AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140270 MtrunA17_Chr3g0134271 96.894 322 10 0 1 322 1 322 0.0 642
Msa0140270 MtrunA17_Chr1g0198911 87.267 322 39 1 1 322 1 320 0.0 580
Msa0140270 MtrunA17_Chr1g0152931 86.769 325 40 2 1 322 1 325 0.0 576
Msa0140270 MtrunA17_Chr4g0061721 59.006 322 124 2 3 321 2 318 7.34e-131 375
Msa0140270 MtrunA17_Chr4g0061731 58.075 322 128 3 3 321 2 319 3.85e-128 369
Msa0140270 MtrunA17_Chr8g0349621 28.990 307 171 7 6 277 23 317 1.93e-25 105
Msa0140270 MtrunA17_Chr3g0079001 28.571 252 157 6 67 297 77 326 1.06e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140270 AT3G16150.1 84.308 325 48 1 1 322 1 325 0.0 566
Msa0140270 AT5G08100.1 58.025 324 121 3 1 321 1 312 5.64e-128 368
Msa0140270 AT5G08100.2 57.377 244 90 2 80 321 1 232 3.96e-94 279
Msa0140270 AT4G00590.1 27.019 322 174 8 6 282 15 320 2.61e-20 91.3
Msa0140270 AT5G61540.1 28.947 266 150 9 67 300 80 338 1.01e-17 83.2
Msa0140270 AT4G00590.2 26.821 302 185 7 6 282 15 305 1.29e-16 80.1
Msa0140270 AT5G61540.3 29.167 240 131 9 93 300 4 236 6.27e-15 73.9
Msa0140270 AT5G61540.2 29.167 240 131 9 93 300 4 236 6.27e-15 73.9

Find 91 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCATGGAGGTTGGAATT+TGG 0.172718 1_3:-74483450 Msa0140270:CDS
GTTCATGGAGGTTGGAATTT+GGG 0.266618 1_3:-74483449 Msa0140270:CDS
TCAATTGTAATGGAATGTTT+AGG 0.266625 1_3:-74483492 Msa0140270:CDS
TCTTATTGCTGTGTCTAATA+AGG 0.277779 1_3:-74483533 Msa0140270:CDS
CAATTGTAATGGAATGTTTA+GGG 0.287602 1_3:-74483491 Msa0140270:CDS
AATAAGGGTGAAGTGGCTTA+TGG 0.294879 1_3:-74483517 Msa0140270:CDS
CGTCTTGATGAAGGGTTTGC+TGG 0.320904 1_3:-74483556 Msa0140270:CDS
GGTTGGGCTATTGCTGTTCA+TGG 0.339677 1_3:-74484807 Msa0140270:CDS
TGTGCTGCTGCAACCTCAAC+TGG 0.368919 1_3:-74483781 Msa0140270:CDS
TGACGGTGTGTTGGAAGATT+AGG 0.377061 1_3:+74484768 None:intergenic
AGAAGATGTGGTGCTGTATC+TGG 0.390803 1_3:-74484323 Msa0140270:CDS
TTTCAGCATACCAACATTAT+CGG 0.395803 1_3:+74484067 None:intergenic
AGGGGATGTGCAACTGAGAA+TGG 0.403815 1_3:-74483472 Msa0140270:CDS
ATAAGGGTGAAGTGGCTTAT+GGG 0.407004 1_3:-74483516 Msa0140270:CDS
ATTGCTGTTCATGGCGGCGC+TGG 0.414973 1_3:-74484798 Msa0140270:CDS
AGCAAAAGGAACGGTGGAAA+TGG 0.416209 1_3:-74484372 Msa0140270:CDS
ACATTCGGTAAGAAGCTGTT+TGG 0.418583 1_3:+74484737 None:intergenic
GCTTATGGGTTCAATTGTAA+TGG 0.420402 1_3:-74483502 Msa0140270:CDS
AAAGGAAGCTAATACAATAC+TGG 0.421495 1_3:-74484039 Msa0140270:intron
CTTACCGAATGTCTCAATCT+TGG 0.425909 1_3:-74484726 Msa0140270:CDS
CATTCTTACCTCGCCTTCTC+CGG 0.431764 1_3:-74484242 Msa0140270:CDS
CTTATTGCTGTGTCTAATAA+GGG 0.432612 1_3:-74483532 Msa0140270:CDS
ACAAGACGAGCAAGAGAGAT+TGG 0.433669 1_3:+74484281 None:intergenic
AACAAAATGAGTGGTCGAAT+TGG 0.448923 1_3:-74483748 Msa0140270:CDS
TTCAGCATACCAACATTATC+GGG 0.458771 1_3:+74484068 None:intergenic
GGATCTGCTCTGACAGCAAA+AGG 0.463031 1_3:-74484386 Msa0140270:CDS
ATTAAGCATCGTCTTGATGA+AGG 0.463221 1_3:-74483565 Msa0140270:CDS
AGAAGAATTTGCTAGGGAAC+AGG 0.465537 1_3:-74484216 Msa0140270:intron
GACGTCGAGTGCGGAAGCAT+TGG 0.472505 1_3:+74484686 None:intergenic
ATTGGTGATTCACCTCTCAT+AGG 0.473172 1_3:-74483730 Msa0140270:CDS
TGCAACTGAGAATGGGTTCA+TGG 0.477091 1_3:-74483464 Msa0140270:CDS
ACCACACATCCGACGGTCTC+CGG 0.480495 1_3:+74483823 None:intergenic
TAATCTTCCAACACACCGTC+AGG 0.481716 1_3:-74484766 Msa0140270:CDS
CTCTCTTGCTCGTCTTGTCA+TGG 0.483008 1_3:-74484276 Msa0140270:CDS
ACGTGAAGTGGCTGCAGTTA+TGG 0.491646 1_3:-74483629 Msa0140270:CDS
GTTCATCAGCCCTCCAGTTG+AGG 0.494907 1_3:+74483768 None:intergenic
AAATTCTTCTGCACCGGAGA+AGG 0.500532 1_3:+74484229 None:intergenic
GAGAATGGGTTCATGGAGGT+TGG 0.502391 1_3:-74483457 Msa0140270:CDS
GATTCACCTCTCATAGGTGC+TGG 0.502766 1_3:-74483724 Msa0140270:CDS
GATAGTCCAGTGAAAATGAA+TGG 0.507847 1_3:-74483868 Msa0140270:CDS
CCTAGCAAATTCTTCTGCAC+CGG 0.509592 1_3:+74484223 None:intergenic
GCTTCTTCCTGACGGTGTGT+TGG 0.511337 1_3:+74484759 None:intergenic
GGGGATGTGCAACTGAGAAT+GGG 0.515436 1_3:-74483471 Msa0140270:CDS
GGAAATGGAGGCTAGTATCA+TGG 0.537266 1_3:-74484357 Msa0140270:CDS
GATACCAAGATTGAGACATT+CGG 0.538052 1_3:+74484722 None:intergenic
CCGGTGCAGAAGAATTTGCT+AGG 0.539891 1_3:-74484223 Msa0140270:CDS
GACCGTCGGATGTGTGGTGG+TGG 0.541481 1_3:-74483818 Msa0140270:CDS
GTTATGGAGTACAAAGGCTA+TGG 0.546040 1_3:-74483613 Msa0140270:CDS
GTGTGTGGAGTTTCATGCAC+TGG 0.546331 1_3:-74483685 Msa0140270:CDS
CTGCTGCAACCTCAACTGGA+GGG 0.550431 1_3:-74483777 Msa0140270:CDS
GCTGTTTGGCTTCTTCCTGA+CGG 0.552502 1_3:+74484751 None:intergenic
TGGCACTCTTGCACGTGAAG+TGG 0.556232 1_3:-74483641 Msa0140270:CDS
TTCATCACTCCCGATAATGT+TGG 0.557667 1_3:-74484077 Msa0140270:CDS
AATTGTAATGGAATGTTTAG+GGG 0.558475 1_3:-74483490 Msa0140270:CDS
GAGAAGGCGAGGTAAGAATG+AGG 0.562126 1_3:+74484245 None:intergenic
GTTTGATTATCGAATTCCAA+CGG 0.581762 1_3:-74483908 Msa0140270:CDS
GCCGGAGACCGTCGGATGTG+TGG 0.582295 1_3:-74483824 Msa0140270:CDS
GAAGGTGAAGCTATCATTCG+TGG 0.583136 1_3:-74483661 Msa0140270:CDS
TGTTCATGGCGGCGCTGGTG+TGG 0.585081 1_3:-74484793 Msa0140270:CDS
GCCGATGAGCATTTACGCGC+CGG 0.592527 1_3:-74483842 Msa0140270:CDS
AGAAGGCGAGGTAAGAATGA+GGG 0.593655 1_3:+74484246 None:intergenic
CCACGGCCAGAATTGAAAAG+TGG 0.595287 1_3:+74484407 None:intergenic
CTATGGACTTCAACAAGCAG+TGG 0.595577 1_3:-74483596 Msa0140270:CDS
TTAAGCATCGTCTTGATGAA+GGG 0.596066 1_3:-74483564 Msa0140270:CDS
TTGCTGTCAGAGCAGATCCA+CGG 0.605965 1_3:+74484390 None:intergenic
GCTGCTGCAACCTCAACTGG+AGG 0.606206 1_3:-74483778 Msa0140270:CDS
TGCTCTGACAGCAAAAGGAA+CGG 0.607232 1_3:-74484381 Msa0140270:CDS
GGAGTTTCATGCACTGGTGA+AGG 0.610329 1_3:-74483679 Msa0140270:CDS
TTTCTAGGGCGTGGAGACTG+AGG 0.612061 1_3:-74484111 Msa0140270:intron
GTCCACCACCACACATCCGA+CGG 0.619811 1_3:+74483816 None:intergenic
TGTGTCTAATAAGGGTGAAG+TGG 0.621047 1_3:-74483524 Msa0140270:CDS
AAAAGGAACGGTGGAAATGG+AGG 0.622339 1_3:-74484369 Msa0140270:CDS
CGGTGCAGAAGAATTTGCTA+GGG 0.622722 1_3:-74484222 Msa0140270:CDS
GAAGGCGAGGTAAGAATGAG+GGG 0.630197 1_3:+74484247 None:intergenic
ATTTACGCGCCGGAGACCGT+CGG 0.633728 1_3:-74483832 Msa0140270:CDS
ATGGAGGCTAGTATCATGGA+TGG 0.635651 1_3:-74484353 Msa0140270:CDS
TCCGGCGCGTAAATGCTCAT+CGG 0.640097 1_3:+74483841 None:intergenic
AAGTTCGACGACGTCGAGTG+CGG 0.645430 1_3:+74484677 None:intergenic
CGAGTGCGGAAGCATTGGAT+CGG 0.648150 1_3:+74484691 None:intergenic
TAAGTTCCAGCACCTATGAG+AGG 0.650295 1_3:+74483718 None:intergenic
CTTCTGCACCGGAGAAGGCG+AGG 0.656386 1_3:+74484234 None:intergenic
GGAGACCGTCGGATGTGTGG+TGG 0.674288 1_3:-74483821 Msa0140270:CDS
GATGGTAACAAGAGAAGATG+TGG 0.682088 1_3:-74484335 Msa0140270:CDS
TGGTATGCTGAAACTCGCAA+AGG 0.682548 1_3:-74484057 Msa0140270:CDS
TGGGCTATTGCTGTTCATGG+CGG 0.684758 1_3:-74484804 Msa0140270:CDS
ACTTATGCATGTGATGTGTG+TGG 0.685580 1_3:-74483700 Msa0140270:CDS
GCTGCAGTTATGGAGTACAA+AGG 0.689411 1_3:-74483619 Msa0140270:CDS
TCTGACAGCAAAAGGAACGG+TGG 0.711989 1_3:-74484378 Msa0140270:CDS
TGTGTGGTGGTGGACAGTCA+AGG 0.729603 1_3:-74483808 Msa0140270:CDS
GGGCTGATGAACAAAATGAG+TGG 0.736737 1_3:-74483757 Msa0140270:CDS
AACTGAGAATGGGTTCATGG+AGG 0.788867 1_3:-74483461 Msa0140270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATATTATTGTCATTA+TGG + chr1_3:74483737-74483756 None:intergenic 10.0%
!! AATATTTATAGATCAAAAAT+TGG + chr1_3:74484094-74484113 None:intergenic 10.0%
!! AAATTATATTATTGTCATTA+TGG + chr1_3:74483737-74483756 None:intergenic 10.0%
!! AATATTTATAGATCAAAAAT+TGG + chr1_3:74484094-74484113 None:intergenic 10.0%
!! GATTATGAATGATATAAATT+AGG + chr1_3:74483651-74483670 None:intergenic 15.0%
!! ATTTATATCATTCATAATCA+TGG - chr1_3:74483652-74483671 Msa0140270:CDS 15.0%
!! TTTATATCATTCATAATCAT+GGG - chr1_3:74483653-74483672 Msa0140270:CDS 15.0%
!!! GTTTTTAATCAAAAGATATT+TGG - chr1_3:74484115-74484134 Msa0140270:intron 15.0%
!! GATTATGAATGATATAAATT+AGG + chr1_3:74483651-74483670 None:intergenic 15.0%
!! ATTTATATCATTCATAATCA+TGG - chr1_3:74483652-74483671 Msa0140270:CDS 15.0%
!! TTTATATCATTCATAATCAT+GGG - chr1_3:74483653-74483672 Msa0140270:CDS 15.0%
!!! GTTTTTAATCAAAAGATATT+TGG - chr1_3:74484115-74484134 Msa0140270:intron 15.0%
!! AAATTAGGTTAGGTTTATTA+CGG + chr1_3:74483636-74483655 None:intergenic 20.0%
!! TGAATGATATAAATTAGGTT+AGG + chr1_3:74483646-74483665 None:intergenic 20.0%
!!! TTTCTGTTTTTGTTGATTTT+AGG - chr1_3:74483790-74483809 Msa0140270:CDS 20.0%
!!! TTCTGTTTTTGTTGATTTTA+GGG - chr1_3:74483791-74483810 Msa0140270:CDS 20.0%
!! TTATTAATGAATGTGTTTGA+TGG - chr1_3:74484315-74484334 Msa0140270:CDS 20.0%
!! AAATTAGGTTAGGTTTATTA+CGG + chr1_3:74483636-74483655 None:intergenic 20.0%
!! TGAATGATATAAATTAGGTT+AGG + chr1_3:74483646-74483665 None:intergenic 20.0%
!!! TTTCTGTTTTTGTTGATTTT+AGG - chr1_3:74483790-74483809 Msa0140270:CDS 20.0%
!!! TTCTGTTTTTGTTGATTTTA+GGG - chr1_3:74483791-74483810 Msa0140270:CDS 20.0%
!! TTATTAATGAATGTGTTTGA+TGG - chr1_3:74484315-74484334 Msa0140270:CDS 20.0%
! AACTATAGATTCGAAAATAC+CGG + chr1_3:74483766-74483785 None:intergenic 25.0%
!!! TTTAGGGTTCTTTTTTTGAT+AGG - chr1_3:74483807-74483826 Msa0140270:CDS 25.0%
!!! TATTTGGTCATGTTTTTTCT+AGG - chr1_3:74484131-74484150 Msa0140270:intron 25.0%
!!! ATTTGGTCATGTTTTTTCTA+GGG - chr1_3:74484132-74484151 Msa0140270:intron 25.0%
! TCACTTGTGTAATTAAAATG+TGG - chr1_3:74484277-74484296 Msa0140270:CDS 25.0%
!! TCAATTGTAATGGAATGTTT+AGG - chr1_3:74484765-74484784 Msa0140270:CDS 25.0%
!! CAATTGTAATGGAATGTTTA+GGG - chr1_3:74484766-74484785 Msa0140270:CDS 25.0%
!! AATTGTAATGGAATGTTTAG+GGG - chr1_3:74484767-74484786 Msa0140270:CDS 25.0%
! AACTATAGATTCGAAAATAC+CGG + chr1_3:74483766-74483785 None:intergenic 25.0%
!!! TTTAGGGTTCTTTTTTTGAT+AGG - chr1_3:74483807-74483826 Msa0140270:CDS 25.0%
!!! TATTTGGTCATGTTTTTTCT+AGG - chr1_3:74484131-74484150 Msa0140270:intron 25.0%
!!! ATTTGGTCATGTTTTTTCTA+GGG - chr1_3:74484132-74484151 Msa0140270:intron 25.0%
! TCACTTGTGTAATTAAAATG+TGG - chr1_3:74484277-74484296 Msa0140270:CDS 25.0%
!! TCAATTGTAATGGAATGTTT+AGG - chr1_3:74484765-74484784 Msa0140270:CDS 25.0%
!! CAATTGTAATGGAATGTTTA+GGG - chr1_3:74484766-74484785 Msa0140270:CDS 25.0%
!! AATTGTAATGGAATGTTTAG+GGG - chr1_3:74484767-74484786 Msa0140270:CDS 25.0%
TCATTCATAATCATGGGAAA+AGG - chr1_3:74483659-74483678 Msa0140270:CDS 30.0%
! AAGAGAGATTGGATTTTTCA+CGG + chr1_3:74483968-74483987 None:intergenic 30.0%
TTTCAGCATACCAACATTAT+CGG + chr1_3:74484193-74484212 None:intergenic 30.0%
AAAGGAAGCTAATACAATAC+TGG - chr1_3:74484218-74484237 Msa0140270:CDS 30.0%
TAATGAATGTGTTTGATGGA+CGG - chr1_3:74484319-74484338 Msa0140270:CDS 30.0%
GTTTGATTATCGAATTCCAA+CGG - chr1_3:74484349-74484368 Msa0140270:CDS 30.0%
TCTTATTGCTGTGTCTAATA+AGG - chr1_3:74484724-74484743 Msa0140270:CDS 30.0%
CTTATTGCTGTGTCTAATAA+GGG - chr1_3:74484725-74484744 Msa0140270:CDS 30.0%
TCATTCATAATCATGGGAAA+AGG - chr1_3:74483659-74483678 Msa0140270:CDS 30.0%
! AAGAGAGATTGGATTTTTCA+CGG + chr1_3:74483968-74483987 None:intergenic 30.0%
TTTCAGCATACCAACATTAT+CGG + chr1_3:74484193-74484212 None:intergenic 30.0%
AAAGGAAGCTAATACAATAC+TGG - chr1_3:74484218-74484237 Msa0140270:CDS 30.0%
TAATGAATGTGTTTGATGGA+CGG - chr1_3:74484319-74484338 Msa0140270:CDS 30.0%
GTTTGATTATCGAATTCCAA+CGG - chr1_3:74484349-74484368 Msa0140270:CDS 30.0%
TCTTATTGCTGTGTCTAATA+AGG - chr1_3:74484724-74484743 Msa0140270:CDS 30.0%
CTTATTGCTGTGTCTAATAA+GGG - chr1_3:74484725-74484744 Msa0140270:CDS 30.0%
GATACCAAGATTGAGACATT+CGG + chr1_3:74483538-74483557 None:intergenic 35.0%
GTTTATTACGGAAGAGACAT+GGG + chr1_3:74483624-74483643 None:intergenic 35.0%
!! ACAGATCCACTTTTCAATTC+TGG - chr1_3:74483844-74483863 Msa0140270:CDS 35.0%
TTCAGCATACCAACATTATC+GGG + chr1_3:74484192-74484211 None:intergenic 35.0%
GATAGTCCAGTGAAAATGAA+TGG - chr1_3:74484389-74484408 Msa0140270:CDS 35.0%
AACAAAATGAGTGGTCGAAT+TGG - chr1_3:74484509-74484528 Msa0140270:intron 35.0%
! ATTAAGCATCGTCTTGATGA+AGG - chr1_3:74484692-74484711 Msa0140270:CDS 35.0%
! TTAAGCATCGTCTTGATGAA+GGG - chr1_3:74484693-74484712 Msa0140270:CDS 35.0%
GCTTATGGGTTCAATTGTAA+TGG - chr1_3:74484755-74484774 Msa0140270:CDS 35.0%
GATACCAAGATTGAGACATT+CGG + chr1_3:74483538-74483557 None:intergenic 35.0%
GTTTATTACGGAAGAGACAT+GGG + chr1_3:74483624-74483643 None:intergenic 35.0%
!! ACAGATCCACTTTTCAATTC+TGG - chr1_3:74483844-74483863 Msa0140270:CDS 35.0%
TTCAGCATACCAACATTATC+GGG + chr1_3:74484192-74484211 None:intergenic 35.0%
GATAGTCCAGTGAAAATGAA+TGG - chr1_3:74484389-74484408 Msa0140270:CDS 35.0%
AACAAAATGAGTGGTCGAAT+TGG - chr1_3:74484509-74484528 Msa0140270:intron 35.0%
! ATTAAGCATCGTCTTGATGA+AGG - chr1_3:74484692-74484711 Msa0140270:CDS 35.0%
! TTAAGCATCGTCTTGATGAA+GGG - chr1_3:74484693-74484712 Msa0140270:CDS 35.0%
GCTTATGGGTTCAATTGTAA+TGG - chr1_3:74484755-74484774 Msa0140270:CDS 35.0%
ACATTCGGTAAGAAGCTGTT+TGG + chr1_3:74483523-74483542 None:intergenic 40.0%
CTTACCGAATGTCTCAATCT+TGG - chr1_3:74483531-74483550 Msa0140270:CDS 40.0%
GGTTTATTACGGAAGAGACA+TGG + chr1_3:74483625-74483644 None:intergenic 40.0%
GATGGTAACAAGAGAAGATG+TGG - chr1_3:74483922-74483941 Msa0140270:intron 40.0%
! AGAGATTGGATTTTTCACGG+TGG + chr1_3:74483965-74483984 None:intergenic 40.0%
!! AGAAGAATTTGCTAGGGAAC+AGG - chr1_3:74484041-74484060 Msa0140270:CDS 40.0%
TTCATCACTCCCGATAATGT+TGG - chr1_3:74484180-74484199 Msa0140270:intron 40.0%
ATTCCAACGGAAAAATGTGC+TGG - chr1_3:74484362-74484381 Msa0140270:CDS 40.0%
! ATTGGTGATTCACCTCTCAT+AGG - chr1_3:74484527-74484546 Msa0140270:intron 40.0%
ACTTATGCATGTGATGTGTG+TGG - chr1_3:74484557-74484576 Msa0140270:intron 40.0%
GTTATGGAGTACAAAGGCTA+TGG - chr1_3:74484644-74484663 Msa0140270:intron 40.0%
TGTGTCTAATAAGGGTGAAG+TGG - chr1_3:74484733-74484752 Msa0140270:CDS 40.0%
AATAAGGGTGAAGTGGCTTA+TGG - chr1_3:74484740-74484759 Msa0140270:CDS 40.0%
ATAAGGGTGAAGTGGCTTAT+GGG - chr1_3:74484741-74484760 Msa0140270:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG - chr1_3:74484808-74484827 Msa0140270:CDS 40.0%
ACATTCGGTAAGAAGCTGTT+TGG + chr1_3:74483523-74483542 None:intergenic 40.0%
CTTACCGAATGTCTCAATCT+TGG - chr1_3:74483531-74483550 Msa0140270:CDS 40.0%
GGTTTATTACGGAAGAGACA+TGG + chr1_3:74483625-74483644 None:intergenic 40.0%
GATGGTAACAAGAGAAGATG+TGG - chr1_3:74483922-74483941 Msa0140270:intron 40.0%
! AGAGATTGGATTTTTCACGG+TGG + chr1_3:74483965-74483984 None:intergenic 40.0%
!! AGAAGAATTTGCTAGGGAAC+AGG - chr1_3:74484041-74484060 Msa0140270:CDS 40.0%
TTCATCACTCCCGATAATGT+TGG - chr1_3:74484180-74484199 Msa0140270:intron 40.0%
ATTCCAACGGAAAAATGTGC+TGG - chr1_3:74484362-74484381 Msa0140270:CDS 40.0%
! ATTGGTGATTCACCTCTCAT+AGG - chr1_3:74484527-74484546 Msa0140270:intron 40.0%
ACTTATGCATGTGATGTGTG+TGG - chr1_3:74484557-74484576 Msa0140270:intron 40.0%
GTTATGGAGTACAAAGGCTA+TGG - chr1_3:74484644-74484663 Msa0140270:intron 40.0%
TGTGTCTAATAAGGGTGAAG+TGG - chr1_3:74484733-74484752 Msa0140270:CDS 40.0%
AATAAGGGTGAAGTGGCTTA+TGG - chr1_3:74484740-74484759 Msa0140270:CDS 40.0%
ATAAGGGTGAAGTGGCTTAT+GGG - chr1_3:74484741-74484760 Msa0140270:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG - chr1_3:74484808-74484827 Msa0140270:CDS 40.0%
TGACGGTGTGTTGGAAGATT+AGG + chr1_3:74483492-74483511 None:intergenic 45.0%
TAATCTTCCAACACACCGTC+AGG - chr1_3:74483491-74483510 Msa0140270:CDS 45.0%
TGCTCTGACAGCAAAAGGAA+CGG - chr1_3:74483876-74483895 Msa0140270:CDS 45.0%
AGCAAAAGGAACGGTGGAAA+TGG - chr1_3:74483885-74483904 Msa0140270:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG - chr1_3:74483888-74483907 Msa0140270:CDS 45.0%
GGAAATGGAGGCTAGTATCA+TGG - chr1_3:74483900-74483919 Msa0140270:CDS 45.0%
ATGGAGGCTAGTATCATGGA+TGG - chr1_3:74483904-74483923 Msa0140270:CDS 45.0%
!! AGAAGATGTGGTGCTGTATC+TGG - chr1_3:74483934-74483953 Msa0140270:intron 45.0%
ACAAGACGAGCAAGAGAGAT+TGG + chr1_3:74483979-74483998 None:intergenic 45.0%
AGAAGGCGAGGTAAGAATGA+GGG + chr1_3:74484014-74484033 None:intergenic 45.0%
AAATTCTTCTGCACCGGAGA+AGG + chr1_3:74484031-74484050 None:intergenic 45.0%
CCTAGCAAATTCTTCTGCAC+CGG + chr1_3:74484037-74484056 None:intergenic 45.0%
!! CGGTGCAGAAGAATTTGCTA+GGG - chr1_3:74484035-74484054 Msa0140270:intron 45.0%
!!! GTCATGTTTTTTCTAGGGCG+TGG - chr1_3:74484137-74484156 Msa0140270:intron 45.0%
TGGTATGCTGAAACTCGCAA+AGG - chr1_3:74484200-74484219 Msa0140270:intron 45.0%
! TGAATGTGTTTGATGGACGG+TGG - chr1_3:74484322-74484341 Msa0140270:CDS 45.0%
! GTTCCAGCACATTTTTCCGT+TGG + chr1_3:74484368-74484387 None:intergenic 45.0%
! GGCAGACCATTCATTTTCAC+TGG + chr1_3:74484398-74484417 None:intergenic 45.0%
GGGCTGATGAACAAAATGAG+TGG - chr1_3:74484500-74484519 Msa0140270:intron 45.0%
TAAGTTCCAGCACCTATGAG+AGG + chr1_3:74484542-74484561 None:intergenic 45.0%
GAAGGTGAAGCTATCATTCG+TGG - chr1_3:74484596-74484615 Msa0140270:intron 45.0%
GCTGCAGTTATGGAGTACAA+AGG - chr1_3:74484638-74484657 Msa0140270:intron 45.0%
CTATGGACTTCAACAAGCAG+TGG - chr1_3:74484661-74484680 Msa0140270:intron 45.0%
! TGCAACTGAGAATGGGTTCA+TGG - chr1_3:74484793-74484812 Msa0140270:CDS 45.0%
! AACTGAGAATGGGTTCATGG+AGG - chr1_3:74484796-74484815 Msa0140270:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG - chr1_3:74484807-74484826 Msa0140270:CDS 45.0%
TGACGGTGTGTTGGAAGATT+AGG + chr1_3:74483492-74483511 None:intergenic 45.0%
TAATCTTCCAACACACCGTC+AGG - chr1_3:74483491-74483510 Msa0140270:CDS 45.0%
TGCTCTGACAGCAAAAGGAA+CGG - chr1_3:74483876-74483895 Msa0140270:CDS 45.0%
AGCAAAAGGAACGGTGGAAA+TGG - chr1_3:74483885-74483904 Msa0140270:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG - chr1_3:74483888-74483907 Msa0140270:CDS 45.0%
GGAAATGGAGGCTAGTATCA+TGG - chr1_3:74483900-74483919 Msa0140270:CDS 45.0%
ATGGAGGCTAGTATCATGGA+TGG - chr1_3:74483904-74483923 Msa0140270:CDS 45.0%
!! AGAAGATGTGGTGCTGTATC+TGG - chr1_3:74483934-74483953 Msa0140270:intron 45.0%
ACAAGACGAGCAAGAGAGAT+TGG + chr1_3:74483979-74483998 None:intergenic 45.0%
AGAAGGCGAGGTAAGAATGA+GGG + chr1_3:74484014-74484033 None:intergenic 45.0%
AAATTCTTCTGCACCGGAGA+AGG + chr1_3:74484031-74484050 None:intergenic 45.0%
CCTAGCAAATTCTTCTGCAC+CGG + chr1_3:74484037-74484056 None:intergenic 45.0%
!! CGGTGCAGAAGAATTTGCTA+GGG - chr1_3:74484035-74484054 Msa0140270:intron 45.0%
!!! GTCATGTTTTTTCTAGGGCG+TGG - chr1_3:74484137-74484156 Msa0140270:intron 45.0%
TGGTATGCTGAAACTCGCAA+AGG - chr1_3:74484200-74484219 Msa0140270:intron 45.0%
! TGAATGTGTTTGATGGACGG+TGG - chr1_3:74484322-74484341 Msa0140270:CDS 45.0%
! GTTCCAGCACATTTTTCCGT+TGG + chr1_3:74484368-74484387 None:intergenic 45.0%
! GGCAGACCATTCATTTTCAC+TGG + chr1_3:74484398-74484417 None:intergenic 45.0%
GGGCTGATGAACAAAATGAG+TGG - chr1_3:74484500-74484519 Msa0140270:intron 45.0%
TAAGTTCCAGCACCTATGAG+AGG + chr1_3:74484542-74484561 None:intergenic 45.0%
GAAGGTGAAGCTATCATTCG+TGG - chr1_3:74484596-74484615 Msa0140270:intron 45.0%
GCTGCAGTTATGGAGTACAA+AGG - chr1_3:74484638-74484657 Msa0140270:intron 45.0%
CTATGGACTTCAACAAGCAG+TGG - chr1_3:74484661-74484680 Msa0140270:intron 45.0%
! TGCAACTGAGAATGGGTTCA+TGG - chr1_3:74484793-74484812 Msa0140270:CDS 45.0%
! AACTGAGAATGGGTTCATGG+AGG - chr1_3:74484796-74484815 Msa0140270:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG - chr1_3:74484807-74484826 Msa0140270:CDS 45.0%
!!! AATAATATAATTTTTTAATC+CGG - chr1_3:74483744-74483763 Msa0140270:CDS 5.0%
!!! AATAATATAATTTTTTAATC+CGG - chr1_3:74483744-74483763 Msa0140270:CDS 5.0%
! GGTTGGGCTATTGCTGTTCA+TGG - chr1_3:74483450-74483469 Msa0140270:CDS 50.0%
! TGGGCTATTGCTGTTCATGG+CGG - chr1_3:74483453-74483472 Msa0140270:CDS 50.0%
! GCTGTTTGGCTTCTTCCTGA+CGG + chr1_3:74483509-74483528 None:intergenic 50.0%
CCACGGCCAGAATTGAAAAG+TGG + chr1_3:74483853-74483872 None:intergenic 50.0%
!! CCACTTTTCAATTCTGGCCG+TGG - chr1_3:74483850-74483869 Msa0140270:CDS 50.0%
TTGCTGTCAGAGCAGATCCA+CGG + chr1_3:74483870-74483889 None:intergenic 50.0%
GGATCTGCTCTGACAGCAAA+AGG - chr1_3:74483871-74483890 Msa0140270:CDS 50.0%
TCTGACAGCAAAAGGAACGG+TGG - chr1_3:74483879-74483898 Msa0140270:CDS 50.0%
CTCTCTTGCTCGTCTTGTCA+TGG - chr1_3:74483981-74484000 Msa0140270:intron 50.0%
GAAGGCGAGGTAAGAATGAG+GGG + chr1_3:74484013-74484032 None:intergenic 50.0%
GAGAAGGCGAGGTAAGAATG+AGG + chr1_3:74484015-74484034 None:intergenic 50.0%
CATTCTTACCTCGCCTTCTC+CGG - chr1_3:74484015-74484034 Msa0140270:intron 50.0%
! CCGGTGCAGAAGAATTTGCT+AGG - chr1_3:74484034-74484053 Msa0140270:intron 50.0%
GATTCACCTCTCATAGGTGC+TGG - chr1_3:74484533-74484552 Msa0140270:intron 50.0%
GTGTGTGGAGTTTCATGCAC+TGG - chr1_3:74484572-74484591 Msa0140270:intron 50.0%
! GGAGTTTCATGCACTGGTGA+AGG - chr1_3:74484578-74484597 Msa0140270:intron 50.0%
ACGTGAAGTGGCTGCAGTTA+TGG - chr1_3:74484628-74484647 Msa0140270:intron 50.0%
CGTCTTGATGAAGGGTTTGC+TGG - chr1_3:74484701-74484720 Msa0140270:CDS 50.0%
AGGGGATGTGCAACTGAGAA+TGG - chr1_3:74484785-74484804 Msa0140270:CDS 50.0%
GGGGATGTGCAACTGAGAAT+GGG - chr1_3:74484786-74484805 Msa0140270:CDS 50.0%
! GAGAATGGGTTCATGGAGGT+TGG - chr1_3:74484800-74484819 Msa0140270:CDS 50.0%
! GGTTGGGCTATTGCTGTTCA+TGG - chr1_3:74483450-74483469 Msa0140270:CDS 50.0%
! TGGGCTATTGCTGTTCATGG+CGG - chr1_3:74483453-74483472 Msa0140270:CDS 50.0%
! GCTGTTTGGCTTCTTCCTGA+CGG + chr1_3:74483509-74483528 None:intergenic 50.0%
CCACGGCCAGAATTGAAAAG+TGG + chr1_3:74483853-74483872 None:intergenic 50.0%
!! CCACTTTTCAATTCTGGCCG+TGG - chr1_3:74483850-74483869 Msa0140270:CDS 50.0%
TTGCTGTCAGAGCAGATCCA+CGG + chr1_3:74483870-74483889 None:intergenic 50.0%
GGATCTGCTCTGACAGCAAA+AGG - chr1_3:74483871-74483890 Msa0140270:CDS 50.0%
TCTGACAGCAAAAGGAACGG+TGG - chr1_3:74483879-74483898 Msa0140270:CDS 50.0%
CTCTCTTGCTCGTCTTGTCA+TGG - chr1_3:74483981-74484000 Msa0140270:intron 50.0%
GAAGGCGAGGTAAGAATGAG+GGG + chr1_3:74484013-74484032 None:intergenic 50.0%
GAGAAGGCGAGGTAAGAATG+AGG + chr1_3:74484015-74484034 None:intergenic 50.0%
CATTCTTACCTCGCCTTCTC+CGG - chr1_3:74484015-74484034 Msa0140270:intron 50.0%
! CCGGTGCAGAAGAATTTGCT+AGG - chr1_3:74484034-74484053 Msa0140270:intron 50.0%
GATTCACCTCTCATAGGTGC+TGG - chr1_3:74484533-74484552 Msa0140270:intron 50.0%
GTGTGTGGAGTTTCATGCAC+TGG - chr1_3:74484572-74484591 Msa0140270:intron 50.0%
! GGAGTTTCATGCACTGGTGA+AGG - chr1_3:74484578-74484597 Msa0140270:intron 50.0%
ACGTGAAGTGGCTGCAGTTA+TGG - chr1_3:74484628-74484647 Msa0140270:intron 50.0%
CGTCTTGATGAAGGGTTTGC+TGG - chr1_3:74484701-74484720 Msa0140270:CDS 50.0%
AGGGGATGTGCAACTGAGAA+TGG - chr1_3:74484785-74484804 Msa0140270:CDS 50.0%
GGGGATGTGCAACTGAGAAT+GGG - chr1_3:74484786-74484805 Msa0140270:CDS 50.0%
! GAGAATGGGTTCATGGAGGT+TGG - chr1_3:74484800-74484819 Msa0140270:CDS 50.0%
GCTTCTTCCTGACGGTGTGT+TGG + chr1_3:74483501-74483520 None:intergenic 55.0%
!! CGAGTGCGGAAGCATTGGAT+CGG + chr1_3:74483569-74483588 None:intergenic 55.0%
AAGTTCGACGACGTCGAGTG+CGG + chr1_3:74483583-74483602 None:intergenic 55.0%
!! TTTCTAGGGCGTGGAGACTG+AGG - chr1_3:74484146-74484165 Msa0140270:intron 55.0%
TCCGGCGCGTAAATGCTCAT+CGG + chr1_3:74484419-74484438 None:intergenic 55.0%
!! TGTGTGGTGGTGGACAGTCA+AGG - chr1_3:74484449-74484468 Msa0140270:intron 55.0%
! TGTGCTGCTGCAACCTCAAC+TGG - chr1_3:74484476-74484495 Msa0140270:intron 55.0%
CTGCTGCAACCTCAACTGGA+GGG - chr1_3:74484480-74484499 Msa0140270:intron 55.0%
GTTCATCAGCCCTCCAGTTG+AGG + chr1_3:74484492-74484511 None:intergenic 55.0%
TGGCACTCTTGCACGTGAAG+TGG - chr1_3:74484616-74484635 Msa0140270:intron 55.0%
GCTTCTTCCTGACGGTGTGT+TGG + chr1_3:74483501-74483520 None:intergenic 55.0%
!! CGAGTGCGGAAGCATTGGAT+CGG + chr1_3:74483569-74483588 None:intergenic 55.0%
AAGTTCGACGACGTCGAGTG+CGG + chr1_3:74483583-74483602 None:intergenic 55.0%
!! TTTCTAGGGCGTGGAGACTG+AGG - chr1_3:74484146-74484165 Msa0140270:intron 55.0%
TCCGGCGCGTAAATGCTCAT+CGG + chr1_3:74484419-74484438 None:intergenic 55.0%
!! TGTGTGGTGGTGGACAGTCA+AGG - chr1_3:74484449-74484468 Msa0140270:intron 55.0%
! TGTGCTGCTGCAACCTCAAC+TGG - chr1_3:74484476-74484495 Msa0140270:intron 55.0%
CTGCTGCAACCTCAACTGGA+GGG - chr1_3:74484480-74484499 Msa0140270:intron 55.0%
GTTCATCAGCCCTCCAGTTG+AGG + chr1_3:74484492-74484511 None:intergenic 55.0%
TGGCACTCTTGCACGTGAAG+TGG - chr1_3:74484616-74484635 Msa0140270:intron 55.0%
! ATTGCTGTTCATGGCGGCGC+TGG - chr1_3:74483459-74483478 Msa0140270:CDS 60.0%
! GACGTCGAGTGCGGAAGCAT+TGG + chr1_3:74483574-74483593 None:intergenic 60.0%
GCCGATGAGCATTTACGCGC+CGG - chr1_3:74484415-74484434 Msa0140270:CDS 60.0%
ATTTACGCGCCGGAGACCGT+CGG - chr1_3:74484425-74484444 Msa0140270:CDS 60.0%
ACCACACATCCGACGGTCTC+CGG + chr1_3:74484437-74484456 None:intergenic 60.0%
GTCCACCACCACACATCCGA+CGG + chr1_3:74484444-74484463 None:intergenic 60.0%
GCTGCTGCAACCTCAACTGG+AGG - chr1_3:74484479-74484498 Msa0140270:intron 60.0%
! ATTGCTGTTCATGGCGGCGC+TGG - chr1_3:74483459-74483478 Msa0140270:CDS 60.0%
! GACGTCGAGTGCGGAAGCAT+TGG + chr1_3:74483574-74483593 None:intergenic 60.0%
GCCGATGAGCATTTACGCGC+CGG - chr1_3:74484415-74484434 Msa0140270:CDS 60.0%
ATTTACGCGCCGGAGACCGT+CGG - chr1_3:74484425-74484444 Msa0140270:CDS 60.0%
ACCACACATCCGACGGTCTC+CGG + chr1_3:74484437-74484456 None:intergenic 60.0%
GTCCACCACCACACATCCGA+CGG + chr1_3:74484444-74484463 None:intergenic 60.0%
GCTGCTGCAACCTCAACTGG+AGG - chr1_3:74484479-74484498 Msa0140270:intron 60.0%
!! TGTTCATGGCGGCGCTGGTG+TGG - chr1_3:74483464-74483483 Msa0140270:CDS 65.0%
CTTCTGCACCGGAGAAGGCG+AGG + chr1_3:74484026-74484045 None:intergenic 65.0%
GGAGACCGTCGGATGTGTGG+TGG - chr1_3:74484436-74484455 Msa0140270:intron 65.0%
GACCGTCGGATGTGTGGTGG+TGG - chr1_3:74484439-74484458 Msa0140270:intron 65.0%
!! TGTTCATGGCGGCGCTGGTG+TGG - chr1_3:74483464-74483483 Msa0140270:CDS 65.0%
CTTCTGCACCGGAGAAGGCG+AGG + chr1_3:74484026-74484045 None:intergenic 65.0%
GGAGACCGTCGGATGTGTGG+TGG - chr1_3:74484436-74484455 Msa0140270:intron 65.0%
GACCGTCGGATGTGTGGTGG+TGG - chr1_3:74484439-74484458 Msa0140270:intron 65.0%
GCCGGAGACCGTCGGATGTG+TGG - chr1_3:74484433-74484452 Msa0140270:intron 70.0%
GCCGGAGACCGTCGGATGTG+TGG - chr1_3:74484433-74484452 Msa0140270:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74483444 74484835 74483444 ID=Msa0140270;Name=Msa0140270
chr1_3 mRNA 74483444 74484835 74483444 ID=Msa0140270-mRNA-1;Parent=Msa0140270;Name=Msa0140270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|322
chr1_3 exon 74484674 74484835 74484674 ID=Msa0140270-mRNA-1:exon:25934;Parent=Msa0140270-mRNA-1
chr1_3 exon 74484217 74484450 74484217 ID=Msa0140270-mRNA-1:exon:25933;Parent=Msa0140270-mRNA-1
chr1_3 exon 74484040 74484126 74484040 ID=Msa0140270-mRNA-1:exon:25932;Parent=Msa0140270-mRNA-1
chr1_3 exon 74483444 74483929 74483444 ID=Msa0140270-mRNA-1:exon:25931;Parent=Msa0140270-mRNA-1
chr1_3 CDS 74484674 74484835 74484674 ID=Msa0140270-mRNA-1:cds;Parent=Msa0140270-mRNA-1
chr1_3 CDS 74484217 74484450 74484217 ID=Msa0140270-mRNA-1:cds;Parent=Msa0140270-mRNA-1
chr1_3 CDS 74484040 74484126 74484040 ID=Msa0140270-mRNA-1:cds;Parent=Msa0140270-mRNA-1
chr1_3 CDS 74483444 74483929 74483444 ID=Msa0140270-mRNA-1:cds;Parent=Msa0140270-mRNA-1
Gene Sequence

>Msa0140270

ATGTCTGGTTGGGCTATTGCTGTTCATGGCGGCGCTGGTGTGGATCCTAATCTTCCAACACACCGTCAGGAAGAAGCCAAACAGCTTCTTACCGAATGTCTCAATCTTGGTATCTCTGCTCTCCGATCCAATGCTTCCGCACTCGACGTCGTCGAACTTGTCGTGAGAAAGTTAGAAACAGATCCACTTTTCAATTCTGGCCGTGGATCTGCTCTGACAGCAAAAGGAACGGTGGAAATGGAGGCTAGTATCATGGATGGTAACAAGAGAAGATGTGGTGCTGTATCTGGTGTTTCCACCGTGAAAAATCCAATCTCTCTTGCTCGTCTTGTCATGGAAAAATCCCCTCATTCTTACCTCGCCTTCTCCGGTGCAGAAGAATTTGCTAGGGAACAGGGCGTGGAGACTGAGGACAATGAATATTTCATCACTCCCGATAATGTTGGTATGCTGAAACTCGCAAAGGAAGCTAATACAATACTGTTTGATTATCGAATTCCAACGGAAAAATGTGCTGGAACTGATAGTCCAGTGAAAATGAATGGTCTGCCGATGAGCATTTACGCGCCGGAGACCGTCGGATGTGTGGTGGTGGACAGTCAAGGAAGATGTGCTGCTGCAACCTCAACTGGAGGGCTGATGAACAAAATGAGTGGTCGAATTGGTGATTCACCTCTCATAGGTGCTGGAACTTATGCATGTGATGTGTGTGGAGTTTCATGCACTGGTGAAGGTGAAGCTATCATTCGTGGCACTCTTGCACGTGAAGTGGCTGCAGTTATGGAGTACAAAGGCTATGGACTTCAACAAGCAGTGGATTTTGTGATTAAGCATCGTCTTGATGAAGGGTTTGCTGGTCTTATTGCTGTGTCTAATAAGGGTGAAGTGGCTTATGGGTTCAATTGTAATGGAATGTTTAGGGGATGTGCAACTGAGAATGGGTTCATGGAGGTTGGAATTTGGGAATGA

Protein sequence

>Msa0140270

MSGWAIAVHGGAGVDPNLPTHRQEEAKQLLTECLNLGISALRSNASALDVVELVVRKLETDPLFNSGRGSALTAKGTVEMEASIMDGNKRRCGAVSGVSTVKNPISLARLVMEKSPHSYLAFSGAEEFAREQGVETEDNEYFITPDNVGMLKLAKEANTILFDYRIPTEKCAGTDSPVKMNGLPMSIYAPETVGCVVVDSQGRCAAATSTGGLMNKMSGRIGDSPLIGAGTYACDVCGVSCTGEGEAIIRGTLAREVAAVMEYKGYGLQQAVDFVIKHRLDEGFAGLIAVSNKGEVAYGFNCNGMFRGCATENGFMEVGIWE*