AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0991270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0991270 MtrunA17_Chr2g0306601 53.968 63 22 2 22 84 115 170 1.60e-13 62.0
Msa0991270 MtrunA17_Chr8g0341391 55.769 52 23 0 33 84 236 287 6.25e-13 62.0
Msa0991270 MtrunA17_Chr7g0226631 58.000 50 21 0 35 84 142 191 1.56e-12 59.7
Msa0991270 MtrunA17_Chr2g0306611 47.619 63 26 1 29 84 649 711 2.14e-11 57.8
Msa0991270 MtrunA17_Chr6g0474441 55.556 45 20 0 40 84 529 573 8.53e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 629 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCAAACATTGCAACTATT+TGG 0.232285 6_4:+55126830 None:intergenic
GGGCGACCGCCCGGGGTCGC+CGG 0.267437 6_4:+55127314 None:intergenic
GGCGACCCCGGGCGGTCGCC+CGG 0.272076 6_4:-55127312 Msa0991270:five_prime_UTR
CCTGACCCTTCTACAAATTC+TGG 0.284801 6_4:+55126090 None:intergenic
TCGAGCCCGGGCGACCGCCC+GGG 0.322736 6_4:+55127306 None:intergenic
CACATTCCAGAATTTGTAGA+AGG 0.327537 6_4:-55126096 Msa0991270:CDS
ATCGAGCCCGGGCGACCGCC+CGG 0.328256 6_4:+55127305 None:intergenic
GGCGACCGCCCGGGGTCGCC+GGG 0.329843 6_4:+55127315 None:intergenic
TACTTTACCTGATTCTGTTC+CGG 0.350730 6_4:-55127131 Msa0991270:five_prime_UTR
GGCCAAATAGTTGCAATGTT+TGG 0.352385 6_4:-55126832 Msa0991270:exon
TTGTTGACCGGAACAGAATC+AGG 0.356106 6_4:+55127124 None:intergenic
GGGCAAATTGGGCAAATCTA+TGG 0.382153 6_4:-55127227 Msa0991270:five_prime_UTR
GCGACCCCGGGCGGTCGCCC+GGG 0.390046 6_4:-55127311 Msa0991270:five_prime_UTR
GAGACAGAGCCCGGCGACCC+CGG 0.397050 6_4:-55127324 Msa0991270:five_prime_UTR
GGTTCTATGTCTAGAAGAAT+TGG 0.399284 6_4:-55127175 Msa0991270:five_prime_UTR
CCAGAATTTGTAGAAGGGTC+AGG 0.415356 6_4:-55126090 Msa0991270:CDS
AGGCCACTAAAATCAGCATC+AGG 0.422575 6_4:+55120666 None:intergenic
AGGCTTGAAGGTGCTAAACT+TGG 0.425824 6_4:-55126070 Msa0991270:CDS
GGCGGTCGCCCGGGCTCGAT+CGG 0.426836 6_4:-55127302 Msa0991270:five_prime_UTR
AGACAGAGCCCGGCGACCCC+GGG 0.435092 6_4:-55127323 Msa0991270:five_prime_UTR
TGTAGAAGGGTCAGGCTTGA+AGG 0.436083 6_4:-55126082 Msa0991270:CDS
TCATACAAAATCGTTAAAGA+TGG 0.448650 6_4:-55120639 Msa0991270:CDS
AGGAACTTACCGATCGAGCC+CGG 0.460044 6_4:+55127293 None:intergenic
CGAGCCCGGGCGACCGCCCG+GGG 0.485962 6_4:+55127307 None:intergenic
GGAAAAGGAACACAAGCAAA+TGG 0.489476 6_4:-55126853 Msa0991270:five_prime_UTR
GCAGTGGCGGAGACAGAGCC+CGG 0.512706 6_4:-55127333 Msa0991270:five_prime_UTR
AGCAGAACCTCTTTGTTGAC+CGG 0.514149 6_4:+55127112 None:intergenic
TTGGGAAGCAACAATATCTC+AGG 0.519836 6_4:-55126051 Msa0991270:intron
GATGAAATGCAAAGGCGCCT+TGG 0.524668 6_4:-55120745 Msa0991270:CDS
AAGAGTGTTGAGCTTGCTCA+CGG 0.536865 6_4:+55120691 None:intergenic
GTTGCAATGTTTGGTACTCA+AGG 0.543169 6_4:-55126823 Msa0991270:exon
CATACAAAATCGTTAAAGAT+GGG 0.547529 6_4:-55120638 Msa0991270:CDS
TTCTGTTCCGGTCAACAAAG+AGG 0.555294 6_4:-55127119 Msa0991270:intron
CAACATTCTCAGAGGTTCGA+AGG 0.558149 6_4:-55127196 Msa0991270:five_prime_UTR
GGCTTGAAGGTGCTAAACTT+GGG 0.561823 6_4:-55126069 Msa0991270:CDS
CAGAGCCCGGCGACCCCGGG+CGG 0.568493 6_4:-55127320 Msa0991270:five_prime_UTR
TTGCAATGTTTGGTACTCAA+GGG 0.577807 6_4:-55126822 Msa0991270:intron
GGAACTTACCGATCGAGCCC+GGG 0.581615 6_4:+55127294 None:intergenic
ACAATTAATTAGGGCAGTGG+CGG 0.601189 6_4:-55127346 None:intergenic
ACATTCCAGAATTTGTAGAA+GGG 0.624926 6_4:-55126095 Msa0991270:CDS
ATCGACAAAATATTCTGCCA+AGG 0.625880 6_4:+55120728 None:intergenic
AGAGTGTTGAGCTTGCTCAC+GGG 0.627194 6_4:+55120692 None:intergenic
GGCCACTAAAATCAGCATCA+GGG 0.645511 6_4:+55120667 None:intergenic
GAGGAAGTGATGAAATGCAA+AGG 0.650862 6_4:-55120753 Msa0991270:CDS
CACTTCAACAACATTCTCAG+AGG 0.654400 6_4:-55127204 Msa0991270:five_prime_UTR
TAAATGGAAGGTGTAATGTG+AGG 0.746738 6_4:+55127273 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCAATTTCTTTTT+TGG - chr6_4:55120868-55120887 Msa0991270:intron 10.0%
!!! TTTTTTTCAATTTCTTTTTT+GGG - chr6_4:55120869-55120888 Msa0991270:intron 10.0%
!! ACTTCAAAAACAAAAAAATT+GGG - chr6_4:55120706-55120725 Msa0991270:CDS 15.0%
!! AAAATAAACAATCATAACTA+AGG + chr6_4:55121269-55121288 None:intergenic 15.0%
!! TGTAATATTAATGATATTGA+TGG - chr6_4:55121301-55121320 Msa0991270:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr6_4:55121604-55121623 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr6_4:55121605-55121624 None:intergenic 15.0%
!! GATAAATCAAAAGTAATTAA+CGG + chr6_4:55121981-55122000 None:intergenic 15.0%
!!! GTTTATAAAAATTGTTTCTT+TGG + chr6_4:55122350-55122369 None:intergenic 15.0%
!!! ACAATTTTTATAAACAGAAA+AGG - chr6_4:55122355-55122374 Msa0991270:intron 15.0%
!! TTTATAATTTCAGATTTGTA+AGG - chr6_4:55122458-55122477 Msa0991270:intron 15.0%
!! CACTTCAAAAACAAAAAAAT+TGG - chr6_4:55120705-55120724 Msa0991270:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr6_4:55121535-55121554 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr6_4:55121645-55121664 None:intergenic 20.0%
!! AAAAGTGGAATATATTGTAT+TGG + chr6_4:55121646-55121665 None:intergenic 20.0%
!! GTATCAAATAATTTCATTTC+AGG - chr6_4:55121833-55121852 Msa0991270:intron 20.0%
!!! TCAAATTTGAAATAGAAACT+GGG + chr6_4:55121934-55121953 None:intergenic 20.0%
!!! ATCAAATTTGAAATAGAAAC+TGG + chr6_4:55121935-55121954 None:intergenic 20.0%
!! GTATAGTAAAATTTCAAATG+CGG + chr6_4:55122084-55122103 None:intergenic 20.0%
!! TACTATACATTTCATAGTAA+TGG - chr6_4:55122096-55122115 Msa0991270:intron 20.0%
!! ACTATACATTTCATAGTAAT+GGG - chr6_4:55122097-55122116 Msa0991270:intron 20.0%
!!! ATGAAAATGGTCTTATAAAA+AGG - chr6_4:55122238-55122257 Msa0991270:intron 20.0%
!!! TGAAAATGGTCTTATAAAAA+GGG - chr6_4:55122239-55122258 Msa0991270:intron 20.0%
!! AACAAAAAAGAAACAAGAAA+AGG - chr6_4:55122396-55122415 Msa0991270:intron 20.0%
!!! AACCAATTTTGATAATTGTA+TGG + chr6_4:55122537-55122556 None:intergenic 20.0%
!!! ACAATTATCAAAATTGGTTT+TGG - chr6_4:55122538-55122557 Msa0991270:intron 20.0%
!!! CAATTATCAAAATTGGTTTT+GGG - chr6_4:55122539-55122558 Msa0991270:intron 20.0%
!!! TTTTTAATCTTTCGATTGAA+GGG - chr6_4:55122723-55122742 Msa0991270:intron 20.0%
!! AAAAATTACAATGAAGAGTA+TGG - chr6_4:55122822-55122841 Msa0991270:intron 20.0%
!!! ACTTATAAATGTGATTTGTT+TGG - chr6_4:55123255-55123274 Msa0991270:intron 20.0%
!!! TTTTAGAAGTTGTTAGTTTT+GGG - chr6_4:55124036-55124055 Msa0991270:intron 20.0%
!!! TTATGTATTTTAACTGATGT+TGG - chr6_4:55124113-55124132 Msa0991270:intron 20.0%
!! TGATATTTATAGCATGTTAT+GGG - chr6_4:55124273-55124292 Msa0991270:intron 20.0%
!! AAATACTTTCCAAAAATACA+TGG + chr6_4:55124581-55124600 None:intergenic 20.0%
!!! TTTTTGGAAAGTATTTTAGA+CGG - chr6_4:55124585-55124604 Msa0991270:intron 20.0%
!!! GTCTTTGCTTTTTAAAATTT+TGG - chr6_4:55124653-55124672 Msa0991270:intron 20.0%
!!! ATTTCTTTTATCATGAGTTA+TGG - chr6_4:55124924-55124943 Msa0991270:intron 20.0%
!!! TTTCTTTTATCATGAGTTAT+GGG - chr6_4:55124925-55124944 Msa0991270:intron 20.0%
!!! TCTCTAAGAAAACTAAAAAA+CGG + chr6_4:55125155-55125174 None:intergenic 20.0%
!!! TTTTTTAGTTTTCTTAGAGA+AGG - chr6_4:55125155-55125174 Msa0991270:intron 20.0%
!!! AAATATTTTTTCCTTTCTGA+AGG + chr6_4:55126462-55126481 None:intergenic 20.0%
!! CTTGAATAAATTCAATGTTA+AGG - chr6_4:55126827-55126846 Msa0991270:exon 20.0%
!!! TTGTTTTTGAAGTGTGTAAA+TGG + chr6_4:55120699-55120718 None:intergenic 25.0%
! AACAAAAAAATTGGGCAAAT+TGG - chr6_4:55120714-55120733 Msa0991270:CDS 25.0%
! ACAAAAAAATTGGGCAAATT+GGG - chr6_4:55120715-55120734 Msa0991270:CDS 25.0%
! ATTTGATAAGTTTCAGAAAG+TGG - chr6_4:55121022-55121041 Msa0991270:intron 25.0%
! TTTGATAAGTTTCAGAAAGT+GGG - chr6_4:55121023-55121042 Msa0991270:intron 25.0%
! GCTTTATATTTACTCTTAAC+AGG - chr6_4:55121397-55121416 Msa0991270:intron 25.0%
! AAACTGAAATATAGAGCTTA+TGG + chr6_4:55121472-55121491 None:intergenic 25.0%
!!! CTCTATATTTCAGTTTTAAC+TGG - chr6_4:55121476-55121495 Msa0991270:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr6_4:55121536-55121555 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr6_4:55121557-55121576 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr6_4:55121558-55121577 None:intergenic 25.0%
! TGTATAAATGAAGTGAAAAG+TGG + chr6_4:55121661-55121680 None:intergenic 25.0%
!!! TTTTTTGGTTCAGTTTTAAC+TGG - chr6_4:55121747-55121766 Msa0991270:intron 25.0%
!!! TTCAGTTTTAACTGGTATTT+TGG - chr6_4:55121755-55121774 Msa0991270:intron 25.0%
!!! AAAAGTAATTAACGGATTGA+AGG + chr6_4:55121973-55121992 None:intergenic 25.0%
! TGCACATAGATATATGAAAA+TGG - chr6_4:55122225-55122244 Msa0991270:intron 25.0%
! GACAATAAATTTGTGCAAAA+GGG - chr6_4:55122261-55122280 Msa0991270:intron 25.0%
! TATGTAAAAGCCATTAATCA+CGG - chr6_4:55122486-55122505 Msa0991270:intron 25.0%
! GTCCATACAATTATCAAAAT+TGG - chr6_4:55122532-55122551 Msa0991270:intron 25.0%
!! CTTTTTAATCTTTCGATTGA+AGG - chr6_4:55122722-55122741 Msa0991270:intron 25.0%
!! CTCTTCATTGTAATTTTTCA+TGG + chr6_4:55122820-55122839 None:intergenic 25.0%
!! AGATAGTTTTCCATATAGTT+GGG + chr6_4:55123338-55123357 None:intergenic 25.0%
! AAAAAATTTCCTTAAAACCC+TGG + chr6_4:55123481-55123500 None:intergenic 25.0%
!!! AGGGTTTTAAGGAAATTTTT+TGG - chr6_4:55123480-55123499 Msa0991270:intron 25.0%
!!! AAGGAAATTTTTTGGTATTC+AGG - chr6_4:55123488-55123507 Msa0991270:intron 25.0%
!!! GTTTTAGAAGTTGTTAGTTT+TGG - chr6_4:55124035-55124054 Msa0991270:intron 25.0%
!! TTAGTTTCATTTTCAAACGT+TGG - chr6_4:55124064-55124083 Msa0991270:intron 25.0%
! GGTACATTTATATTTCATTG+TGG - chr6_4:55124134-55124153 Msa0991270:intron 25.0%
!! CTAGAGTTTATACTGATTAT+TGG - chr6_4:55124226-55124245 Msa0991270:intron 25.0%
! GTGATATTTATAGCATGTTA+TGG - chr6_4:55124272-55124291 Msa0991270:intron 25.0%
!! AGCCTTTAGGAATATTATTA+CGG - chr6_4:55124481-55124500 Msa0991270:intron 25.0%
! AACCGTAATAATATTCCTAA+AGG + chr6_4:55124486-55124505 None:intergenic 25.0%
!!! AGATGTTTTAATAGTCTCTA+AGG - chr6_4:55124794-55124813 Msa0991270:intron 25.0%
!!! GATGTTTTAATAGTCTCTAA+GGG - chr6_4:55124795-55124814 Msa0991270:intron 25.0%
! TATGTATCATCTATTGTTAG+TGG - chr6_4:55124820-55124839 Msa0991270:intron 25.0%
!! TTGTTGTTATGGTTGTAATT+AGG - chr6_4:55125276-55125295 Msa0991270:intron 25.0%
! TGTTGTTATGGTTGTAATTA+GGG - chr6_4:55125277-55125296 Msa0991270:intron 25.0%
! ACAAATTCGTCCAAATAAAT+GGG - chr6_4:55125931-55125950 Msa0991270:intron 25.0%
!!! GGTCCTTTTCTTTATTTTTA+CGG - chr6_4:55126010-55126029 Msa0991270:intron 25.0%
! AAAGATGTGAATTCGAATAA+GGG - chr6_4:55126037-55126056 Msa0991270:intron 25.0%
!! TTCTTAAAGTTAGAAGTGTA+GGG + chr6_4:55126109-55126128 None:intergenic 25.0%
!! TTTCTTAAAGTTAGAAGTGT+AGG + chr6_4:55126110-55126129 None:intergenic 25.0%
! AGGTTATGTATTTAAGAAGA+TGG - chr6_4:55126249-55126268 Msa0991270:intron 25.0%
!! TTGTTATGTGTTTTCTTTGT+AGG - chr6_4:55126417-55126436 Msa0991270:intron 25.0%
!! AAAATATTTTGCTAAGCTGA+AGG - chr6_4:55126473-55126492 Msa0991270:intron 25.0%
! ATTGGAAGAAAGGTAAAAAT+GGG - chr6_4:55126657-55126676 Msa0991270:intron 25.0%
!!! ATAAGGACATTGATTTCTAA+AGG - chr6_4:55126786-55126805 Msa0991270:intron 25.0%
! TCATACAAAATCGTTAAAGA+TGG - chr6_4:55127314-55127333 Msa0991270:five_prime_UTR 25.0%
! CATACAAAATCGTTAAAGAT+GGG - chr6_4:55127315-55127334 Msa0991270:five_prime_UTR 25.0%
!!! TTTTGAAGTGTGTAAATGGA+AGG + chr6_4:55120695-55120714 None:intergenic 30.0%
ATTTGATCAGTTTCAGAAAG+TGG - chr6_4:55120940-55120959 Msa0991270:intron 30.0%
TTTGATCAGTTTCAGAAAGT+GGG - chr6_4:55120941-55120960 Msa0991270:intron 30.0%
TACCAAACATTGCAACTATT+TGG + chr6_4:55121126-55121145 None:intergenic 30.0%
AACAATCATAACTAAGGTCA+AGG + chr6_4:55121263-55121282 None:intergenic 30.0%
ACATTCCAGAATTTGTAGAA+GGG - chr6_4:55121858-55121877 Msa0991270:intron 30.0%
! TTTGAAATAGAAACTGGGAT+TGG + chr6_4:55121929-55121948 None:intergenic 30.0%
CAAATTTGATTGAACTTGAG+AGG - chr6_4:55121945-55121964 Msa0991270:intron 30.0%
! CATGATGAATTTAGCCTTTA+AGG - chr6_4:55122000-55122019 Msa0991270:intron 30.0%
ATATATGCAAATGCGGAAAT+TGG + chr6_4:55122133-55122152 None:intergenic 30.0%
GCGAAAAATATATGCAAATG+CGG + chr6_4:55122140-55122159 None:intergenic 30.0%
GGACAATAAATTTGTGCAAA+AGG - chr6_4:55122260-55122279 Msa0991270:intron 30.0%
! TTTGATAATTGTATGGACGT+CGG + chr6_4:55122530-55122549 None:intergenic 30.0%
! AATTACAATGAAGAGTATGG+TGG - chr6_4:55122825-55122844 Msa0991270:intron 30.0%
TGGTGGTTACATTAGTTATA+AGG - chr6_4:55122842-55122861 Msa0991270:intron 30.0%
! TTTGGTGATAAAAGCAACAA+AGG - chr6_4:55123008-55123027 Msa0991270:intron 30.0%
ACTATAAAGCCTAGGAAAAT+GGG + chr6_4:55123303-55123322 None:intergenic 30.0%
! TTTTCCATATAGTTGGGATT+TGG + chr6_4:55123332-55123351 None:intergenic 30.0%
! CAGATAGTTTTCCATATAGT+TGG + chr6_4:55123339-55123358 None:intergenic 30.0%
TATGGAAAACTATCTGATTG+CGG - chr6_4:55123343-55123362 Msa0991270:intron 30.0%
!! AGTTTGATGATGTTACCTAT+AGG - chr6_4:55123432-55123451 Msa0991270:intron 30.0%
!!! AAATTTTTTGGTATTCAGGC+TGG - chr6_4:55123492-55123511 Msa0991270:intron 30.0%
!!! AATTTTTTGGTATTCAGGCT+GGG - chr6_4:55123493-55123512 Msa0991270:intron 30.0%
TCTATATACTATGGTACACT+AGG - chr6_4:55123729-55123748 Msa0991270:intron 30.0%
CTATATACTATGGTACACTA+GGG - chr6_4:55123730-55123749 Msa0991270:intron 30.0%
! ATTGTGGTAATTTTCTATCG+TGG - chr6_4:55124150-55124169 Msa0991270:intron 30.0%
! ACTTGCAAAAAAGTACGATA+AGG - chr6_4:55124179-55124198 Msa0991270:intron 30.0%
! CTTGCAAAAAAGTACGATAA+GGG - chr6_4:55124180-55124199 Msa0991270:intron 30.0%
! AGGTTTCTAGAAGCTAATAA+AGG - chr6_4:55124360-55124379 Msa0991270:intron 30.0%
! TTTCTAGAAGCTAATAAAGG+CGG - chr6_4:55124363-55124382 Msa0991270:intron 30.0%
AAGTGATGATAATATGGGAT+AGG - chr6_4:55124540-55124559 Msa0991270:intron 30.0%
! TGCCAGATACTATTTTCTTT+CGG - chr6_4:55124679-55124698 Msa0991270:intron 30.0%
! CAAGGCTAGATGATTTTTAA+AGG - chr6_4:55124875-55124894 Msa0991270:intron 30.0%
!!! ATGATTTTTAAAGGCGTTCA+TGG - chr6_4:55124884-55124903 Msa0991270:intron 30.0%
GTAGTTCAAAAAGATCTGAA+CGG - chr6_4:55124960-55124979 Msa0991270:intron 30.0%
!!! TTTTCCTAGCTTTGTTGTTA+TGG - chr6_4:55125265-55125284 Msa0991270:intron 30.0%
AGATTGGGAAGTTTATCATT+TGG - chr6_4:55125403-55125422 Msa0991270:intron 30.0%
CACTACTATTATCACTAGAA+AGG + chr6_4:55125490-55125509 None:intergenic 30.0%
! CTTTCTAGTGATAATAGTAG+TGG - chr6_4:55125488-55125507 Msa0991270:intron 30.0%
! TGTTTCTATATGCCAAATCA+GGG - chr6_4:55125528-55125547 Msa0991270:intron 30.0%
!! AGAAATGGATTCTTTTGATG+AGG - chr6_4:55125649-55125668 Msa0991270:intron 30.0%
TTTCAAAACATCCACTTCAA+AGG + chr6_4:55125891-55125910 None:intergenic 30.0%
!!! TGTTTTGAAAAACCTGAATG+TGG - chr6_4:55125901-55125920 Msa0991270:intron 30.0%
CACAAATTCGTCCAAATAAA+TGG - chr6_4:55125930-55125949 Msa0991270:intron 30.0%
GTGCCGTAAAAATAAAGAAA+AGG + chr6_4:55126016-55126035 None:intergenic 30.0%
CTTATTCGAATTCACATCTT+TGG + chr6_4:55126038-55126057 None:intergenic 30.0%
CAAAGATGTGAATTCGAATA+AGG - chr6_4:55126036-55126055 Msa0991270:intron 30.0%
! CTTCTAACTTTAAGAAAGAC+TGG - chr6_4:55126113-55126132 Msa0991270:intron 30.0%
GAAGAAAGATATTCCTTCAA+AGG - chr6_4:55126560-55126579 Msa0991270:intron 30.0%
GATTGGAAGAAAGGTAAAAA+TGG - chr6_4:55126656-55126675 Msa0991270:intron 30.0%
ATCTATCTCTTTGAACGAAA+AGG - chr6_4:55126745-55126764 Msa0991270:intron 30.0%
TCCAAATTCTACAAGTACAT+GGG + chr6_4:55126872-55126891 None:intergenic 30.0%
TTCCAAATTCTACAAGTACA+TGG + chr6_4:55126873-55126892 None:intergenic 30.0%
!!! AGTTTGTTGAAATTTTGTCG+TGG - chr6_4:55126899-55126918 Msa0991270:intron 30.0%
! TAAATGGAAGGTGTAATGTG+AGG + chr6_4:55120683-55120702 None:intergenic 35.0%
GGTTCTATGTCTAGAAGAAT+TGG - chr6_4:55120778-55120797 Msa0991270:intron 35.0%
TACTTTACCTGATTCTGTTC+CGG - chr6_4:55120822-55120841 Msa0991270:intron 35.0%
!!! TTTTGGGTTTGCATGCTTTT+TGG - chr6_4:55120885-55120904 Msa0991270:intron 35.0%
AATCTCATTCTTAAACACGC+AGG - chr6_4:55121079-55121098 Msa0991270:intron 35.0%
ATTCTTAAACACGCAGGAAA+AGG - chr6_4:55121085-55121104 Msa0991270:intron 35.0%
TTGCAATGTTTGGTACTCAA+GGG - chr6_4:55121131-55121150 Msa0991270:intron 35.0%
CTGAAATATAGAGCTTATGG+AGG + chr6_4:55121469-55121488 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr6_4:55121522-55121541 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr6_4:55121691-55121710 Msa0991270:intron 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr6_4:55121704-55121723 Msa0991270:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr6_4:55121705-55121724 Msa0991270:intron 35.0%
!!! AGGGAGTAAGCTCTATTTTT+TGG - chr6_4:55121732-55121751 Msa0991270:intron 35.0%
! CAGTTTTTACCACTCTTTAG+AGG - chr6_4:55121802-55121821 Msa0991270:intron 35.0%
! CATCAATTACCTCTAAAGAG+TGG + chr6_4:55121814-55121833 None:intergenic 35.0%
CACATTCCAGAATTTGTAGA+AGG - chr6_4:55121857-55121876 Msa0991270:intron 35.0%
! TTTAGCCTTTAAGGATTCAC+AGG - chr6_4:55122009-55122028 Msa0991270:intron 35.0%
! TTAGCCTTTAAGGATTCACA+GGG - chr6_4:55122010-55122029 Msa0991270:intron 35.0%
! TTTGCATATATTTTTCGCCC+AGG - chr6_4:55122142-55122161 Msa0991270:intron 35.0%
! TGCAAAAGGGTCTTGTAAAT+AGG - chr6_4:55122274-55122293 Msa0991270:intron 35.0%
AATCTTAGCTCCGTGATTAA+TGG + chr6_4:55122499-55122518 None:intergenic 35.0%
!! GCTACATGATTTGGTTTACA+CGG - chr6_4:55122580-55122599 Msa0991270:intron 35.0%
!! CTACATGATTTGGTTTACAC+GGG - chr6_4:55122581-55122600 Msa0991270:intron 35.0%
AAAGTCATCAGCAAAGTATG+AGG + chr6_4:55122620-55122639 None:intergenic 35.0%
TGATGACTTTATGCTAGATG+TGG - chr6_4:55122630-55122649 Msa0991270:intron 35.0%
! CATGTGAAAACTATTGGTCT+CGG + chr6_4:55122660-55122679 None:intergenic 35.0%
! AATAGTTTTCACATGCCCTT+GGG - chr6_4:55122665-55122684 Msa0991270:intron 35.0%
TGCGACATAATCCAAAGTAA+CGG + chr6_4:55122699-55122718 None:intergenic 35.0%
!! CATTAGTTATAAGGTGCTGA+TGG - chr6_4:55122851-55122870 Msa0991270:intron 35.0%
!! TGATTTGTTTGGTTTGTGCA+GGG - chr6_4:55123266-55123285 Msa0991270:intron 35.0%
CACTATAAAGCCTAGGAAAA+TGG + chr6_4:55123304-55123323 None:intergenic 35.0%
TGATCCAAATCCCAACTATA+TGG - chr6_4:55123325-55123344 Msa0991270:intron 35.0%
GCGAAATGGATGTTACAAAA+GGG - chr6_4:55123365-55123384 Msa0991270:intron 35.0%
TGGAGGATGTCTATATACTA+TGG - chr6_4:55123720-55123739 Msa0991270:intron 35.0%
! TGGTGACTTTTGTTCGTATT+TGG - chr6_4:55124084-55124103 Msa0991270:intron 35.0%
AAAGTACGATAAGGGATACT+AGG - chr6_4:55124188-55124207 Msa0991270:intron 35.0%
AAGTACGATAAGGGATACTA+GGG - chr6_4:55124189-55124208 Msa0991270:intron 35.0%
TTTATAGCATGTTATGGGCT+TGG - chr6_4:55124278-55124297 Msa0991270:intron 35.0%
TTATAGCATGTTATGGGCTT+GGG - chr6_4:55124279-55124298 Msa0991270:intron 35.0%
! GGGTATTTGTGTATTTTACG+CGG - chr6_4:55124330-55124349 Msa0991270:intron 35.0%
! TAGAGGTCTTTTAAGCCTTT+AGG - chr6_4:55124468-55124487 Msa0991270:intron 35.0%
AAGGCGAAGTGATGATAATA+TGG - chr6_4:55124534-55124553 Msa0991270:intron 35.0%
AGGCGAAGTGATGATAATAT+GGG - chr6_4:55124535-55124554 Msa0991270:intron 35.0%
CTCCGAAAGAAAATAGTATC+TGG + chr6_4:55124684-55124703 None:intergenic 35.0%
! CAGATACTATTTTCTTTCGG+AGG - chr6_4:55124682-55124701 Msa0991270:intron 35.0%
GTTTATGTGCGCTTTATGTT+TGG - chr6_4:55124748-55124767 Msa0991270:intron 35.0%
CGAGAAAAATGAGAGAAATG+AGG + chr6_4:55125122-55125141 None:intergenic 35.0%
TGCTTGTTTCGAACTTTATC+AGG - chr6_4:55125216-55125235 Msa0991270:intron 35.0%
ACAACCATAACAACAAAGCT+AGG + chr6_4:55125272-55125291 None:intergenic 35.0%
GTTGTAATTAGGGATTGTGA+CGG - chr6_4:55125287-55125306 Msa0991270:intron 35.0%
!! AGTCTAACGGTGTTATAGAT+TGG - chr6_4:55125387-55125406 Msa0991270:intron 35.0%
!! GTCTAACGGTGTTATAGATT+GGG - chr6_4:55125388-55125407 Msa0991270:intron 35.0%
! GACATTTTCGAATCATCTCT+AGG + chr6_4:55125449-55125468 None:intergenic 35.0%
AAAATGTCAACCGATCTGTT+TGG - chr6_4:55125461-55125480 Msa0991270:intron 35.0%
! GTGTTTCTATATGCCAAATC+AGG - chr6_4:55125527-55125546 Msa0991270:intron 35.0%
! GTGAGAAGGGTAACTTTTTA+CGG - chr6_4:55125612-55125631 Msa0991270:intron 35.0%
TAGTGTCAATTCTATGCATG+TGG - chr6_4:55125679-55125698 Msa0991270:intron 35.0%
CAAAGTGTATTACATGTACG+CGG - chr6_4:55125826-55125845 Msa0991270:intron 35.0%
TTATTTGGACGAATTTGTGC+AGG + chr6_4:55125929-55125948 None:intergenic 35.0%
CAGATGAACACCCATTTATT+TGG + chr6_4:55125944-55125963 None:intergenic 35.0%
AATAAATGGGTGTTCATCTG+TGG - chr6_4:55125944-55125963 Msa0991270:intron 35.0%
!!! TGGTTTTGAGATTCTCTGTA+AGG - chr6_4:55125964-55125983 Msa0991270:intron 35.0%
TAAAGAAAAGGACCAAGAGA+GGG + chr6_4:55126004-55126023 None:intergenic 35.0%
ATAAAGAAAAGGACCAAGAG+AGG + chr6_4:55126005-55126024 None:intergenic 35.0%
! TTAAAGTTAGAAGTGTAGGG+CGG + chr6_4:55126106-55126125 None:intergenic 35.0%
! CTAACTTTAAGAAAGACTGG+AGG - chr6_4:55126116-55126135 Msa0991270:intron 35.0%
GAATACCTTCGTTAAGGTAA+GGG - chr6_4:55126138-55126157 Msa0991270:intron 35.0%
AATACCTTCGTTAAGGTAAG+GGG - chr6_4:55126139-55126158 Msa0991270:intron 35.0%
GTCCAACTCATTGGAAATTT+CGG + chr6_4:55126208-55126227 None:intergenic 35.0%
ATTTAAGAAGATGGAACCCT+AGG - chr6_4:55126258-55126277 Msa0991270:intron 35.0%
TCCCATGTACTTGTAGAATT+TGG - chr6_4:55126868-55126887 Msa0991270:intron 35.0%
! TGAAATTTTGTCGTGGTTAC+AGG - chr6_4:55126906-55126925 Msa0991270:intron 35.0%
AATACTGAAAAGGCTTGTGA+TGG - chr6_4:55127076-55127095 Msa0991270:intron 35.0%
ATCGACAAAATATTCTGCCA+AGG + chr6_4:55127228-55127247 None:intergenic 35.0%
! TTGGCAGAATATTTTGTCGA+TGG - chr6_4:55127227-55127246 Msa0991270:five_prime_UTR 35.0%
! TGGCAGAATATTTTGTCGAT+GGG - chr6_4:55127228-55127247 Msa0991270:five_prime_UTR 35.0%
! TAACGATTTTGTATGAGTCG+AGG + chr6_4:55127310-55127329 None:intergenic 35.0%
CACTTCAACAACATTCTCAG+AGG - chr6_4:55120749-55120768 Msa0991270:CDS 40.0%
GGAAAAGGAACACAAGCAAA+TGG - chr6_4:55121100-55121119 Msa0991270:intron 40.0%
GGCCAAATAGTTGCAATGTT+TGG - chr6_4:55121121-55121140 Msa0991270:intron 40.0%
GTTGCAATGTTTGGTACTCA+AGG - chr6_4:55121130-55121149 Msa0991270:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr6_4:55121521-55121540 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr6_4:55121707-55121726 None:intergenic 40.0%
!!! GTATTTTGGCTCTGATTTGC+TGG - chr6_4:55121769-55121788 Msa0991270:intron 40.0%
TTGGGAAGCAACAATATCTC+AGG - chr6_4:55121902-55121921 Msa0991270:intron 40.0%
!! CAAAAGTACCCCTAATTCAG+TGG + chr6_4:55122190-55122209 None:intergenic 40.0%
! CAAGGGCATGTGAAAACTAT+TGG + chr6_4:55122666-55122685 None:intergenic 40.0%
! CAATAGTTTTCACATGCCCT+TGG - chr6_4:55122664-55122683 Msa0991270:intron 40.0%
! ATAGTTTTCACATGCCCTTG+GGG - chr6_4:55122666-55122685 Msa0991270:intron 40.0%
! GTGCTGATGGAGTATTATGA+GGG - chr6_4:55122864-55122883 Msa0991270:intron 40.0%
! ATTTTGTGGATCCGACAATC+TGG + chr6_4:55122907-55122926 None:intergenic 40.0%
! TATTGATCCCCTGGATTTTG+TGG + chr6_4:55122921-55122940 None:intergenic 40.0%
ACAAAATCCAGGGGATCAAT+AGG - chr6_4:55122920-55122939 Msa0991270:intron 40.0%
! GAAGTGTTACCTCCTATACT+TGG - chr6_4:55122971-55122990 Msa0991270:intron 40.0%
TGTTACCTCCTATACTTGGT+TGG - chr6_4:55122975-55122994 Msa0991270:intron 40.0%
ACAAGCATCCAACCAAGTAT+AGG + chr6_4:55122986-55123005 None:intergenic 40.0%
!! TTGGTTGGATGCTTGTTGTT+TGG - chr6_4:55122990-55123009 Msa0991270:intron 40.0%
GGGGATGCGTAATTATTCTT+GGG - chr6_4:55123073-55123092 Msa0991270:intron 40.0%
GGGATGCGTAATTATTCTTG+GGG - chr6_4:55123074-55123093 Msa0991270:intron 40.0%
ATGCGTAATTATTCTTGGGG+AGG - chr6_4:55123077-55123096 Msa0991270:intron 40.0%
TGCGTAATTATTCTTGGGGA+GGG - chr6_4:55123078-55123097 Msa0991270:intron 40.0%
! CTATCTGAGGTCTCTTTGTT+TGG - chr6_4:55123128-55123147 Msa0991270:intron 40.0%
!! GTGATTTGTTTGGTTTGTGC+AGG - chr6_4:55123265-55123284 Msa0991270:intron 40.0%
GGCGAAATGGATGTTACAAA+AGG - chr6_4:55123364-55123383 Msa0991270:intron 40.0%
TGGATGTTACAAAAGGGTCA+CGG - chr6_4:55123371-55123390 Msa0991270:intron 40.0%
ATGCTCTTTGTACGACCTAT+AGG + chr6_4:55123450-55123469 None:intergenic 40.0%
! TAGGTCGTACAAAGAGCATA+AGG - chr6_4:55123451-55123470 Msa0991270:intron 40.0%
! AAAGAGCATAAGGAGATCCA+GGG - chr6_4:55123461-55123480 Msa0991270:intron 40.0%
! TAAGGAGATCCAGGGTTTTA+AGG - chr6_4:55123469-55123488 Msa0991270:intron 40.0%
! GGGTTATGTGCAGTGTTTTT+CGG - chr6_4:55123513-55123532 Msa0991270:intron 40.0%
! GGTTATGTGCAGTGTTTTTC+GGG - chr6_4:55123514-55123533 Msa0991270:intron 40.0%
CCTGATGTCTAAAAACGTTC+TGG + chr6_4:55123586-55123605 None:intergenic 40.0%
!! CCAGAACGTTTTTAGACATC+AGG - chr6_4:55123583-55123602 Msa0991270:intron 40.0%
!! GAACGTTTTTAGACATCAGG+TGG - chr6_4:55123586-55123605 Msa0991270:intron 40.0%
ACGATCAGATCAGATTGTGT+AGG - chr6_4:55123622-55123641 Msa0991270:intron 40.0%
ATGATCTTCTCCTCATTAGC+TGG + chr6_4:55123787-55123806 None:intergenic 40.0%
AGAAGATCATTGCACAACAG+TGG - chr6_4:55123797-55123816 Msa0991270:intron 40.0%
GAAGATCATTGCACAACAGT+GGG - chr6_4:55123798-55123817 Msa0991270:intron 40.0%
GTTACCATGTCATAGGTATC+AGG + chr6_4:55123847-55123866 None:intergenic 40.0%
AACGCTAGTTACCATGTCAT+AGG + chr6_4:55123854-55123873 None:intergenic 40.0%
ACACAAATACCCCTATTGCT+TGG + chr6_4:55124322-55124341 None:intergenic 40.0%
!! GTATTTTACGCGGTTTCTAG+AGG - chr6_4:55124340-55124359 Msa0991270:intron 40.0%
! GGCTTAAAAGACCTCTAGAA+AGG + chr6_4:55124465-55124484 None:intergenic 40.0%
ATAAAGCGCACATAAACCCT+CGG + chr6_4:55124745-55124764 None:intergenic 40.0%
TTACACGTGTCTCTGTTCAT+TGG - chr6_4:55125037-55125056 Msa0991270:intron 40.0%
AACTGAGACAGGATTGTCTT+AGG - chr6_4:55125354-55125373 Msa0991270:intron 40.0%
ATCATCTCTAGGCAAATCGT+TGG + chr6_4:55125438-55125457 None:intergenic 40.0%
AGAAAGGTCACCAAACAGAT+CGG + chr6_4:55125474-55125493 None:intergenic 40.0%
!! GTTTGCTGTTGACTCAGAAA+TGG - chr6_4:55125634-55125653 Msa0991270:intron 40.0%
TATGCATGTGGAAGAAAGCT+CGG - chr6_4:55125691-55125710 Msa0991270:intron 40.0%
GAGTGGGATATTTCATCTAC+TGG - chr6_4:55125731-55125750 Msa0991270:intron 40.0%
TTCATCTACTGGTCATGAAG+AGG - chr6_4:55125742-55125761 Msa0991270:intron 40.0%
! TGAATTCGAATAAGGGTACG+TGG - chr6_4:55126044-55126063 Msa0991270:intron 40.0%
GGAATACCTTCGTTAAGGTA+AGG - chr6_4:55126137-55126156 Msa0991270:intron 40.0%
AGCCGAAATTTCCAATGAGT+TGG - chr6_4:55126203-55126222 Msa0991270:intron 40.0%
TACATAACCTATCACAGCAG+CGG + chr6_4:55126239-55126258 None:intergenic 40.0%
ATGTCAGCATACATCACCTA+GGG + chr6_4:55126277-55126296 None:intergenic 40.0%
AATGTCAGCATACATCACCT+AGG + chr6_4:55126278-55126297 None:intergenic 40.0%
ATTTGCATGAGTGCCTGAAT+TGG - chr6_4:55126344-55126363 Msa0991270:intron 40.0%
! GAAGGAGTTTGAGGTATCAT+CGG + chr6_4:55126444-55126463 None:intergenic 40.0%
TACCTCAAACTCCTTCAGAA+AGG - chr6_4:55126448-55126467 Msa0991270:intron 40.0%
! TTCCTTTCTGAAGGAGTTTG+AGG + chr6_4:55126453-55126472 None:intergenic 40.0%
CTTTCTTCTTTGTCCTTCGA+TGG + chr6_4:55126548-55126567 None:intergenic 40.0%
! TGGTATCGAGATTGGAAGAA+AGG - chr6_4:55126647-55126666 Msa0991270:intron 40.0%
CTCTTTGAACGAAAAGGTGA+CGG - chr6_4:55126751-55126770 Msa0991270:intron 40.0%
!! AAAAGGTGACGGAATCATTC+TGG - chr6_4:55126762-55126781 Msa0991270:intron 40.0%
TTGTCGTGGTTACAGGTATA+TGG - chr6_4:55126913-55126932 Msa0991270:intron 40.0%
TCCACATCAACATCTACTAG+GGG + chr6_4:55126950-55126969 None:intergenic 40.0%
GTCCACATCAACATCTACTA+GGG + chr6_4:55126951-55126970 None:intergenic 40.0%
!! CAAGTATGACGATTTGGTGA+AGG - chr6_4:55126985-55127004 Msa0991270:intron 40.0%
GTTCATTAAGAGGATCCTCA+AGG + chr6_4:55127026-55127045 None:intergenic 40.0%
CCATGACATGGTTCATTAAG+AGG + chr6_4:55127036-55127055 None:intergenic 40.0%
CCTCTTAATGAACCATGTCA+TGG - chr6_4:55127033-55127052 Msa0991270:intron 40.0%
TAATGAACCATGTCATGGAG+AGG - chr6_4:55127038-55127057 Msa0991270:intron 40.0%
AGTGACCTCGAATACTGAAA+AGG - chr6_4:55127066-55127085 Msa0991270:intron 40.0%
! ACAAGCCTTTTCAGTATTCG+AGG + chr6_4:55127074-55127093 None:intergenic 40.0%
!!! CTGAGCGCTTTTTTCCTTAA+AGG + chr6_4:55127174-55127193 None:intergenic 40.0%
GAGGAAGTGATGAAATGCAA+AGG - chr6_4:55127200-55127219 Msa0991270:five_prime_UTR 40.0%
!!! TACCCTGATGCTGATTTTAG+TGG - chr6_4:55127284-55127303 Msa0991270:five_prime_UTR 40.0%
GGGCAAATTGGGCAAATCTA+TGG - chr6_4:55120726-55120745 Msa0991270:CDS 45.0%
CAACATTCTCAGAGGTTCGA+AGG - chr6_4:55120757-55120776 Msa0991270:CDS 45.0%
TTGTTGACCGGAACAGAATC+AGG + chr6_4:55120832-55120851 None:intergenic 45.0%
TTCTGTTCCGGTCAACAAAG+AGG - chr6_4:55120834-55120853 Msa0991270:intron 45.0%
AGCAGAACCTCTTTGTTGAC+CGG + chr6_4:55120844-55120863 None:intergenic 45.0%
!! GTTTCAGAAAGTGGGTTGTC+AGG - chr6_4:55120949-55120968 Msa0991270:intron 45.0%
!! AAAGTGGGTTGTCAGGATTG+TGG - chr6_4:55120956-55120975 Msa0991270:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr6_4:55121709-55121728 Msa0991270:intron 45.0%
CCTGACCCTTCTACAAATTC+TGG + chr6_4:55121866-55121885 None:intergenic 45.0%
CCAGAATTTGTAGAAGGGTC+AGG - chr6_4:55121863-55121882 Msa0991270:intron 45.0%
!! AGGCTTGAAGGTGCTAAACT+TGG - chr6_4:55121883-55121902 Msa0991270:intron 45.0%
!! GGCTTGAAGGTGCTAAACTT+GGG - chr6_4:55121884-55121903 Msa0991270:intron 45.0%
TGCTCCCTGTGAATCCTTAA+AGG + chr6_4:55122017-55122036 None:intergenic 45.0%
AGAGACAGCAGTTCTCTTGA+CGG - chr6_4:55122036-55122055 Msa0991270:intron 45.0%
TGCAAATGCGGAAATTGGTG+CGG + chr6_4:55122128-55122147 None:intergenic 45.0%
CCAGGAATTTCATAGAGCCT+GGG + chr6_4:55122162-55122181 None:intergenic 45.0%
AAGTACCCCTAATTCAGTGG+CGG + chr6_4:55122187-55122206 None:intergenic 45.0%
!!! ATTGGTTTTGGGATCCGCTT+TGG - chr6_4:55122550-55122569 Msa0991270:intron 45.0%
!!! TTGGTTTTGGGATCCGCTTT+GGG - chr6_4:55122551-55122570 Msa0991270:intron 45.0%
! TAGTTTTCACATGCCCTTGG+GGG - chr6_4:55122667-55122686 Msa0991270:intron 45.0%
GCCATCCAAAGAAGATGTCT+CGG - chr6_4:55122756-55122775 Msa0991270:intron 45.0%
TCCGAGACATCTTCTTTGGA+TGG + chr6_4:55122760-55122779 None:intergenic 45.0%
TCAGTCCGAGACATCTTCTT+TGG + chr6_4:55122764-55122783 None:intergenic 45.0%
AAGAAGATGTCTCGGACTGA+TGG - chr6_4:55122764-55122783 Msa0991270:intron 45.0%
GGACTGATGGAGAGACATTT+AGG - chr6_4:55122777-55122796 Msa0991270:intron 45.0%
AGAGACATTTAGGAGTGACG+CGG - chr6_4:55122787-55122806 Msa0991270:intron 45.0%
!! GGTGCTGATGGAGTATTATG+AGG - chr6_4:55122863-55122882 Msa0991270:intron 45.0%
ACAATCTGGTAGCAGCATCA+AGG + chr6_4:55122893-55122912 None:intergenic 45.0%
TGATGCTGCTACCAGATTGT+CGG - chr6_4:55122893-55122912 Msa0991270:intron 45.0%
TTGTCGGATCCACAAAATCC+AGG - chr6_4:55122909-55122928 Msa0991270:intron 45.0%
TGTCGGATCCACAAAATCCA+GGG - chr6_4:55122910-55122929 Msa0991270:intron 45.0%
AGCATCCAACCAAGTATAGG+AGG + chr6_4:55122983-55123002 None:intergenic 45.0%
!! AAGCAACAAAGGCATCGAGT+TGG - chr6_4:55123019-55123038 Msa0991270:intron 45.0%
CGGGGATGCGTAATTATTCT+TGG - chr6_4:55123072-55123091 Msa0991270:intron 45.0%
CCTCAGATAGACAGTGGTAT+AGG + chr6_4:55123118-55123137 None:intergenic 45.0%
CCTATACCACTGTCTATCTG+AGG - chr6_4:55123115-55123134 Msa0991270:intron 45.0%
AAGAGACCTCAGATAGACAG+TGG + chr6_4:55123124-55123143 None:intergenic 45.0%
! TCTGAGGTCTCTTTGTTTGG+AGG - chr6_4:55123131-55123150 Msa0991270:intron 45.0%
!! TTGTTTGGTTTGTGCAGGGT+TGG - chr6_4:55123270-55123289 Msa0991270:intron 45.0%
!!! GTTTGTGCAGGGTTGGTTTT+TGG - chr6_4:55123277-55123296 Msa0991270:intron 45.0%
!!! GGTTTTTGGCCCATTTTCCT+AGG - chr6_4:55123291-55123310 Msa0991270:intron 45.0%
GGATCAGCACTATAAAGCCT+AGG + chr6_4:55123311-55123330 None:intergenic 45.0%
ACTATCTGATTGCGGCGAAA+TGG - chr6_4:55123351-55123370 Msa0991270:intron 45.0%
GTTACAAAAGGGTCACGGAA+AGG - chr6_4:55123376-55123395 Msa0991270:intron 45.0%
! CAAAGAGCATAAGGAGATCC+AGG - chr6_4:55123460-55123479 Msa0991270:intron 45.0%
CTTCCGTACTCACACGATTA+AGG - chr6_4:55123655-55123674 Msa0991270:intron 45.0%
GCTCCTTAATCGTGTGAGTA+CGG + chr6_4:55123661-55123680 None:intergenic 45.0%
! AGGATAGGAGACATGATGGA+TGG - chr6_4:55123700-55123719 Msa0991270:intron 45.0%
!! ATAGGAGACATGATGGATGG+AGG - chr6_4:55123703-55123722 Msa0991270:intron 45.0%
TGCCTATGCTGATGAACAGT+TGG - chr6_4:55123876-55123895 Msa0991270:intron 45.0%
GCCTATGCTGATGAACAGTT+GGG - chr6_4:55123877-55123896 Msa0991270:intron 45.0%
ACCCAACTGTTCATCAGCAT+AGG + chr6_4:55123881-55123900 None:intergenic 45.0%
ATGCTTTGTGAATGCTCTCG+AGG - chr6_4:55124249-55124268 Msa0991270:intron 45.0%
TGCTTTGTGAATGCTCTCGA+GGG - chr6_4:55124250-55124269 Msa0991270:intron 45.0%
CATGTTATGGGCTTGGGTTT+CGG - chr6_4:55124285-55124304 Msa0991270:intron 45.0%
!! TTGCTTGGTGTCCAAGCAAT+AGG - chr6_4:55124308-55124327 Msa0991270:intron 45.0%
!! TGCTTGGTGTCCAAGCAATA+GGG - chr6_4:55124309-55124328 Msa0991270:intron 45.0%
! GGCGCATGATCCATTTTAGA+GGG - chr6_4:55124430-55124449 Msa0991270:intron 45.0%
! GCTCTCTAAGCCCTCTAAAA+TGG + chr6_4:55124443-55124462 None:intergenic 45.0%
TAATATGGGATAGGCCCTTC+TGG - chr6_4:55124549-55124568 Msa0991270:intron 45.0%
!!! TGGAGGGCACCATGTATTTT+TGG - chr6_4:55124569-55124588 Msa0991270:intron 45.0%
!! GAACACTTTAGGATCACCCT+AGG + chr6_4:55124713-55124732 None:intergenic 45.0%
! AGGGTGATCCTAAAGTGTTC+TGG - chr6_4:55124713-55124732 Msa0991270:intron 45.0%
TAAAGCGCACATAAACCCTC+GGG + chr6_4:55124744-55124763 None:intergenic 45.0%
! GTTCATGGCGCACTAAGTTT+TGG - chr6_4:55124899-55124918 Msa0991270:intron 45.0%
! AGAGGACTGCATGTTTTTCG+AGG - chr6_4:55125060-55125079 Msa0991270:intron 45.0%
TGTGCTTGTTCGTCTGCTTT+GGG - chr6_4:55125178-55125197 Msa0991270:intron 45.0%
AATTAGGGATTGTGACGGTG+AGG - chr6_4:55125292-55125311 Msa0991270:intron 45.0%
ATTAGGGATTGTGACGGTGA+GGG - chr6_4:55125293-55125312 Msa0991270:intron 45.0%
TGAGAGGAATCAACTGAGAC+AGG - chr6_4:55125343-55125362 Msa0991270:intron 45.0%
AGGCATGCAACACAGTCTAA+CGG - chr6_4:55125374-55125393 Msa0991270:intron 45.0%
AAATCAGGGACAGATCTCGA+GGG - chr6_4:55125542-55125561 Msa0991270:intron 45.0%
TTACCCTTCTCACTTTCCAG+CGG + chr6_4:55125605-55125624 None:intergenic 45.0%
! AAGAAAGCTCGGTGGATTTC+TGG - chr6_4:55125702-55125721 Msa0991270:intron 45.0%
TACTGGTCATGAAGAGGATG+TGG - chr6_4:55125748-55125767 Msa0991270:intron 45.0%
! GTGCTATTGTGCTGTGATGA+GGG - chr6_4:55125770-55125789 Msa0991270:intron 45.0%
AGTGTATTACATGTACGCGG+CGG - chr6_4:55125829-55125848 Msa0991270:intron 45.0%
!! CCACTTCAAAGGCGTTCAAA+GGG + chr6_4:55125880-55125899 None:intergenic 45.0%
!! TCCACTTCAAAGGCGTTCAA+AGG + chr6_4:55125881-55125900 None:intergenic 45.0%
! GAGATTCTCTGTAAGGCGTT+AGG - chr6_4:55125971-55125990 Msa0991270:intron 45.0%
! AAAGAGTTTTCTACCGGGGT+GGG + chr6_4:55126083-55126102 None:intergenic 45.0%
CTGGAGGAATACCTTCGTTA+AGG - chr6_4:55126132-55126151 Msa0991270:intron 45.0%
!! TTGTGCTGTTGCTGCAGTTT+TGG - chr6_4:55126171-55126190 Msa0991270:intron 45.0%
!!! GTTGCTGCAGTTTTGGTTGA+AGG - chr6_4:55126178-55126197 Msa0991270:intron 45.0%
GGGTCAAATGTCCAACTCAT+TGG + chr6_4:55126217-55126236 None:intergenic 45.0%
ACATAACCTATCACAGCAGC+GGG + chr6_4:55126238-55126257 None:intergenic 45.0%
AGCTACAAGCAGACCAATTC+AGG + chr6_4:55126360-55126379 None:intergenic 45.0%
GGTGAGTATGGATGTTGATC+AGG - chr6_4:55126602-55126621 Msa0991270:intron 45.0%
GAGTATGGATGTTGATCAGG+TGG - chr6_4:55126605-55126624 Msa0991270:intron 45.0%
GACGGAATCATTCTGGCATA+AGG - chr6_4:55126769-55126788 Msa0991270:intron 45.0%
TCGTGGTTACAGGTATATGG+CGG - chr6_4:55126916-55126935 Msa0991270:intron 45.0%
! TTACAGGTATATGGCGGAGA+AGG - chr6_4:55126922-55126941 Msa0991270:intron 45.0%
TCCCCTAGTAGATGTTGATG+TGG - chr6_4:55126946-55126965 Msa0991270:intron 45.0%
CGTCCACATCAACATCTACT+AGG + chr6_4:55126952-55126971 None:intergenic 45.0%
GGTGAGCAAGTATGACGATT+TGG - chr6_4:55126979-55126998 Msa0991270:intron 45.0%
CTTGTTTCCTCTCCATGACA+TGG + chr6_4:55127048-55127067 None:intergenic 45.0%
GATGGCTTCGAAAAGTCTTG+AGG - chr6_4:55127094-55127113 Msa0991270:intron 45.0%
AGCGACCTCGAATACTGAAA+AGG - chr6_4:55127124-55127143 Msa0991270:five_prime_UTR 45.0%
GACCTCGAATACTGAAAAGG+AGG - chr6_4:55127069-55127088 Msa0991270:intron 45.0%
!! TAAGGAAAAAAGCGCTCAGC+TGG - chr6_4:55127175-55127194 Msa0991270:five_prime_UTR 45.0%
!! AAGAGTGTTGAGCTTGCTCA+CGG + chr6_4:55127265-55127284 None:intergenic 45.0%
GGCCACTAAAATCAGCATCA+GGG + chr6_4:55127289-55127308 None:intergenic 45.0%
AGGCCACTAAAATCAGCATC+AGG + chr6_4:55127290-55127309 None:intergenic 45.0%
!! TAAAAAAAAAAATAAAGTTA+AGG + chr6_4:55123213-55123232 None:intergenic 5.0%
TCTATATACTCCCTCCGTCC+CGG - chr6_4:55121500-55121519 Msa0991270:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr6_4:55121517-55121536 None:intergenic 50.0%
GTCAATTATACCGGGACGGA+GGG - chr6_4:55121713-55121732 Msa0991270:intron 50.0%
TGTAGAAGGGTCAGGCTTGA+AGG - chr6_4:55121871-55121890 Msa0991270:intron 50.0%
CCCAGGCTCTATGAAATTCC+TGG - chr6_4:55122159-55122178 Msa0991270:intron 50.0%
GCCAGGAATTTCATAGAGCC+TGG + chr6_4:55122163-55122182 None:intergenic 50.0%
CAGCAAAGTATGAGGCACAG+TGG + chr6_4:55122612-55122631 None:intergenic 50.0%
ACATTTAGGAGTGACGCGGT+CGG - chr6_4:55122791-55122810 Msa0991270:intron 50.0%
GTCGGATCCACAAAATCCAG+GGG - chr6_4:55122911-55122930 Msa0991270:intron 50.0%
TCCAGGGGATCAATAGGAGT+TGG - chr6_4:55122926-55122945 Msa0991270:intron 50.0%
TCCAACTCCTATTGATCCCC+TGG + chr6_4:55122930-55122949 None:intergenic 50.0%
GGTATATCTGACGACCACAG+AGG - chr6_4:55123040-55123059 Msa0991270:intron 50.0%
TATCTGACGACCACAGAGGA+TGG - chr6_4:55123044-55123063 Msa0991270:intron 50.0%
TTCTTGGGGAGGGAAGACAT+TGG - chr6_4:55123088-55123107 Msa0991270:intron 50.0%
! GAGGTCTCTTTGTTTGGAGG+TGG - chr6_4:55123134-55123153 Msa0991270:intron 50.0%
TTGTTTGGAGGTGGAGCTCT+TGG - chr6_4:55123143-55123162 Msa0991270:intron 50.0%
TGTTTGGAGGTGGAGCTCTT+GGG - chr6_4:55123144-55123163 Msa0991270:intron 50.0%
ACAAAAGGGTCACGGAAAGG+CGG - chr6_4:55123379-55123398 Msa0991270:intron 50.0%
GTCACTTGCCTGAGAGAGTT+AGG - chr6_4:55123543-55123562 Msa0991270:intron 50.0%
ACTTGCCTGAGAGAGTTAGG+CGG - chr6_4:55123546-55123565 Msa0991270:intron 50.0%
TACTTCCGCCTAACTCTCTC+AGG + chr6_4:55123554-55123573 None:intergenic 50.0%
GAGAGAGTTAGGCGGAAGTA+CGG - chr6_4:55123554-55123573 Msa0991270:intron 50.0%
TCGTGTGAGTACGGAAGTCA+AGG + chr6_4:55123652-55123671 None:intergenic 50.0%
ACACGATTAAGGAGCCCGAT+TGG - chr6_4:55123666-55123685 Msa0991270:intron 50.0%
CATCATGTCTCCTATCCTGC+TGG + chr6_4:55123698-55123717 None:intergenic 50.0%
CAGCAGGATAGGAGACATGA+TGG - chr6_4:55123696-55123715 Msa0991270:intron 50.0%
! TAGGGTGTCTCACTTCTTCC+AGG - chr6_4:55123748-55123767 Msa0991270:intron 50.0%
TTCTTCCAGGAGATCTCACG+AGG - chr6_4:55123761-55123780 Msa0991270:intron 50.0%
ACAACAGTGGGAGTAGTACG+AGG - chr6_4:55123810-55123829 Msa0991270:intron 50.0%
CTCGCCTGATACCTATGACA+TGG - chr6_4:55123840-55123859 Msa0991270:intron 50.0%
CCTCACCTCCAGGTCAATAT+GGG + chr6_4:55123959-55123978 None:intergenic 50.0%
ACACTACTCCTGCTCCTGTT+CGG + chr6_4:55124005-55124024 None:intergenic 50.0%
!! GCTTGGTGTCCAAGCAATAG+GGG - chr6_4:55124310-55124329 Msa0991270:intron 50.0%
CTAATAAAGGCGGTGCCCTA+AGG - chr6_4:55124373-55124392 Msa0991270:intron 50.0%
! GGGCGCATGATCCATTTTAG+AGG - chr6_4:55124429-55124448 Msa0991270:intron 50.0%
GGCTTAGAGAGCCTTTCTAG+AGG - chr6_4:55124451-55124470 Msa0991270:intron 50.0%
TTGTCCCAAGACTCGTGCTT+GGG + chr6_4:55124516-55124535 None:intergenic 50.0%
ATACATGGTGCCCTCCAGAA+GGG + chr6_4:55124566-55124585 None:intergenic 50.0%
AATACATGGTGCCCTCCAGA+AGG + chr6_4:55124567-55124586 None:intergenic 50.0%
CAAGCACGAGTCTTGGAACA+AGG - chr6_4:55124620-55124639 Msa0991270:intron 50.0%
TTCTTTCGGAGGATCCTCCT+AGG - chr6_4:55124693-55124712 Msa0991270:intron 50.0%
TCTTTCGGAGGATCCTCCTA+GGG - chr6_4:55124694-55124713 Msa0991270:intron 50.0%
!! CACTTTAGGATCACCCTAGG+AGG + chr6_4:55124710-55124729 None:intergenic 50.0%
AAAGCGCACATAAACCCTCG+GGG + chr6_4:55124743-55124762 None:intergenic 50.0%
TTCGAACACGTCATCGACAC+TGG + chr6_4:55125004-55125023 None:intergenic 50.0%
CGTGTCTCTGTTCATTGGAG+AGG - chr6_4:55125042-55125061 Msa0991270:intron 50.0%
!!! GGACTGCATGTTTTTCGAGG+CGG - chr6_4:55125063-55125082 Msa0991270:intron 50.0%
GTGTGCTTGTTCGTCTGCTT+TGG - chr6_4:55125177-55125196 Msa0991270:intron 50.0%
TTCCTCTCAAGTTCACTCGC+AGG + chr6_4:55125332-55125351 None:intergenic 50.0%
CTCGAGATCTGTCCCTGATT+TGG + chr6_4:55125543-55125562 None:intergenic 50.0%
CAAATCAGGGACAGATCTCG+AGG - chr6_4:55125541-55125560 Msa0991270:intron 50.0%
AATCAGGGACAGATCTCGAG+GGG - chr6_4:55125543-55125562 Msa0991270:intron 50.0%
TGTGTATACACCTTTGCCGC+TGG - chr6_4:55125586-55125605 Msa0991270:intron 50.0%
TTCTCACTTTCCAGCGGCAA+AGG + chr6_4:55125599-55125618 None:intergenic 50.0%
TTTGCCGCTGGAAAGTGAGA+AGG - chr6_4:55125598-55125617 Msa0991270:intron 50.0%
TTGCCGCTGGAAAGTGAGAA+GGG - chr6_4:55125599-55125618 Msa0991270:intron 50.0%
! AAAGCTCGGTGGATTTCTGG+CGG - chr6_4:55125705-55125724 Msa0991270:intron 50.0%
!! GGTGCTATTGTGCTGTGATG+AGG - chr6_4:55125769-55125788 Msa0991270:intron 50.0%
!! GTGGCTCTTTAGAGCTCAGA+TGG - chr6_4:55125800-55125819 Msa0991270:intron 50.0%
! CCCTTTGAACGCCTTTGAAG+TGG - chr6_4:55125877-55125896 Msa0991270:intron 50.0%
TTAGGCATAGAGCCCTCTCT+TGG - chr6_4:55125989-55126008 Msa0991270:intron 50.0%
ATCACTATTAGTGCCCACCC+CGG - chr6_4:55126067-55126086 Msa0991270:CDS 50.0%
! GAAAGAGTTTTCTACCGGGG+TGG + chr6_4:55126084-55126103 None:intergenic 50.0%
! GCGGAAAGAGTTTTCTACCG+GGG + chr6_4:55126087-55126106 None:intergenic 50.0%
! GGCGGAAAGAGTTTTCTACC+GGG + chr6_4:55126088-55126107 None:intergenic 50.0%
! GGGCGGAAAGAGTTTTCTAC+CGG + chr6_4:55126089-55126108 None:intergenic 50.0%
TGCTCCCCTTACCTTAACGA+AGG + chr6_4:55126146-55126165 None:intergenic 50.0%
CATAACCTATCACAGCAGCG+GGG + chr6_4:55126237-55126256 None:intergenic 50.0%
TGCTGACATTCACCAGCTTC+TGG - chr6_4:55126288-55126307 Msa0991270:intron 50.0%
CATTCACCAGCTTCTGGACA+AGG - chr6_4:55126294-55126313 Msa0991270:intron 50.0%
ACCAGCTTCTGGACAAGGAA+GGG - chr6_4:55126299-55126318 Msa0991270:intron 50.0%
GGACAAGGAAGGGGATTCAA+AGG - chr6_4:55126309-55126328 Msa0991270:intron 50.0%
GGAAGGGGATTCAAAGGATC+TGG - chr6_4:55126315-55126334 Msa0991270:intron 50.0%
TGCTAAGCTGAAGGCGAAGA+AGG - chr6_4:55126482-55126501 Msa0991270:intron 50.0%
AAGGCGAAGAAGGCTGCTAA+CGG - chr6_4:55126492-55126511 Msa0991270:intron 50.0%
TACGCTACTAGTGATCCTGC+AGG - chr6_4:55126516-55126535 Msa0991270:intron 50.0%
ATCCATACTCACCTGACCAG+GGG + chr6_4:55126595-55126614 None:intergenic 50.0%
CATCCATACTCACCTGACCA+GGG + chr6_4:55126596-55126615 None:intergenic 50.0%
ACATCCATACTCACCTGACC+AGG + chr6_4:55126597-55126616 None:intergenic 50.0%
! GACGTTGCTGGTATCGAGAT+TGG - chr6_4:55126639-55126658 Msa0991270:intron 50.0%
! ACGAAGCGTCAGCATACTGT+TGG - chr6_4:55126689-55126708 Msa0991270:intron 50.0%
AAGCGTCAGCATACTGTTGG+CGG - chr6_4:55126692-55126711 Msa0991270:intron 50.0%
GTAGATGTTGATGTGGACGC+AGG - chr6_4:55126953-55126972 Msa0991270:intron 50.0%
TGTTGATGTGGACGCAGGTA+TGG - chr6_4:55126958-55126977 Msa0991270:intron 50.0%
!! GACGATTTGGTGAAGGATGC+AGG - chr6_4:55126992-55127011 Msa0991270:intron 50.0%
ATGCAGGAGAATCTGCCTTG+AGG - chr6_4:55127008-55127027 Msa0991270:intron 50.0%
! GGCCTCCTTTTCAGTATTCG+AGG + chr6_4:55127132-55127151 None:intergenic 50.0%
TGAAAAGGAGGCCATTGAGC+TGG - chr6_4:55127139-55127158 Msa0991270:five_prime_UTR 50.0%
!! AAAAAGCGCTCAGCTGGAAG+AGG - chr6_4:55127181-55127200 Msa0991270:five_prime_UTR 50.0%
!! GATGAAATGCAAAGGCGCCT+TGG - chr6_4:55127208-55127227 Msa0991270:five_prime_UTR 50.0%
!! AGAGTGTTGAGCTTGCTCAC+GGG + chr6_4:55127264-55127283 None:intergenic 50.0%
AGGAACTTACCGATCGAGCC+CGG + chr6_4:55120663-55120682 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr6_4:55121513-55121532 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr6_4:55121712-55121731 Msa0991270:intron 55.0%
CTGGCTCCGCCACTGAATTA+GGG - chr6_4:55122178-55122197 Msa0991270:intron 55.0%
TGGCTCCGCCACTGAATTAG+GGG - chr6_4:55122179-55122198 Msa0991270:intron 55.0%
ATGTAGCCGCTAGCCCAAAG+CGG + chr6_4:55122567-55122586 None:intergenic 55.0%
! GGGCTAGCGGCTACATGATT+TGG - chr6_4:55122571-55122590 Msa0991270:intron 55.0%
GTAACGGTCAACTCCCCCAA+GGG + chr6_4:55122683-55122702 None:intergenic 55.0%
AGTAACGGTCAACTCCCCCA+AGG + chr6_4:55122684-55122703 None:intergenic 55.0%
GGGGGAGTTGACCGTTACTT+TGG - chr6_4:55122685-55122704 Msa0991270:intron 55.0%
GTTTGGAGGTGGAGCTCTTG+GGG - chr6_4:55123145-55123164 Msa0991270:intron 55.0%
TTTGGAGGTGGAGCTCTTGG+GGG - chr6_4:55123146-55123165 Msa0991270:intron 55.0%
!! TCCTGCTGGCTCACTCCAAT+CGG + chr6_4:55123684-55123703 None:intergenic 55.0%
TTGGAGTGAGCCAGCAGGAT+AGG - chr6_4:55123685-55123704 Msa0991270:intron 55.0%
TCTCACGAGGCCAGCTAATG+AGG - chr6_4:55123774-55123793 Msa0991270:intron 55.0%
GGGTCAAGTTCCCTGAGCAA+TGG - chr6_4:55123897-55123916 Msa0991270:intron 55.0%
GTTCCCTGAGCAATGGTCTG+CGG - chr6_4:55123904-55123923 Msa0991270:intron 55.0%
TGCGGCCATGCAGTATGTGA+GGG - chr6_4:55123922-55123941 Msa0991270:intron 55.0%
CCATGCAGTATGTGAGGGAG+CGG - chr6_4:55123927-55123946 Msa0991270:intron 55.0%
GGATCGCACCCATATTGACC+TGG - chr6_4:55123948-55123967 Msa0991270:intron 55.0%
TCGCACCCATATTGACCTGG+AGG - chr6_4:55123951-55123970 Msa0991270:intron 55.0%
CCCATATTGACCTGGAGGTG+AGG - chr6_4:55123956-55123975 Msa0991270:intron 55.0%
GCCTCACCTCCAGGTCAATA+TGG + chr6_4:55123960-55123979 None:intergenic 55.0%
CATGCTTCCTCCTCGGCTTT+CGG + chr6_4:55123982-55124001 None:intergenic 55.0%
TGTTCGGCATGCTTCCTCCT+CGG + chr6_4:55123989-55124008 None:intergenic 55.0%
ATAAAGGCGGTGCCCTAAGG+AGG - chr6_4:55124376-55124395 Msa0991270:intron 55.0%
TAAAGGCGGTGCCCTAAGGA+GGG - chr6_4:55124377-55124396 Msa0991270:intron 55.0%
TGTCCCAAGACTCGTGCTTG+GGG + chr6_4:55124515-55124534 None:intergenic 55.0%
CTTGTCCCAAGACTCGTGCT+TGG + chr6_4:55124517-55124536 None:intergenic 55.0%
CAAGCACGAGTCTTGGGACA+AGG - chr6_4:55124515-55124534 Msa0991270:intron 55.0%
TATGGGATAGGCCCTTCTGG+AGG - chr6_4:55124552-55124571 Msa0991270:intron 55.0%
ATGGGATAGGCCCTTCTGGA+GGG - chr6_4:55124553-55124572 Msa0991270:intron 55.0%
GGGGGCTTCCAGAACACTTT+AGG + chr6_4:55124724-55124743 None:intergenic 55.0%
AAGCGCACATAAACCCTCGG+GGG + chr6_4:55124742-55124761 None:intergenic 55.0%
TTGTCCCCAGACTCGTGCTT+GGG + chr6_4:55124858-55124877 None:intergenic 55.0%
! GCTTGTTCGTCTGCTTTGGG+AGG - chr6_4:55125181-55125200 Msa0991270:intron 55.0%
CTCTCAAGTTCACTCGCAGG+TGG + chr6_4:55125329-55125348 None:intergenic 55.0%
CACCTGCGAGTGAACTTGAG+AGG - chr6_4:55125327-55125346 Msa0991270:intron 55.0%
ATCAGGGACAGATCTCGAGG+GGG - chr6_4:55125544-55125563 Msa0991270:intron 55.0%
ACAGATCTCGAGGGGGAATC+TGG - chr6_4:55125551-55125570 Msa0991270:intron 55.0%
ATCTCGAGGGGGAATCTGGT+CGG - chr6_4:55125555-55125574 Msa0991270:intron 55.0%
GCATGTGGAAGAAAGCTCGG+TGG - chr6_4:55125694-55125713 Msa0991270:intron 55.0%
!! TGGATTTCTGGCGGAGTGAG+TGG - chr6_4:55125714-55125733 Msa0991270:intron 55.0%
!! GGATTTCTGGCGGAGTGAGT+GGG - chr6_4:55125715-55125734 Msa0991270:intron 55.0%
! CTGTGATGAGGGAGAGCATG+TGG - chr6_4:55125781-55125800 Msa0991270:intron 55.0%
TTACATGTACGCGGCGGTCT+TGG - chr6_4:55125835-55125854 Msa0991270:intron 55.0%
TTTGTGCAGGCGCCACATTC+AGG + chr6_4:55125916-55125935 None:intergenic 55.0%
TTTGACCCCGCTGCTGTGAT+AGG - chr6_4:55126229-55126248 Msa0991270:intron 55.0%
CACCAGCTTCTGGACAAGGA+AGG - chr6_4:55126298-55126317 Msa0991270:intron 55.0%
CCAGCTTCTGGACAAGGAAG+GGG - chr6_4:55126300-55126319 Msa0991270:intron 55.0%
AGGCGAAGAAGGCTGCTAAC+GGG - chr6_4:55126493-55126512 Msa0991270:intron 55.0%
GGGGCGATCTCTTCCTTTGA+AGG + chr6_4:55126576-55126595 None:intergenic 55.0%
TCAAAGGAAGAGATCGCCCC+TGG - chr6_4:55126576-55126595 Msa0991270:intron 55.0%
GAAAACGCAAGCGACGTTGC+TGG - chr6_4:55126627-55126646 Msa0991270:intron 55.0%
AGCGTCAGCATACTGTTGGC+GGG - chr6_4:55126693-55126712 Msa0991270:intron 55.0%
GCTGGAGAGGGACTCCTTTA+AGG - chr6_4:55127157-55127176 Msa0991270:five_prime_UTR 55.0%
GGAACTTACCGATCGAGCCC+GGG + chr6_4:55120662-55120681 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr6_4:55121514-55121533 None:intergenic 60.0%
AGAGCTTACTCCCTCCGTCC+CGG + chr6_4:55121726-55121745 None:intergenic 60.0%
! CCTAATTCAGTGGCGGAGCC+AGG + chr6_4:55122180-55122199 None:intergenic 60.0%
CCTGGCTCCGCCACTGAATT+AGG - chr6_4:55122177-55122196 Msa0991270:intron 60.0%
! TGGGATCCGCTTTGGGCTAG+CGG - chr6_4:55122558-55122577 Msa0991270:intron 60.0%
TTTAGGAGTGACGCGGTCGG+AGG - chr6_4:55122794-55122813 Msa0991270:intron 60.0%
GACCACAGAGGATGGCTACG+CGG - chr6_4:55123052-55123071 Msa0991270:intron 60.0%
ACCACAGAGGATGGCTACGC+GGG - chr6_4:55123053-55123072 Msa0991270:intron 60.0%
!! CCTGCTGGCTCACTCCAATC+GGG + chr6_4:55123683-55123702 None:intergenic 60.0%
TGGGAGTAGTACGAGGCGAG+AGG - chr6_4:55123817-55123836 Msa0991270:intron 60.0%
TGGCCGCAGACCATTGCTCA+GGG + chr6_4:55123910-55123929 None:intergenic 60.0%
ATGGCCGCAGACCATTGCTC+AGG + chr6_4:55123911-55123930 None:intergenic 60.0%
CTGCGGCCATGCAGTATGTG+AGG - chr6_4:55123921-55123940 Msa0991270:intron 60.0%
CCGCTCCCTCACATACTGCA+TGG + chr6_4:55123930-55123949 None:intergenic 60.0%
! GAGGAGGAAGCATGCCGAAC+AGG - chr6_4:55123988-55124007 Msa0991270:intron 60.0%
GAAGCATGCCGAACAGGAGC+AGG - chr6_4:55123994-55124013 Msa0991270:intron 60.0%
GGGCTTGGGTTTCGGTTGCT+TGG - chr6_4:55124293-55124312 Msa0991270:intron 60.0%
GGATCATGCGCCCTCCAGAA+GGG + chr6_4:55124422-55124441 None:intergenic 60.0%
TGGATCATGCGCCCTCCAGA+AGG + chr6_4:55124423-55124442 None:intergenic 60.0%
AGCCCCCAAGCACGAGTCTT+GGG - chr6_4:55124509-55124528 Msa0991270:intron 60.0%
GTCCCAAGACTCGTGCTTGG+GGG + chr6_4:55124514-55124533 None:intergenic 60.0%
!! AAGTGTTCTGGAAGCCCCCG+AGG - chr6_4:55124725-55124744 Msa0991270:intron 60.0%
!! AGTGTTCTGGAAGCCCCCGA+GGG - chr6_4:55124726-55124745 Msa0991270:intron 60.0%
CTCGTGCTTGGGGGGCTATT+TGG + chr6_4:55124847-55124866 None:intergenic 60.0%
TGTCCCCAGACTCGTGCTTG+GGG + chr6_4:55124857-55124876 None:intergenic 60.0%
CTTGTCCCCAGACTCGTGCT+TGG + chr6_4:55124859-55124878 None:intergenic 60.0%
CAAGCACGAGTCTGGGGACA+AGG - chr6_4:55124857-55124876 Msa0991270:intron 60.0%
TCTCGAGGGGGAATCTGGTC+GGG - chr6_4:55125556-55125575 Msa0991270:intron 60.0%
CCCCTTCCTTGTCCAGAAGC+TGG + chr6_4:55126303-55126322 None:intergenic 60.0%
CTTCGATGGATCACGCCTGC+AGG + chr6_4:55126534-55126553 None:intergenic 60.0%
CTGCAGGCGTGATCCATCGA+AGG - chr6_4:55126532-55126551 Msa0991270:intron 60.0%
GCGTCAGCATACTGTTGGCG+GGG - chr6_4:55126694-55126713 Msa0991270:intron 60.0%
AGGAGGCCATTGAGCTGGAG+AGG - chr6_4:55127144-55127163 Msa0991270:five_prime_UTR 60.0%
GGAGGCCATTGAGCTGGAGA+GGG - chr6_4:55127145-55127164 Msa0991270:five_prime_UTR 60.0%
GGAGTCCCTCTCCAGCTCAA+TGG + chr6_4:55127153-55127172 None:intergenic 60.0%
CCACAGAGGATGGCTACGCG+GGG - chr6_4:55123054-55123073 Msa0991270:intron 65.0%
CCCGATTGGAGTGAGCCAGC+AGG - chr6_4:55123680-55123699 Msa0991270:intron 65.0%
! GCTGGCCTCGTGAGATCTCC+TGG + chr6_4:55123769-55123788 None:intergenic 65.0%
GCCTAGGTGCGCCCTCCTTA+GGG + chr6_4:55124391-55124410 None:intergenic 65.0%
CAGAAGGGCTCCTGAGGCCT+AGG + chr6_4:55124407-55124426 None:intergenic 65.0%
CTAGGCCTCAGGAGCCCTTC+TGG - chr6_4:55124405-55124424 Msa0991270:intron 65.0%
GCCTCAGGAGCCCTTCTGGA+GGG - chr6_4:55124409-55124428 Msa0991270:intron 65.0%
CAGCCCCCAAGCACGAGTCT+TGG - chr6_4:55124508-55124527 Msa0991270:intron 65.0%
TAGCCCCCCAAGCACGAGTC+TGG - chr6_4:55124849-55124868 Msa0991270:intron 65.0%
AGCCCCCCAAGCACGAGTCT+GGG - chr6_4:55124850-55124869 Msa0991270:intron 65.0%
TCCCCAGACTCGTGCTTGGG+GGG + chr6_4:55124855-55124874 None:intergenic 65.0%
GTCCCCAGACTCGTGCTTGG+GGG + chr6_4:55124856-55124875 None:intergenic 65.0%
CATGTACGCGGCGGTCTTGG+AGG - chr6_4:55125838-55125857 Msa0991270:intron 65.0%
GCGGCGGTCTTGGAGGAGTT+TGG - chr6_4:55125845-55125864 Msa0991270:intron 65.0%
GGAAGAGATCGCCCCTGGTC+AGG - chr6_4:55126581-55126600 Msa0991270:intron 65.0%
CGCCCCTGGTCAGGTGAGTA+TGG - chr6_4:55126590-55126609 Msa0991270:intron 65.0%
! GCAGTGGCGGAGACAGAGCC+CGG - chr6_4:55120620-55120639 Msa0991270:CDS 70.0%
CCCCGCGTAGCCATCCTCTG+TGG + chr6_4:55123057-55123076 None:intergenic 70.0%
CGGCTTTCGGCCTCACCTCC+AGG + chr6_4:55123969-55123988 None:intergenic 70.0%
GGAGGTGAGGCCGAAAGCCG+AGG - chr6_4:55123969-55123988 Msa0991270:intron 70.0%
GGTGAGGCCGAAAGCCGAGG+AGG - chr6_4:55123972-55123991 Msa0991270:intron 70.0%
! GCCCTAAGGAGGGCGCACCT+AGG - chr6_4:55124387-55124406 Msa0991270:intron 70.0%
GGCCTAGGTGCGCCCTCCTT+AGG + chr6_4:55124392-55124411 None:intergenic 70.0%
GGCCTCAGGAGCCCTTCTGG+AGG - chr6_4:55124408-55124427 Msa0991270:intron 70.0%
GCCCTCCAGAAGGGCTCCTG+AGG + chr6_4:55124413-55124432 None:intergenic 70.0%
GCCCCCCAAGCACGAGTCTG+GGG - chr6_4:55124851-55124870 Msa0991270:intron 70.0%
GAGACAGAGCCCGGCGACCC+CGG - chr6_4:55120629-55120648 Msa0991270:CDS 75.0%
AGACAGAGCCCGGCGACCCC+GGG - chr6_4:55120630-55120649 Msa0991270:CDS 75.0%
! GGAGGGCGCACCTAGGCCTC+AGG - chr6_4:55124394-55124413 Msa0991270:intron 75.0%
! ATCGAGCCCGGGCGACCGCC+CGG + chr6_4:55120651-55120670 None:intergenic 80.0%
! GGCGGTCGCCCGGGCTCGAT+CGG - chr6_4:55120651-55120670 Msa0991270:CDS 80.0%
! CAGAGCCCGGCGACCCCGGG+CGG - chr6_4:55120633-55120652 Msa0991270:CDS 85.0%
! TCGAGCCCGGGCGACCGCCC+GGG + chr6_4:55120650-55120669 None:intergenic 85.0%
! GGCGACCGCCCGGGGTCGCC+GGG + chr6_4:55120641-55120660 None:intergenic 90.0%
! GGGCGACCGCCCGGGGTCGC+CGG + chr6_4:55120642-55120661 None:intergenic 90.0%
! GGCGACCCCGGGCGGTCGCC+CGG - chr6_4:55120641-55120660 Msa0991270:CDS 90.0%
! GCGACCCCGGGCGGTCGCCC+GGG - chr6_4:55120642-55120661 Msa0991270:CDS 90.0%
! CGAGCCCGGGCGACCGCCCG+GGG + chr6_4:55120649-55120668 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 55120620 55127355 55120620 ID=Msa0991270;Name=Msa0991270
chr6_4 mRNA 55120620 55127355 55120620 ID=Msa0991270-mRNA-1;Parent=Msa0991270;Name=Msa0991270-mRNA-1;_AED=0.20;_eAED=0.20;_QI=271|0.66|0.75|0.75|0|0.25|4|0|85
chr6_4 exon 55120620 55120788 55120620 ID=Msa0991270-mRNA-1:exon:11271;Parent=Msa0991270-mRNA-1
chr6_4 exon 55126052 55126120 55126052 ID=Msa0991270-mRNA-1:exon:11270;Parent=Msa0991270-mRNA-1
chr6_4 exon 55126823 55126874 55126823 ID=Msa0991270-mRNA-1:exon:11269;Parent=Msa0991270-mRNA-1
chr6_4 exon 55127120 55127355 55127120 ID=Msa0991270-mRNA-1:exon:11268;Parent=Msa0991270-mRNA-1
chr6_4 five_prime_UTR 55127120 55127355 55127120 ID=Msa0991270-mRNA-1:five_prime_utr;Parent=Msa0991270-mRNA-1
chr6_4 five_prime_UTR 55126840 55126874 55126840 ID=Msa0991270-mRNA-1:five_prime_utr;Parent=Msa0991270-mRNA-1
chr6_4 CDS 55126823 55126839 55126823 ID=Msa0991270-mRNA-1:cds;Parent=Msa0991270-mRNA-1
chr6_4 CDS 55126052 55126120 55126052 ID=Msa0991270-mRNA-1:cds;Parent=Msa0991270-mRNA-1
chr6_4 CDS 55120620 55120788 55120620 ID=Msa0991270-mRNA-1:cds;Parent=Msa0991270-mRNA-1
Gene Sequence

>Msa0991270

ATGTTTGGTACTCAAGGGTCACATTCCAGAATTTGTAGAAGGGTCAGGCTTGAAGGTGCTAAACTTGGGAAGCAACAATATCTCAGCGCTCAGCTGGAAGAGGAAGTGATGAAATGCAAAGGCGCCTTGGCAGAATATTTTGTCGATGGGTTTGAACGCGCCCGTGAGCAAGCTCAACACTCTTACCCTGATGCTGATTTTAGTGGCCTCGACTCATACAAAATCGTTAAAGATGGGAAGTTGATTGATGAAGAA
Protein sequence

>Msa0991270

MFGTQGSHSRICRRVRLEGAKLGKQQYLSAQLEEEVMKCKGALAEYFVDGFERAREQAQHSYPDADFSGLDSYKIVKDGKLIDEE