TGG | - | chr5_4:48023890-48023909 | Msa0855010:intron | 35.0% |
| TGATATTCAGGATTATGGGT+CGG | - | chr5_4:48023950-48023969 | Msa0855010:CDS | 35.0% | |
| TACAAATGATACCTTACGAG+TGG | - | chr5_4:48023986-48024005 | Msa0855010:CDS | 35.0% | |
| AAGTAATACCTGTTAGCGAT+TGG | + | chr5_4:48024118-48024137 | None:intergenic | 35.0% | |
| TGAAAGCCTAACTTAACGAT+GGG | + | chr5_4:48024153-48024172 | None:intergenic | 35.0% | |
| ATCAGTATGCACATGATGTT+TGG | + | chr5_4:48024209-48024228 | None:intergenic | 35.0% | |
| !! | CATTTGATTTTCATCCACAC+TGG | - | chr5_4:48024257-48024276 | Msa0855010:intron | 35.0% |
| TTGATTATGTACTAGGAAGG+AGG | - | chr5_4:48024392-48024411 | Msa0855010:intron | 35.0% | |
| ! | GAGTCTTATCTATCTGATGT+GGG | + | chr5_4:48024544-48024563 | None:intergenic | 35.0% |
| ! | AGAGTCTTATCTATCTGATG+TGG | + | chr5_4:48024545-48024564 | None:intergenic | 35.0% |
| !!! | TGAATTCCTTTTTGAGGCAA+AGG | - | chr5_4:48024719-48024738 | Msa0855010:intron | 35.0% |
| CTGCAACCTTTACATACATT+AGG | + | chr5_4:48024777-48024796 | None:intergenic | 35.0% | |
| CTAATGTATGTAAAGGTTGC+AGG | - | chr5_4:48024775-48024794 | Msa0855010:exon | 35.0% | |
| ! | ATTTAAACAAGGGTATGGGT+AGG | + | chr5_4:48024954-48024973 | None:intergenic | 35.0% |
| ! | ATTTAAACAAGGGTATGGGT+AGG | + | chr5_4:48024954-48024973 | None:intergenic | 35.0% |
| CATTAATTCTTCTCTGCAAC+AGG | - | chr5_4:48025174-48025193 | Msa0855010:intron | 35.0% | |
| GCATCTCTATCTCATAGAAA+GGG | + | chr5_4:48025296-48025315 | None:intergenic | 35.0% | |
| TCTAACTCAGTCAGTACAAA+AGG | - | chr5_4:48025344-48025363 | Msa0855010:intron | 35.0% | |
| TGATTAACAAAACTTGGCCT+TGG | + | chr5_4:48025404-48025423 | None:intergenic | 35.0% | |
| GTTAATCACTGTCTTGTAAG+AGG | - | chr5_4:48025416-48025435 | Msa0855010:intron | 35.0% | |
| CCAGAGAACTTTGGTTATAC+GGG | + | chr5_4:48022464-48022483 | None:intergenic | 40.0% | |
| CCCAGAGAACTTTGGTTATA+CGG | + | chr5_4:48022465-48022484 | None:intergenic | 40.0% | |
| CCGTATAACCAAAGTTCTCT+GGG | - | chr5_4:48022462-48022481 | Msa0855010:three_prime_UTR | 40.0% | |
| CGTATAACCAAAGTTCTCTG+GGG | - | chr5_4:48022463-48022482 | Msa0855010:three_prime_UTR | 40.0% | |
| GTATAACCAAAGTTCTCTGG+GGG | - | chr5_4:48022464-48022483 | Msa0855010:three_prime_UTR | 40.0% | |
| ATGAAAACGCAGCAGCATTT+GGG | + | chr5_4:48022660-48022679 | None:intergenic | 40.0% | |
| TATGAAAACGCAGCAGCATT+TGG | + | chr5_4:48022661-48022680 | None:intergenic | 40.0% | |
| CAACATTACATGGATCGGAT+CGG | + | chr5_4:48022839-48022858 | None:intergenic | 40.0% | |
| AAATGTGATGTAGCTGAAGC+AGG | - | chr5_4:48023062-48023081 | Msa0855010:intron | 40.0% | |
| AATGTGATGTAGCTGAAGCA+GGG | - | chr5_4:48023063-48023082 | Msa0855010:intron | 40.0% | |
| ! | GGTTTTCAGATTCTGGCAAA+AGG | - | chr5_4:48023205-48023224 | Msa0855010:intron | 40.0% |
| ! | AGATTCTGGCAAAAGGCTTT+TGG | - | chr5_4:48023212-48023231 | Msa0855010:intron | 40.0% |
| ! | GAGCATGTTGGGTTGTTAAT+TGG | - | chr5_4:48023386-48023405 | Msa0855010:intron | 40.0% |
| GAGTTGTATTTGCGAAGCTT+AGG | - | chr5_4:48023711-48023730 | Msa0855010:intron | 40.0% | |
| ATTCCTGAACAACCTGAAAC+AGG | + | chr5_4:48024056-48024075 | None:intergenic | 40.0% | |
| GAAGATCAAATGTGTCAGCT+TGG | + | chr5_4:48024088-48024107 | None:intergenic | 40.0% | |
| CTGAAAGCCTAACTTAACGA+TGG | + | chr5_4:48024154-48024173 | None:intergenic | 40.0% | |
| !! | GGCCAGGTTTTAATGAAAGA+TGG | - | chr5_4:48024310-48024329 | Msa0855010:intron | 40.0% |
| ! | AAAGCCAACAATGAAGGTGT+TGG | + | chr5_4:48024504-48024523 | None:intergenic | 40.0% |
| !! | ACCTTCATTGTTGGCTTTGA+GGG | - | chr5_4:48024506-48024525 | Msa0855010:intron | 40.0% |
| CTAACTCATCCTTGCAAAAC+CGG | + | chr5_4:48024610-48024629 | None:intergenic | 40.0% | |
| TCCACACAATGAATGCAAAG+TGG | + | chr5_4:48024882-48024901 | None:intergenic | 40.0% | |
| TCCACACAATGAATGCAAAG+TGG | + | chr5_4:48024882-48024901 | None:intergenic | 40.0% | |
| ! | CTTTCTATTTGTTGAGTGCC+AGG | + | chr5_4:48025225-48025244 | None:intergenic | 40.0% |
| GGCATCTCTATCTCATAGAA+AGG | + | chr5_4:48025297-48025316 | None:intergenic | 40.0% | |
| TCAAAGAGCTCACATCGAAT+AGG | + | chr5_4:48025318-48025337 | None:intergenic | 40.0% | |
| AAAGGATCGTGTTGCATTGT+TGG | - | chr5_4:48025362-48025381 | Msa0855010:intron | 40.0% | |
| AAGGATCGTGTTGCATTGTT+GGG | - | chr5_4:48025363-48025382 | Msa0855010:intron | 40.0% | |
| CCCGTATAACCAAAGTTCTC+TGG | - | chr5_4:48022461-48022480 | Msa0855010:three_prime_UTR | 45.0% | |
| GTAATACCCCCAGAGAACTT+TGG | + | chr5_4:48022473-48022492 | None:intergenic | 45.0% | |
| ! | CTGCGTTTTCATAGAAGCTC+AGG | - | chr5_4:48022668-48022687 | Msa0855010:CDS | 45.0% |
| ATTAAGTAGGTGCGTGCTTC+AGG | - | chr5_4:48022811-48022830 | Msa0855010:CDS | 45.0% | |
| TTAAGTAGGTGCGTGCTTCA+GGG | - | chr5_4:48022812-48022831 | Msa0855010:CDS | 45.0% | |
| CAAATTCCACCACGCTATAG+CGG | + | chr5_4:48022889-48022908 | None:intergenic | 45.0% | |
| !! | CTGGCAAAAGGCTTTTGGAA+TGG | - | chr5_4:48023217-48023236 | Msa0855010:intron | 45.0% |
| TCTTCGCTTCATGAGCATGT+TGG | - | chr5_4:48023374-48023393 | Msa0855010:intron | 45.0% | |
| CTTCGCTTCATGAGCATGTT+GGG | - | chr5_4:48023375-48023394 | Msa0855010:intron | 45.0% | |
| GGATATGACTTCAGTTGGCA+AGG | - | chr5_4:48023589-48023608 | Msa0855010:intron | 45.0% | |
| TATGACTTCAGTTGGCAAGG+TGG | - | chr5_4:48023592-48023611 | Msa0855010:intron | 45.0% | |
| AGGTGATAACTGCTGAGAGA+TGG | + | chr5_4:48024036-48024055 | None:intergenic | 45.0% | |
| CAGCAGTTATCACCTGTTTC+AGG | - | chr5_4:48024041-48024060 | Msa0855010:CDS | 45.0% | |
| !! | TCACCTGTTTCAGGTTGTTC+AGG | - | chr5_4:48024050-48024069 | Msa0855010:CDS | 45.0% |
| CATTGCTTCCAATCGCTAAC+AGG | - | chr5_4:48024107-48024126 | Msa0855010:intron | 45.0% | |
| GTTAGGCTTTCAGACTCACA+TGG | - | chr5_4:48024161-48024180 | Msa0855010:intron | 45.0% | |
| ATGCCACAATTACGCGACTA+GGG | + | chr5_4:48024457-48024476 | None:intergenic | 45.0% | |
| AATGCCACAATTACGCGACT+AGG | + | chr5_4:48024458-48024477 | None:intergenic | 45.0% | |
| AGTCGCGTAATTGTGGCATT+TGG | - | chr5_4:48024458-48024477 | Msa0855010:intron | 45.0% | |
| GTCGCGTAATTGTGGCATTT+GGG | - | chr5_4:48024459-48024478 | Msa0855010:intron | 45.0% | |
| !! | CACCTTCATTGTTGGCTTTG+AGG | - | chr5_4:48024505-48024524 | Msa0855010:intron | 45.0% |
| !! | CCTTCATTGTTGGCTTTGAG+GGG | - | chr5_4:48024507-48024526 | Msa0855010:intron | 45.0% |
| !! | CTTCATTGTTGGCTTTGAGG+GGG | - | chr5_4:48024508-48024527 | Msa0855010:intron | 45.0% |
| !! | CAAAACCGGCTTGTAAGATG+AGG | + | chr5_4:48024596-48024615 | None:intergenic | 45.0% |
| !! | TCTTACAAGCCGGTTTTGCA+AGG | - | chr5_4:48024598-48024617 | Msa0855010:intron | 45.0% |
| ! | CGGTTTTGCAAGGATGAGTT+AGG | - | chr5_4:48024608-48024627 | Msa0855010:intron | 45.0% |
| ! | GCCACTTTGCATTCATTGTG+TGG | - | chr5_4:48024878-48024897 | Msa0855010:intron | 45.0% |
| ! | GCCACTTTGCATTCATTGTG+TGG | - | chr5_4:48024878-48024897 | Msa0855010:intron | 45.0% |
| GGTCAATAAGTTGCTGACCA+AGG | - | chr5_4:48025384-48025403 | Msa0855010:intron | 45.0% | |
| TGTGCGCAAATACATAGACC+AGG | + | chr5_4:48025465-48025484 | None:intergenic | 45.0% | |
| !! | TGGGGGTATTACAACGCAAC+AGG | - | chr5_4:48022481-48022500 | Msa0855010:three_prime_UTR | 50.0% |
| GGGTATTACAACGCAACAGG+AGG | - | chr5_4:48022484-48022503 | Msa0855010:three_prime_UTR | 50.0% | |
| CAGGGAAGCCGATTGAAGTT+TGG | - | chr5_4:48022530-48022549 | Msa0855010:three_prime_UTR | 50.0% | |
| GAAGCCGATTGAAGTTTGGC+TGG | - | chr5_4:48022534-48022553 | Msa0855010:three_prime_UTR | 50.0% | |
| CACCACGCTATAGCGGTATA+TGG | + | chr5_4:48022882-48022901 | None:intergenic | 50.0% | |
| CATATACCGCTATAGCGTGG+TGG | - | chr5_4:48022880-48022899 | Msa0855010:intron | 50.0% | |
| ATTCAGGATTATGGGTCGGC+TGG | - | chr5_4:48023954-48023973 | Msa0855010:CDS | 50.0% | |
| CCATAAGCTAGCCACTCGTA+AGG | + | chr5_4:48024000-48024019 | None:intergenic | 50.0% | |
| !! | CCTTACGAGTGGCTAGCTTA+TGG | - | chr5_4:48023997-48024016 | Msa0855010:CDS | 50.0% |
| GGGCTTCATATCTACCAGTG+TGG | + | chr5_4:48024274-48024293 | None:intergenic | 50.0% | |
| TATGAAGCCCTGCGAGTACT+TGG | - | chr5_4:48024284-48024303 | Msa0855010:intron | 50.0% | |
| GGAAGGAGGCTTGAGATTGT+TGG | - | chr5_4:48024406-48024425 | Msa0855010:intron | 50.0% | |
| TGCCACAATTACGCGACTAG+GGG | + | chr5_4:48024456-48024475 | None:intergenic | 50.0% | |
| GTGTTGGAGGCTGCAAATGA+AGG | + | chr5_4:48024488-48024507 | None:intergenic | 50.0% | |
| GCCTCCAACACCTTCATTGT+TGG | - | chr5_4:48024497-48024516 | Msa0855010:intron | 50.0% | |
| !! | GCCAACAATGAAGGTGTTGG+AGG | + | chr5_4:48024501-48024520 | None:intergenic | 50.0% |
| CCCCTCAAAGCCAACAATGA+AGG | + | chr5_4:48024510-48024529 | None:intergenic | 50.0% | |
| GCACTCCTCATCTTACAAGC+CGG | - | chr5_4:48024588-48024607 | Msa0855010:intron | 50.0% | |
| TTCTTTGCAGTGTGTGAGCC+TGG | - | chr5_4:48025204-48025223 | Msa0855010:intron | 50.0% | |
| GGCCATATACCGCTATAGCG+TGG | - | chr5_4:48022877-48022896 | Msa0855010:intron | 55.0% | |
| TTATGGGTCGGCTGGACGAA+TGG | - | chr5_4:48023962-48023981 | Msa0855010:CDS | 55.0% | |
| CTAGGGGCGGACCACAATAA+AGG | + | chr5_4:48024440-48024459 | None:intergenic | 55.0% | |
| CACAATTACGCGACTAGGGG+CGG | + | chr5_4:48024453-48024472 | None:intergenic | 55.0% | |
| !! | CATTGTTGGCTTTGAGGGGG+TGG | - | chr5_4:48024511-48024530 | Msa0855010:intron | 55.0% |
| AGCCCTGCGAGTACTTGGTC+TGG | - | chr5_4:48024289-48024308 | Msa0855010:intron | 60.0% | |
| GGCCAGACCAAGTACTCGCA+GGG | + | chr5_4:48024294-48024313 | None:intergenic | 60.0% | |
| TGGCCAGACCAAGTACTCGC+AGG | + | chr5_4:48024295-48024314 | None:intergenic | 60.0% | |
| TGCGAGTACTTGGTCTGGCC+AGG | - | chr5_4:48024294-48024313 | Msa0855010:intron | 60.0% | |
| CGCCCCTAGTCGCGTAATTG+TGG | - | chr5_4:48024451-48024470 | Msa0855010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48022447 | 48025582 | 48022447 | ID=Msa0855010;Name=Msa0855010 |
| chr5_4 | mRNA | 48022447 | 48025582 | 48022447 | ID=Msa0855010-mRNA-1;Parent=Msa0855010;Name=Msa0855010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=140|1|1|1|0.33|0.5|4|190|141 |
| chr5_4 | exon | 48022447 | 48022833 | 48022447 | ID=Msa0855010-mRNA-1:exon:15162;Parent=Msa0855010-mRNA-1 |
| chr5_4 | exon | 48023901 | 48024069 | 48023901 | ID=Msa0855010-mRNA-1:exon:15161;Parent=Msa0855010-mRNA-1 |
| chr5_4 | exon | 48024734 | 48024824 | 48024734 | ID=Msa0855010-mRNA-1:exon:15160;Parent=Msa0855010-mRNA-1 |
| chr5_4 | exon | 48025474 | 48025582 | 48025474 | ID=Msa0855010-mRNA-1:exon:15159;Parent=Msa0855010-mRNA-1 |
| chr5_4 | five_prime_UTR | 48025474 | 48025582 | 48025474 | ID=Msa0855010-mRNA-1:five_prime_utr;Parent=Msa0855010-mRNA-1 |
| chr5_4 | five_prime_UTR | 48024794 | 48024824 | 48024794 | ID=Msa0855010-mRNA-1:five_prime_utr;Parent=Msa0855010-mRNA-1 |
| chr5_4 | CDS | 48024734 | 48024793 | 48024734 | ID=Msa0855010-mRNA-1:cds;Parent=Msa0855010-mRNA-1 |
| chr5_4 | CDS | 48023901 | 48024069 | 48023901 | ID=Msa0855010-mRNA-1:cds;Parent=Msa0855010-mRNA-1 |
| chr5_4 | CDS | 48022637 | 48022833 | 48022637 | ID=Msa0855010-mRNA-1:cds;Parent=Msa0855010-mRNA-1 |
| chr5_4 | three_prime_UTR | 48022447 | 48022636 | 48022447 | ID=Msa0855010-mRNA-1:three_prime_utr;Parent=Msa0855010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
