AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129270 MtrunA17_Chr5g0404551 90.948 232 2 1 1 232 1 213 3.95e-153 424
Msa0129270 MtrunA17_Chr8g0372981 70.204 245 41 3 1 232 1 226 9.56e-122 345
Msa0129270 MtrunA17_Chr8g0345781 70.000 230 50 1 3 232 7 217 5.52e-120 340
Msa0129270 MtrunA17_Chr1g0182331 75.000 216 35 1 17 232 20 216 7.01e-120 340
Msa0129270 MtrunA17_Chr1g0200691 61.694 248 37 2 11 219 57 285 3.58e-103 300
Msa0129270 MtrunA17_Chr7g0276441 71.739 184 33 1 49 232 29 193 2.17e-93 272
Msa0129270 MtrunA17_Chr1g0210921 75.000 40 10 0 132 171 12 51 1.67e-15 70.5
Msa0129270 MtrunA17_Chr2g0280151 32.298 161 82 6 36 172 82 239 5.39e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129270 AT1G01050.1 75.463 216 34 1 17 232 16 212 9.00e-122 345
Msa0129270 AT1G01050.2 75.463 216 34 1 17 232 16 212 9.00e-122 345
Msa0129270 AT3G53620.1 75.463 216 34 1 17 232 20 216 4.21e-121 343
Msa0129270 AT2G46860.1 75.463 216 34 1 17 232 20 216 2.68e-119 338
Msa0129270 AT2G18230.1 74.766 214 35 1 19 232 24 218 7.93e-117 332
Msa0129270 AT4G01480.1 72.222 216 41 1 17 232 20 216 4.50e-115 328
Msa0129270 AT4G01480.2 72.222 216 41 1 17 232 20 216 4.50e-115 328
Msa0129270 AT5G09650.1 32.704 159 84 5 36 172 92 249 1.85e-14 71.6

Find 81 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTATTTGCATTTAGTTTA+TGG 0.065115 1_3:-59165113 Msa0129270:CDS
CCATGGCAGGTGATTGAAAT+TGG 0.190283 1_3:-59166645 Msa0129270:intron
GAAATATACGACCGAATATT+TGG 0.221040 1_3:-59168662 Msa0129270:five_prime_UTR
TTCCTCCGTGCTCGTGCTAT+TGG 0.259844 1_3:-59165800 Msa0129270:CDS
TCTGTATAATGGCGGAATTC+AGG 0.260442 1_3:+59165198 None:intergenic
CACTTGTGCTGCCCTGTATC+TGG 0.271681 1_3:-59164337 Msa0129270:three_prime_UTR
CTTACATAGTTGAGAGCTTA+AGG 0.321086 1_3:-59164474 Msa0129270:CDS
AAATATTCGGTCGTATATTT+CGG 0.327462 1_3:+59168664 None:intergenic
CAGTGATCCTATGGATGTTC+TGG 0.337131 1_3:-59165960 Msa0129270:CDS
CTTGCGCTTGTGCCAGATAC+AGG 0.358277 1_3:+59164325 None:intergenic
CAAGACAAGTGGACTTATAA+AGG 0.377557 1_3:-59166592 Msa0129270:intron
AGTATTCTTTCATTGAGCTT+AGG 0.377855 1_3:+59167518 None:intergenic
GTATTCTTTCATTGAGCTTA+GGG 0.385169 1_3:+59167519 None:intergenic
GCTCTTTGATGTCTGTATAA+TGG 0.387260 1_3:+59165187 None:intergenic
ATAAACTAAATGCAAATAAC+AGG 0.398925 1_3:+59165115 None:intergenic
GAGAGTAGTGAGTCAGAGTT+TGG 0.402829 1_3:+59168516 None:intergenic
TGAAATTGGCAAAGGAAGTA+AGG 0.411821 1_3:-59166631 Msa0129270:CDS
GTAGGTATTGTTTGCGAAGT+TGG 0.417270 1_3:-59167590 Msa0129270:intron
CTGTATAATGGCGGAATTCA+GGG 0.428586 1_3:+59165199 None:intergenic
AATTTAGAGATCATTGCAAT+TGG 0.430450 1_3:+59164425 None:intergenic
CCTTGGCATGATGTAGAGAT+AGG 0.436662 1_3:-59167461 Msa0129270:intron
TTGAAAACTGATGGAGCTCC+TGG 0.438536 1_3:+59166934 None:intergenic
TGAAATAAGAAGATTCTTTG+AGG 0.445984 1_3:-59165145 Msa0129270:CDS
GGATGTTCTGGTTCTGATGC+AGG 0.447786 1_3:-59165948 Msa0129270:intron
CTCATTCTTCTTGTCTAGTG+TGG 0.449563 1_3:+59164726 None:intergenic
AGCTCACATGGAATACTTGA+TGG 0.458073 1_3:+59164651 None:intergenic
TTTGATCGGACGGTTGTGAA+TGG 0.463827 1_3:+59168625 None:intergenic
TGTGAGGTATACCAAATATT+CGG 0.466885 1_3:+59168651 None:intergenic
AGGATCACTGTCTTCACAAA+TGG 0.475465 1_3:+59165973 None:intergenic
AGGAAGGTGCCGGGTAGCAC+AGG 0.496025 1_3:+59165818 None:intergenic
GAACTGTTGCTGCTCACCCT+TGG 0.496264 1_3:-59167478 Msa0129270:CDS
TATTGTTTGCGAAGTTGGTA+TGG 0.496836 1_3:-59167585 Msa0129270:exon
ACGAGCACGGAGGAAGGTGC+CGG 0.501988 1_3:+59165808 None:intergenic
TGATCGTATTCTTTACTCAT+CGG 0.503153 1_3:-59166032 Msa0129270:CDS
GACACGGTCTCAGTGATGTT+AGG 0.514961 1_3:+59168686 None:intergenic
TTGTGAAGACAGTGATCCTA+TGG 0.514972 1_3:-59165969 Msa0129270:CDS
TTCCAAGTACATTTGTTACA+AGG 0.515365 1_3:+59165088 None:intergenic
CTTACACAGTTGAAAACTGA+TGG 0.520205 1_3:+59166925 None:intergenic
AGAGTTTGGCGATGGCGACT+AGG 0.529256 1_3:+59168530 None:intergenic
AAGTAAGGTTAAGTATGAGC+TGG 0.529577 1_3:-59166616 Msa0129270:CDS
ATCATGACGGATCAAATGAA+TGG 0.532018 1_3:-59167559 Msa0129270:CDS
GCATCAACGGCAGACTCAGC+TGG 0.536658 1_3:+59164673 None:intergenic
TTTGTAGTGGAAGGAAGTAT+AGG 0.537651 1_3:-59168721 None:intergenic
CTGTCTTCACAAATGGTTCG+TGG 0.541096 1_3:+59165980 None:intergenic
GGAATACTTGATGGCATCAA+CGG 0.543163 1_3:+59164660 None:intergenic
GAGTTTGGCGATGGCGACTA+GGG 0.547374 1_3:+59168531 None:intergenic
GGGATAAAACCGTAGTTGTG+TGG 0.550580 1_3:+59166001 None:intergenic
CGAGCACGGAGGAAGGTGCC+GGG 0.550719 1_3:+59165809 None:intergenic
CCTATCTCTACATCATGCCA+AGG 0.552129 1_3:+59167461 None:intergenic
GAGCAGGAGCCTGTGCTACC+CGG 0.553776 1_3:-59165827 Msa0129270:intron
GCAGCACAAGTGCCATAAAA+CGG 0.556319 1_3:+59164348 None:intergenic
AGAGCTTCCTCCACATCGGT+TGG 0.560428 1_3:-59165169 Msa0129270:CDS
ACTTCTACCTGGTCAATCAT+CGG 0.565683 1_3:+59165770 None:intergenic
GTTGTCTACCCACACAACTA+CGG 0.573385 1_3:-59166010 Msa0129270:CDS
AATTGTGGTGCAGGGTGAGA+GGG 0.573996 1_3:-59165253 Msa0129270:intron
AATAGCACGAGCACGGAGGA+AGG 0.581178 1_3:+59165802 None:intergenic
GGATAAAACCGTAGTTGTGT+GGG 0.585743 1_3:+59166002 None:intergenic
GAATACTCTCTTCAATGTCA+CGG 0.588678 1_3:-59167502 Msa0129270:CDS
TGTCTTCACAAATGGTTCGT+GGG 0.601852 1_3:+59165981 None:intergenic
ATTTCAGCCAACCGATGTGG+AGG 0.601981 1_3:+59165162 None:intergenic
CTTATTTCAGCCAACCGATG+TGG 0.603146 1_3:+59165159 None:intergenic
TTGCGCTTGTGCCAGATACA+GGG 0.605822 1_3:+59164326 None:intergenic
ACTAATGCCGATGATTGACC+AGG 0.611236 1_3:-59165777 Msa0129270:intron
GAATTGTGGTGCAGGGTGAG+AGG 0.616336 1_3:-59165254 Msa0129270:intron
AAAGAAATGACTTACAGAGT+GGG 0.629081 1_3:+59168488 None:intergenic
CGACTAGGGAAGAAGAAACA+AGG 0.631722 1_3:+59168545 None:intergenic
AGTGAGTCAGAGTTTGGCGA+TGG 0.633715 1_3:+59168522 None:intergenic
TTAGTCCAATAGCACGAGCA+CGG 0.634148 1_3:+59165795 None:intergenic
CAACTATGTAAGAAGCATAG+AGG 0.643329 1_3:+59164485 None:intergenic
TATGAGCTGGACAAGACAAG+TGG 0.645481 1_3:-59166603 Msa0129270:CDS
GTTGGTATGGCTAATCATGA+CGG 0.647306 1_3:-59167572 Msa0129270:exon
TCAAAGAGCTTCCTCCACAT+CGG 0.652320 1_3:-59165173 Msa0129270:CDS
CTTTGATGTCTGTATAATGG+CGG 0.654127 1_3:+59165190 None:intergenic
ATCAGAACCAGAACATCCAT+AGG 0.655108 1_3:+59165953 None:intergenic
CAGGTGATTGAAATTGGCAA+AGG 0.656011 1_3:-59166639 Msa0129270:CDS
CTATCTCTACATCATGCCAA+GGG 0.666160 1_3:+59167462 None:intergenic
ACAAGGACTTAGATCAGCGG+CGG 0.687970 1_3:+59168562 None:intergenic
GAAACAAGGACTTAGATCAG+CGG 0.723420 1_3:+59168559 None:intergenic
TCGGTCGTATATTTCGGACA+CGG 0.733079 1_3:+59168670 None:intergenic
CGGTTGTGAATGGAGATGTG+AGG 0.754829 1_3:+59168635 None:intergenic
GTCCAATAGCACGAGCACGG+AGG 0.771614 1_3:+59165798 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTAAAAACTATTTT+TGG - chr1_3:59164521-59164540 Msa0129270:intron 10.0%
!! ATTAATAAATTTGACATAAA+CGG + chr1_3:59164671-59164690 None:intergenic 10.0%
!!! AATTATTTTTTTGATAAACA+CGG + chr1_3:59164922-59164941 None:intergenic 10.0%
!!! ATAATTTTTTTTTTAAATGC+AGG - chr1_3:59165961-59165980 Msa0129270:CDS 10.0%
!!! TAATTTTTTTTTTAAATGCA+GGG - chr1_3:59165962-59165981 Msa0129270:CDS 10.0%
!!! TTTTAATTCAGTTAAAATTT+TGG + chr1_3:59167052-59167071 None:intergenic 10.0%
!!! ATTTTAACTGAATTAAAAAT+TGG - chr1_3:59167054-59167073 Msa0129270:intron 10.0%
!! AAATAATTAAAATAGCTATT+GGG + chr1_3:59167259-59167278 None:intergenic 10.0%
!! TAAATAATTAAAATAGCTAT+TGG + chr1_3:59167260-59167279 None:intergenic 10.0%
!! TTAGTAAATTAAAAAAATCA+TGG - chr1_3:59167308-59167327 Msa0129270:intron 10.0%
!! ATATAAAAAAAAGTAATCTC+AGG + chr1_3:59164636-59164655 None:intergenic 15.0%
!! TAAAAAAAAGAAAGATGAAA+TGG - chr1_3:59165210-59165229 Msa0129270:CDS 15.0%
!! ATACAAACAAAATAGAATAT+GGG + chr1_3:59165837-59165856 None:intergenic 15.0%
!! AATACAAACAAAATAGAATA+TGG + chr1_3:59165838-59165857 None:intergenic 15.0%
!! AAACTATTTATAATGAATTG+TGG - chr1_3:59167651-59167670 Msa0129270:intron 15.0%
!! AAATTATCATTGAAAAATAG+GGG + chr1_3:59168071-59168090 None:intergenic 15.0%
!! GAAATTATCATTGAAAAATA+GGG + chr1_3:59168072-59168091 None:intergenic 15.0%
!! AGAAATTATCATTGAAAAAT+AGG + chr1_3:59168073-59168092 None:intergenic 15.0%
!! AAAAACAACATATGAAGATA+CGG - chr1_3:59164803-59164822 Msa0129270:intron 20.0%
!! AAAAAATAAGTCAATCCAAT+CGG - chr1_3:59164888-59164907 Msa0129270:intron 20.0%
!!! TGAATTGATAATATGTTGAT+TGG - chr1_3:59165117-59165136 Msa0129270:CDS 20.0%
!! AGAATTAACTAGCAAAATAT+CGG + chr1_3:59165185-59165204 None:intergenic 20.0%
!! ACATAAATACATAATAGAAG+AGG + chr1_3:59165292-59165311 None:intergenic 20.0%
!! TTCTATTATGTATTTATGTG+AGG - chr1_3:59165293-59165312 Msa0129270:intron 20.0%
!! TATTATTTGAGCTTATTTAC+TGG + chr1_3:59165798-59165817 None:intergenic 20.0%
!! TGATTAAAAGATATAGATGT+AGG - chr1_3:59165913-59165932 Msa0129270:intron 20.0%
!! AAAATGTTAGAAAATTTCCT+TGG - chr1_3:59166048-59166067 Msa0129270:intron 20.0%
!! TTCACTTAGAAAATATGAAT+AGG + chr1_3:59166242-59166261 None:intergenic 20.0%
!! AATATCAAAAAACATGTGTT+TGG + chr1_3:59166673-59166692 None:intergenic 20.0%
!! ATTATTATCTATGTATAGCA+AGG + chr1_3:59166788-59166807 None:intergenic 20.0%
!! AATAAAATACAAAGACAAGT+AGG + chr1_3:59167180-59167199 None:intergenic 20.0%
!!! TCTTTGTATTTTATTCTGTT+TGG - chr1_3:59167185-59167204 Msa0129270:intron 20.0%
!!! CTTTGTATTTTATTCTGTTT+GGG - chr1_3:59167186-59167205 Msa0129270:intron 20.0%
!!! TTTGTATTTTATTCTGTTTG+GGG - chr1_3:59167187-59167206 Msa0129270:intron 20.0%
!! CACTAATTAAAATAGAACTA+TGG + chr1_3:59167427-59167446 None:intergenic 20.0%
!!! TAGTTCTATTTTAATTAGTG+AGG - chr1_3:59167427-59167446 Msa0129270:intron 20.0%
!!! TTTTTATTTGATCCTTCTAA+CGG + chr1_3:59167520-59167539 None:intergenic 20.0%
!! ATAAACTAAATGCAAATAAC+AGG + chr1_3:59167807-59167826 None:intergenic 20.0%
!!! TGTTATTTGCATTTAGTTTA+TGG - chr1_3:59167806-59167825 Msa0129270:intron 20.0%
!!! ACATGAATATTTTCATTTTC+AGG - chr1_3:59168409-59168428 Msa0129270:intron 20.0%
!!! CATGAATATTTTCATTTTCA+GGG - chr1_3:59168410-59168429 Msa0129270:intron 20.0%
! AAATATTCGGTCGTATATTT+CGG + chr1_3:59164258-59164277 None:intergenic 25.0%
!! GATTAAACCAGATTTTTGAT+CGG + chr1_3:59164311-59164330 None:intergenic 25.0%
! GCTTAAGTTAAAAAATAAGC+CGG + chr1_3:59164731-59164750 None:intergenic 25.0%
! ATGTATTCTTTACAGATTCA+TGG - chr1_3:59165053-59165072 Msa0129270:intron 25.0%
! TTTAACTGCAATATATACTG+TGG - chr1_3:59165250-59165269 Msa0129270:intron 25.0%
! AGTTATAATGAATTTGAGCA+TGG - chr1_3:59165519-59165538 Msa0129270:intron 25.0%
!!! GCTGTTTTAATAAGCTATTT+TGG - chr1_3:59165681-59165700 Msa0129270:intron 25.0%
!!! AGCTTATGTTGATTTATTTC+TGG - chr1_3:59166121-59166140 Msa0129270:intron 25.0%
! GTGAAATAAATGTATTTCCA+TGG - chr1_3:59166257-59166276 Msa0129270:intron 25.0%
!!! TTTTTTCCTAAAGAACATGT+AGG + chr1_3:59166388-59166407 None:intergenic 25.0%
!!! CTTTTTCATAATCATGATCA+TGG + chr1_3:59166414-59166433 None:intergenic 25.0%
! ATAATACAATGGTCTATCAA+CGG + chr1_3:59166524-59166543 None:intergenic 25.0%
! GAAAAAAAATTGTTATGAGC+AGG - chr1_3:59167076-59167095 Msa0129270:intron 25.0%
! TTAAAAAAATCATGGCTAAG+TGG - chr1_3:59167316-59167335 Msa0129270:intron 25.0%
! AAAACCAAATGACAGATAAA+AGG + chr1_3:59167571-59167590 None:intergenic 25.0%
! AAATGTCTACTTTGATTAGT+TGG + chr1_3:59167623-59167642 None:intergenic 25.0%
! TGAAATAAGAAGATTCTTTG+AGG - chr1_3:59167774-59167793 Msa0129270:intron 25.0%
!!! TTTACTCATGATTGATTTTC+AGG - chr1_3:59168028-59168047 Msa0129270:intron 25.0%
! CTAGATTTGTAGTATGAAAA+AGG + chr1_3:59168317-59168336 None:intergenic 25.0%
!!! TCATACTACAAATCTAGTTT+TGG - chr1_3:59168320-59168339 Msa0129270:intron 25.0%
! AGTAAAATCGTTGAAGATTA+AGG + chr1_3:59168354-59168373 None:intergenic 25.0%
! AATTTAGAGATCATTGCAAT+TGG + chr1_3:59168497-59168516 None:intergenic 25.0%
GAAATATACGACCGAATATT+TGG - chr1_3:59164257-59164276 Msa0129270:three_prime_UTR 30.0%
TGTGAGGTATACCAAATATT+CGG + chr1_3:59164271-59164290 None:intergenic 30.0%
AAAGAAATGACTTACAGAGT+GGG + chr1_3:59164434-59164453 None:intergenic 30.0%
AAAAGAAATGACTTACAGAG+TGG + chr1_3:59164435-59164454 None:intergenic 30.0%
AAGTAATTCACAACGAGTAA+GGG + chr1_3:59164593-59164612 None:intergenic 30.0%
AAAGTAATTCACAACGAGTA+AGG + chr1_3:59164594-59164613 None:intergenic 30.0%
TTACTCGTTGTGAATTACTT+TGG - chr1_3:59164593-59164612 Msa0129270:intron 30.0%
! AAAAAATAAGCCGGTTCAAA+CGG + chr1_3:59164722-59164741 None:intergenic 30.0%
! TTTTTGATAAACACGGCTTA+GGG + chr1_3:59164915-59164934 None:intergenic 30.0%
!!! TTTTTTGATAAACACGGCTT+AGG + chr1_3:59164916-59164935 None:intergenic 30.0%
GTATTCTTTCATTGAGCTTA+GGG + chr1_3:59165403-59165422 None:intergenic 30.0%
AGTATTCTTTCATTGAGCTT+AGG + chr1_3:59165404-59165423 None:intergenic 30.0%
TCAACATAAGCTCCATAATT+TGG + chr1_3:59166113-59166132 None:intergenic 30.0%
GCAACTTATCAAACATAACA+TGG - chr1_3:59166143-59166162 Msa0129270:intron 30.0%
TTTGGTGGAATAATCTATCT+AGG + chr1_3:59166210-59166229 None:intergenic 30.0%
ATGAATAGGAAACAAGAGTT+TGG + chr1_3:59166228-59166247 None:intergenic 30.0%
AATAAATGTATTTCCATGGC+AGG - chr1_3:59166261-59166280 Msa0129270:intron 30.0%
AAAGTAGAGAATAGGGAATA+GGG + chr1_3:59166360-59166379 None:intergenic 30.0%
TAAAGTAGAGAATAGGGAAT+AGG + chr1_3:59166361-59166380 None:intergenic 30.0%
! GGAGTTTAAAGTAGAGAATA+GGG + chr1_3:59166367-59166386 None:intergenic 30.0%
! AGGAGTTTAAAGTAGAGAAT+AGG + chr1_3:59166368-59166387 None:intergenic 30.0%
TAAACTCCTACATGTTCTTT+AGG - chr1_3:59166379-59166398 Msa0129270:intron 30.0%
GGCATAATTTGATATTCAAG+TGG - chr1_3:59166577-59166596 Msa0129270:intron 30.0%
AGTTATAGCACTCATATCAT+CGG + chr1_3:59166646-59166665 None:intergenic 30.0%
AATCCAACATTGAGTATTCA+AGG + chr1_3:59166717-59166736 None:intergenic 30.0%
ATTGCATGTTATTGTGCTTT+AGG - chr1_3:59166740-59166759 Msa0129270:intron 30.0%
TAAAGAATACGATCAACCTA+AGG + chr1_3:59166882-59166901 None:intergenic 30.0%
TGATCGTATTCTTTACTCAT+CGG - chr1_3:59166887-59166906 Msa0129270:intron 30.0%
! TTTTGGATAAAAGTGAAAGC+AGG + chr1_3:59167035-59167054 None:intergenic 30.0%
AAAATACAAAGACAAGTAGG+AGG + chr1_3:59167177-59167196 None:intergenic 30.0%
! TGTTTTATCGTTTCAGTCAT+GGG + chr1_3:59167346-59167365 None:intergenic 30.0%
! ATGTTTTATCGTTTCAGTCA+TGG + chr1_3:59167347-59167366 None:intergenic 30.0%
ACCATGTTATATCACATACA+GGG + chr1_3:59167377-59167396 None:intergenic 30.0%
! ATGATTGAGCATGCAATTTT+TGG - chr1_3:59167458-59167477 Msa0129270:intron 30.0%
TTTATAATGAATTGTGGTGC+AGG - chr1_3:59167657-59167676 Msa0129270:intron 30.0%
TTATAATGAATTGTGGTGCA+GGG - chr1_3:59167658-59167677 Msa0129270:intron 30.0%
ATCCTTGTAACAAATGTACT+TGG - chr1_3:59167829-59167848 Msa0129270:intron 30.0%
! TTCCAAGTACATTTGTTACA+AGG + chr1_3:59167834-59167853 None:intergenic 30.0%
GATTTGTAGTATGAAAAAGG+TGG + chr1_3:59168314-59168333 None:intergenic 30.0%
!! AACGATTTTACTTTTCCCTT+GGG - chr1_3:59168362-59168381 Msa0129270:intron 30.0%
GATAAAATAATCATCCCCAA+GGG + chr1_3:59168380-59168399 None:intergenic 30.0%
TGATAAAATAATCATCCCCA+AGG + chr1_3:59168381-59168400 None:intergenic 30.0%
! ATTTCTGTATCACCGTTTTA+TGG - chr1_3:59168559-59168578 Msa0129270:five_prime_UTR 30.0%
! AAACCAGATTTTTGATCGGA+CGG + chr1_3:59164307-59164326 None:intergenic 35.0%
AGTAATTCACAACGAGTAAG+GGG + chr1_3:59164592-59164611 None:intergenic 35.0%
TCTCCTGCTACATCTAATTA+AGG - chr1_3:59164694-59164713 Msa0129270:CDS 35.0%
CTCCTGCTACATCTAATTAA+GGG - chr1_3:59164695-59164714 Msa0129270:CDS 35.0%
! TGAAGATACGGTTTTCGTTA+TGG - chr1_3:59164815-59164834 Msa0129270:intron 35.0%
! TGAGGTTTTTATGCTCTTGT+AGG - chr1_3:59165311-59165330 Msa0129270:intron 35.0%
!! TATTGTTTGCGAAGTTGGTA+TGG - chr1_3:59165334-59165353 Msa0129270:intron 35.0%
!! ATCATGACGGATCAAATGAA+TGG - chr1_3:59165360-59165379 Msa0129270:intron 35.0%
GAATACTCTCTTCAATGTCA+CGG - chr1_3:59165417-59165436 Msa0129270:intron 35.0%
! TAAGCTTTGTGAGGCTATTT+GGG + chr1_3:59165772-59165791 None:intergenic 35.0%
! ATAAGCTTTGTGAGGCTATT+TGG + chr1_3:59165773-59165792 None:intergenic 35.0%
AAATAGCCTCACAAAGCTTA+TGG - chr1_3:59165772-59165791 Msa0129270:intron 35.0%
AAATAGAATATGGGCGAGTT+TGG + chr1_3:59165828-59165847 None:intergenic 35.0%
!!! TTTTTTTTAAATGCAGGGCC+AGG - chr1_3:59165967-59165986 Msa0129270:CDS 35.0%
CTTACACAGTTGAAAACTGA+TGG + chr1_3:59165997-59166016 None:intergenic 35.0%
TGCAAGTAACATTTCTTCCA+AGG + chr1_3:59166068-59166087 None:intergenic 35.0%
AATAGGAAACAAGAGTTTGG+TGG + chr1_3:59166225-59166244 None:intergenic 35.0%
TGAAATTGGCAAAGGAAGTA+AGG - chr1_3:59166288-59166307 Msa0129270:intron 35.0%
AAGTAAGGTTAAGTATGAGC+TGG - chr1_3:59166303-59166322 Msa0129270:intron 35.0%
! CAAGACAAGTGGACTTATAA+AGG - chr1_3:59166327-59166346 Msa0129270:intron 35.0%
GTTACACAACTCCACAAAAT+CGG + chr1_3:59166472-59166491 None:intergenic 35.0%
! TTGACATCATCTGACGTTTT+AGG + chr1_3:59166494-59166513 None:intergenic 35.0%
CCCTTTCATCCTTAACTATT+GGG + chr1_3:59166559-59166578 None:intergenic 35.0%
CCCAATAGTTAAGGATGAAA+GGG - chr1_3:59166556-59166575 Msa0129270:intron 35.0%
CATCCTTGAATACTCAATGT+TGG - chr1_3:59166711-59166730 Msa0129270:intron 35.0%
TTCTGTTTGGGGAAATGAAA+AGG - chr1_3:59167198-59167217 Msa0129270:intron 35.0%
ACCCTGTATGTGATATAACA+TGG - chr1_3:59167373-59167392 Msa0129270:intron 35.0%
CACCATGTTATATCACATAC+AGG + chr1_3:59167378-59167397 None:intergenic 35.0%
!!! GCAATTTTTGGAGCAACAAA+AGG - chr1_3:59167470-59167489 Msa0129270:CDS 35.0%
!! AAGGAAACTTGTTGTGTATG+CGG - chr1_3:59167489-59167508 Msa0129270:CDS 35.0%
CCAAATGACAGATAAAAGGA+GGG + chr1_3:59167567-59167586 None:intergenic 35.0%
ACCAAATGACAGATAAAAGG+AGG + chr1_3:59167568-59167587 None:intergenic 35.0%
CTTTGATGTCTGTATAATGG+CGG + chr1_3:59167732-59167751 None:intergenic 35.0%
GCTCTTTGATGTCTGTATAA+TGG + chr1_3:59167735-59167754 None:intergenic 35.0%
TAACGACATGCATATGTATG+CGG + chr1_3:59167992-59168011 None:intergenic 35.0%
GAAAAGAGAAAAAGCTCACA+TGG + chr1_3:59168283-59168302 None:intergenic 35.0%
TATGAAAAAGGTGGAGATCA+TGG + chr1_3:59168305-59168324 None:intergenic 35.0%
!! CAACGATTTTACTTTTCCCT+TGG - chr1_3:59168361-59168380 Msa0129270:intron 35.0%
!! ACGATTTTACTTTTCCCTTG+GGG - chr1_3:59168363-59168382 Msa0129270:intron 35.0%
! CAACTATGTAAGAAGCATAG+AGG + chr1_3:59168437-59168456 None:intergenic 35.0%
CTTACATAGTTGAGAGCTTA+AGG - chr1_3:59168445-59168464 Msa0129270:intron 35.0%
GAAACAAGGACTTAGATCAG+CGG + chr1_3:59164363-59164382 None:intergenic 40.0%
ACGCGATTTCAATCTCATTC+AGG + chr1_3:59164485-59164504 None:intergenic 40.0%
GACCCTTAATTAGATGTAGC+AGG + chr1_3:59164700-59164719 None:intergenic 40.0%
AATTAAGGGTCCGTTTGAAC+CGG - chr1_3:59164709-59164728 Msa0129270:CDS 40.0%
ACTAGCAAAATATCGGTGAG+TGG + chr1_3:59165178-59165197 None:intergenic 40.0%
! GTAGGTATTGTTTGCGAAGT+TGG - chr1_3:59165329-59165348 Msa0129270:intron 40.0%
GTTGGTATGGCTAATCATGA+CGG - chr1_3:59165347-59165366 Msa0129270:intron 40.0%
CTATCTCTACATCATGCCAA+GGG + chr1_3:59165460-59165479 None:intergenic 40.0%
GAGATAGGTATGAAACCTTG+CGG - chr1_3:59165473-59165492 Msa0129270:intron 40.0%
TGACTGAAAAAACATCCGCA+AGG + chr1_3:59165491-59165510 None:intergenic 40.0%
! TGTTACTTGCAGCAGCATTA+AGG - chr1_3:59166077-59166096 Msa0129270:intron 40.0%
GTTACTTGCAGCAGCATTAA+GGG - chr1_3:59166078-59166097 Msa0129270:intron 40.0%
ATTCCAGATTGCTAGTGTCA+TGG + chr1_3:59166169-59166188 None:intergenic 40.0%
CAGGTGATTGAAATTGGCAA+AGG - chr1_3:59166280-59166299 Msa0129270:intron 40.0%
ACAATGGTCTATCAACGGAT+AGG + chr1_3:59166519-59166538 None:intergenic 40.0%
TTCGTGCACGGATAATACAA+TGG + chr1_3:59166535-59166554 None:intergenic 40.0%
GCCCAATAGTTAAGGATGAA+AGG - chr1_3:59166555-59166574 Msa0129270:intron 40.0%
GCCCTTTCATCCTTAACTAT+TGG + chr1_3:59166560-59166579 None:intergenic 40.0%
ACCGAAGCATAACTAACTCA+TGG - chr1_3:59166848-59166867 Msa0129270:intron 40.0%
CCCATGAGTTAGTTATGCTT+CGG + chr1_3:59166852-59166871 None:intergenic 40.0%
CCGAAGCATAACTAACTCAT+GGG - chr1_3:59166849-59166868 Msa0129270:intron 40.0%
! ACTCATGGGCTAAATACCTT+AGG - chr1_3:59166863-59166882 Msa0129270:intron 40.0%
GGATAAAACCGTAGTTGTGT+GGG + chr1_3:59166920-59166939 None:intergenic 40.0%
TGTCTTCACAAATGGTTCGT+GGG + chr1_3:59166941-59166960 None:intergenic 40.0%
AGGATCACTGTCTTCACAAA+TGG + chr1_3:59166949-59166968 None:intergenic 40.0%
TTGTGAAGACAGTGATCCTA+TGG - chr1_3:59166950-59166969 Msa0129270:intron 40.0%
ATCAGAACCAGAACATCCAT+AGG + chr1_3:59166969-59166988 None:intergenic 40.0%
ACTTCTACCTGGTCAATCAT+CGG + chr1_3:59167152-59167171 None:intergenic 40.0%
! CCCTCCTTTTATCTGTCATT+TGG - chr1_3:59167564-59167583 Msa0129270:CDS 40.0%
! CTGTATAATGGCGGAATTCA+GGG + chr1_3:59167723-59167742 None:intergenic 40.0%
! TCTGTATAATGGCGGAATTC+AGG + chr1_3:59167724-59167743 None:intergenic 40.0%
AATTCAAACGTGTGCACTCA+TGG + chr1_3:59167966-59167985 None:intergenic 40.0%
ATGCATCAAACTAGAGGATG+TGG + chr1_3:59168159-59168178 None:intergenic 40.0%
CTCATTCTTCTTGTCTAGTG+TGG + chr1_3:59168196-59168215 None:intergenic 40.0%
! GGAATACTTGATGGCATCAA+CGG + chr1_3:59168262-59168281 None:intergenic 40.0%
AGCTCACATGGAATACTTGA+TGG + chr1_3:59168271-59168290 None:intergenic 40.0%
TCGGTCGTATATTTCGGACA+CGG + chr1_3:59164252-59164271 None:intergenic 45.0%
TTTGATCGGACGGTTGTGAA+TGG + chr1_3:59164297-59164316 None:intergenic 45.0%
CAACCGTCCGATCAAAAATC+TGG - chr1_3:59164301-59164320 Msa0129270:three_prime_UTR 45.0%
CGACTAGGGAAGAAGAAACA+AGG + chr1_3:59164377-59164396 None:intergenic 45.0%
GAGAGTAGTGAGTCAGAGTT+TGG + chr1_3:59164406-59164425 None:intergenic 45.0%
CCTATCTCTACATCATGCCA+AGG + chr1_3:59165461-59165480 None:intergenic 45.0%
CCTTGGCATGATGTAGAGAT+AGG - chr1_3:59165458-59165477 Msa0129270:intron 45.0%
! TACTGGCCATAAGCTTTGTG+AGG + chr1_3:59165781-59165800 None:intergenic 45.0%
GAATATGGGCGAGTTTGGAT+TGG + chr1_3:59165823-59165842 None:intergenic 45.0%
TTGAAAACTGATGGAGCTCC+TGG + chr1_3:59165988-59166007 None:intergenic 45.0%
CCAATTTCAATCACCTGCCA+TGG + chr1_3:59166277-59166296 None:intergenic 45.0%
CCATGGCAGGTGATTGAAAT+TGG - chr1_3:59166274-59166293 Msa0129270:intron 45.0%
TATGAGCTGGACAAGACAAG+TGG - chr1_3:59166316-59166335 Msa0129270:intron 45.0%
CAAAATCGGAAGGTGAGATG+AGG + chr1_3:59166458-59166477 None:intergenic 45.0%
! CATCTCACCTTCCGATTTTG+TGG - chr1_3:59166458-59166477 Msa0129270:intron 45.0%
CACAACTCCACAAAATCGGA+AGG + chr1_3:59166468-59166487 None:intergenic 45.0%
TAACTATTGGGCTTCGTGCA+CGG + chr1_3:59166547-59166566 None:intergenic 45.0%
TGCACGAAGCCCAATAGTTA+AGG - chr1_3:59166547-59166566 Msa0129270:intron 45.0%
TCATCGGAAATGCATTGCGA+GGG + chr1_3:59166630-59166649 None:intergenic 45.0%
ATCATCGGAAATGCATTGCG+AGG + chr1_3:59166631-59166650 None:intergenic 45.0%
GTTGTCTACCCACACAACTA+CGG - chr1_3:59166909-59166928 Msa0129270:intron 45.0%
GGGATAAAACCGTAGTTGTG+TGG + chr1_3:59166921-59166940 None:intergenic 45.0%
CTGTCTTCACAAATGGTTCG+TGG + chr1_3:59166942-59166961 None:intergenic 45.0%
CAGTGATCCTATGGATGTTC+TGG - chr1_3:59166959-59166978 Msa0129270:intron 45.0%
TTAGTCCAATAGCACGAGCA+CGG + chr1_3:59167127-59167146 None:intergenic 45.0%
ACTAATGCCGATGATTGACC+AGG - chr1_3:59167142-59167161 Msa0129270:intron 45.0%
AAATGAAAAGGAGCTGCGTG+AGG - chr1_3:59167210-59167229 Msa0129270:intron 45.0%
AATGAAAAGGAGCTGCGTGA+GGG - chr1_3:59167211-59167230 Msa0129270:intron 45.0%
TATGCGGTAACACCGTTAGA+AGG - chr1_3:59167505-59167524 Msa0129270:CDS 45.0%
TCAAAGAGCTTCCTCCACAT+CGG - chr1_3:59167746-59167765 Msa0129270:intron 45.0%
CTTATTTCAGCCAACCGATG+TGG + chr1_3:59167763-59167782 None:intergenic 45.0%
GGACACATGCATCAAACTAG+AGG + chr1_3:59168165-59168184 None:intergenic 45.0%
! TTGTCTAGTGTGGCTAGCTA+AGG + chr1_3:59168186-59168205 None:intergenic 45.0%
GCAGCACAAGTGCCATAAAA+CGG + chr1_3:59168574-59168593 None:intergenic 45.0%
GACACGGTCTCAGTGATGTT+AGG + chr1_3:59164236-59164255 None:intergenic 50.0%
CGGTTGTGAATGGAGATGTG+AGG + chr1_3:59164287-59164306 None:intergenic 50.0%
ACAAGGACTTAGATCAGCGG+CGG + chr1_3:59164360-59164379 None:intergenic 50.0%
AGTGAGTCAGAGTTTGGCGA+TGG + chr1_3:59164400-59164419 None:intergenic 50.0%
TTCACAACGAGTAAGGGGCA+CGG + chr1_3:59164587-59164606 None:intergenic 50.0%
TTGCAGCAGCATTAAGGGCT+CGG - chr1_3:59166083-59166102 Msa0129270:intron 50.0%
! GGGCTCGGTCAACCAAATTA+TGG - chr1_3:59166098-59166117 Msa0129270:intron 50.0%
TGGCCATGACACTAGCAATC+TGG - chr1_3:59166163-59166182 Msa0129270:intron 50.0%
!! GGATGTTCTGGTTCTGATGC+AGG - chr1_3:59166971-59166990 Msa0129270:intron 50.0%
AGTAGGAGGCAACTTCTACC+TGG + chr1_3:59167163-59167182 None:intergenic 50.0%
AATTGTGGTGCAGGGTGAGA+GGG - chr1_3:59167666-59167685 Msa0129270:intron 50.0%
ATTTCAGCCAACCGATGTGG+AGG + chr1_3:59167760-59167779 None:intergenic 50.0%
ACGTGTGCACTCATGGCAAA+TGG + chr1_3:59167959-59167978 None:intergenic 50.0%
TTGCGCTTGTGCCAGATACA+GGG + chr1_3:59168596-59168615 None:intergenic 50.0%
GAGTTTGGCGATGGCGACTA+GGG + chr1_3:59164391-59164410 None:intergenic 55.0%
AGAGTTTGGCGATGGCGACT+AGG + chr1_3:59164392-59164411 None:intergenic 55.0%
AACACGGCTTAGGGTCCGAT+TGG + chr1_3:59164906-59164925 None:intergenic 55.0%
GAACTGTTGCTGCTCACCCT+TGG - chr1_3:59165441-59165460 Msa0129270:intron 55.0%
AATAGCACGAGCACGGAGGA+AGG + chr1_3:59167120-59167139 None:intergenic 55.0%
TTCCTCCGTGCTCGTGCTAT+TGG - chr1_3:59167119-59167138 Msa0129270:intron 55.0%
!! CTGCGTGAGGGTGTTTGGAA+GGG - chr1_3:59167223-59167242 Msa0129270:intron 55.0%
!! TGCGTGAGGGTGTTTGGAAG+GGG - chr1_3:59167224-59167243 Msa0129270:intron 55.0%
GAATTGTGGTGCAGGGTGAG+AGG - chr1_3:59167665-59167684 Msa0129270:intron 55.0%
AGAGCTTCCTCCACATCGGT+TGG - chr1_3:59167750-59167769 Msa0129270:intron 55.0%
CACTTGTGCTGCCCTGTATC+TGG - chr1_3:59168582-59168601 Msa0129270:five_prime_UTR 55.0%
CTTGCGCTTGTGCCAGATAC+AGG + chr1_3:59168597-59168616 None:intergenic 55.0%
ATCGGTGAGTGGCGCGACAT+TGG + chr1_3:59165167-59165186 None:intergenic 60.0%
GTCCAATAGCACGAGCACGG+AGG + chr1_3:59167124-59167143 None:intergenic 60.0%
!! AGGAGCTGCGTGAGGGTGTT+TGG - chr1_3:59167218-59167237 Msa0129270:intron 60.0%
!! GCTGCGTGAGGGTGTTTGGA+AGG - chr1_3:59167222-59167241 Msa0129270:intron 60.0%
!! GCGTGAGGGTGTTTGGAAGG+GGG - chr1_3:59167225-59167244 Msa0129270:intron 60.0%
!! CGTGAGGGTGTTTGGAAGGG+GGG - chr1_3:59167226-59167245 Msa0129270:intron 60.0%
! AGGGTGTTTGGAAGGGGGGA+AGG - chr1_3:59167230-59167249 Msa0129270:intron 60.0%
GCATCAACGGCAGACTCAGC+TGG + chr1_3:59168249-59168268 None:intergenic 60.0%
GAGCAGGAGCCTGTGCTACC+CGG - chr1_3:59167092-59167111 Msa0129270:intron 65.0%
!! AGGAAGGTGCCGGGTAGCAC+AGG + chr1_3:59167104-59167123 None:intergenic 65.0%
! ACGAGCACGGAGGAAGGTGC+CGG + chr1_3:59167114-59167133 None:intergenic 65.0%
!! CGAGCACGGAGGAAGGTGCC+GGG + chr1_3:59167113-59167132 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59164204 59168737 59164204 ID=Msa0129270;Name=Msa0129270
chr1_3 mRNA 59164204 59168737 59164204 ID=Msa0129270-mRNA-1;Parent=Msa0129270;Name=Msa0129270-mRNA-1;_AED=0.14;_eAED=0.14;_QI=255|0.87|0.77|1|0.87|0.88|9|264|232
chr1_3 exon 59164204 59164510 59164204 ID=Msa0129270-mRNA-1:exon:19207;Parent=Msa0129270-mRNA-1
chr1_3 exon 59164658 59164752 59164658 ID=Msa0129270-mRNA-1:exon:19206;Parent=Msa0129270-mRNA-1
chr1_3 exon 59165098 59165262 59165098 ID=Msa0129270-mRNA-1:exon:19205;Parent=Msa0129270-mRNA-1
chr1_3 exon 59165778 59165843 59165778 ID=Msa0129270-mRNA-1:exon:19204;Parent=Msa0129270-mRNA-1
chr1_3 exon 59165949 59166056 59165949 ID=Msa0129270-mRNA-1:exon:19203;Parent=Msa0129270-mRNA-1
chr1_3 exon 59166593 59166658 59166593 ID=Msa0129270-mRNA-1:exon:19202;Parent=Msa0129270-mRNA-1
chr1_3 exon 59166930 59166958 59166930 ID=Msa0129270-mRNA-1:exon:19201;Parent=Msa0129270-mRNA-1
chr1_3 exon 59167462 59167608 59167462 ID=Msa0129270-mRNA-1:exon:19200;Parent=Msa0129270-mRNA-1
chr1_3 exon 59168503 59168737 59168503 ID=Msa0129270-mRNA-1:exon:19199;Parent=Msa0129270-mRNA-1
chr1_3 five_prime_UTR 59168503 59168737 59168503 ID=Msa0129270-mRNA-1:five_prime_utr;Parent=Msa0129270-mRNA-1
chr1_3 five_prime_UTR 59167589 59167608 59167589 ID=Msa0129270-mRNA-1:five_prime_utr;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59167462 59167588 59167462 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59166930 59166958 59166930 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59166593 59166658 59166593 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59165949 59166056 59165949 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59165778 59165843 59165778 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59165098 59165262 59165098 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59164658 59164752 59164658 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 CDS 59164468 59164510 59164468 ID=Msa0129270-mRNA-1:cds;Parent=Msa0129270-mRNA-1
chr1_3 three_prime_UTR 59164204 59164467 59164204 ID=Msa0129270-mRNA-1:three_prime_utr;Parent=Msa0129270-mRNA-1
Gene Sequence

>Msa0129270

ATGGCTAATCATGACGGATCAAATGAATGGTCTTCGAGTTTAACTCACCCTAAGCTCAATGAAAGAATACTCTCTTCAATGTCACGGAGAACTGTTGCTGCTCACCCTTGGCATGATGTAGAGATAGGGCCAGGAGCTCCATCAGTTTTCAACTGTGTGATTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCGGTTGTCTACCCACACAACTACGGTTTTATCCCACGAACCATTTGTGAAGACAGTGATCCTATGGATGTTCTGGTTCTGATGCAGGAGCCTGTGCTACCCGGCACCTTCCTCCGTGCTCGTGCTATTGGACTAATGCCGATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGACGACCCTGAATTCCGCCATTATACAGACATCAAAGAGCTTCCTCCACATCGGTTGGCTGAAATAAGAAGATTCTTTGAGGATTGTATCCTGTTATTTGCATTTAGTTTATGGATCCTTGTAACAAATCTAGCCACACTAGACAAGAAGAATGAGAACAAAAAAGTTGATGTTGACGATTTTCTACCAGCTGAGTCTGCCGTTGATGCCATCAAGTATTCCATGGACCTCTATGCTTCTTACATAGTTGAGAGCTTAAGGAAGTGA

Protein sequence

>Msa0129270

MANHDGSNEWSSSLTHPKLNERILSSMSRRTVAAHPWHDVEIGPGAPSVFNCVIEIGKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGTFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDCILLFAFSLWILVTNLATLDKKNENKKVDVDDFLPAESAVDAIKYSMDLYASYIVESLRK*