Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0904950 | 0.803993 | 2.674212e-49 | -8.615850e-47 |
| Msa0681270 | Msa0904950 | 0.800770 | 1.232977e-48 | -8.615850e-47 |
| Msa0688480 | Msa0904950 | 0.800233 | 1.586922e-48 | -8.615850e-47 |
| Msa0731940 | Msa0904950 | 0.824496 | 7.823362e-54 | -8.615850e-47 |
| Msa0760130 | Msa0904950 | 0.859568 | 3.780829e-63 | -8.615850e-47 |
| Msa0766630 | Msa0904950 | 0.801255 | 9.814475e-49 | -8.615850e-47 |
| Msa0810220 | Msa0904950 | 0.807664 | 4.526124e-50 | -8.615850e-47 |
| Msa0832340 | Msa0904950 | 0.816778 | 4.639653e-52 | -8.615850e-47 |
| Msa0212990 | Msa0904950 | 0.800650 | 1.304775e-48 | -8.615850e-47 |
| Msa0213520 | Msa0904950 | 0.807848 | 4.135991e-50 | -8.615850e-47 |
| Msa0395790 | Msa0904950 | 0.836202 | 1.074532e-56 | -8.615850e-47 |
| Msa0443260 | Msa0904950 | 0.802709 | 4.933494e-49 | -8.615850e-47 |
| Msa0464680 | Msa0904950 | 0.805397 | 1.361486e-49 | -8.615850e-47 |
| Msa0479340 | Msa0904950 | 0.818996 | 1.464571e-52 | -8.615850e-47 |
| Msa0290870 | Msa0904950 | 0.802700 | 4.953030e-49 | -8.615850e-47 |
| Msa0292930 | Msa0904950 | 0.822807 | 1.943897e-53 | -8.615850e-47 |
| Msa0330340 | Msa0904950 | 0.809409 | 1.919645e-50 | -8.615850e-47 |
| Msa0331000 | Msa0904950 | 0.805163 | 1.524050e-49 | -8.615850e-47 |
| Msa0342750 | Msa0904950 | 0.817308 | 3.528341e-52 | -8.615850e-47 |
| Msa0359030 | Msa0904950 | 0.803645 | 3.158058e-49 | -8.615850e-47 |
| Msa0483150 | Msa0904950 | 0.802160 | 6.401062e-49 | -8.615850e-47 |
| Msa0585230 | Msa0904950 | 0.803332 | 3.666174e-49 | -8.615850e-47 |
| Msa0857640 | Msa0904950 | 0.807366 | 5.235116e-50 | -8.615850e-47 |
| Msa0892080 | Msa0904950 | 0.808261 | 3.378153e-50 | -8.615850e-47 |
| Msa0899450 | Msa0904950 | 0.812100 | 5.025195e-51 | -8.615850e-47 |
| Msa0904950 | Msa0925290 | 0.817158 | 3.812426e-52 | -8.615850e-47 |
| Msa0904950 | Msa0927290 | 0.804259 | 2.354286e-49 | -8.615850e-47 |
| Msa0904950 | Msa0927380 | 0.806118 | 9.605390e-50 | -8.615850e-47 |
| Msa0904950 | Msa0969520 | 0.815710 | 8.039764e-52 | -8.615850e-47 |
| Msa0904950 | Msa0976670 | 0.806382 | 8.450841e-50 | -8.615850e-47 |
| Msa0904950 | Msa0991270 | 0.812635 | 3.838560e-51 | -8.615850e-47 |
| Msa0904950 | Msa1014540 | 0.800583 | 1.346596e-48 | -8.615850e-47 |
| Msa0904950 | Msa1075650 | 0.806972 | 6.344559e-50 | -8.615850e-47 |
| Msa0904950 | Msa1081590 | 0.807490 | 4.928422e-50 | -8.615850e-47 |
| Msa0904950 | Msa1104090 | 0.800153 | 1.647319e-48 | -8.615850e-47 |
| Msa0904950 | Msa1121490 | 0.824623 | 7.302850e-54 | -8.615850e-47 |
| Msa0904950 | Msa1238930 | 0.801932 | 7.129904e-49 | -8.615850e-47 |
| Msa0904950 | Msa1277660 | 0.808925 | 2.437550e-50 | -8.615850e-47 |
| Msa0904950 | Msa1284680 | 0.812855 | 3.437084e-51 | -8.615850e-47 |
| Msa0904950 | Msa1366810 | 0.802628 | 5.125644e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTCCAATTTGGAATTA+AGG | 0.207914 | 6_2:+2691405 | Msa0904950:CDS |
| TTCAAGGAAATTGAGGTTAT+TGG | 0.210278 | 6_2:+2694880 | Msa0904950:CDS |
| TTGGGTTGTTTAGTCCAATT+TGG | 0.231297 | 6_2:+2691397 | Msa0904950:CDS |
| TCCATACCTTAATTCCAAAT+TGG | 0.238904 | 6_2:-2691411 | None:intergenic |
| ATGATTTAGGTTTATTTCAT+TGG | 0.286261 | 6_2:+2692416 | Msa0904950:intron |
| TTGAAGGAGCTTGAGCTTGC+TGG | 0.325512 | 6_2:+2692452 | Msa0904950:CDS |
| TAATTGAAATGTAGGTCATA+TGG | 0.356448 | 6_2:+2695002 | Msa0904950:intron |
| GTCAACTTTAGTTCTGCATA+AGG | 0.411531 | 6_2:-2691373 | None:intergenic |
| AAGGAATTTCAAGGAAATTG+AGG | 0.455849 | 6_2:+2694873 | Msa0904950:CDS |
| GCAGAACTAAAGTTGACATT+GGG | 0.464941 | 6_2:+2691379 | Msa0904950:CDS |
| AACTATGCTGTTGATACTGT+TGG | 0.469151 | 6_2:+2694850 | Msa0904950:CDS |
| TACTGTTGGAAGGAATTTCA+AGG | 0.487071 | 6_2:+2694864 | Msa0904950:CDS |
| TGCAGAACTAAAGTTGACAT+TGG | 0.497907 | 6_2:+2691378 | Msa0904950:CDS |
| TGGAGAAGATGCCATCTTGA+AGG | 0.505999 | 6_2:+2692436 | Msa0904950:CDS |
| TCCAGAAAACACTACATGTT+AGG | 0.512172 | 6_2:+2694803 | Msa0904950:CDS |
| GCTGGATATCAATATGTTGG+TGG | 0.528781 | 6_2:+2692470 | Msa0904950:CDS |
| AAGCTCAAGCTCCTTCAAGA+TGG | 0.578183 | 6_2:-2692447 | None:intergenic |
| CTTGCTGGATATCAATATGT+TGG | 0.605565 | 6_2:+2692467 | Msa0904950:CDS |
| ACAGCATAGTTCTTACGCAG+TGG | 0.631975 | 6_2:-2694838 | None:intergenic |
| CTGGATATCAATATGTTGGT+GGG | 0.639650 | 6_2:+2692471 | Msa0904950:CDS |
| ATGCTGTTGATACTGTTGGA+AGG | 0.657283 | 6_2:+2694854 | Msa0904950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAGGAATATT+AGG | + | chr6_2:2691670-2691689 | Msa0904950:intron | 10.0% |
| !! | AAAATTATAAATTCCAAAAA+CGG | - | chr6_2:2691893-2691912 | None:intergenic | 10.0% |
| !! | TGATTAAAAAAATGATAAAA+TGG | - | chr6_2:2692585-2692604 | None:intergenic | 10.0% |
| !!! | ATATCATTATCATAAATTTT+AGG | + | chr6_2:2692737-2692756 | Msa0904950:intron | 10.0% |
| !!! | AATTTTTTTCTTTGTTATAA+AGG | + | chr6_2:2693771-2693790 | Msa0904950:intron | 10.0% |
| !!! | TTTTGATCAATTTAATTTTA+AGG | + | chr6_2:2694193-2694212 | Msa0904950:intron | 10.0% |
| !!! | TTATATTTTAATTGAAATGT+AGG | + | chr6_2:2694994-2695013 | Msa0904950:intron | 10.0% |
| !! | AAAAAATTCATACCTAATAT+TGG | - | chr6_2:2691650-2691669 | None:intergenic | 15.0% |
| !!! | TATTTTTATTGTTTGTTGAT+AGG | + | chr6_2:2691795-2691814 | Msa0904950:intron | 15.0% |
| !!! | ATCATTTTATCATTTATGTT+AGG | + | chr6_2:2692627-2692646 | Msa0904950:intron | 15.0% |
| !!! | TATTCTATAAGCATATATTT+TGG | - | chr6_2:2693005-2693024 | None:intergenic | 15.0% |
| !! | TATACAAAATCAATCTAAAT+TGG | - | chr6_2:2694292-2694311 | None:intergenic | 15.0% |
| !!! | ATATTTTGCATCTTTAAATA+AGG | - | chr6_2:2694931-2694950 | None:intergenic | 15.0% |
| !!! | TAAGAAAGTATTCCAATATT+AGG | + | chr6_2:2691635-2691654 | Msa0904950:intron | 20.0% |
| !!! | TTTTATCTATGCTTAGTTAT+GGG | - | chr6_2:2691722-2691741 | None:intergenic | 20.0% |
| !! | TTTCCATAAAAAAAAATGTG+TGG | + | chr6_2:2691763-2691782 | Msa0904950:intron | 20.0% |
| !! | GTGAATCAAAATAAAACAAA+TGG | - | chr6_2:2692277-2692296 | None:intergenic | 20.0% |
| !! | GATATATGTTATCATGATTT+AGG | + | chr6_2:2692403-2692422 | Msa0904950:intron | 20.0% |
| !!! | ATGATTTAGGTTTATTTCAT+TGG | + | chr6_2:2692416-2692435 | Msa0904950:intron | 20.0% |
| !! | TTAAATACTTAAAGAAGAAC+AGG | - | chr6_2:2692536-2692555 | None:intergenic | 20.0% |
| !! | TTGAAAGAAAAAGATACAAT+TGG | + | chr6_2:2692697-2692716 | Msa0904950:intron | 20.0% |
| !! | TGAAAGAAAAAGATACAATT+GGG | + | chr6_2:2692698-2692717 | Msa0904950:intron | 20.0% |
| !!! | GTTCATAACTTATTTTTGTA+AGG | - | chr6_2:2693554-2693573 | None:intergenic | 20.0% |
| !!! | TGAAGACTTTTCAAAAAATA+TGG | - | chr6_2:2693752-2693771 | None:intergenic | 20.0% |
| !! | GGATATAATATTATATTCTC+TGG | + | chr6_2:2693825-2693844 | Msa0904950:intron | 20.0% |
| !!! | AATTTAAAATAACTACCAAC+AGG | - | chr6_2:2693951-2693970 | None:intergenic | 20.0% |
| !!! | TGTTGGTAGTTATTTTAAAT+TGG | + | chr6_2:2693950-2693969 | Msa0904950:intron | 20.0% |
| !! | AATCTATCAATTATAGTCTT+TGG | + | chr6_2:2694027-2694046 | Msa0904950:intron | 20.0% |
| !! | TTGTTGACATAAGTAAATAT+TGG | + | chr6_2:2694148-2694167 | Msa0904950:intron | 20.0% |
| !! | TGTTGACATAAGTAAATATT+GGG | + | chr6_2:2694149-2694168 | Msa0904950:intron | 20.0% |
| !! | TTTAGTCCAATTTGGAATTA+AGG | + | chr6_2:2691405-2691424 | Msa0904950:CDS | 25.0% |
| ! | CAAATTAGAAGTAGTAGAAA+TGG | - | chr6_2:2691463-2691482 | None:intergenic | 25.0% |
| ! | ATATCTAATTTCTTCCAACA+GGG | - | chr6_2:2691537-2691556 | None:intergenic | 25.0% |
| !! | TTTTATCTTCTAATGAGATC+TGG | + | chr6_2:2691609-2691628 | Msa0904950:intron | 25.0% |
| !! | GTTTTATCTATGCTTAGTTA+TGG | - | chr6_2:2691723-2691742 | None:intergenic | 25.0% |
| !!! | AGTCCACACATTTTTTTTTA+TGG | - | chr6_2:2691769-2691788 | None:intergenic | 25.0% |
| !!! | TTAATTCCTCCTCATTTTTT+TGG | + | chr6_2:2691854-2691873 | Msa0904950:intron | 25.0% |
| !!! | CTTTCTAAAACTTCTTTGTT+TGG | + | chr6_2:2692336-2692355 | Msa0904950:intron | 25.0% |
| ! | AGTATTTAATTCTGATCACT+TGG | + | chr6_2:2692547-2692566 | Msa0904950:intron | 25.0% |
| !!! | TGATTTTGGTTTGTTTTCTT+TGG | + | chr6_2:2693396-2693415 | Msa0904950:intron | 25.0% |
| !!! | GATTTTGGTTTGTTTTCTTT+GGG | + | chr6_2:2693397-2693416 | Msa0904950:intron | 25.0% |
| ! | TTATGTAGTCTCAAAACTAT+AGG | + | chr6_2:2693524-2693543 | Msa0904950:intron | 25.0% |
| ! | AAATAAGTTATGAACCTTAG+TGG | + | chr6_2:2693559-2693578 | Msa0904950:intron | 25.0% |
| ! | TGTATTTGTGAGTATAAGTT+TGG | + | chr6_2:2693672-2693691 | Msa0904950:intron | 25.0% |
| !! | TTATAGTCTTTGGAAAAACA+TGG | + | chr6_2:2694037-2694056 | Msa0904950:intron | 25.0% |
| ! | GTTGACATAAGTAAATATTG+GGG | + | chr6_2:2694150-2694169 | Msa0904950:intron | 25.0% |
| ! | TGGTGTGTATTTATATATGT+AGG | + | chr6_2:2694361-2694380 | Msa0904950:intron | 25.0% |
| ! | GGTGTGTATTTATATATGTA+GGG | + | chr6_2:2694362-2694381 | Msa0904950:intron | 25.0% |
| !! | GTTGATACCTATAATTTTGA+AGG | - | chr6_2:2694409-2694428 | None:intergenic | 25.0% |
| !! | TTTATATGGTTAGTCATTGT+TGG | + | chr6_2:2694698-2694717 | Msa0904950:intron | 25.0% |
| !! | TTATATGGTTAGTCATTGTT+GGG | + | chr6_2:2694699-2694718 | Msa0904950:intron | 25.0% |
| !!! | CAGTTTTGGTGTTATAAAAA+TGG | - | chr6_2:2694751-2694770 | None:intergenic | 25.0% |
| !!! | GTTATTGGTTTGTTAAGTTT+TGG | + | chr6_2:2694895-2694914 | Msa0904950:intron | 25.0% |
| ! | TAATTGAAATGTAGGTCATA+TGG | + | chr6_2:2695002-2695021 | Msa0904950:intron | 25.0% |
| ! | TCCAATTTGGAATTAAGGTA+TGG | + | chr6_2:2691410-2691429 | Msa0904950:intron | 30.0% |
| TCCATACCTTAATTCCAAAT+TGG | - | chr6_2:2691414-2691433 | None:intergenic | 30.0% | |
| TATCTAATTTCTTCCAACAG+GGG | - | chr6_2:2691536-2691555 | None:intergenic | 30.0% | |
| CATATCTAATTTCTTCCAAC+AGG | - | chr6_2:2691538-2691557 | None:intergenic | 30.0% | |
| AGTAATGAGAAATTGTGTGT+AGG | - | chr6_2:2691589-2691608 | None:intergenic | 30.0% | |
| AGGAGGAATTAATTAATTGC+AGG | - | chr6_2:2691846-2691865 | None:intergenic | 30.0% | |
| CAACAACAACCAAAAAAATG+AGG | - | chr6_2:2691866-2691885 | None:intergenic | 30.0% | |
| ATTGAAACGATTCAAGATAG+AGG | - | chr6_2:2691987-2692006 | None:intergenic | 30.0% | |
| ACAAGCTTTCAAATTCAGAT+TGG | + | chr6_2:2692020-2692039 | Msa0904950:intron | 30.0% | |
| !! | AAATTCAGATTGGCTTTGTA+AGG | + | chr6_2:2692030-2692049 | Msa0904950:intron | 30.0% |
| ! | GACTTTTAAATTGTGGATGT+CGG | + | chr6_2:2692072-2692091 | Msa0904950:intron | 30.0% |
| CAGAATTGAAATTGAAGTAG+CGG | - | chr6_2:2692147-2692166 | None:intergenic | 30.0% | |
| TTCAATTTCAATTCTGCCTT+TGG | + | chr6_2:2692151-2692170 | Msa0904950:intron | 30.0% | |
| CGAACAAATTCTATCGTAAA+CGG | - | chr6_2:2692190-2692209 | None:intergenic | 30.0% | |
| !! | TTCTTTGTTTGGCCTTTTAA+TGG | + | chr6_2:2692347-2692366 | Msa0904950:intron | 30.0% |
| GCAAATGCAAATCCATTAAA+AGG | - | chr6_2:2692362-2692381 | None:intergenic | 30.0% | |
| TATACAAACTCAATACATGC+TGG | - | chr6_2:2692497-2692516 | None:intergenic | 30.0% | |
| ! | TCATTTTGTCTCATTCTGTT+AGG | + | chr6_2:2692654-2692673 | Msa0904950:intron | 30.0% |
| ! | CAATAAGAAGCATGGAATAA+AGG | - | chr6_2:2692931-2692950 | None:intergenic | 30.0% |
| TTGATACTCAATAAGAAGCA+TGG | - | chr6_2:2692939-2692958 | None:intergenic | 30.0% | |
| !!! | TTTTGGAGTTATGCTAACTA+AGG | - | chr6_2:2692988-2693007 | None:intergenic | 30.0% |
| !! | TTTTCTGCATAATTTAGAGC+TGG | + | chr6_2:2693120-2693139 | Msa0904950:intron | 30.0% |
| !!! | CATAATTTAGAGCTGGTTTT+CGG | + | chr6_2:2693127-2693146 | Msa0904950:intron | 30.0% |
| AAAAAACTCTGTTATGTAGC+AGG | - | chr6_2:2693196-2693215 | None:intergenic | 30.0% | |
| ! | TTATTTGCTTCTCTTTTCCT+TGG | + | chr6_2:2693266-2693285 | Msa0904950:intron | 30.0% |
| ! | TTTTAACCGACTGTTTGTAT+TGG | + | chr6_2:2693320-2693339 | Msa0904950:intron | 30.0% |
| !! | CTCTTTAGTGTAGTTGATTT+TGG | + | chr6_2:2693382-2693401 | Msa0904950:intron | 30.0% |
| ATGATCATTGAAGAACTTCT+TGG | + | chr6_2:2693632-2693651 | Msa0904950:intron | 30.0% | |
| TGATCATTGAAGAACTTCTT+GGG | + | chr6_2:2693633-2693652 | Msa0904950:intron | 30.0% | |
| GCAAAGAAAGAACATTCAAA+CGG | - | chr6_2:2694228-2694247 | None:intergenic | 30.0% | |
| TTGAATGTTCTTTCTTTGCT+TGG | + | chr6_2:2694229-2694248 | Msa0904950:intron | 30.0% | |
| !! | CTATAATTTTGAAGGCATGT+TGG | - | chr6_2:2694401-2694420 | None:intergenic | 30.0% |
| CAACATGCCTTCAAAATTAT+AGG | + | chr6_2:2694399-2694418 | Msa0904950:intron | 30.0% | |
| CAAAATTATAGGTATCAACC+TGG | + | chr6_2:2694410-2694429 | Msa0904950:intron | 30.0% | |
| TGGATTATGCAATAAGGAAT+CGG | + | chr6_2:2694430-2694449 | Msa0904950:intron | 30.0% | |
| ATCAAGTTTGCATTCAAACT+TGG | - | chr6_2:2694574-2694593 | None:intergenic | 30.0% | |
| CAAACAAATGCAAACATACA+AGG | + | chr6_2:2694616-2694635 | Msa0904950:intron | 30.0% | |
| GTTGGCGTAGATTATTTATA+TGG | + | chr6_2:2694684-2694703 | Msa0904950:intron | 30.0% | |
| ! | TATATGGTTAGTCATTGTTG+GGG | + | chr6_2:2694700-2694719 | Msa0904950:intron | 30.0% |
| ! | TTTTATAACACCAAAACTGC+TGG | + | chr6_2:2694752-2694771 | Msa0904950:intron | 30.0% |
| AAGGAATTTCAAGGAAATTG+AGG | + | chr6_2:2694873-2694892 | Msa0904950:CDS | 30.0% | |
| TTCAAGGAAATTGAGGTTAT+TGG | + | chr6_2:2694880-2694899 | Msa0904950:CDS | 30.0% | |
| !! | GTCAACTTTAGTTCTGCATA+AGG | - | chr6_2:2691376-2691395 | None:intergenic | 35.0% |
| TGCAGAACTAAAGTTGACAT+TGG | + | chr6_2:2691378-2691397 | Msa0904950:CDS | 35.0% | |
| GCAGAACTAAAGTTGACATT+GGG | + | chr6_2:2691379-2691398 | Msa0904950:CDS | 35.0% | |
| ! | TTGGGTTGTTTAGTCCAATT+TGG | + | chr6_2:2691397-2691416 | Msa0904950:CDS | 35.0% |
| CAACAACCAAAAAAATGAGG+AGG | - | chr6_2:2691863-2691882 | None:intergenic | 35.0% | |
| !! | TTGTTGTTGATCTCCGTTTT+TGG | + | chr6_2:2691877-2691896 | Msa0904950:intron | 35.0% |
| CTTGAATCGTTTCAATGCAT+TGG | + | chr6_2:2691991-2692010 | Msa0904950:intron | 35.0% | |
| !! | AAGGCTTTGAATCATATGTG+AGG | + | chr6_2:2692049-2692068 | Msa0904950:intron | 35.0% |
| !! | AGGCTTTGAATCATATGTGA+GGG | + | chr6_2:2692050-2692069 | Msa0904950:intron | 35.0% |
| ! | TGTGAGGGACTTTTAAATTG+TGG | + | chr6_2:2692065-2692084 | Msa0904950:intron | 35.0% |
| CAAATGGTCCATAAAGAAGA+GGG | - | chr6_2:2692261-2692280 | None:intergenic | 35.0% | |
| ACAAATGGTCCATAAAGAAG+AGG | - | chr6_2:2692262-2692281 | None:intergenic | 35.0% | |
| CTTGCTGGATATCAATATGT+TGG | + | chr6_2:2692467-2692486 | Msa0904950:CDS | 35.0% | |
| CTGGATATCAATATGTTGGT+GGG | + | chr6_2:2692471-2692490 | Msa0904950:CDS | 35.0% | |
| TGTGCTTAACTATTCAGAGT+TGG | + | chr6_2:2693054-2693073 | Msa0904950:intron | 35.0% | |
| ! | AACTATTCAGAGTTGGTTCA+AGG | + | chr6_2:2693061-2693080 | Msa0904950:intron | 35.0% |
| ! | AGACAAATCAGAAGGTATAG+AGG | - | chr6_2:2693219-2693238 | None:intergenic | 35.0% |
| !!! | TTGGTTTGTTTTCTTTGGGA+TGG | + | chr6_2:2693401-2693420 | Msa0904950:intron | 35.0% |
| GATGGTTTCTTATGTTCTCT+TGG | + | chr6_2:2693419-2693438 | Msa0904950:intron | 35.0% | |
| ! | TCTCTTGGTTCTTATTTCCT+TGG | + | chr6_2:2693434-2693453 | Msa0904950:intron | 35.0% |
| ! | CTCTTGGTTCTTATTTCCTT+GGG | + | chr6_2:2693435-2693454 | Msa0904950:intron | 35.0% |
| TCACAACAACTAATCCACTA+AGG | - | chr6_2:2693576-2693595 | None:intergenic | 35.0% | |
| GATCATTGAAGAACTTCTTG+GGG | + | chr6_2:2693634-2693653 | Msa0904950:intron | 35.0% | |
| TTGTGTAAGTCAACTGACAA+AGG | + | chr6_2:2693700-2693719 | Msa0904950:intron | 35.0% | |
| ! | TTGTCAGCTTCATAGGTTTT+AGG | + | chr6_2:2693804-2693823 | Msa0904950:intron | 35.0% |
| ! | TGGATTTTGAACAACTCAGT+TGG | + | chr6_2:2693845-2693864 | Msa0904950:intron | 35.0% |
| CATGTCGTCTTCAATTGATA+TGG | - | chr6_2:2693888-2693907 | None:intergenic | 35.0% | |
| TGAAATAAATGTGCTCCTGT+TGG | + | chr6_2:2693933-2693952 | Msa0904950:intron | 35.0% | |
| !!! | TTGGGGTTTTGAGTCTATTT+TGG | + | chr6_2:2694167-2694186 | Msa0904950:intron | 35.0% |
| !! | TCAAAGAGCATTACTTTGTG+TGG | + | chr6_2:2694266-2694285 | Msa0904950:intron | 35.0% |
| TGCACATGATTTGAAAGATG+TGG | + | chr6_2:2694341-2694360 | Msa0904950:intron | 35.0% | |
| TCAACCTGGATTATGCAATA+AGG | + | chr6_2:2694424-2694443 | Msa0904950:intron | 35.0% | |
| GATTCCTTATTGCATAATCC+AGG | - | chr6_2:2694431-2694450 | None:intergenic | 35.0% | |
| GTGCAGTTTATGTCATATGT+TGG | + | chr6_2:2694481-2694500 | Msa0904950:intron | 35.0% | |
| CAGTTTATGTCATATGTTGG+TGG | + | chr6_2:2694484-2694503 | Msa0904950:intron | 35.0% | |
| AATGCAAACATACAAGGATG+AGG | + | chr6_2:2694622-2694641 | Msa0904950:intron | 35.0% | |
| AAGGCTTCATAAGCAATAGT+TGG | + | chr6_2:2694652-2694671 | Msa0904950:intron | 35.0% | |
| !! | AATAGTTGGTGCTAATCTGT+TGG | + | chr6_2:2694666-2694685 | Msa0904950:intron | 35.0% |
| TGGATCAAATTCAAAATGCC+TGG | - | chr6_2:2694787-2694806 | None:intergenic | 35.0% | |
| TCCAGAAAACACTACATGTT+AGG | + | chr6_2:2694803-2694822 | Msa0904950:CDS | 35.0% | |
| AACTATGCTGTTGATACTGT+TGG | + | chr6_2:2694850-2694869 | Msa0904950:CDS | 35.0% | |
| TACTGTTGGAAGGAATTTCA+AGG | + | chr6_2:2694864-2694883 | Msa0904950:CDS | 35.0% | |
| !!! | TTGGTTTGTTAAGTTTTGGC+AGG | + | chr6_2:2694899-2694918 | Msa0904950:intron | 35.0% |
| CACTTTATCTATTCCCCTGT+TGG | + | chr6_2:2691520-2691539 | Msa0904950:intron | 40.0% | |
| TTGAAATTGAAGTAGCGGCA+CGG | - | chr6_2:2692142-2692161 | None:intergenic | 40.0% | |
| TCAAGCATGCAACAACGATT+AGG | - | chr6_2:2692230-2692249 | None:intergenic | 40.0% | |
| ATCCATGACCCTCTTCTTTA+TGG | + | chr6_2:2692250-2692269 | Msa0904950:intron | 40.0% | |
| GCTGGATATCAATATGTTGG+TGG | + | chr6_2:2692470-2692489 | Msa0904950:CDS | 40.0% | |
| AGTTCGTGAGATTGATATCG+AGG | + | chr6_2:2692770-2692789 | Msa0904950:intron | 40.0% | |
| GAACACAGAGACAAATCAGA+AGG | - | chr6_2:2693227-2693246 | None:intergenic | 40.0% | |
| !! | TCCTTGGTCTTCAAGTGTTT+TGG | + | chr6_2:2693282-2693301 | Msa0904950:intron | 40.0% |
| AGGACACCAATACAAACAGT+CGG | - | chr6_2:2693329-2693348 | None:intergenic | 40.0% | |
| CAGAGTAGGTTGTTGTAGTT+TGG | + | chr6_2:2693359-2693378 | Msa0904950:intron | 40.0% | |
| GTAGCACTAAAAGAAACCCA+AGG | - | chr6_2:2693454-2693473 | None:intergenic | 40.0% | |
| ! | TGTGTTGTTGTCAGCTTCAT+AGG | + | chr6_2:2693797-2693816 | Msa0904950:intron | 40.0% |
| ! | ATATATGTAGGGAGAGTGTG+TGG | + | chr6_2:2694373-2694392 | Msa0904950:intron | 40.0% |
| ! | ATGTCATATGTTGGTGGAAG+TGG | + | chr6_2:2694490-2694509 | Msa0904950:intron | 40.0% |
| ACAAGGATGAGGCAAACAAA+AGG | + | chr6_2:2694633-2694652 | Msa0904950:intron | 40.0% | |
| ATAACACCAAAACTGCTGGT+TGG | + | chr6_2:2694756-2694775 | Msa0904950:intron | 40.0% | |
| ! | GCCTAACATGTAGTGTTTTC+TGG | - | chr6_2:2694807-2694826 | None:intergenic | 40.0% |
| ATGCTGTTGATACTGTTGGA+AGG | + | chr6_2:2694854-2694873 | Msa0904950:CDS | 40.0% | |
| CGGCTAAACAGAAACACCAA+AGG | - | chr6_2:2692170-2692189 | None:intergenic | 45.0% | |
| GTCCATAAAGAAGAGGGTCA+TGG | - | chr6_2:2692255-2692274 | None:intergenic | 45.0% | |
| TGGAGAAGATGCCATCTTGA+AGG | + | chr6_2:2692436-2692455 | Msa0904950:CDS | 45.0% | |
| AAGCTCAAGCTCCTTCAAGA+TGG | - | chr6_2:2692450-2692469 | None:intergenic | 45.0% | |
| CATAATTTCGAGCGAAGTCG+AGG | + | chr6_2:2693094-2693113 | Msa0904950:intron | 45.0% | |
| GGACTAATGTAATGCAGCAG+CGG | + | chr6_2:2693155-2693174 | Msa0904950:intron | 45.0% | |
| TAAAACCGACATGTTGCAGC+TGG | - | chr6_2:2693249-2693268 | None:intergenic | 45.0% | |
| GCCAAAACACTTGAAGACCA+AGG | - | chr6_2:2693286-2693305 | None:intergenic | 45.0% | |
| !!! | TCCTGCTGCTTTTTCAGAGT+AGG | + | chr6_2:2693345-2693364 | Msa0904950:intron | 45.0% |
| ! | ACCTACTCTGAAAAAGCAGC+AGG | - | chr6_2:2693349-2693368 | None:intergenic | 45.0% |
| TTGTTGTGAGCAGCATGTCA+AGG | + | chr6_2:2693587-2693606 | Msa0904950:intron | 45.0% | |
| GATATGGAATGAGCCATGCT+TGG | - | chr6_2:2693872-2693891 | None:intergenic | 45.0% | |
| ACAGCATAGTTCTTACGCAG+TGG | - | chr6_2:2694841-2694860 | None:intergenic | 45.0% | |
| !!! | GAATTTTTTTTTTTTTTTTA+AGG | + | chr6_2:2691661-2691680 | Msa0904950:intron | 5.0% |
| GTATGTTATGCTGCGCTGTG+TGG | + | chr6_2:2692096-2692115 | Msa0904950:intron | 50.0% | |
| TTGAAGGAGCTTGAGCTTGC+TGG | + | chr6_2:2692452-2692471 | Msa0904950:CDS | 50.0% | |
| !!! | TAGAGCTGGTTTTCGGCATG+TGG | + | chr6_2:2693134-2693153 | Msa0904950:intron | 50.0% |
| ! | GTAATGCAGCAGCGGTGTTT+TGG | + | chr6_2:2693163-2693182 | Msa0904950:intron | 50.0% |
| GTGTTCCAGCTGCAACATGT+CGG | + | chr6_2:2693241-2693260 | Msa0904950:intron | 50.0% | |
| CAACTCAGTTGGACCAAGCA+TGG | + | chr6_2:2693856-2693875 | Msa0904950:intron | 50.0% | |
| ! | GACACACCAACCAGCAGTTT+TGG | - | chr6_2:2694765-2694784 | None:intergenic | 50.0% |
| ! | AACTGCTGGTTGGTGTGTCC+AGG | + | chr6_2:2694766-2694785 | Msa0904950:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 2691352 | 2695035 | 2691352 | ID=Msa0904950;Name=Msa0904950 |
| chr6_2 | mRNA | 2691352 | 2695035 | 2691352 | ID=Msa0904950-mRNA-1;Parent=Msa0904950;Name=Msa0904950-mRNA-1;_AED=0.64;_eAED=0.79;_QI=0|0|0|0.5|1|1|4|0|94 |
| chr6_2 | exon | 2691352 | 2691426 | 2691352 | ID=Msa0904950-mRNA-1:exon:909;Parent=Msa0904950-mRNA-1 |
| chr6_2 | exon | 2692425 | 2692500 | 2692425 | ID=Msa0904950-mRNA-1:exon:910;Parent=Msa0904950-mRNA-1 |
| chr6_2 | exon | 2694788 | 2694901 | 2694788 | ID=Msa0904950-mRNA-1:exon:911;Parent=Msa0904950-mRNA-1 |
| chr6_2 | exon | 2695016 | 2695035 | 2695016 | ID=Msa0904950-mRNA-1:exon:912;Parent=Msa0904950-mRNA-1 |
| chr6_2 | CDS | 2691352 | 2691426 | 2691352 | ID=Msa0904950-mRNA-1:cds;Parent=Msa0904950-mRNA-1 |
| chr6_2 | CDS | 2692425 | 2692500 | 2692425 | ID=Msa0904950-mRNA-1:cds;Parent=Msa0904950-mRNA-1 |
| chr6_2 | CDS | 2694788 | 2694901 | 2694788 | ID=Msa0904950-mRNA-1:cds;Parent=Msa0904950-mRNA-1 |
| chr6_2 | CDS | 2695016 | 2695035 | 2695016 | ID=Msa0904950-mRNA-1:cds;Parent=Msa0904950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
