AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0716600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716600 MtrunA17_Chr5g0404551 99.531 213 1 0 1 213 1 213 6.32e-159 437
Msa0716600 MtrunA17_Chr8g0372981 76.549 226 40 2 1 213 1 226 9.44e-128 359
Msa0716600 MtrunA17_Chr8g0345781 76.777 211 49 0 3 213 7 217 6.22e-126 354
Msa0716600 MtrunA17_Chr1g0182331 82.741 197 34 0 17 213 20 216 8.43e-126 354
Msa0716600 MtrunA17_Chr1g0200691 67.249 229 36 1 11 200 57 285 4.71e-109 314
Msa0716600 MtrunA17_Chr7g0276441 80.606 165 32 0 49 213 29 193 2.71e-99 286
Msa0716600 MtrunA17_Chr1g0210921 63.462 52 17 1 132 181 12 63 2.99e-16 72.0
Msa0716600 MtrunA17_Chr2g0280151 32.919 161 85 5 36 174 82 241 1.15e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716600 AT1G01050.1 83.249 197 33 0 17 213 16 212 9.06e-128 359
Msa0716600 AT1G01050.2 83.249 197 33 0 17 213 16 212 9.06e-128 359
Msa0716600 AT3G53620.1 83.249 197 33 0 17 213 20 216 5.65e-127 357
Msa0716600 AT2G46860.1 83.249 197 33 0 17 213 20 216 2.04e-125 353
Msa0716600 AT2G18230.1 82.564 195 34 0 19 213 24 218 8.04e-123 347
Msa0716600 AT4G01480.1 79.695 197 40 0 17 213 20 216 3.88e-121 342
Msa0716600 AT4G01480.2 79.695 197 40 0 17 213 20 216 3.88e-121 342
Msa0716600 AT5G09650.1 33.133 166 88 5 36 179 92 256 4.00e-16 75.5

Find 79 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGCAGGTGATTGAAAT+TGG 0.190283 5_1:-10065676 Msa0716600:intron
TATACGACCGACCGAATATT+TGG 0.198724 5_1:-10067777 Msa0716600:five_prime_UTR
TTCCTCCGTGCTCGTGCTAT+TGG 0.259844 5_1:-10064829 Msa0716600:CDS
TCTGTATAATGGCGGAATTC+AGG 0.260442 5_1:+10064228 None:intergenic
CTTACATAGTTGAGAGCTTA+AGG 0.321086 5_1:-10063486 Msa0716600:CDS
CAGTGATCCTATGGATGTTC+TGG 0.337131 5_1:-10064990 Msa0716600:CDS
ATTCGGTCGGTCGTATATTT+CGG 0.338961 5_1:+10067783 None:intergenic
CTTGCGCTTGTGCCAGATAC+AGG 0.352511 5_1:+10063337 None:intergenic
TAAATTTGTAGTGGAAGTAT+AGG 0.356968 5_1:-10067840 None:intergenic
CACTTGTGCTACCCTGTATC+TGG 0.364204 5_1:-10063349 Msa0716600:three_prime_UTR
CAAGACAAGTGGACTTATAA+AGG 0.377557 5_1:-10065623 Msa0716600:intron
AGTATTCTTTCATTGAGCTT+AGG 0.377855 5_1:+10066550 None:intergenic
GTATTCTTTCATTGAGCTTA+GGG 0.385169 5_1:+10066551 None:intergenic
GCTCTTTGATGTCTGTATAA+TGG 0.387260 5_1:+10064217 None:intergenic
GAGAGTAGTGAGTCAGAGTT+TGG 0.402829 5_1:+10067631 None:intergenic
TGAAATTGGCAAAGGAAGTA+AGG 0.411821 5_1:-10065662 Msa0716600:CDS
GTAGGTATTGTTTGCGAAGT+TGG 0.417270 5_1:-10066622 Msa0716600:intron
CTGTATAATGGCGGAATTCA+GGG 0.428586 5_1:+10064229 None:intergenic
AATTTAGAGATCATTGCAAT+TGG 0.430450 5_1:+10063437 None:intergenic
CCTTGGCATGATGTAGAGAT+AGG 0.436662 5_1:-10066493 Msa0716600:intron
TTGAAAACTGATGGAGCTCC+TGG 0.438536 5_1:+10065966 None:intergenic
TGAAATAAGAAGATTCTTTG+AGG 0.445984 5_1:-10064175 Msa0716600:CDS
GGATGTTCTGGTTCTGATGC+AGG 0.447786 5_1:-10064978 Msa0716600:intron
TTTGATCGGACGGTTGTGAA+TGG 0.463827 5_1:+10067740 None:intergenic
TGTGAGGTATACCAAATATT+CGG 0.466885 5_1:+10067766 None:intergenic
AGCTCACATGGAATACTTGA+TGG 0.473951 5_1:+10063663 None:intergenic
AGGATCACTGTCTTCACAAA+TGG 0.475465 5_1:+10065003 None:intergenic
AGGAAGGTGCCGGGTAGCAC+AGG 0.496025 5_1:+10064847 None:intergenic
GAACTGTTGCTGCTCACCCT+TGG 0.496264 5_1:-10066510 Msa0716600:CDS
TATTGTTTGCGAAGTTGGTA+TGG 0.496836 5_1:-10066617 Msa0716600:exon
ACGAGCACGGAGGAAGGTGC+CGG 0.501988 5_1:+10064837 None:intergenic
TGATCGTATTCTTTACTCAT+CGG 0.503153 5_1:-10065062 Msa0716600:CDS
GACACGGTCTCAGTGATGTT+AGG 0.514961 5_1:+10067805 None:intergenic
TTGTGAAGACAGTGATCCTA+TGG 0.514972 5_1:-10064999 Msa0716600:CDS
CTTACACAGTTGAAAACTGA+TGG 0.520205 5_1:+10065957 None:intergenic
AGAGTTTGGCGATGGCGACT+AGG 0.529256 5_1:+10067645 None:intergenic
AAGTAAGGTTAAGTATGAGC+TGG 0.529577 5_1:-10065647 Msa0716600:CDS
ATCATGACGGATCAAATGAA+TGG 0.532018 5_1:-10066591 Msa0716600:CDS
GCATCAACGGCAGACTCAGC+TGG 0.536658 5_1:+10063685 None:intergenic
CTGTCTTCACAAATGGTTCG+TGG 0.541096 5_1:+10065010 None:intergenic
GGAATACTTGATGGCATCAA+CGG 0.543163 5_1:+10063672 None:intergenic
GAGTTTGGCGATGGCGACTA+GGG 0.547374 5_1:+10067646 None:intergenic
GGGATAAAACCGTAGTTGTG+TGG 0.550580 5_1:+10065031 None:intergenic
CGAGCACGGAGGAAGGTGCC+GGG 0.550719 5_1:+10064838 None:intergenic
CCTATCTCTACATCATGCCA+AGG 0.552129 5_1:+10066493 None:intergenic
GAGCAGGAGCCTGTGCTACC+CGG 0.553776 5_1:-10064856 Msa0716600:intron
TATTATTGATTTAATAACGA+TGG 0.557332 5_1:+10063237 None:intergenic
AGAGCTTCCTCCACATCGGT+TGG 0.560428 5_1:-10064199 Msa0716600:CDS
GTAGCACAAGTGCCATAAAA+CGG 0.564807 5_1:+10063360 None:intergenic
GCTTCTACCTGGTCAATCAT+CGG 0.572427 5_1:+10064799 None:intergenic
GTTGTCTACCCACACAACTA+CGG 0.573385 5_1:-10065040 Msa0716600:CDS
AATTGTGGTGCAGGGTGAGA+GGG 0.573996 5_1:-10064283 Msa0716600:intron
AATAGCACGAGCACGGAGGA+AGG 0.581178 5_1:+10064831 None:intergenic
GGATAAAACCGTAGTTGTGT+GGG 0.585743 5_1:+10065032 None:intergenic
GAATACTCTCTTCAATGTCA+CGG 0.588678 5_1:-10066534 Msa0716600:CDS
TGTCTTCACAAATGGTTCGT+GGG 0.601852 5_1:+10065011 None:intergenic
ATTTCAGCCAACCGATGTGG+AGG 0.601981 5_1:+10064192 None:intergenic
CTTATTTCAGCCAACCGATG+TGG 0.603146 5_1:+10064189 None:intergenic
ACTAATGCCGATGATTGACC+AGG 0.611236 5_1:-10064806 Msa0716600:intron
GAATTGTGGTGCAGGGTGAG+AGG 0.616336 5_1:-10064284 Msa0716600:intron
TTGCGCTTGTGCCAGATACA+GGG 0.617127 5_1:+10063338 None:intergenic
AAAGAAATGACTTACAGAGT+GGG 0.619451 5_1:+10067603 None:intergenic
CGACTAGGGAAGAAGAAACA+AGG 0.631722 5_1:+10067660 None:intergenic
AGTGAGTCAGAGTTTGGCGA+TGG 0.633715 5_1:+10067637 None:intergenic
TTAGTCCAATAGCACGAGCA+CGG 0.634148 5_1:+10064824 None:intergenic
CAACTATGTAAGAAGCATAG+AGG 0.643329 5_1:+10063497 None:intergenic
TATGAGCTGGACAAGACAAG+TGG 0.645481 5_1:-10065634 Msa0716600:CDS
GTTGGTATGGCTAATCATGA+CGG 0.647306 5_1:-10066604 Msa0716600:exon
TCAAAGAGCTTCCTCCACAT+CGG 0.652320 5_1:-10064203 Msa0716600:CDS
CTTTGATGTCTGTATAATGG+CGG 0.654127 5_1:+10064220 None:intergenic
ATCAGAACCAGAACATCCAT+AGG 0.655108 5_1:+10064983 None:intergenic
CAGGTGATTGAAATTGGCAA+AGG 0.656011 5_1:-10065670 Msa0716600:CDS
AGGTATACCAAATATTCGGT+CGG 0.665791 5_1:+10067770 None:intergenic
CTATCTCTACATCATGCCAA+GGG 0.666160 5_1:+10066494 None:intergenic
ACAAGGACTTAGATCAGCGG+CGG 0.687970 5_1:+10067677 None:intergenic
TCGGTCGTATATTTCGGACA+CGG 0.716143 5_1:+10067789 None:intergenic
GAAACAAGGACTTAGATCAG+CGG 0.723420 5_1:+10067674 None:intergenic
CGGTTGTGAATGGAGATGTG+AGG 0.754829 5_1:+10067750 None:intergenic
GTCCAATAGCACGAGCACGG+AGG 0.771614 5_1:+10064827 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTAAAAACTATTTT+TGG - chr5_1:10063612-10063631 Msa0716600:intron 10.0%
!! ATTAATAAATTTGACATAAA+CGG + chr5_1:10063762-10063781 None:intergenic 10.0%
!!! AATTATTTTTTTGATAAACA+CGG + chr5_1:10064013-10064032 None:intergenic 10.0%
!!! ATATAATTTTTTTTAAATGC+AGG - chr5_1:10065054-10065073 Msa0716600:CDS 10.0%
!!! TATAATTTTTTTTAAATGCA+GGG - chr5_1:10065055-10065074 Msa0716600:CDS 10.0%
!!! TTTAATTCAGTTAAAATTTT+TGG + chr5_1:10066147-10066166 None:intergenic 10.0%
!!! ATTTTAACTGAATTAAAAAT+TGG - chr5_1:10066150-10066169 Msa0716600:intron 10.0%
!! AAATAATTAAAATAGCTATT+GGG + chr5_1:10066355-10066374 None:intergenic 10.0%
!! TAAATAATTAAAATAGCTAT+TGG + chr5_1:10066356-10066375 None:intergenic 10.0%
!! ATATAAAAAAAAGTAATCTC+AGG + chr5_1:10063727-10063746 None:intergenic 15.0%
!! AAAATTAACTAGCAAAATAT+CGG + chr5_1:10064278-10064297 None:intergenic 15.0%
!! TAAAAAAAAGAAAGATGAAA+TGG - chr5_1:10064303-10064322 Msa0716600:intron 15.0%
!! ATACAAACAAAATAGAATAT+GGG + chr5_1:10064932-10064951 None:intergenic 15.0%
!! AATACAAACAAAATAGAATA+TGG + chr5_1:10064933-10064952 None:intergenic 15.0%
!! AAACTATTTATAATGAATTG+TGG - chr5_1:10066746-10066765 Msa0716600:intron 15.0%
!! AAATTATCATTGAAAAATAG+GGG + chr5_1:10067184-10067203 None:intergenic 15.0%
!! GAAATTATCATTGAAAAATA+GGG + chr5_1:10067185-10067204 None:intergenic 15.0%
!! AGAAATTATCATTGAAAAAT+AGG + chr5_1:10067186-10067205 None:intergenic 15.0%
!!! TATTATTGATTTAATAACGA+TGG + chr5_1:10067810-10067829 None:intergenic 15.0%
!! ATGATGAAAAAACTATGTAT+TGG + chr5_1:10063475-10063494 None:intergenic 20.0%
!!! ATACATAGTTTTTTCATCAT+TGG - chr5_1:10063475-10063494 Msa0716600:exon 20.0%
!! AAAAAATAAGTCAATCCAAT+CGG - chr5_1:10063979-10063998 Msa0716600:intron 20.0%
!! ATGTATTCTTTACAAATTCA+TGG - chr5_1:10064146-10064165 Msa0716600:intron 20.0%
!!! TGAATTGATAATATGTTGAT+TGG - chr5_1:10064210-10064229 Msa0716600:CDS 20.0%
!! ACATAAATACATAATAGAAG+AGG + chr5_1:10064385-10064404 None:intergenic 20.0%
!! TTCTATTATGTATTTATGTG+AGG - chr5_1:10064386-10064405 Msa0716600:intron 20.0%
!! AATTATTTGAGCTTATTTAC+TGG + chr5_1:10064893-10064912 None:intergenic 20.0%
!! TGATTAAAAGATATAGATGT+AGG - chr5_1:10065008-10065027 Msa0716600:CDS 20.0%
!! TTCACTTAGAAAATATGAAT+AGG + chr5_1:10065336-10065355 None:intergenic 20.0%
!! ATAATACAATGGTCTATTAA+CGG + chr5_1:10065619-10065638 None:intergenic 20.0%
!! AATATCAAAAAACATGTGTT+TGG + chr5_1:10065768-10065787 None:intergenic 20.0%
!! ATTATTATCTATGAATAGCA+AGG + chr5_1:10065883-10065902 None:intergenic 20.0%
!! AATAAAATACAAAGACAAGT+AGG + chr5_1:10066276-10066295 None:intergenic 20.0%
!!! TCTTTGTATTTTATTCTGTT+TGG - chr5_1:10066281-10066300 Msa0716600:intron 20.0%
!!! CTTTGTATTTTATTCTGTTT+GGG - chr5_1:10066282-10066301 Msa0716600:intron 20.0%
!!! TTTGTATTTTATTCTGTTTG+GGG - chr5_1:10066283-10066302 Msa0716600:intron 20.0%
!! CACTAATTAAAATAGAACTA+TGG + chr5_1:10066523-10066542 None:intergenic 20.0%
!!! TAGTTCTATTTTAATTAGTG+AGG - chr5_1:10066523-10066542 Msa0716600:CDS 20.0%
!!! TTTTTATTTGATCCTTCTAA+CGG + chr5_1:10066616-10066635 None:intergenic 20.0%
!! ATAAACTAAATGCAAATAAC+AGG + chr5_1:10066902-10066921 None:intergenic 20.0%
!!! TGTTATTTGCATTTAGTTTA+TGG - chr5_1:10066901-10066920 Msa0716600:intron 20.0%
!!! ACATGAATATTTTCATTTTC+AGG - chr5_1:10067522-10067541 Msa0716600:intron 20.0%
!!! CATGAATATTTTCATTTTCA+GGG - chr5_1:10067523-10067542 Msa0716600:intron 20.0%
!! GATTAAACCAGATTTTTGAT+CGG + chr5_1:10063321-10063340 None:intergenic 25.0%
! GAAAAAACTATGTATTGGAA+TGG + chr5_1:10063470-10063489 None:intergenic 25.0%
! AAACAATGGAAATTATAGTG+TGG + chr5_1:10063506-10063525 None:intergenic 25.0%
! CACTATAATTTCCATTGTTT+CGG - chr5_1:10063506-10063525 Msa0716600:intron 25.0%
!! AAAAAATAGTACCGAAACAA+TGG + chr5_1:10063520-10063539 None:intergenic 25.0%
! AAAAAATAAGCCTGTTCAAA+CGG + chr5_1:10063813-10063832 None:intergenic 25.0%
! TTTAACTGCAATATATACTG+TGG - chr5_1:10064343-10064362 Msa0716600:intron 25.0%
! AGTTATAATGAATTTGAGCA+TGG - chr5_1:10064614-10064633 Msa0716600:intron 25.0%
!!! GCTGTTTTAATAAGCTATTT+TGG - chr5_1:10064776-10064795 Msa0716600:intron 25.0%
! AAATGTTAAGAGAATTTCCT+TGG - chr5_1:10065142-10065161 Msa0716600:intron 25.0%
!!! AGCTTATGTTGATTTATTTC+TGG - chr5_1:10065215-10065234 Msa0716600:intron 25.0%
! GTGAAATAAATGTATTTCCA+TGG - chr5_1:10065351-10065370 Msa0716600:intron 25.0%
!!! TTTTTTCCTAAAGAACATGT+AGG + chr5_1:10065482-10065501 None:intergenic 25.0%
! CTATTTCATAATCATGATCA+TGG + chr5_1:10065509-10065528 None:intergenic 25.0%
! GAAAAAAAATTGTTATGAGC+AGG - chr5_1:10066172-10066191 Msa0716600:intron 25.0%
! TTAAAAAAATCATGGCTAAG+TGG - chr5_1:10066412-10066431 Msa0716600:intron 25.0%
! AAAACCAAATGACAGATAAA+AGG + chr5_1:10066667-10066686 None:intergenic 25.0%
! AAATGTCTACTTTGATTAGT+TGG + chr5_1:10066719-10066738 None:intergenic 25.0%
! TGAAATAAGAAGATTCTTTG+AGG - chr5_1:10066869-10066888 Msa0716600:intron 25.0%
! CTAGATTTGTAGTATGAAAA+AGG + chr5_1:10067430-10067449 None:intergenic 25.0%
!!! TCATACTACAAATCTAGTTT+TGG - chr5_1:10067433-10067452 Msa0716600:intron 25.0%
! AGTAAAATCGTTGAAGATTA+AGG + chr5_1:10067467-10067486 None:intergenic 25.0%
! AATTTAGAGATCATTGCAAT+TGG + chr5_1:10067610-10067629 None:intergenic 25.0%
TGTGAGGTATACCAAATATT+CGG + chr5_1:10063281-10063300 None:intergenic 30.0%
AAAGAAATGACTTACAGAGT+GGG + chr5_1:10063444-10063463 None:intergenic 30.0%
AAAAGAAATGACTTACAGAG+TGG + chr5_1:10063445-10063464 None:intergenic 30.0%
AAGTAATTCACAACGAGTAA+GGG + chr5_1:10063684-10063703 None:intergenic 30.0%
AAAGTAATTCACAACGAGTA+AGG + chr5_1:10063685-10063704 None:intergenic 30.0%
TTACTCGTTGTGAATTACTT+TGG - chr5_1:10063684-10063703 Msa0716600:CDS 30.0%
TCTACTGCTACATCTAATTA+AGG - chr5_1:10063785-10063804 Msa0716600:intron 30.0%
CTACTGCTACATCTAATTAA+GGG - chr5_1:10063786-10063805 Msa0716600:intron 30.0%
! TGAAGATACAGTTTTCGTTA+TGG - chr5_1:10063906-10063925 Msa0716600:intron 30.0%
! TTTTTGATAAACACGGCTTA+GGG + chr5_1:10064006-10064025 None:intergenic 30.0%
!!! TTTTTTGATAAACACGGCTT+AGG + chr5_1:10064007-10064026 None:intergenic 30.0%
GTATTCTTTCATTGAGCTTA+GGG + chr5_1:10064496-10064515 None:intergenic 30.0%
AGTATTCTTTCATTGAGCTT+AGG + chr5_1:10064497-10064516 None:intergenic 30.0%
TCAACATAAGCTCCATAATT+TGG + chr5_1:10065207-10065226 None:intergenic 30.0%
GCAACTTATCAAACATAACA+TGG - chr5_1:10065237-10065256 Msa0716600:intron 30.0%
TTTGGTGGAATAATCTATCT+AGG + chr5_1:10065304-10065323 None:intergenic 30.0%
ATGAATAGGAAACAAGAGTT+TGG + chr5_1:10065322-10065341 None:intergenic 30.0%
AATAAATGTATTTCCATGGC+AGG - chr5_1:10065355-10065374 Msa0716600:intron 30.0%
AAAGTAGAGAATAGGGAATA+GGG + chr5_1:10065454-10065473 None:intergenic 30.0%
TAAAGTAGAGAATAGGGAAT+AGG + chr5_1:10065455-10065474 None:intergenic 30.0%
! GGAGTTTAAAGTAGAGAATA+GGG + chr5_1:10065461-10065480 None:intergenic 30.0%
! AGGAGTTTAAAGTAGAGAAT+AGG + chr5_1:10065462-10065481 None:intergenic 30.0%
TAAACTCCTACATGTTCTTT+AGG - chr5_1:10065473-10065492 Msa0716600:intron 30.0%
! TTGATATCATCTGACGTTTT+AGG + chr5_1:10065589-10065608 None:intergenic 30.0%
GGCATAATTTGATATTCAAG+TGG - chr5_1:10065672-10065691 Msa0716600:intron 30.0%
AGTTATAGCACTCATATCAT+CGG + chr5_1:10065741-10065760 None:intergenic 30.0%
AATCCATCATTGAGTATTCA+AGG + chr5_1:10065812-10065831 None:intergenic 30.0%
ATTGCATGTTATTGTGCTTT+AGG - chr5_1:10065835-10065854 Msa0716600:intron 30.0%
TAAAGAATACGATCAACCTA+AGG + chr5_1:10065977-10065996 None:intergenic 30.0%
TGATCGTATTCTTTACTCAT+CGG - chr5_1:10065982-10066001 Msa0716600:intron 30.0%
! TTTTGGATAAAAGTGAAAGC+AGG + chr5_1:10066130-10066149 None:intergenic 30.0%
AAAATACAAAGACAAGTAGG+AGG + chr5_1:10066273-10066292 None:intergenic 30.0%
! TGTTTTATCGTTTCAGTCAT+GGG + chr5_1:10066442-10066461 None:intergenic 30.0%
! ATGTTTTATCGTTTCAGTCA+TGG + chr5_1:10066443-10066462 None:intergenic 30.0%
ACCATGTTATATCACATACA+GGG + chr5_1:10066473-10066492 None:intergenic 30.0%
! ATGATTGAGCATGCAATTTT+TGG - chr5_1:10066554-10066573 Msa0716600:CDS 30.0%
!! AAGGAAACTTGTTATGTATG+CGG - chr5_1:10066585-10066604 Msa0716600:CDS 30.0%
TTTATAATGAATTGTGGTGC+AGG - chr5_1:10066752-10066771 Msa0716600:intron 30.0%
TTATAATGAATTGTGGTGCA+GGG - chr5_1:10066753-10066772 Msa0716600:intron 30.0%
ATCCTTGTAACAAATGTACT+TGG - chr5_1:10066924-10066943 Msa0716600:intron 30.0%
TCCTTGTAACAAATGTACTT+GGG - chr5_1:10066925-10066944 Msa0716600:intron 30.0%
!! TTTACCCATGATTGATTTTC+AGG - chr5_1:10067141-10067160 Msa0716600:intron 30.0%
TCAACCTGAAAATCAATCAT+GGG + chr5_1:10067148-10067167 None:intergenic 30.0%
TTCAACCTGAAAATCAATCA+TGG + chr5_1:10067149-10067168 None:intergenic 30.0%
GATTTGTAGTATGAAAAAGG+TGG + chr5_1:10067427-10067446 None:intergenic 30.0%
!! AACGATTTTACTTTTCCCTT+GGG - chr5_1:10067475-10067494 Msa0716600:intron 30.0%
GATAAAATAATCATCCCCAA+GGG + chr5_1:10067493-10067512 None:intergenic 30.0%
TGATAAAATAATCATCCCCA+AGG + chr5_1:10067494-10067513 None:intergenic 30.0%
! ATTTCTGTATCACCGTTTTA+TGG - chr5_1:10067672-10067691 Msa0716600:five_prime_UTR 30.0%
AGGTATACCAAATATTCGGT+CGG + chr5_1:10063277-10063296 None:intergenic 35.0%
! AAACCAGATTTTTGATCGGA+CGG + chr5_1:10063317-10063336 None:intergenic 35.0%
AGTAATTCACAACGAGTAAG+GGG + chr5_1:10063683-10063702 None:intergenic 35.0%
! TGAGGTTTTTATGCTCTTGT+AGG - chr5_1:10064404-10064423 Msa0716600:intron 35.0%
!! TATTGTTTGCGAAGTTGGTA+TGG - chr5_1:10064427-10064446 Msa0716600:intron 35.0%
!! ATCATGACGGATCAAATGAA+TGG - chr5_1:10064453-10064472 Msa0716600:intron 35.0%
GAATACTCTCTTCAATGTCA+CGG - chr5_1:10064510-10064529 Msa0716600:intron 35.0%
!!! ACCTTGCGGATGTTTTTTTT+CGG - chr5_1:10064580-10064599 Msa0716600:intron 35.0%
! TAAGCTTTGTGAGGCTATTT+GGG + chr5_1:10064867-10064886 None:intergenic 35.0%
! ATAAGCTTTGTGAGGCTATT+TGG + chr5_1:10064868-10064887 None:intergenic 35.0%
AAATAGCCTCACAAAGCTTA+TGG - chr5_1:10064867-10064886 Msa0716600:intron 35.0%
AAATAGAATATGGGCGAGTT+TGG + chr5_1:10064923-10064942 None:intergenic 35.0%
!!! TTTTTTTTAAATGCAGGGCC+AGG - chr5_1:10065060-10065079 Msa0716600:CDS 35.0%
CTTACACAGTTGAAAACTGA+TGG + chr5_1:10065090-10065109 None:intergenic 35.0%
TGGAAGTAACATTTCTTCCA+AGG + chr5_1:10065162-10065181 None:intergenic 35.0%
AATAGGAAACAAGAGTTTGG+TGG + chr5_1:10065319-10065338 None:intergenic 35.0%
TGAAATTGGCAAAGGAAGTA+AGG - chr5_1:10065382-10065401 Msa0716600:intron 35.0%
AAGTAAGGTTAAGTATGAGC+TGG - chr5_1:10065397-10065416 Msa0716600:intron 35.0%
! CAAGACAAGTGGACTTATAA+AGG - chr5_1:10065421-10065440 Msa0716600:intron 35.0%
GTTACACAACTCCACAAAAT+CGG + chr5_1:10065567-10065586 None:intergenic 35.0%
! ACAATGGTCTATTAACGGAT+AGG + chr5_1:10065614-10065633 None:intergenic 35.0%
CCCTTTCATCCTTAACTATT+GGG + chr5_1:10065654-10065673 None:intergenic 35.0%
CCCAATAGTTAAGGATGAAA+GGG - chr5_1:10065651-10065670 Msa0716600:CDS 35.0%
CATCCTTGAATACTCAATGA+TGG - chr5_1:10065806-10065825 Msa0716600:intron 35.0%
AAATGAAAAAGAGCTGTGTG+AGG - chr5_1:10066306-10066325 Msa0716600:intron 35.0%
AATGAAAAAGAGCTGTGTGA+GGG - chr5_1:10066307-10066326 Msa0716600:intron 35.0%
ACCCTGTATGTGATATAACA+TGG - chr5_1:10066469-10066488 Msa0716600:intron 35.0%
CACCATGTTATATCACATAC+AGG + chr5_1:10066474-10066493 None:intergenic 35.0%
!!! GCAATTTTTGGAGCAACAAA+AGG - chr5_1:10066566-10066585 Msa0716600:CDS 35.0%
CCAAATGACAGATAAAAGGA+GGG + chr5_1:10066663-10066682 None:intergenic 35.0%
ACCAAATGACAGATAAAAGG+AGG + chr5_1:10066664-10066683 None:intergenic 35.0%
CTTTGATGTCTGTATAATGG+CGG + chr5_1:10066827-10066846 None:intergenic 35.0%
GCTCTTTGATGTCTGTATAA+TGG + chr5_1:10066830-10066849 None:intergenic 35.0%
CCTTGTAACAAATGTACTTG+GGG - chr5_1:10066926-10066945 Msa0716600:intron 35.0%
AATTCAAATGTGTGCACTCA+TGG + chr5_1:10067079-10067098 None:intergenic 35.0%
GAAAAGAGAAATAGCTCACA+TGG + chr5_1:10067396-10067415 None:intergenic 35.0%
TATGAAAAAGGTGGAGATCA+TGG + chr5_1:10067418-10067437 None:intergenic 35.0%
!! CAACGATTTTACTTTTCCCT+TGG - chr5_1:10067474-10067493 Msa0716600:intron 35.0%
!! ACGATTTTACTTTTCCCTTG+GGG - chr5_1:10067476-10067495 Msa0716600:intron 35.0%
! CAACTATGTAAGAAGCATAG+AGG + chr5_1:10067550-10067569 None:intergenic 35.0%
CTTACATAGTTGAGAGCTTA+AGG - chr5_1:10067558-10067577 Msa0716600:intron 35.0%
ATTCGGTCGGTCGTATATTT+CGG + chr5_1:10063264-10063283 None:intergenic 40.0%
TATACGACCGACCGAATATT+TGG - chr5_1:10063267-10063286 Msa0716600:three_prime_UTR 40.0%
GAAACAAGGACTTAGATCAG+CGG + chr5_1:10063373-10063392 None:intergenic 40.0%
ACGCGATTTCAATCTCATTC+AGG + chr5_1:10063576-10063595 None:intergenic 40.0%
AATTAAGGGTCCGTTTGAAC+AGG - chr5_1:10063800-10063819 Msa0716600:intron 40.0%
ACTAGCAAAATATCGGTGAG+TGG + chr5_1:10064271-10064290 None:intergenic 40.0%
! GTAGGTATTGTTTGCGAAGT+TGG - chr5_1:10064422-10064441 Msa0716600:intron 40.0%
GTTGGTATGGCTAATCATGA+CGG - chr5_1:10064440-10064459 Msa0716600:intron 40.0%
CTATCTCTACATCATGCCAA+GGG + chr5_1:10064553-10064572 None:intergenic 40.0%
GAGATAGGTATGAAACCTTG+CGG - chr5_1:10064566-10064585 Msa0716600:intron 40.0%
ACCGAAAAAAAACATCCGCA+AGG + chr5_1:10064584-10064603 None:intergenic 40.0%
! TGTTACTTCCAGCAGCATTA+AGG - chr5_1:10065171-10065190 Msa0716600:intron 40.0%
GTTACTTCCAGCAGCATTAA+GGG - chr5_1:10065172-10065191 Msa0716600:intron 40.0%
ATTCCAGATTGCTAGTGTCA+TGG + chr5_1:10065263-10065282 None:intergenic 40.0%
CAGGTGATTGAAATTGGCAA+AGG - chr5_1:10065374-10065393 Msa0716600:intron 40.0%
TTCGTGCACGGATAATACAA+TGG + chr5_1:10065630-10065649 None:intergenic 40.0%
GCCCAATAGTTAAGGATGAA+AGG - chr5_1:10065650-10065669 Msa0716600:CDS 40.0%
GCCCTTTCATCCTTAACTAT+TGG + chr5_1:10065655-10065674 None:intergenic 40.0%
ACCGAAGCATAACTAACTCA+TGG - chr5_1:10065943-10065962 Msa0716600:intron 40.0%
CCCATGAGTTAGTTATGCTT+CGG + chr5_1:10065947-10065966 None:intergenic 40.0%
CCGAAGCATAACTAACTCAT+GGG - chr5_1:10065944-10065963 Msa0716600:intron 40.0%
! ACTCATGGGCTAAATACCTT+AGG - chr5_1:10065958-10065977 Msa0716600:intron 40.0%
GGATAAAACCGTAGTTGTGT+GGG + chr5_1:10066015-10066034 None:intergenic 40.0%
TGTCTTCACAAATGGTTCGT+GGG + chr5_1:10066036-10066055 None:intergenic 40.0%
AGGATCACTGTCTTCACAAA+TGG + chr5_1:10066044-10066063 None:intergenic 40.0%
TTGTGAAGACAGTGATCCTA+TGG - chr5_1:10066045-10066064 Msa0716600:intron 40.0%
ATCAGAACCAGAACATCCAT+AGG + chr5_1:10066064-10066083 None:intergenic 40.0%
! CCCTCCTTTTATCTGTCATT+TGG - chr5_1:10066660-10066679 Msa0716600:intron 40.0%
! CTGTATAATGGCGGAATTCA+GGG + chr5_1:10066818-10066837 None:intergenic 40.0%
! TCTGTATAATGGCGGAATTC+AGG + chr5_1:10066819-10066838 None:intergenic 40.0%
! CCCCAAGTACATTTGTTACA+AGG + chr5_1:10066929-10066948 None:intergenic 40.0%
ATGCATCAAACTAGAGGATG+TGG + chr5_1:10067272-10067291 None:intergenic 40.0%
CTCATTCTTCTTGTCTAGTG+TGG + chr5_1:10067309-10067328 None:intergenic 40.0%
! GGAATACTTGATGGCATCAA+CGG + chr5_1:10067375-10067394 None:intergenic 40.0%
AGCTCACATGGAATACTTGA+TGG + chr5_1:10067384-10067403 None:intergenic 40.0%
GTAGCACAAGTGCCATAAAA+CGG + chr5_1:10067687-10067706 None:intergenic 40.0%
TCGGTCGTATATTTCGGACA+CGG + chr5_1:10063258-10063277 None:intergenic 45.0%
TTTGATCGGACGGTTGTGAA+TGG + chr5_1:10063307-10063326 None:intergenic 45.0%
CAACCGTCCGATCAAAAATC+TGG - chr5_1:10063311-10063330 Msa0716600:three_prime_UTR 45.0%
CGACTAGGGAAGAAGAAACA+AGG + chr5_1:10063387-10063406 None:intergenic 45.0%
GAGAGTAGTGAGTCAGAGTT+TGG + chr5_1:10063416-10063435 None:intergenic 45.0%
CCTATCTCTACATCATGCCA+AGG + chr5_1:10064554-10064573 None:intergenic 45.0%
CCTTGGCATGATGTAGAGAT+AGG - chr5_1:10064551-10064570 Msa0716600:intron 45.0%
! TACTGGCCATAAGCTTTGTG+AGG + chr5_1:10064876-10064895 None:intergenic 45.0%
GAATATGGGCGAGTTTGGAT+TGG + chr5_1:10064918-10064937 None:intergenic 45.0%
TTGAAAACTGATGGAGCTCC+TGG + chr5_1:10065081-10065100 None:intergenic 45.0%
CCAATTTCAATCACCTGCCA+TGG + chr5_1:10065371-10065390 None:intergenic 45.0%
CCATGGCAGGTGATTGAAAT+TGG - chr5_1:10065368-10065387 Msa0716600:intron 45.0%
TATGAGCTGGACAAGACAAG+TGG - chr5_1:10065410-10065429 Msa0716600:intron 45.0%
CAAAATCGGAAGGTGAGATG+AGG + chr5_1:10065553-10065572 None:intergenic 45.0%
! CATCTCACCTTCCGATTTTG+TGG - chr5_1:10065553-10065572 Msa0716600:intron 45.0%
CACAACTCCACAAAATCGGA+AGG + chr5_1:10065563-10065582 None:intergenic 45.0%
TAACTATTGGGCTTCGTGCA+CGG + chr5_1:10065642-10065661 None:intergenic 45.0%
TGCACGAAGCCCAATAGTTA+AGG - chr5_1:10065642-10065661 Msa0716600:CDS 45.0%
TCATCGGAAATGCATTGCGA+GGG + chr5_1:10065725-10065744 None:intergenic 45.0%
ATCATCGGAAATGCATTGCG+AGG + chr5_1:10065726-10065745 None:intergenic 45.0%
GTTGTCTACCCACACAACTA+CGG - chr5_1:10066004-10066023 Msa0716600:intron 45.0%
GGGATAAAACCGTAGTTGTG+TGG + chr5_1:10066016-10066035 None:intergenic 45.0%
CTGTCTTCACAAATGGTTCG+TGG + chr5_1:10066037-10066056 None:intergenic 45.0%
CAGTGATCCTATGGATGTTC+TGG - chr5_1:10066054-10066073 Msa0716600:intron 45.0%
TTAGTCCAATAGCACGAGCA+CGG + chr5_1:10066223-10066242 None:intergenic 45.0%
ACTAATGCCGATGATTGACC+AGG - chr5_1:10066238-10066257 Msa0716600:intron 45.0%
GCTTCTACCTGGTCAATCAT+CGG + chr5_1:10066248-10066267 None:intergenic 45.0%
TATGCGGTAACACCGTTAGA+AGG - chr5_1:10066601-10066620 Msa0716600:CDS 45.0%
TCAAAGAGCTTCCTCCACAT+CGG - chr5_1:10066841-10066860 Msa0716600:intron 45.0%
CTTATTTCAGCCAACCGATG+TGG + chr5_1:10066858-10066877 None:intergenic 45.0%
AACAAATGTACTTGGGGCAC+TGG - chr5_1:10066932-10066951 Msa0716600:intron 45.0%
ATGTGTGCACTCATGGCAAA+TGG + chr5_1:10067072-10067091 None:intergenic 45.0%
GGACACATGCATCAAACTAG+AGG + chr5_1:10067278-10067297 None:intergenic 45.0%
! TTGTCTAGTGTGGCTAGCTA+AGG + chr5_1:10067299-10067318 None:intergenic 45.0%
!! TTAATAAATTAAAAAAATCA+TGG - chr5_1:10066404-10066423 Msa0716600:intron 5.0%
GACACGGTCTCAGTGATGTT+AGG + chr5_1:10063242-10063261 None:intergenic 50.0%
CGGTTGTGAATGGAGATGTG+AGG + chr5_1:10063297-10063316 None:intergenic 50.0%
ACAAGGACTTAGATCAGCGG+CGG + chr5_1:10063370-10063389 None:intergenic 50.0%
AGTGAGTCAGAGTTTGGCGA+TGG + chr5_1:10063410-10063429 None:intergenic 50.0%
TTCACAACGAGTAAGGGGCA+CGG + chr5_1:10063678-10063697 None:intergenic 50.0%
TTCCAGCAGCATTAAGGGCA+CGG - chr5_1:10065177-10065196 Msa0716600:intron 50.0%
GGGCACGGTCAACCAAATTA+TGG - chr5_1:10065192-10065211 Msa0716600:intron 50.0%
TGGCCATGACACTAGCAATC+TGG - chr5_1:10065257-10065276 Msa0716600:intron 50.0%
!! GGATGTTCTGGTTCTGATGC+AGG - chr5_1:10066066-10066085 Msa0716600:intron 50.0%
!! AAGAGCTGTGTGAGGGTGTT+TGG - chr5_1:10066314-10066333 Msa0716600:intron 50.0%
!! CTGTGTGAGGGTGTTTGGAA+GGG - chr5_1:10066319-10066338 Msa0716600:intron 50.0%
!! TGTGTGAGGGTGTTTGGAAG+GGG - chr5_1:10066320-10066339 Msa0716600:intron 50.0%
AATTGTGGTGCAGGGTGAGA+GGG - chr5_1:10066761-10066780 Msa0716600:intron 50.0%
ATTTCAGCCAACCGATGTGG+AGG + chr5_1:10066855-10066874 None:intergenic 50.0%
CACTTGTGCTACCCTGTATC+TGG - chr5_1:10067695-10067714 Msa0716600:five_prime_UTR 50.0%
TTGCGCTTGTGCCAGATACA+GGG + chr5_1:10067709-10067728 None:intergenic 50.0%
GAGTTTGGCGATGGCGACTA+GGG + chr5_1:10063401-10063420 None:intergenic 55.0%
AGAGTTTGGCGATGGCGACT+AGG + chr5_1:10063402-10063421 None:intergenic 55.0%
AACACGGCTTAGGGTCCGAT+TGG + chr5_1:10063997-10064016 None:intergenic 55.0%
ATCGGTGAGTGGCGCAACAT+TGG + chr5_1:10064260-10064279 None:intergenic 55.0%
GAACTGTTGCTGCTCACCCT+TGG - chr5_1:10064534-10064553 Msa0716600:intron 55.0%
AATAGCACGAGCACGGAGGA+AGG + chr5_1:10066216-10066235 None:intergenic 55.0%
TTCCTCCGTGCTCGTGCTAT+TGG - chr5_1:10066215-10066234 Msa0716600:intron 55.0%
AGTAGGAGGCAGCTTCTACC+TGG + chr5_1:10066259-10066278 None:intergenic 55.0%
!! GCTGTGTGAGGGTGTTTGGA+AGG - chr5_1:10066318-10066337 Msa0716600:intron 55.0%
!! GTGTGAGGGTGTTTGGAAGG+GGG - chr5_1:10066321-10066340 Msa0716600:intron 55.0%
!! TGTGAGGGTGTTTGGAAGGG+GGG - chr5_1:10066322-10066341 Msa0716600:intron 55.0%
GAATTGTGGTGCAGGGTGAG+AGG - chr5_1:10066760-10066779 Msa0716600:intron 55.0%
AGAGCTTCCTCCACATCGGT+TGG - chr5_1:10066845-10066864 Msa0716600:intron 55.0%
CTTGCGCTTGTGCCAGATAC+AGG + chr5_1:10067710-10067729 None:intergenic 55.0%
GACCGTGCCCTTAATGCTGC+TGG + chr5_1:10065182-10065201 None:intergenic 60.0%
GTCCAATAGCACGAGCACGG+AGG + chr5_1:10066220-10066239 None:intergenic 60.0%
! AGGGTGTTTGGAAGGGGGGA+AGG - chr5_1:10066326-10066345 Msa0716600:intron 60.0%
GCATCAACGGCAGACTCAGC+TGG + chr5_1:10067362-10067381 None:intergenic 60.0%
GAGCAGGAGCCTGTGCTACC+CGG - chr5_1:10066188-10066207 Msa0716600:intron 65.0%
!! AGGAAGGTGCCGGGTAGCAC+AGG + chr5_1:10066200-10066219 None:intergenic 65.0%
! ACGAGCACGGAGGAAGGTGC+CGG + chr5_1:10066210-10066229 None:intergenic 65.0%
!! CGAGCACGGAGGAAGGTGCC+GGG + chr5_1:10066209-10066228 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 10063216 10067850 10063216 ID=Msa0716600;Name=Msa0716600
chr5_1 mRNA 10063216 10067850 10063216 ID=Msa0716600-mRNA-1;Parent=Msa0716600;Name=Msa0716600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=253|1|1|1|0.75|0.77|9|264|213
chr5_1 exon 10063216 10063522 10063216 ID=Msa0716600-mRNA-1:exon:4044;Parent=Msa0716600-mRNA-1
chr5_1 exon 10063670 10063751 10063670 ID=Msa0716600-mRNA-1:exon:4043;Parent=Msa0716600-mRNA-1
chr5_1 exon 10064172 10064292 10064172 ID=Msa0716600-mRNA-1:exon:4042;Parent=Msa0716600-mRNA-1
chr5_1 exon 10064807 10064872 10064807 ID=Msa0716600-mRNA-1:exon:4041;Parent=Msa0716600-mRNA-1
chr5_1 exon 10064979 10065086 10064979 ID=Msa0716600-mRNA-1:exon:4040;Parent=Msa0716600-mRNA-1
chr5_1 exon 10065624 10065689 10065624 ID=Msa0716600-mRNA-1:exon:4039;Parent=Msa0716600-mRNA-1
chr5_1 exon 10065962 10065990 10065962 ID=Msa0716600-mRNA-1:exon:4038;Parent=Msa0716600-mRNA-1
chr5_1 exon 10066494 10066640 10066494 ID=Msa0716600-mRNA-1:exon:4037;Parent=Msa0716600-mRNA-1
chr5_1 exon 10067618 10067850 10067618 ID=Msa0716600-mRNA-1:exon:4036;Parent=Msa0716600-mRNA-1
chr5_1 five_prime_UTR 10067618 10067850 10067618 ID=Msa0716600-mRNA-1:five_prime_utr;Parent=Msa0716600-mRNA-1
chr5_1 five_prime_UTR 10066621 10066640 10066621 ID=Msa0716600-mRNA-1:five_prime_utr;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10066494 10066620 10066494 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10065962 10065990 10065962 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10065624 10065689 10065624 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10064979 10065086 10064979 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10064807 10064872 10064807 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10064172 10064292 10064172 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10063670 10063751 10063670 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 CDS 10063480 10063522 10063480 ID=Msa0716600-mRNA-1:cds;Parent=Msa0716600-mRNA-1
chr5_1 three_prime_UTR 10063216 10063479 10063216 ID=Msa0716600-mRNA-1:three_prime_utr;Parent=Msa0716600-mRNA-1
Gene Sequence

>Msa0716600

ATGGCTAATCATGACGGATCAAATGAATGGTCTTCGAGTTTAACTCACCCTAAGCTCAATGAAAGAATACTCTCTTCAATGTCACGGAGAACTGTTGCTGCTCACCCTTGGCATGATGTAGAGATAGGGCCAGGAGCTCCATCAGTTTTCAACTGTGTGATTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCGGTTGTCTACCCACACAACTACGGTTTTATCCCACGAACCATTTGTGAAGACAGTGATCCTATGGATGTTCTGGTTCTGATGCAGGAGCCTGTGCTACCCGGCACCTTCCTCCGTGCTCGTGCTATTGGACTAATGCCGATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGACGACCCTGAATTCCGCCATTATACAGACATCAAAGAGCTTCCTCCACATCGGTTGGCTGAAATAAGAAGATTCTTTGAGGATTACAAGAAGAATGAGAACAAAAAAGTTGATGTTGATGATTTTCTACCAGCTGAGTCTGCCGTTGATGCCATCAAGTATTCCATGGACCTCTATGCTTCTTACATAGTTGAGAGCTTAAGGAAGTGA

Protein sequence

>Msa0716600

MANHDGSNEWSSSLTHPKLNERILSSMSRRTVAAHPWHDVEIGPGAPSVFNCVIEIGKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGTFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDYKKNENKKVDVDDFLPAESAVDAIKYSMDLYASYIVESLRK*