Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143150 | XP_003625808.1 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.57e-125 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143150 | sp|Q9ZNV5|CEN_ARATH | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.66e-97 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143150 | G7L629 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.18e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0143150 | 0.810773 | 9.754543e-51 | -8.615850e-47 |
| Msa0004590 | Msa0143150 | 0.819035 | 1.434651e-52 | -8.615850e-47 |
| Msa0025700 | Msa0143150 | 0.801028 | 1.092351e-48 | -8.615850e-47 |
| Msa0045850 | Msa0143150 | 0.801089 | 1.061610e-48 | -8.615850e-47 |
| Msa0048950 | Msa0143150 | 0.804882 | 1.745439e-49 | -8.615850e-47 |
| Msa0057860 | Msa0143150 | 0.800442 | 1.438806e-48 | -8.615850e-47 |
| Msa0059880 | Msa0143150 | 0.821127 | 4.762554e-53 | -8.615850e-47 |
| Msa0072030 | Msa0143150 | 0.806536 | 7.841625e-50 | -8.615850e-47 |
| Msa0102920 | Msa0143150 | 0.809270 | 2.055946e-50 | -8.615850e-47 |
| Msa0139460 | Msa0143150 | 0.814206 | 1.733889e-51 | -8.615850e-47 |
| Msa0140270 | Msa0143150 | 0.805884 | 1.076118e-49 | -8.615850e-47 |
| Msa0143150 | Msa0147670 | 0.807854 | 4.124903e-50 | -8.615850e-47 |
| Msa0143150 | Msa0147680 | 0.821654 | 3.599595e-53 | -8.615850e-47 |
| Msa0143150 | Msa0150910 | 0.806004 | 1.015401e-49 | -8.615850e-47 |
| Msa0143150 | Msa0190670 | 0.806120 | 9.596774e-50 | -8.615850e-47 |
| Msa0143150 | Msa0261400 | 0.805028 | 1.626564e-49 | -8.615850e-47 |
| Msa0143150 | Msa0274250 | 0.829182 | 5.940203e-55 | -8.615850e-47 |
| Msa0143150 | Msa0298270 | 0.805731 | 1.158493e-49 | -8.615850e-47 |
| Msa0143150 | Msa0336630 | 0.811017 | 8.641002e-51 | -8.615850e-47 |
| Msa0143150 | Msa0349910 | 0.808774 | 2.625646e-50 | -8.615850e-47 |
| Msa0143150 | Msa0366510 | 0.821388 | 4.146833e-53 | -8.615850e-47 |
| Msa0143150 | Msa0374040 | 0.800062 | 1.718961e-48 | -8.615850e-47 |
| Msa0143150 | Msa0374470 | 0.808339 | 3.251032e-50 | -8.615850e-47 |
| Msa0143150 | Msa0374560 | 0.805494 | 1.299553e-49 | -8.615850e-47 |
| Msa0143150 | Msa0374600 | 0.810018 | 1.420169e-50 | -8.615850e-47 |
| Msa0143150 | Msa0396860 | 0.808578 | 2.891132e-50 | -8.615850e-47 |
| Msa0143150 | Msa0414480 | 0.817762 | 2.787288e-52 | -8.615850e-47 |
| Msa0143150 | Msa0423630 | 0.808859 | 2.517878e-50 | -8.615850e-47 |
| Msa0143150 | Msa0444210 | 0.820203 | 7.763992e-53 | -8.615850e-47 |
| Msa0143150 | Msa0469550 | 0.815331 | 9.766733e-52 | -8.615850e-47 |
| Msa0143150 | Msa0470420 | 0.819190 | 1.322553e-52 | -8.615850e-47 |
| Msa0143150 | Msa0515260 | 0.812118 | 4.978355e-51 | -8.615850e-47 |
| Msa0143150 | Msa0525400 | 0.830412 | 2.979846e-55 | -8.615850e-47 |
| Msa0143150 | Msa0531080 | 0.804323 | 2.283233e-49 | -8.615850e-47 |
| Msa0143150 | Msa0535570 | 0.809984 | 1.443825e-50 | -8.615850e-47 |
| Msa0143150 | Msa0587920 | 0.819247 | 1.283673e-52 | -8.615850e-47 |
| Msa0143150 | Msa0591490 | 0.822049 | 2.916466e-53 | -8.615850e-47 |
| Msa0143150 | Msa0602050 | 0.828581 | 8.302008e-55 | -8.615850e-47 |
| Msa0143150 | Msa0603950 | 0.814077 | 1.851029e-51 | -8.615850e-47 |
| Msa0143150 | Msa0631700 | 0.805781 | 1.131044e-49 | -8.615850e-47 |
| Msa0143150 | Msa0640290 | 0.811855 | 5.680749e-51 | -8.615850e-47 |
| Msa0143150 | Msa0643190 | 0.818369 | 2.032080e-52 | -8.615850e-47 |
| Msa0143150 | Msa0645060 | 0.811525 | 6.701556e-51 | -8.615850e-47 |
| Msa0143150 | Msa0670360 | 0.819414 | 1.176352e-52 | -8.615850e-47 |
| Msa0143150 | Msa0678620 | 0.801282 | 9.692936e-49 | -8.615850e-47 |
| Msa0143150 | Msa0684560 | 0.825172 | 5.417979e-54 | -8.615850e-47 |
| Msa0143150 | Msa0684720 | 0.815156 | 1.068141e-51 | -8.615850e-47 |
| Msa0143150 | Msa0716980 | 0.807712 | 4.420340e-50 | -8.615850e-47 |
| Msa0143150 | Msa0727480 | 0.801314 | 9.546339e-49 | -8.615850e-47 |
| Msa0143150 | Msa0735280 | 0.819622 | 1.054495e-52 | -8.615850e-47 |
| Msa0143150 | Msa0758150 | 0.813635 | 2.316964e-51 | -8.615850e-47 |
| Msa0143150 | Msa0768670 | 0.819023 | 1.443789e-52 | -8.615850e-47 |
| Msa0143150 | Msa0768720 | 0.800222 | 1.594718e-48 | -8.615850e-47 |
| Msa0143150 | Msa0777070 | 0.811241 | 7.724064e-51 | -8.615850e-47 |
| Msa0143150 | Msa0777250 | 0.810746 | 9.889175e-51 | -8.615850e-47 |
| Msa0143150 | Msa0814160 | 0.815074 | 1.113769e-51 | -8.615850e-47 |
| Msa0143150 | Msa0814230 | 0.804116 | 2.520639e-49 | -8.615850e-47 |
| Msa0143150 | Msa0817100 | 0.812112 | 4.995517e-51 | -8.615850e-47 |
| Msa0143150 | Msa0822410 | 0.805455 | 1.323696e-49 | -8.615850e-47 |
| Msa0143150 | Msa0824860 | 0.801722 | 7.874809e-49 | -8.615850e-47 |
| Msa0143150 | Msa0854840 | 0.828015 | 1.137001e-54 | -8.615850e-47 |
| Msa0143150 | Msa0861730 | 0.820553 | 6.454198e-53 | -8.615850e-47 |
| Msa0143150 | Msa0883640 | 0.812749 | 3.625196e-51 | -8.615850e-47 |
| Msa0143150 | Msa0907840 | 0.802763 | 4.808763e-49 | -8.615850e-47 |
| Msa0143150 | Msa0910830 | 0.821322 | 4.295201e-53 | -8.615850e-47 |
| Msa0143150 | Msa0910890 | 0.805332 | 1.405272e-49 | -8.615850e-47 |
| Msa0143150 | Msa0913550 | 0.801688 | 8.001654e-49 | -8.615850e-47 |
| Msa0143150 | Msa0941120 | 0.824986 | 5.994416e-54 | -8.615850e-47 |
| Msa0143150 | Msa0960090 | 0.815528 | 8.827409e-52 | -8.615850e-47 |
| Msa0143150 | Msa0967820 | 0.807423 | 5.092188e-50 | -8.615850e-47 |
| Msa0143150 | Msa0985700 | 0.811685 | 6.186982e-51 | -8.615850e-47 |
| Msa0143150 | Msa1015560 | 0.811701 | 6.137578e-51 | -8.615850e-47 |
| Msa0143150 | Msa1022510 | 0.804602 | 1.996433e-49 | -8.615850e-47 |
| Msa0143150 | Msa1024350 | 0.809034 | 2.309522e-50 | -8.615850e-47 |
| Msa0143150 | Msa1061670 | 0.822737 | 2.018298e-53 | -8.615850e-47 |
| Msa0143150 | Msa1064940 | 0.806694 | 7.262171e-50 | -8.615850e-47 |
| Msa0143150 | Msa1076830 | 0.815146 | 1.073748e-51 | -8.615850e-47 |
| Msa0143150 | Msa1087370 | 0.819756 | 9.824400e-53 | -8.615850e-47 |
| Msa0143150 | Msa1106680 | 0.801810 | 7.553285e-49 | -8.615850e-47 |
| Msa0143150 | Msa1106960 | 0.816399 | 5.643329e-52 | -8.615850e-47 |
| Msa0143150 | Msa1109890 | 0.817093 | 3.942354e-52 | -8.615850e-47 |
| Msa0143150 | Msa1164240 | 0.817779 | 2.762896e-52 | -8.615850e-47 |
| Msa0143150 | Msa1164690 | 0.936984 | 7.220749e-98 | -8.615850e-47 |
| Msa0143150 | Msa1170340 | 0.800404 | 1.464392e-48 | -8.615850e-47 |
| Msa0143150 | Msa1181090 | 0.807431 | 5.071969e-50 | -8.615850e-47 |
| Msa0143150 | Msa1181660 | 0.807682 | 4.485652e-50 | -8.615850e-47 |
| Msa0143150 | Msa1216600 | 0.801171 | 1.020984e-48 | -8.615850e-47 |
| Msa0143150 | Msa1269050 | 0.816695 | 4.843712e-52 | -8.615850e-47 |
| Msa0143150 | Msa1323030 | 0.826052 | 3.351629e-54 | -8.615850e-47 |
| Msa0143150 | Msa1323080 | 0.805344 | 1.396929e-49 | -8.615850e-47 |
| Msa0143150 | Msa1323160 | 0.807356 | 5.261467e-50 | -8.615850e-47 |
| Msa0143150 | Msa1343590 | 0.927834 | 6.758596e-92 | -8.615850e-47 |
| Msa0143150 | Msa1357490 | 0.824915 | 6.231139e-54 | -8.615850e-47 |
| Msa0143150 | Msa1376070 | 0.821766 | 3.390984e-53 | -8.615850e-47 |
| Msa0143150 | Msa1377520 | 0.805111 | 1.562862e-49 | -8.615850e-47 |
| Msa0143150 | Msa1378400 | 0.809414 | 1.914400e-50 | -8.615850e-47 |
| Msa0143150 | Msa1378950 | 0.816249 | 6.095195e-52 | -8.615850e-47 |
| Msa0143150 | Msa1386120 | 0.957779 | 1.188362e-115 | -8.615850e-47 |
| Msa0143150 | Msa1387480 | 0.803580 | 3.257541e-49 | -8.615850e-47 |
| Msa0143150 | Msa1407670 | 0.800758 | 1.239946e-48 | -8.615850e-47 |
| Msa0143150 | Msa1411550 | 0.820681 | 6.030526e-53 | -8.615850e-47 |
| Msa0143150 | Msa1426420 | 0.811618 | 6.398314e-51 | -8.615850e-47 |
| Msa0143150 | Msa1427670 | 0.958056 | 6.030861e-116 | -8.615850e-47 |
| Msa0143150 | Msa1445900 | 0.802038 | 6.780179e-49 | -8.615850e-47 |
| Msa0143150 | Msa1449770 | 0.805441 | 1.332976e-49 | -8.615850e-47 |
| Msa0143150 | Msa1459610 | 0.830412 | 2.980160e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143150 | MtrunA17_Chr7g0266201 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.20e-129 | 359 |
| Msa0143150 | MtrunA17_Chr2g0321301 | 76.786 | 168 | 39 | 0 | 7 | 174 | 6 | 173 | 4.79e-100 | 285 |
| Msa0143150 | MtrunA17_Chr6g0472451 | 71.429 | 168 | 47 | 1 | 7 | 174 | 6 | 172 | 1.11e-88 | 256 |
| Msa0143150 | MtrunA17_Chr1g0178751 | 67.879 | 165 | 52 | 1 | 1 | 164 | 1 | 165 | 1.01e-85 | 249 |
| Msa0143150 | MtrunA17_Chr7g0252784 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.28e-68 | 205 |
| Msa0143150 | MtrunA17_Chr6g0461711 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.37e-67 | 202 |
| Msa0143150 | MtrunA17_Chr8g0392741 | 54.023 | 174 | 79 | 1 | 1 | 174 | 1 | 173 | 5.56e-63 | 191 |
| Msa0143150 | MtrunA17_Chr7g0214771 | 55.556 | 171 | 74 | 2 | 5 | 174 | 5 | 174 | 6.18e-63 | 192 |
| Msa0143150 | MtrunA17_Chr7g0214761 | 54.971 | 171 | 75 | 2 | 5 | 174 | 5 | 174 | 4.63e-61 | 187 |
| Msa0143150 | MtrunA17_Chr7g0252800 | 55.090 | 167 | 74 | 1 | 8 | 174 | 9 | 174 | 9.45e-60 | 184 |
| Msa0143150 | MtrunA17_Chr7g0252811 | 53.416 | 161 | 73 | 2 | 14 | 174 | 36 | 194 | 9.83e-56 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143150 | AT2G27550.1 | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.75e-98 | 280 |
| Msa0143150 | AT5G03840.1 | 75.595 | 168 | 41 | 0 | 7 | 174 | 10 | 177 | 3.64e-96 | 276 |
| Msa0143150 | AT5G62040.1 | 63.314 | 169 | 61 | 1 | 7 | 174 | 6 | 174 | 1.33e-78 | 231 |
| Msa0143150 | AT1G65480.1 | 56.805 | 169 | 72 | 1 | 6 | 174 | 6 | 173 | 2.99e-68 | 205 |
| Msa0143150 | AT1G65480.2 | 56.805 | 169 | 72 | 1 | 6 | 174 | 50 | 217 | 5.08e-68 | 206 |
| Msa0143150 | AT4G20370.1 | 55.172 | 174 | 77 | 1 | 1 | 174 | 1 | 173 | 3.25e-64 | 195 |
| Msa0143150 | AT1G18100.1 | 53.801 | 171 | 77 | 2 | 5 | 174 | 4 | 173 | 9.33e-60 | 184 |
Find 51 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATTGTTGTACTGTTTC+TGG | 0.116568 | 1_4:-2079855 | Msa0143150:three_prime_UTR |
| AACCTGTGTATACCTATATT+TGG | 0.186581 | 1_4:+2080285 | None:intergenic |
| ATTAATTAATTATTAAATAA+AGG | 0.232630 | 1_4:-2080059 | Msa0143150:three_prime_UTR |
| TGTATACCTATATTTGGCTT+TGG | 0.348590 | 1_4:+2080291 | None:intergenic |
| ATCAATCTCAACTTTGGGTT+TGG | 0.350978 | 1_4:+2081011 | None:intergenic |
| CCACCATCAATCTCAACTTT+GGG | 0.354792 | 1_4:+2081006 | None:intergenic |
| ATCACTCTTCCAACAATTAG+TGG | 0.360921 | 1_4:+2081138 | None:intergenic |
| ATTATATGCTTTCAAGCTAT+AGG | 0.363789 | 1_4:+2080080 | None:intergenic |
| CTAGTTTGCTCTAATCTGAT+TGG | 0.365683 | 1_4:-2079984 | Msa0143150:three_prime_UTR |
| TTGAAGTAAACAGCAGCAAC+AGG | 0.376187 | 1_4:+2080153 | None:intergenic |
| TTTGCTTCACAGAATGATCT+TGG | 0.386822 | 1_4:-2080180 | Msa0143150:CDS |
| ACCACCATCAATCTCAACTT+TGG | 0.389590 | 1_4:+2081005 | None:intergenic |
| ATGACAGACCCTGATGTTCC+TGG | 0.398979 | 1_4:-2080592 | Msa0143150:CDS |
| CTAATTGTTGGAAGAGTGAT+AGG | 0.399004 | 1_4:-2081135 | Msa0143150:CDS |
| TCACTAGGGCCAGGAACATC+AGG | 0.402435 | 1_4:+2080583 | None:intergenic |
| GAGATACCAAAGCCAAATAT+AGG | 0.411899 | 1_4:-2080297 | Msa0143150:CDS |
| CACGTACGTGTGTCGCAGAA+AGG | 0.434882 | 1_4:-2079922 | Msa0143150:three_prime_UTR |
| TCTCAAGAACCACTAATTGT+TGG | 0.442613 | 1_4:-2081147 | Msa0143150:CDS |
| CAATCAGATTAGAGCAAACT+AGG | 0.446472 | 1_4:+2079985 | None:intergenic |
| TTTCACAAAAGAGTGAGAAA+AGG | 0.461583 | 1_4:+2081181 | None:intergenic |
| AATGTAGCATCTGTTGTTCC+AGG | 0.468348 | 1_4:+2080428 | None:intergenic |
| TTTGGGTTTGGTGTTGATAG+TGG | 0.473117 | 1_4:+2081023 | None:intergenic |
| TTCACAAAAGAGTGAGAAAA+GGG | 0.475211 | 1_4:+2081182 | None:intergenic |
| AAACCCAAAGTTGAGATTGA+TGG | 0.483192 | 1_4:-2081009 | Msa0143150:CDS |
| GGAACAACAGATGCTACATT+TGG | 0.485413 | 1_4:-2080425 | Msa0143150:intron |
| ACGTACGTGTGTCGCAGAAA+GGG | 0.487311 | 1_4:-2079921 | Msa0143150:three_prime_UTR |
| TGACAGCATCACCATCTTCA+AGG | 0.487602 | 1_4:-2080224 | Msa0143150:CDS |
| TATGTATACCAGTGTATAGA+AGG | 0.492217 | 1_4:+2080972 | None:intergenic |
| CTTTCAAGCTATAGGTGCTA+TGG | 0.498189 | 1_4:+2080088 | None:intergenic |
| TCTCTTAGATAAGGATCACT+AGG | 0.515870 | 1_4:+2080568 | None:intergenic |
| AACAAGAAGCAAGTCTTCAA+TGG | 0.516428 | 1_4:-2081063 | Msa0143150:CDS |
| TGCAAGTGTTCTCTTAGATA+AGG | 0.516587 | 1_4:+2080559 | None:intergenic |
| AGGATTGTGACAGATATTCC+TGG | 0.544216 | 1_4:-2080446 | Msa0143150:CDS |
| ATCTAAGAGAACACTTGCAC+TGG | 0.547868 | 1_4:-2080555 | Msa0143150:intron |
| AGATAAGGATCACTAGGGCC+AGG | 0.551174 | 1_4:+2080574 | None:intergenic |
| GGTTTGGTGTTGATAGTGGA+AGG | 0.552605 | 1_4:+2081027 | None:intergenic |
| AAGCTATAGGTGCTATGGCT+AGG | 0.555958 | 1_4:+2080093 | None:intergenic |
| AAGGGAAAAGAAAGTTTGAG+TGG | 0.558053 | 1_4:+2081200 | None:intergenic |
| TAGCTTGATATACTGTCCAT+TGG | 0.562086 | 1_4:-2079880 | Msa0143150:three_prime_UTR |
| GTACAACAATATTTATCCAA+TGG | 0.577871 | 1_4:+2079864 | None:intergenic |
| GACAGCATCACCATCTTCAA+GGG | 0.605051 | 1_4:-2080223 | Msa0143150:CDS |
| TAGCTAGCGTCTTCTTGCAG+CGG | 0.618371 | 1_4:+2080116 | None:intergenic |
| TTGAAGTAATCCCTTGAAGA+TGG | 0.619085 | 1_4:+2080213 | None:intergenic |
| CATGAGGTCCTTCTATACAC+TGG | 0.635578 | 1_4:-2080980 | Msa0143150:intron |
| GTTTGGTGTTGATAGTGGAA+GGG | 0.639090 | 1_4:+2081028 | None:intergenic |
| AGCCAAATATAGGTATACAC+AGG | 0.646467 | 1_4:-2080287 | Msa0143150:CDS |
| CACTAGGGCCAGGAACATCA+GGG | 0.649372 | 1_4:+2080584 | None:intergenic |
| AGATTGATGGTGGTGACATG+AGG | 0.657715 | 1_4:-2080996 | Msa0143150:CDS |
| CTCTTAGATAAGGATCACTA+GGG | 0.658157 | 1_4:+2080569 | None:intergenic |
| TGAAGTAAACAGCAGCAACA+GGG | 0.675086 | 1_4:+2080154 | None:intergenic |
| CCCAAAGTTGAGATTGATGG+TGG | 0.692189 | 1_4:-2081006 | Msa0143150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAATTATTAAATAA+AGG | - | chr1_4:2080932-2080951 | Msa0143150:intron | 0.0% |
| !! | ATTAATTAATTATTAAATAA+AGG | - | chr1_4:2080932-2080951 | Msa0143150:intron | 0.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | + | chr1_4:2080506-2080525 | None:intergenic | 10.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | + | chr1_4:2080506-2080525 | None:intergenic | 10.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | + | chr1_4:2080357-2080376 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | - | chr1_4:2080364-2080383 | Msa0143150:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | - | chr1_4:2080368-2080387 | Msa0143150:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | + | chr1_4:2080487-2080506 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | - | chr1_4:2080525-2080544 | Msa0143150:intron | 20.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | + | chr1_4:2080357-2080376 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | - | chr1_4:2080364-2080383 | Msa0143150:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | - | chr1_4:2080368-2080387 | Msa0143150:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | + | chr1_4:2080487-2080506 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | - | chr1_4:2080525-2080544 | Msa0143150:intron | 20.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | + | chr1_4:2080222-2080241 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | + | chr1_4:2080296-2080315 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | - | chr1_4:2080581-2080600 | Msa0143150:CDS | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | + | chr1_4:2080914-2080933 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | + | chr1_4:2081130-2081149 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | - | chr1_4:2081136-2081155 | Msa0143150:CDS | 25.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | + | chr1_4:2080222-2080241 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | + | chr1_4:2080296-2080315 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | - | chr1_4:2080581-2080600 | Msa0143150:CDS | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | + | chr1_4:2080914-2080933 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | + | chr1_4:2081130-2081149 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | - | chr1_4:2081136-2081155 | Msa0143150:CDS | 25.0% |
| TTCACAAAAGAGTGAGAAAA+GGG | + | chr1_4:2079812-2079831 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | + | chr1_4:2079813-2079832 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | - | chr1_4:2079813-2079832 | Msa0143150:three_prime_UTR | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | + | chr1_4:2080022-2080041 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | + | chr1_4:2080147-2080166 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | - | chr1_4:2080163-2080182 | Msa0143150:CDS | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | - | chr1_4:2080164-2080183 | Msa0143150:CDS | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | + | chr1_4:2080297-2080316 | None:intergenic | 30.0% |
| ! | TATACATATTTGGTTGGTGT+AGG | - | chr1_4:2080374-2080393 | Msa0143150:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | + | chr1_4:2080703-2080722 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | + | chr1_4:2080709-2080728 | None:intergenic | 30.0% | |
| TTCACAAAAGAGTGAGAAAA+GGG | + | chr1_4:2079812-2079831 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | + | chr1_4:2079813-2079832 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | - | chr1_4:2079813-2079832 | Msa0143150:three_prime_UTR | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | + | chr1_4:2080022-2080041 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | + | chr1_4:2080147-2080166 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | - | chr1_4:2080163-2080182 | Msa0143150:CDS | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | - | chr1_4:2080164-2080183 | Msa0143150:CDS | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | + | chr1_4:2080297-2080316 | None:intergenic | 30.0% |
| ! | TATACATATTTGGTTGGTGT+AGG | - | chr1_4:2080374-2080393 | Msa0143150:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | + | chr1_4:2080703-2080722 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | + | chr1_4:2080709-2080728 | None:intergenic | 30.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | + | chr1_4:2079794-2079813 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | - | chr1_4:2079844-2079863 | Msa0143150:three_prime_UTR | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | + | chr1_4:2079856-2079875 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | - | chr1_4:2079856-2079875 | Msa0143150:three_prime_UTR | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | + | chr1_4:2079903-2079922 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | - | chr1_4:2079928-2079947 | Msa0143150:three_prime_UTR | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | + | chr1_4:2079983-2080002 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | - | chr1_4:2079982-2080001 | Msa0143150:three_prime_UTR | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | - | chr1_4:2080139-2080158 | Msa0143150:CDS | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | + | chr1_4:2080292-2080311 | None:intergenic | 35.0% |
| TCATTGTGTGTGTGCTTTAT+TGG | - | chr1_4:2080315-2080334 | Msa0143150:CDS | 35.0% | |
| CTCTTAGATAAGGATCACTA+GGG | + | chr1_4:2080425-2080444 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | + | chr1_4:2080426-2080445 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | + | chr1_4:2080435-2080454 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | - | chr1_4:2080652-2080671 | Msa0143150:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | - | chr1_4:2080653-2080672 | Msa0143150:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | - | chr1_4:2080694-2080713 | Msa0143150:intron | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | - | chr1_4:2080704-2080723 | Msa0143150:intron | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | + | chr1_4:2080781-2080800 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | - | chr1_4:2080811-2080830 | Msa0143150:intron | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | + | chr1_4:2081009-2081028 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | - | chr1_4:2081007-2081026 | Msa0143150:CDS | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | - | chr1_4:2081111-2081130 | Msa0143150:CDS | 35.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | + | chr1_4:2079794-2079813 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | - | chr1_4:2079844-2079863 | Msa0143150:three_prime_UTR | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | + | chr1_4:2079856-2079875 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | - | chr1_4:2079856-2079875 | Msa0143150:three_prime_UTR | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | + | chr1_4:2079903-2079922 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | - | chr1_4:2079928-2079947 | Msa0143150:three_prime_UTR | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | + | chr1_4:2079983-2080002 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | - | chr1_4:2079982-2080001 | Msa0143150:three_prime_UTR | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | - | chr1_4:2080139-2080158 | Msa0143150:CDS | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | + | chr1_4:2080292-2080311 | None:intergenic | 35.0% |
| TCATTGTGTGTGTGCTTTAT+TGG | - | chr1_4:2080315-2080334 | Msa0143150:CDS | 35.0% | |
| CTCTTAGATAAGGATCACTA+GGG | + | chr1_4:2080425-2080444 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | + | chr1_4:2080426-2080445 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | + | chr1_4:2080435-2080454 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | - | chr1_4:2080652-2080671 | Msa0143150:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | - | chr1_4:2080653-2080672 | Msa0143150:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | - | chr1_4:2080694-2080713 | Msa0143150:intron | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | - | chr1_4:2080704-2080723 | Msa0143150:intron | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | + | chr1_4:2080781-2080800 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | - | chr1_4:2080811-2080830 | Msa0143150:intron | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | + | chr1_4:2081009-2081028 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | - | chr1_4:2081007-2081026 | Msa0143150:CDS | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | - | chr1_4:2081111-2081130 | Msa0143150:CDS | 35.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | + | chr1_4:2079896-2079915 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | + | chr1_4:2079902-2079921 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | + | chr1_4:2079904-2079923 | None:intergenic | 40.0% |
| TAGTGGAAGGGAAAAACTCA+TGG | + | chr1_4:2079954-2079973 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTGGAA+GGG | + | chr1_4:2079966-2079985 | None:intergenic | 40.0% |
| !! | TTTGGGTTTGGTGTTGATAG+TGG | + | chr1_4:2079971-2079990 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | + | chr1_4:2079988-2080007 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | + | chr1_4:2079989-2080008 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | + | chr1_4:2080135-2080154 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | + | chr1_4:2080293-2080312 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | - | chr1_4:2080320-2080339 | Msa0143150:CDS | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | - | chr1_4:2080436-2080455 | Msa0143150:CDS | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | - | chr1_4:2080545-2080564 | Msa0143150:intron | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | + | chr1_4:2080566-2080585 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | - | chr1_4:2080566-2080585 | Msa0143150:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | - | chr1_4:2080570-2080589 | Msa0143150:CDS | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | + | chr1_4:2080840-2080859 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | + | chr1_4:2080841-2080860 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | + | chr1_4:2080906-2080925 | None:intergenic | 40.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | + | chr1_4:2079896-2079915 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | + | chr1_4:2079902-2079921 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | + | chr1_4:2079904-2079923 | None:intergenic | 40.0% |
| TAGTGGAAGGGAAAAACTCA+TGG | + | chr1_4:2079954-2079973 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTGGAA+GGG | + | chr1_4:2079966-2079985 | None:intergenic | 40.0% |
| !! | TTTGGGTTTGGTGTTGATAG+TGG | + | chr1_4:2079971-2079990 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | + | chr1_4:2079988-2080007 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | + | chr1_4:2079989-2080008 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | + | chr1_4:2080135-2080154 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | + | chr1_4:2080293-2080312 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | - | chr1_4:2080320-2080339 | Msa0143150:CDS | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | - | chr1_4:2080436-2080455 | Msa0143150:CDS | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | - | chr1_4:2080545-2080564 | Msa0143150:intron | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | + | chr1_4:2080566-2080585 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | - | chr1_4:2080566-2080585 | Msa0143150:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | - | chr1_4:2080570-2080589 | Msa0143150:CDS | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | + | chr1_4:2080840-2080859 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | + | chr1_4:2080841-2080860 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | + | chr1_4:2080906-2080925 | None:intergenic | 40.0% | |
| !! | GGTTTGGTGTTGATAGTGGA+AGG | + | chr1_4:2079967-2079986 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | - | chr1_4:2079985-2080004 | Msa0143150:three_prime_UTR | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | - | chr1_4:2079995-2080014 | Msa0143150:three_prime_UTR | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | - | chr1_4:2080011-2080030 | Msa0143150:three_prime_UTR | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | + | chr1_4:2080134-2080153 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | - | chr1_4:2080767-2080786 | Msa0143150:intron | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | - | chr1_4:2080768-2080787 | Msa0143150:intron | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | + | chr1_4:2080901-2080920 | None:intergenic | 45.0% |
| !! | GGTTTGGTGTTGATAGTGGA+AGG | + | chr1_4:2079967-2079986 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | - | chr1_4:2079985-2080004 | Msa0143150:three_prime_UTR | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | - | chr1_4:2079995-2080014 | Msa0143150:three_prime_UTR | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | - | chr1_4:2080011-2080030 | Msa0143150:three_prime_UTR | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | + | chr1_4:2080134-2080153 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | - | chr1_4:2080767-2080786 | Msa0143150:intron | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | - | chr1_4:2080768-2080787 | Msa0143150:intron | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | + | chr1_4:2080901-2080920 | None:intergenic | 45.0% |
| ATTACTCGGCTATTCCCACG+GGG | + | chr1_4:2080133-2080152 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | - | chr1_4:2080399-2080418 | Msa0143150:intron | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | + | chr1_4:2080420-2080439 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | + | chr1_4:2080878-2080897 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | - | chr1_4:2081070-2081089 | Msa0143150:CDS | 50.0% | |
| ATTACTCGGCTATTCCCACG+GGG | + | chr1_4:2080133-2080152 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | - | chr1_4:2080399-2080418 | Msa0143150:intron | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | + | chr1_4:2080420-2080439 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | + | chr1_4:2080878-2080897 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | - | chr1_4:2081070-2081089 | Msa0143150:CDS | 50.0% | |
| CACTAGGGCCAGGAACATCA+GGG | + | chr1_4:2080410-2080429 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | + | chr1_4:2080411-2080430 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | - | chr1_4:2081069-2081088 | Msa0143150:CDS | 55.0% | |
| CACTAGGGCCAGGAACATCA+GGG | + | chr1_4:2080410-2080429 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | + | chr1_4:2080411-2080430 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | - | chr1_4:2081069-2081088 | Msa0143150:CDS | 55.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | - | chr1_4:2080115-2080134 | Msa0143150:exon | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | - | chr1_4:2080116-2080135 | Msa0143150:exon | 60.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | - | chr1_4:2080115-2080134 | Msa0143150:exon | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | - | chr1_4:2080116-2080135 | Msa0143150:exon | 60.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | + | chr1_4:2080128-2080147 | None:intergenic | 65.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | + | chr1_4:2080128-2080147 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2079770 | 2081243 | 2079770 | ID=Msa0143150;Name=Msa0143150 |
| chr1_4 | mRNA | 2079770 | 2081243 | 2079770 | ID=Msa0143150-mRNA-1;Parent=Msa0143150;Name=Msa0143150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=62|1|1|1|1|1|4|349|174 |
| chr1_4 | exon | 2079770 | 2080339 | 2079770 | ID=Msa0143150-mRNA-1:exon:784;Parent=Msa0143150-mRNA-1 |
| chr1_4 | exon | 2080426 | 2080466 | 2080426 | ID=Msa0143150-mRNA-1:exon:783;Parent=Msa0143150-mRNA-1 |
| chr1_4 | exon | 2080556 | 2080617 | 2080556 | ID=Msa0143150-mRNA-1:exon:782;Parent=Msa0143150-mRNA-1 |
| chr1_4 | exon | 2080981 | 2081243 | 2080981 | ID=Msa0143150-mRNA-1:exon:781;Parent=Msa0143150-mRNA-1 |
| chr1_4 | five_prime_UTR | 2081182 | 2081243 | 2081182 | ID=Msa0143150-mRNA-1:five_prime_utr;Parent=Msa0143150-mRNA-1 |
| chr1_4 | CDS | 2080981 | 2081181 | 2080981 | ID=Msa0143150-mRNA-1:cds;Parent=Msa0143150-mRNA-1 |
| chr1_4 | CDS | 2080556 | 2080617 | 2080556 | ID=Msa0143150-mRNA-1:cds;Parent=Msa0143150-mRNA-1 |
| chr1_4 | CDS | 2080426 | 2080466 | 2080426 | ID=Msa0143150-mRNA-1:cds;Parent=Msa0143150-mRNA-1 |
| chr1_4 | CDS | 2080119 | 2080339 | 2080119 | ID=Msa0143150-mRNA-1:cds;Parent=Msa0143150-mRNA-1 |
| chr1_4 | three_prime_UTR | 2079770 | 2080118 | 2079770 | ID=Msa0143150-mRNA-1:three_prime_utr;Parent=Msa0143150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
