Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386120 | XP_003625808.1 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.57e-125 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386120 | sp|Q9ZNV5|CEN_ARATH | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.66e-97 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386120 | G7L629 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.18e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa1386120 | 0.829511 | 4.940974e-55 | -8.615850e-47 |
| Msa0010150 | Msa1386120 | 0.803831 | 2.889579e-49 | -8.615850e-47 |
| Msa0012820 | Msa1386120 | 0.801511 | 8.700980e-49 | -8.615850e-47 |
| Msa0045850 | Msa1386120 | 0.803523 | 3.347676e-49 | -8.615850e-47 |
| Msa0048950 | Msa1386120 | 0.834113 | 3.616481e-56 | -8.615850e-47 |
| Msa0057860 | Msa1386120 | 0.808187 | 3.503527e-50 | -8.615850e-47 |
| Msa0059880 | Msa1386120 | 0.849979 | 2.283366e-60 | -8.615850e-47 |
| Msa0061600 | Msa1386120 | 0.802283 | 6.038974e-49 | -8.615850e-47 |
| Msa0072030 | Msa1386120 | 0.834285 | 3.273756e-56 | -8.615850e-47 |
| Msa0073280 | Msa1386120 | 0.809078 | 2.260322e-50 | -8.615850e-47 |
| Msa0074620 | Msa1386120 | 0.817355 | 3.443337e-52 | -8.615850e-47 |
| Msa0084150 | Msa1386120 | 0.805470 | 1.314124e-49 | -8.615850e-47 |
| Msa0102920 | Msa1386120 | 0.822197 | 2.694093e-53 | -8.615850e-47 |
| Msa1350490 | Msa1386120 | 0.804724 | 1.883243e-49 | -8.615850e-47 |
| Msa1355340 | Msa1386120 | 0.810268 | 1.254346e-50 | -8.615850e-47 |
| Msa1357490 | Msa1386120 | 0.827617 | 1.417346e-54 | -8.615850e-47 |
| Msa1357860 | Msa1386120 | 0.809871 | 1.527279e-50 | -8.615850e-47 |
| Msa1373560 | Msa1386120 | 0.805941 | 1.046547e-49 | -8.615850e-47 |
| Msa1376070 | Msa1386120 | 0.846849 | 1.676889e-59 | -8.615850e-47 |
| Msa1377520 | Msa1386120 | 0.829821 | 4.153767e-55 | -8.615850e-47 |
| Msa1378400 | Msa1386120 | 0.812743 | 3.635764e-51 | -8.615850e-47 |
| Msa1378950 | Msa1386120 | 0.811009 | 8.673790e-51 | -8.615850e-47 |
| Msa1386120 | Msa1407670 | 0.811170 | 8.004103e-51 | -8.615850e-47 |
| Msa1386120 | Msa1411550 | 0.827737 | 1.326452e-54 | -8.615850e-47 |
| Msa1386120 | Msa1420020 | 0.802242 | 6.155693e-49 | -8.615850e-47 |
| Msa1386120 | Msa1421120 | 0.823627 | 1.250917e-53 | -8.615850e-47 |
| Msa1386120 | Msa1421130 | 0.814526 | 1.473447e-51 | -8.615850e-47 |
| Msa1386120 | Msa1426420 | 0.825254 | 5.182943e-54 | -8.615850e-47 |
| Msa1386120 | Msa1427670 | 0.999948 | 0.000000e+00 | -8.615850e-47 |
| Msa1386120 | Msa1438860 | 0.803992 | 2.674810e-49 | -8.615850e-47 |
| Msa1386120 | Msa1445900 | 0.814917 | 1.206692e-51 | -8.615850e-47 |
| Msa1386120 | Msa1449770 | 0.815183 | 1.053413e-51 | -8.615850e-47 |
| Msa1386120 | Msa1459610 | 0.839447 | 1.575848e-57 | -8.615850e-47 |
| Msa0603950 | Msa1386120 | 0.842454 | 2.560410e-58 | -8.615850e-47 |
| Msa0605470 | Msa1386120 | 0.828916 | 6.889538e-55 | -8.615850e-47 |
| Msa0631700 | Msa1386120 | 0.817394 | 3.373308e-52 | -8.615850e-47 |
| Msa0640290 | Msa1386120 | 0.827357 | 1.636215e-54 | -8.615850e-47 |
| Msa0643190 | Msa1386120 | 0.813303 | 2.740896e-51 | -8.615850e-47 |
| Msa0643840 | Msa1386120 | 0.816020 | 6.859256e-52 | -8.615850e-47 |
| Msa0645060 | Msa1386120 | 0.806876 | 6.646578e-50 | -8.615850e-47 |
| Msa0645150 | Msa1386120 | 0.802480 | 5.499950e-49 | -8.615850e-47 |
| Msa0670360 | Msa1386120 | 0.838452 | 2.851279e-57 | -8.615850e-47 |
| Msa0678620 | Msa1386120 | 0.833029 | 6.743279e-56 | -8.615850e-47 |
| Msa0684560 | Msa1386120 | 0.820568 | 6.404895e-53 | -8.615850e-47 |
| Msa0684720 | Msa1386120 | 0.830924 | 2.232173e-55 | -8.615850e-47 |
| Msa0711240 | Msa1386120 | 0.800997 | 1.108433e-48 | -8.615850e-47 |
| Msa0716980 | Msa1386120 | 0.810139 | 1.337050e-50 | -8.615850e-47 |
| Msa0727480 | Msa1386120 | 0.833366 | 5.558048e-56 | -8.615850e-47 |
| Msa0735140 | Msa1386120 | 0.801084 | 1.063777e-48 | -8.615850e-47 |
| Msa0735280 | Msa1386120 | 0.825259 | 5.166974e-54 | -8.615850e-47 |
| Msa0735340 | Msa1386120 | 0.801202 | 1.006462e-48 | -8.615850e-47 |
| Msa0758150 | Msa1386120 | 0.811540 | 6.652733e-51 | -8.615850e-47 |
| Msa0768670 | Msa1386120 | 0.830524 | 2.798461e-55 | -8.615850e-47 |
| Msa0768720 | Msa1386120 | 0.827853 | 1.243439e-54 | -8.615850e-47 |
| Msa0777060 | Msa1386120 | 0.801567 | 8.472760e-49 | -8.615850e-47 |
| Msa0777070 | Msa1386120 | 0.818514 | 1.883422e-52 | -8.615850e-47 |
| Msa0777250 | Msa1386120 | 0.821644 | 3.618819e-53 | -8.615850e-47 |
| Msa0787860 | Msa1386120 | 0.808229 | 3.432295e-50 | -8.615850e-47 |
| Msa0791300 | Msa1386120 | 0.817411 | 3.344600e-52 | -8.615850e-47 |
| Msa0814160 | Msa1386120 | 0.827591 | 1.437937e-54 | -8.615850e-47 |
| Msa0814230 | Msa1386120 | 0.805241 | 1.468298e-49 | -8.615850e-47 |
| Msa0817100 | Msa1386120 | 0.813133 | 2.985834e-51 | -8.615850e-47 |
| Msa0824850 | Msa1386120 | 0.802649 | 5.075256e-49 | -8.615850e-47 |
| Msa0824860 | Msa1386120 | 0.824694 | 7.024687e-54 | -8.615850e-47 |
| Msa0121970 | Msa1386120 | 0.802983 | 4.329072e-49 | -8.615850e-47 |
| Msa0131460 | Msa1386120 | 0.821254 | 4.453063e-53 | -8.615850e-47 |
| Msa0139460 | Msa1386120 | 0.822047 | 2.918461e-53 | -8.615850e-47 |
| Msa0140270 | Msa1386120 | 0.828351 | 9.435320e-55 | -8.615850e-47 |
| Msa0143150 | Msa1386120 | 0.957779 | 1.188362e-115 | -8.615850e-47 |
| Msa0143710 | Msa1386120 | 0.814704 | 1.345209e-51 | -8.615850e-47 |
| Msa0143740 | Msa1386120 | 0.803499 | 3.386489e-49 | -8.615850e-47 |
| Msa0143770 | Msa1386120 | 0.808371 | 3.200425e-50 | -8.615850e-47 |
| Msa0147670 | Msa1386120 | 0.824500 | 7.806520e-54 | -8.615850e-47 |
| Msa0147680 | Msa1386120 | 0.828939 | 6.803772e-55 | -8.615850e-47 |
| Msa0150910 | Msa1386120 | 0.823084 | 1.675292e-53 | -8.615850e-47 |
| Msa0163340 | Msa1386120 | 0.800256 | 1.569487e-48 | -8.615850e-47 |
| Msa0170990 | Msa1386120 | 0.816037 | 6.796890e-52 | -8.615850e-47 |
| Msa0177550 | Msa1386120 | 0.813777 | 2.155854e-51 | -8.615850e-47 |
| Msa0190670 | Msa1386120 | 0.818058 | 2.389863e-52 | -8.615850e-47 |
| Msa0195190 | Msa1386120 | 0.815943 | 7.136105e-52 | -8.615850e-47 |
| Msa0219210 | Msa1386120 | 0.805443 | 1.331610e-49 | -8.615850e-47 |
| Msa1233640 | Msa1386120 | 0.801515 | 8.681585e-49 | -8.615850e-47 |
| Msa1269050 | Msa1386120 | 0.824151 | 9.426881e-54 | -8.615850e-47 |
| Msa1296870 | Msa1386120 | 0.824620 | 7.315065e-54 | -8.615850e-47 |
| Msa1300610 | Msa1386120 | 0.806953 | 6.403427e-50 | -8.615850e-47 |
| Msa1323030 | Msa1386120 | 0.859616 | 3.655448e-63 | -8.615850e-47 |
| Msa1323120 | Msa1386120 | 0.821733 | 3.450134e-53 | -8.615850e-47 |
| Msa1323160 | Msa1386120 | 0.830569 | 2.728459e-55 | -8.615850e-47 |
| Msa1329740 | Msa1386120 | 0.807259 | 5.515208e-50 | -8.615850e-47 |
| Msa1341030 | Msa1386120 | 0.805830 | 1.104339e-49 | -8.615850e-47 |
| Msa1343590 | Msa1386120 | 0.939934 | 5.504274e-100 | -8.615850e-47 |
| Msa0366510 | Msa1386120 | 0.817845 | 2.669928e-52 | -8.615850e-47 |
| Msa0374040 | Msa1386120 | 0.802052 | 6.736072e-49 | -8.615850e-47 |
| Msa0374130 | Msa1386120 | 0.823521 | 1.324563e-53 | -8.615850e-47 |
| Msa0396700 | Msa1386120 | 0.811763 | 5.949149e-51 | -8.615850e-47 |
| Msa0414480 | Msa1386120 | 0.821441 | 4.030047e-53 | -8.615850e-47 |
| Msa0444210 | Msa1386120 | 0.816340 | 5.815423e-52 | -8.615850e-47 |
| Msa0469550 | Msa1386120 | 0.819489 | 1.130536e-52 | -8.615850e-47 |
| Msa0472390 | Msa1386120 | 0.803578 | 3.260278e-49 | -8.615850e-47 |
| Msa0985700 | Msa1386120 | 0.853252 | 2.701338e-61 | -8.615850e-47 |
| Msa1006170 | Msa1386120 | 0.811749 | 5.992751e-51 | -8.615850e-47 |
| Msa1015560 | Msa1386120 | 0.811491 | 6.818751e-51 | -8.615850e-47 |
| Msa1020540 | Msa1386120 | 0.803836 | 2.883037e-49 | -8.615850e-47 |
| Msa1021620 | Msa1386120 | 0.824145 | 9.461121e-54 | -8.615850e-47 |
| Msa1022490 | Msa1386120 | 0.809481 | 1.852053e-50 | -8.615850e-47 |
| Msa1022510 | Msa1386120 | 0.816520 | 5.301304e-52 | -8.615850e-47 |
| Msa1024350 | Msa1386120 | 0.828642 | 8.027931e-55 | -8.615850e-47 |
| Msa1026050 | Msa1386120 | 0.803539 | 3.322317e-49 | -8.615850e-47 |
| Msa1061670 | Msa1386120 | 0.837341 | 5.503871e-57 | -8.615850e-47 |
| Msa1064930 | Msa1386120 | 0.800406 | 1.462962e-48 | -8.615850e-47 |
| Msa1064940 | Msa1386120 | 0.809463 | 1.868825e-50 | -8.615850e-47 |
| Msa1076830 | Msa1386120 | 0.840963 | 6.336573e-58 | -8.615850e-47 |
| Msa1081610 | Msa1386120 | 0.808287 | 3.335120e-50 | -8.615850e-47 |
| Msa1087370 | Msa1386120 | 0.821362 | 4.203212e-53 | -8.615850e-47 |
| Msa1087380 | Msa1386120 | 0.811161 | 8.039457e-51 | -8.615850e-47 |
| Msa1100560 | Msa1386120 | 0.800148 | 1.650958e-48 | -8.615850e-47 |
| Msa1106680 | Msa1386120 | 0.812353 | 4.425249e-51 | -8.615850e-47 |
| Msa1106960 | Msa1386120 | 0.831457 | 1.651461e-55 | -8.615850e-47 |
| Msa0241410 | Msa1386120 | 0.800499 | 1.400333e-48 | -8.615850e-47 |
| Msa0259110 | Msa1386120 | 0.802721 | 4.904270e-49 | -8.615850e-47 |
| Msa0269720 | Msa1386120 | 0.811053 | 8.486113e-51 | -8.615850e-47 |
| Msa0274250 | Msa1386120 | 0.832518 | 9.029693e-56 | -8.615850e-47 |
| Msa0274260 | Msa1386120 | 0.808424 | 3.118729e-50 | -8.615850e-47 |
| Msa0278950 | Msa1386120 | 0.814776 | 1.296952e-51 | -8.615850e-47 |
| Msa0298270 | Msa1386120 | 0.826841 | 2.174353e-54 | -8.615850e-47 |
| Msa0314440 | Msa1386120 | 0.805430 | 1.340251e-49 | -8.615850e-47 |
| Msa0336630 | Msa1386120 | 0.830351 | 3.084443e-55 | -8.615850e-47 |
| Msa0349910 | Msa1386120 | 0.815483 | 9.031946e-52 | -8.615850e-47 |
| Msa1109880 | Msa1386120 | 0.817847 | 2.666558e-52 | -8.615850e-47 |
| Msa1109890 | Msa1386120 | 0.846810 | 1.719198e-59 | -8.615850e-47 |
| Msa1136060 | Msa1386120 | 0.803783 | 2.955956e-49 | -8.615850e-47 |
| Msa1149020 | Msa1386120 | 0.805230 | 1.475826e-49 | -8.615850e-47 |
| Msa1164240 | Msa1386120 | 0.817367 | 3.420697e-52 | -8.615850e-47 |
| Msa1164690 | Msa1386120 | 0.904312 | 1.399450e-79 | -8.615850e-47 |
| Msa1170340 | Msa1386120 | 0.807893 | 4.045369e-50 | -8.615850e-47 |
| Msa1173290 | Msa1386120 | 0.812494 | 4.121652e-51 | -8.615850e-47 |
| Msa1181090 | Msa1386120 | 0.805806 | 1.117453e-49 | -8.615850e-47 |
| Msa1181660 | Msa1386120 | 0.808600 | 2.860170e-50 | -8.615850e-47 |
| Msa1216600 | Msa1386120 | 0.830260 | 3.246633e-55 | -8.615850e-47 |
| Msa1220720 | Msa1386120 | 0.800749 | 1.245465e-48 | -8.615850e-47 |
| Msa0491760 | Msa1386120 | 0.823554 | 1.301542e-53 | -8.615850e-47 |
| Msa0491770 | Msa1386120 | 0.818858 | 1.573736e-52 | -8.615850e-47 |
| Msa0491800 | Msa1386120 | 0.814473 | 1.513110e-51 | -8.615850e-47 |
| Msa0515150 | Msa1386120 | 0.801736 | 7.820857e-49 | -8.615850e-47 |
| Msa0515260 | Msa1386120 | 0.819998 | 8.649318e-53 | -8.615850e-47 |
| Msa0525400 | Msa1386120 | 0.816764 | 4.673463e-52 | -8.615850e-47 |
| Msa0531030 | Msa1386120 | 0.805645 | 1.207940e-49 | -8.615850e-47 |
| Msa0531080 | Msa1386120 | 0.810321 | 1.221607e-50 | -8.615850e-47 |
| Msa0535570 | Msa1386120 | 0.819552 | 1.094163e-52 | -8.615850e-47 |
| Msa0538450 | Msa1386120 | 0.813635 | 2.316863e-51 | -8.615850e-47 |
| Msa0538520 | Msa1386120 | 0.810839 | 9.439751e-51 | -8.615850e-47 |
| Msa0540640 | Msa1386120 | 0.802509 | 5.424097e-49 | -8.615850e-47 |
| Msa0543740 | Msa1386120 | 0.819856 | 9.324212e-53 | -8.615850e-47 |
| Msa0548760 | Msa1386120 | 0.800222 | 1.594860e-48 | -8.615850e-47 |
| Msa0548970 | Msa1386120 | 0.812768 | 3.589938e-51 | -8.615850e-47 |
| Msa0584970 | Msa1386120 | 0.802842 | 4.629721e-49 | -8.615850e-47 |
| Msa0587920 | Msa1386120 | 0.821165 | 4.666940e-53 | -8.615850e-47 |
| Msa0591490 | Msa1386120 | 0.831392 | 1.713461e-55 | -8.615850e-47 |
| Msa0594320 | Msa1386120 | 0.820196 | 7.792748e-53 | -8.615850e-47 |
| Msa0599600 | Msa1386120 | 0.822170 | 2.733871e-53 | -8.615850e-47 |
| Msa0602050 | Msa1386120 | 0.814356 | 1.606165e-51 | -8.615850e-47 |
| Msa0854840 | Msa1386120 | 0.836375 | 9.708326e-57 | -8.615850e-47 |
| Msa0861730 | Msa1386120 | 0.811938 | 5.450704e-51 | -8.615850e-47 |
| Msa0863840 | Msa1386120 | 0.812997 | 3.198679e-51 | -8.615850e-47 |
| Msa0864160 | Msa1386120 | 0.820374 | 7.094220e-53 | -8.615850e-47 |
| Msa0883640 | Msa1386120 | 0.854138 | 1.502473e-61 | -8.615850e-47 |
| Msa0890210 | Msa1386120 | 0.801140 | 1.036312e-48 | -8.615850e-47 |
| Msa0896920 | Msa1386120 | 0.816915 | 4.323930e-52 | -8.615850e-47 |
| Msa0896950 | Msa1386120 | 0.806913 | 6.530410e-50 | -8.615850e-47 |
| Msa0902340 | Msa1386120 | 0.813353 | 2.672198e-51 | -8.615850e-47 |
| Msa0907840 | Msa1386120 | 0.802501 | 5.445309e-49 | -8.615850e-47 |
| Msa0910830 | Msa1386120 | 0.858729 | 6.745275e-63 | -8.615850e-47 |
| Msa0910890 | Msa1386120 | 0.808785 | 2.611353e-50 | -8.615850e-47 |
| Msa0913550 | Msa1386120 | 0.801107 | 1.052184e-48 | -8.615850e-47 |
| Msa0932930 | Msa1386120 | 0.808879 | 2.492601e-50 | -8.615850e-47 |
| Msa0941120 | Msa1386120 | 0.837010 | 6.686496e-57 | -8.615850e-47 |
| Msa0960090 | Msa1386120 | 0.856677 | 2.737091e-62 | -8.615850e-47 |
| Msa0962290 | Msa1386120 | 0.811972 | 5.358175e-51 | -8.615850e-47 |
| Msa0967820 | Msa1386120 | 0.818356 | 2.045853e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386120 | MtrunA17_Chr7g0266201 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.20e-129 | 359 |
| Msa1386120 | MtrunA17_Chr2g0321301 | 76.786 | 168 | 39 | 0 | 7 | 174 | 6 | 173 | 4.79e-100 | 285 |
| Msa1386120 | MtrunA17_Chr6g0472451 | 71.429 | 168 | 47 | 1 | 7 | 174 | 6 | 172 | 1.11e-88 | 256 |
| Msa1386120 | MtrunA17_Chr1g0178751 | 67.879 | 165 | 52 | 1 | 1 | 164 | 1 | 165 | 1.01e-85 | 249 |
| Msa1386120 | MtrunA17_Chr7g0252784 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.28e-68 | 205 |
| Msa1386120 | MtrunA17_Chr6g0461711 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.37e-67 | 202 |
| Msa1386120 | MtrunA17_Chr8g0392741 | 54.023 | 174 | 79 | 1 | 1 | 174 | 1 | 173 | 5.56e-63 | 191 |
| Msa1386120 | MtrunA17_Chr7g0214771 | 55.556 | 171 | 74 | 2 | 5 | 174 | 5 | 174 | 6.18e-63 | 192 |
| Msa1386120 | MtrunA17_Chr7g0214761 | 54.971 | 171 | 75 | 2 | 5 | 174 | 5 | 174 | 4.63e-61 | 187 |
| Msa1386120 | MtrunA17_Chr7g0252800 | 55.090 | 167 | 74 | 1 | 8 | 174 | 9 | 174 | 9.45e-60 | 184 |
| Msa1386120 | MtrunA17_Chr7g0252811 | 53.416 | 161 | 73 | 2 | 14 | 174 | 36 | 194 | 9.83e-56 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386120 | AT2G27550.1 | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.75e-98 | 280 |
| Msa1386120 | AT5G03840.1 | 75.595 | 168 | 41 | 0 | 7 | 174 | 10 | 177 | 3.64e-96 | 276 |
| Msa1386120 | AT5G62040.1 | 63.314 | 169 | 61 | 1 | 7 | 174 | 6 | 174 | 1.33e-78 | 231 |
| Msa1386120 | AT1G65480.1 | 56.805 | 169 | 72 | 1 | 6 | 174 | 6 | 173 | 2.99e-68 | 205 |
| Msa1386120 | AT1G65480.2 | 56.805 | 169 | 72 | 1 | 6 | 174 | 50 | 217 | 5.08e-68 | 206 |
| Msa1386120 | AT4G20370.1 | 55.172 | 174 | 77 | 1 | 1 | 174 | 1 | 173 | 3.25e-64 | 195 |
| Msa1386120 | AT1G18100.1 | 53.801 | 171 | 77 | 2 | 5 | 174 | 4 | 173 | 9.33e-60 | 184 |
Find 50 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATTGTTGTACTGTTTC+TGG | 0.116568 | tig0020787:-27819 | Msa1386120:three_prime_UTR |
| AACCTGTGTATACCTATATT+TGG | 0.186581 | tig0020787:+28249 | None:intergenic |
| ATTAATTAATTATTAAATAA+AGG | 0.232630 | tig0020787:-28023 | Msa1386120:three_prime_UTR |
| TGTATACCTATATTTGGCTT+TGG | 0.348590 | tig0020787:+28255 | None:intergenic |
| ATCAATCTCAACTTTGGGTT+TGG | 0.350978 | tig0020787:+29007 | None:intergenic |
| CCACCATCAATCTCAACTTT+GGG | 0.354792 | tig0020787:+29002 | None:intergenic |
| ATCACTCTTCCAACAATTAG+TGG | 0.360921 | tig0020787:+29134 | None:intergenic |
| ATTATATGCTTTCAAGCTAT+AGG | 0.363789 | tig0020787:+28044 | None:intergenic |
| CTAGTTTGCTCTAATCTGAT+TGG | 0.365683 | tig0020787:-27948 | Msa1386120:three_prime_UTR |
| TTGAAGTAAACAGCAGCAAC+AGG | 0.376187 | tig0020787:+28117 | None:intergenic |
| TTTGCTTCACAGAATGATCT+TGG | 0.386822 | tig0020787:-28144 | Msa1386120:CDS |
| ACCACCATCAATCTCAACTT+TGG | 0.389590 | tig0020787:+29001 | None:intergenic |
| ATGACAGACCCTGATGTTCC+TGG | 0.398979 | tig0020787:-28556 | Msa1386120:CDS |
| CTAATTGTTGGAAGAGTGAT+AGG | 0.399004 | tig0020787:-29131 | Msa1386120:CDS |
| TCACTAGGGCCAGGAACATC+AGG | 0.402435 | tig0020787:+28547 | None:intergenic |
| GAGATACCAAAGCCAAATAT+AGG | 0.411899 | tig0020787:-28261 | Msa1386120:CDS |
| CACGTACGTGTGTCGCAGAA+AGG | 0.434882 | tig0020787:-27886 | Msa1386120:three_prime_UTR |
| TCTCAAGAACCACTAATTGT+TGG | 0.442613 | tig0020787:-29143 | Msa1386120:CDS |
| CAATCAGATTAGAGCAAACT+AGG | 0.446472 | tig0020787:+27949 | None:intergenic |
| TTTCACAAAAGAGTGAGAAA+AGG | 0.461583 | tig0020787:+29177 | None:intergenic |
| AATGTAGCATCTGTTGTTCC+AGG | 0.468348 | tig0020787:+28392 | None:intergenic |
| TTCACAAAAGAGTGAGAAAA+GGG | 0.475211 | tig0020787:+29178 | None:intergenic |
| AAACCCAAAGTTGAGATTGA+TGG | 0.483192 | tig0020787:-29005 | Msa1386120:CDS |
| GGAACAACAGATGCTACATT+TGG | 0.485413 | tig0020787:-28389 | Msa1386120:intron |
| ACGTACGTGTGTCGCAGAAA+GGG | 0.487311 | tig0020787:-27885 | Msa1386120:three_prime_UTR |
| TGACAGCATCACCATCTTCA+AGG | 0.487602 | tig0020787:-28188 | Msa1386120:CDS |
| TATGTATACCAGTGTATAGA+AGG | 0.492217 | tig0020787:+28968 | None:intergenic |
| CTTTCAAGCTATAGGTGCTA+TGG | 0.498189 | tig0020787:+28052 | None:intergenic |
| TCTCTTAGATAAGGATCACT+AGG | 0.515870 | tig0020787:+28532 | None:intergenic |
| AACAAGAAGCAAGTCTTCAA+TGG | 0.516428 | tig0020787:-29059 | Msa1386120:CDS |
| TGCAAGTGTTCTCTTAGATA+AGG | 0.516587 | tig0020787:+28523 | None:intergenic |
| GGTTTGGTGTTGATAGTCGA+AGG | 0.534416 | tig0020787:+29023 | None:intergenic |
| AGGATTGTGACAGATATTCC+TGG | 0.544216 | tig0020787:-28410 | Msa1386120:CDS |
| ATCTAAGAGAACACTTGCAC+TGG | 0.547868 | tig0020787:-28519 | Msa1386120:intron |
| AGATAAGGATCACTAGGGCC+AGG | 0.551174 | tig0020787:+28538 | None:intergenic |
| AAGCTATAGGTGCTATGGCT+AGG | 0.555958 | tig0020787:+28057 | None:intergenic |
| AAGGGAAAAGAAAGTTTGAG+TGG | 0.558053 | tig0020787:+29196 | None:intergenic |
| TAGCTTGATATACTGTCCAT+TGG | 0.562086 | tig0020787:-27844 | Msa1386120:three_prime_UTR |
| GTACAACAATATTTATCCAA+TGG | 0.577871 | tig0020787:+27828 | None:intergenic |
| GACAGCATCACCATCTTCAA+GGG | 0.605051 | tig0020787:-28187 | Msa1386120:CDS |
| TAGCTAGCGTCTTCTTGCAG+CGG | 0.618371 | tig0020787:+28080 | None:intergenic |
| TTGAAGTAATCCCTTGAAGA+TGG | 0.619085 | tig0020787:+28177 | None:intergenic |
| GTTTGGTGTTGATAGTCGAA+GGG | 0.622748 | tig0020787:+29024 | None:intergenic |
| CATGAGGTCCTTCTATACAC+TGG | 0.635578 | tig0020787:-28976 | Msa1386120:intron |
| AGCCAAATATAGGTATACAC+AGG | 0.646467 | tig0020787:-28251 | Msa1386120:CDS |
| CACTAGGGCCAGGAACATCA+GGG | 0.649372 | tig0020787:+28548 | None:intergenic |
| AGATTGATGGTGGTGACATG+AGG | 0.657715 | tig0020787:-28992 | Msa1386120:CDS |
| CTCTTAGATAAGGATCACTA+GGG | 0.658157 | tig0020787:+28533 | None:intergenic |
| TGAAGTAAACAGCAGCAACA+GGG | 0.675086 | tig0020787:+28118 | None:intergenic |
| CCCAAAGTTGAGATTGATGG+TGG | 0.692189 | tig0020787:-29002 | Msa1386120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTATTTTTTTTAT+AGG | + | tig0020787:28295-28314 | None:intergenic | 0.0% |
| !! | ATTAATTAATTATTAAATAA+AGG | - | tig0020787:28928-28947 | Msa1386120:intron | 0.0% |
| !!! | ATAATTTTTATTTTTTTTAT+AGG | + | tig0020787:28295-28314 | None:intergenic | 0.0% |
| !! | ATTAATTAATTATTAAATAA+AGG | - | tig0020787:28928-28947 | Msa1386120:intron | 0.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | + | tig0020787:28502-28521 | None:intergenic | 10.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | + | tig0020787:28502-28521 | None:intergenic | 10.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | + | tig0020787:28353-28372 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | - | tig0020787:28360-28379 | Msa1386120:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | - | tig0020787:28364-28383 | Msa1386120:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | + | tig0020787:28483-28502 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | - | tig0020787:28521-28540 | Msa1386120:CDS | 20.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | + | tig0020787:28353-28372 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | - | tig0020787:28360-28379 | Msa1386120:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | - | tig0020787:28364-28383 | Msa1386120:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | + | tig0020787:28483-28502 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | - | tig0020787:28521-28540 | Msa1386120:CDS | 20.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | + | tig0020787:28192-28211 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | + | tig0020787:28266-28285 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | - | tig0020787:28577-28596 | Msa1386120:intron | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | + | tig0020787:28910-28929 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | + | tig0020787:29126-29145 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | - | tig0020787:29132-29151 | Msa1386120:CDS | 25.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | + | tig0020787:28192-28211 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | + | tig0020787:28266-28285 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | - | tig0020787:28577-28596 | Msa1386120:intron | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | + | tig0020787:28910-28929 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | + | tig0020787:29126-29145 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | - | tig0020787:29132-29151 | Msa1386120:CDS | 25.0% |
| TTCACAAAAGAGTGAGAAAA+GGG | + | tig0020787:27776-27795 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | + | tig0020787:27777-27796 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | - | tig0020787:27777-27796 | Msa1386120:three_prime_UTR | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | + | tig0020787:27986-28005 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | + | tig0020787:28117-28136 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | - | tig0020787:28133-28152 | Msa1386120:CDS | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | - | tig0020787:28134-28153 | Msa1386120:CDS | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | + | tig0020787:28267-28286 | None:intergenic | 30.0% |
| TTATTGTGTGTGTGCTTTAT+TGG | - | tig0020787:28311-28330 | Msa1386120:intron | 30.0% | |
| ! | TATACATATTTGGTTGGTGT+AGG | - | tig0020787:28370-28389 | Msa1386120:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | + | tig0020787:28699-28718 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | + | tig0020787:28705-28724 | None:intergenic | 30.0% | |
| TTCACAAAAGAGTGAGAAAA+GGG | + | tig0020787:27776-27795 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | + | tig0020787:27777-27796 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | - | tig0020787:27777-27796 | Msa1386120:three_prime_UTR | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | + | tig0020787:27986-28005 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | + | tig0020787:28117-28136 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | - | tig0020787:28133-28152 | Msa1386120:CDS | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | - | tig0020787:28134-28153 | Msa1386120:CDS | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | + | tig0020787:28267-28286 | None:intergenic | 30.0% |
| TTATTGTGTGTGTGCTTTAT+TGG | - | tig0020787:28311-28330 | Msa1386120:intron | 30.0% | |
| ! | TATACATATTTGGTTGGTGT+AGG | - | tig0020787:28370-28389 | Msa1386120:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | + | tig0020787:28699-28718 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | + | tig0020787:28705-28724 | None:intergenic | 30.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | + | tig0020787:27758-27777 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | - | tig0020787:27808-27827 | Msa1386120:three_prime_UTR | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | + | tig0020787:27820-27839 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | - | tig0020787:27820-27839 | Msa1386120:three_prime_UTR | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | + | tig0020787:27867-27886 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | - | tig0020787:27892-27911 | Msa1386120:three_prime_UTR | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | + | tig0020787:27947-27966 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | - | tig0020787:27946-27965 | Msa1386120:three_prime_UTR | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | - | tig0020787:28109-28128 | Msa1386120:CDS | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | + | tig0020787:28262-28281 | None:intergenic | 35.0% |
| CTCTTAGATAAGGATCACTA+GGG | + | tig0020787:28421-28440 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | + | tig0020787:28422-28441 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | + | tig0020787:28431-28450 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | - | tig0020787:28648-28667 | Msa1386120:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | - | tig0020787:28649-28668 | Msa1386120:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | - | tig0020787:28690-28709 | Msa1386120:intron | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | - | tig0020787:28700-28719 | Msa1386120:intron | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | + | tig0020787:28777-28796 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | - | tig0020787:28807-28826 | Msa1386120:intron | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | + | tig0020787:29005-29024 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | - | tig0020787:29003-29022 | Msa1386120:CDS | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | - | tig0020787:29107-29126 | Msa1386120:CDS | 35.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | + | tig0020787:27758-27777 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | - | tig0020787:27808-27827 | Msa1386120:three_prime_UTR | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | + | tig0020787:27820-27839 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | - | tig0020787:27820-27839 | Msa1386120:three_prime_UTR | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | + | tig0020787:27867-27886 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | - | tig0020787:27892-27911 | Msa1386120:three_prime_UTR | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | + | tig0020787:27947-27966 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | - | tig0020787:27946-27965 | Msa1386120:three_prime_UTR | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | - | tig0020787:28109-28128 | Msa1386120:CDS | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | + | tig0020787:28262-28281 | None:intergenic | 35.0% |
| CTCTTAGATAAGGATCACTA+GGG | + | tig0020787:28421-28440 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | + | tig0020787:28422-28441 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | + | tig0020787:28431-28450 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | - | tig0020787:28648-28667 | Msa1386120:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | - | tig0020787:28649-28668 | Msa1386120:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | - | tig0020787:28690-28709 | Msa1386120:intron | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | - | tig0020787:28700-28719 | Msa1386120:intron | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | + | tig0020787:28777-28796 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | - | tig0020787:28807-28826 | Msa1386120:intron | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | + | tig0020787:29005-29024 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | - | tig0020787:29003-29022 | Msa1386120:CDS | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | - | tig0020787:29107-29126 | Msa1386120:CDS | 35.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | + | tig0020787:27860-27879 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | + | tig0020787:27866-27885 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | + | tig0020787:27868-27887 | None:intergenic | 40.0% |
| TAGTCGAAGGGAAAAACTCA+TGG | + | tig0020787:27918-27937 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTCGAA+GGG | + | tig0020787:27930-27949 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | + | tig0020787:27952-27971 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | + | tig0020787:27953-27972 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | + | tig0020787:28105-28124 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | + | tig0020787:28263-28282 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | - | tig0020787:28316-28335 | Msa1386120:intron | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | - | tig0020787:28432-28451 | Msa1386120:intron | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | - | tig0020787:28541-28560 | Msa1386120:CDS | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | + | tig0020787:28562-28581 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | - | tig0020787:28562-28581 | Msa1386120:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | - | tig0020787:28566-28585 | Msa1386120:intron | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | + | tig0020787:28836-28855 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | + | tig0020787:28837-28856 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | + | tig0020787:28902-28921 | None:intergenic | 40.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | + | tig0020787:27860-27879 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | + | tig0020787:27866-27885 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | + | tig0020787:27868-27887 | None:intergenic | 40.0% |
| TAGTCGAAGGGAAAAACTCA+TGG | + | tig0020787:27918-27937 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTCGAA+GGG | + | tig0020787:27930-27949 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | + | tig0020787:27952-27971 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | + | tig0020787:27953-27972 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | + | tig0020787:28105-28124 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | + | tig0020787:28263-28282 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | - | tig0020787:28316-28335 | Msa1386120:intron | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | - | tig0020787:28432-28451 | Msa1386120:intron | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | - | tig0020787:28541-28560 | Msa1386120:CDS | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | + | tig0020787:28562-28581 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | - | tig0020787:28562-28581 | Msa1386120:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | - | tig0020787:28566-28585 | Msa1386120:intron | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | + | tig0020787:28836-28855 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | + | tig0020787:28837-28856 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | + | tig0020787:28902-28921 | None:intergenic | 40.0% | |
| !! | GGTTTGGTGTTGATAGTCGA+AGG | + | tig0020787:27931-27950 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | - | tig0020787:27949-27968 | Msa1386120:three_prime_UTR | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | - | tig0020787:27959-27978 | Msa1386120:three_prime_UTR | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | - | tig0020787:27975-27994 | Msa1386120:three_prime_UTR | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | + | tig0020787:28104-28123 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | - | tig0020787:28763-28782 | Msa1386120:intron | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | - | tig0020787:28764-28783 | Msa1386120:intron | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | + | tig0020787:28897-28916 | None:intergenic | 45.0% |
| !! | GGTTTGGTGTTGATAGTCGA+AGG | + | tig0020787:27931-27950 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | - | tig0020787:27949-27968 | Msa1386120:three_prime_UTR | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | - | tig0020787:27959-27978 | Msa1386120:three_prime_UTR | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | - | tig0020787:27975-27994 | Msa1386120:three_prime_UTR | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | + | tig0020787:28104-28123 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | - | tig0020787:28763-28782 | Msa1386120:intron | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | - | tig0020787:28764-28783 | Msa1386120:intron | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | + | tig0020787:28897-28916 | None:intergenic | 45.0% |
| ATTACTCGGCTATTCCCACG+GGG | + | tig0020787:28103-28122 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | - | tig0020787:28395-28414 | Msa1386120:CDS | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | + | tig0020787:28416-28435 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | + | tig0020787:28874-28893 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | - | tig0020787:29066-29085 | Msa1386120:CDS | 50.0% | |
| ATTACTCGGCTATTCCCACG+GGG | + | tig0020787:28103-28122 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | - | tig0020787:28395-28414 | Msa1386120:CDS | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | + | tig0020787:28416-28435 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | + | tig0020787:28874-28893 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | - | tig0020787:29066-29085 | Msa1386120:CDS | 50.0% | |
| CACTAGGGCCAGGAACATCA+GGG | + | tig0020787:28406-28425 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | + | tig0020787:28407-28426 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | - | tig0020787:29065-29084 | Msa1386120:CDS | 55.0% | |
| CACTAGGGCCAGGAACATCA+GGG | + | tig0020787:28406-28425 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | + | tig0020787:28407-28426 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | - | tig0020787:29065-29084 | Msa1386120:CDS | 55.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | - | tig0020787:28085-28104 | Msa1386120:CDS | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | - | tig0020787:28086-28105 | Msa1386120:CDS | 60.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | - | tig0020787:28085-28104 | Msa1386120:CDS | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | - | tig0020787:28086-28105 | Msa1386120:CDS | 60.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | + | tig0020787:28098-28117 | None:intergenic | 65.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | + | tig0020787:28098-28117 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020787 | gene | 27734 | 29239 | 27734 | ID=Msa1386120;Name=Msa1386120 |
| tig0020787 | mRNA | 27734 | 29239 | 27734 | ID=Msa1386120-mRNA-1;Parent=Msa1386120;Name=Msa1386120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|1|1|1|1|1|4|349|174 |
| tig0020787 | exon | 27734 | 28303 | 27734 | ID=Msa1386120-mRNA-1:exon:10040;Parent=Msa1386120-mRNA-1 |
| tig0020787 | exon | 28390 | 28430 | 28390 | ID=Msa1386120-mRNA-1:exon:10039;Parent=Msa1386120-mRNA-1 |
| tig0020787 | exon | 28520 | 28581 | 28520 | ID=Msa1386120-mRNA-1:exon:10038;Parent=Msa1386120-mRNA-1 |
| tig0020787 | exon | 28977 | 29239 | 28977 | ID=Msa1386120-mRNA-1:exon:10037;Parent=Msa1386120-mRNA-1 |
| tig0020787 | five_prime_UTR | 29178 | 29239 | 29178 | ID=Msa1386120-mRNA-1:five_prime_utr;Parent=Msa1386120-mRNA-1 |
| tig0020787 | CDS | 28977 | 29177 | 28977 | ID=Msa1386120-mRNA-1:cds;Parent=Msa1386120-mRNA-1 |
| tig0020787 | CDS | 28520 | 28581 | 28520 | ID=Msa1386120-mRNA-1:cds;Parent=Msa1386120-mRNA-1 |
| tig0020787 | CDS | 28390 | 28430 | 28390 | ID=Msa1386120-mRNA-1:cds;Parent=Msa1386120-mRNA-1 |
| tig0020787 | CDS | 28083 | 28303 | 28083 | ID=Msa1386120-mRNA-1:cds;Parent=Msa1386120-mRNA-1 |
| tig0020787 | three_prime_UTR | 27734 | 28082 | 27734 | ID=Msa1386120-mRNA-1:three_prime_utr;Parent=Msa1386120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
