Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164690 | XP_003625808.1 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.57e-125 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164690 | sp|Q9ZNV5|CEN_ARATH | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.66e-97 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164690 | G7L629 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.18e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa1164690 | 0.811200 | 7.884505e-51 | -8.615850e-47 |
| Msa0010150 | Msa1164690 | 0.818940 | 1.507666e-52 | -8.615850e-47 |
| Msa0059880 | Msa1164690 | 0.801695 | 7.973788e-49 | -8.615850e-47 |
| Msa0604200 | Msa1164690 | 0.800867 | 1.178424e-48 | -8.615850e-47 |
| Msa0616010 | Msa1164690 | 0.814856 | 1.244928e-51 | -8.615850e-47 |
| Msa0631700 | Msa1164690 | 0.816359 | 5.761077e-52 | -8.615850e-47 |
| Msa0643190 | Msa1164690 | 0.814084 | 1.844860e-51 | -8.615850e-47 |
| Msa0655430 | Msa1164690 | 0.805532 | 1.275356e-49 | -8.615850e-47 |
| Msa0670360 | Msa1164690 | 0.822774 | 1.978836e-53 | -8.615850e-47 |
| Msa0699230 | Msa1164690 | 0.801093 | 1.059350e-48 | -8.615850e-47 |
| Msa0768670 | Msa1164690 | 0.813550 | 2.418696e-51 | -8.615850e-47 |
| Msa0777070 | Msa1164690 | 0.821176 | 4.640048e-53 | -8.615850e-47 |
| Msa0777250 | Msa1164690 | 0.815992 | 6.957651e-52 | -8.615850e-47 |
| Msa0786940 | Msa1164690 | 0.808106 | 3.645217e-50 | -8.615850e-47 |
| Msa0814160 | Msa1164690 | 0.821573 | 3.757834e-53 | -8.615850e-47 |
| Msa0814230 | Msa1164690 | 0.803691 | 3.089575e-49 | -8.615850e-47 |
| Msa0822410 | Msa1164690 | 0.834328 | 3.194763e-56 | -8.615850e-47 |
| Msa0143150 | Msa1164690 | 0.936984 | 7.220749e-98 | -8.615850e-47 |
| Msa0147680 | Msa1164690 | 0.805476 | 1.310678e-49 | -8.615850e-47 |
| Msa0177550 | Msa1164690 | 0.803917 | 2.773201e-49 | -8.615850e-47 |
| Msa0190670 | Msa1164690 | 0.811253 | 7.680088e-51 | -8.615850e-47 |
| Msa0194230 | Msa1164690 | 0.801486 | 8.800808e-49 | -8.615850e-47 |
| Msa0366510 | Msa1164690 | 0.828847 | 7.159034e-55 | -8.615850e-47 |
| Msa0374040 | Msa1164690 | 0.828547 | 8.462116e-55 | -8.615850e-47 |
| Msa0374470 | Msa1164690 | 0.804410 | 2.189157e-49 | -8.615850e-47 |
| Msa0374600 | Msa1164690 | 0.804872 | 1.753206e-49 | -8.615850e-47 |
| Msa0396860 | Msa1164690 | 0.802015 | 6.854874e-49 | -8.615850e-47 |
| Msa0414480 | Msa1164690 | 0.820643 | 6.154963e-53 | -8.615850e-47 |
| Msa0423220 | Msa1164690 | 0.804287 | 2.322620e-49 | -8.615850e-47 |
| Msa0424540 | Msa1164690 | 0.804744 | 1.864881e-49 | -8.615850e-47 |
| Msa0444210 | Msa1164690 | 0.800829 | 1.199334e-48 | -8.615850e-47 |
| Msa0470420 | Msa1164690 | 0.804138 | 2.494681e-49 | -8.615850e-47 |
| Msa0471390 | Msa1164690 | 0.800949 | 1.133415e-48 | -8.615850e-47 |
| Msa1002820 | Msa1164690 | 0.800965 | 1.125326e-48 | -8.615850e-47 |
| Msa1015560 | Msa1164690 | 0.821897 | 3.162613e-53 | -8.615850e-47 |
| Msa1022490 | Msa1164690 | 0.816823 | 4.532915e-52 | -8.615850e-47 |
| Msa1022510 | Msa1164690 | 0.827518 | 1.496737e-54 | -8.615850e-47 |
| Msa1024350 | Msa1164690 | 0.802718 | 4.911330e-49 | -8.615850e-47 |
| Msa1030320 | Msa1164690 | 0.806433 | 8.247402e-50 | -8.615850e-47 |
| Msa1061670 | Msa1164690 | 0.823080 | 1.679037e-53 | -8.615850e-47 |
| Msa1064940 | Msa1164690 | 0.800487 | 1.408329e-48 | -8.615850e-47 |
| Msa1087370 | Msa1164690 | 0.806759 | 7.036494e-50 | -8.615850e-47 |
| Msa1100330 | Msa1164690 | 0.801963 | 7.024680e-49 | -8.615850e-47 |
| Msa1106680 | Msa1164690 | 0.817498 | 3.197153e-52 | -8.615850e-47 |
| Msa1106960 | Msa1164690 | 0.819083 | 1.399265e-52 | -8.615850e-47 |
| Msa0274250 | Msa1164690 | 0.819914 | 9.044438e-53 | -8.615850e-47 |
| Msa0276580 | Msa1164690 | 0.800661 | 1.297952e-48 | -8.615850e-47 |
| Msa0278460 | Msa1164690 | 0.806427 | 8.270897e-50 | -8.615850e-47 |
| Msa0278950 | Msa1164690 | 0.801534 | 8.606893e-49 | -8.615850e-47 |
| Msa0314440 | Msa1164690 | 0.807677 | 4.497556e-50 | -8.615850e-47 |
| Msa0316600 | Msa1164690 | 0.800121 | 1.672121e-48 | -8.615850e-47 |
| Msa0349910 | Msa1164690 | 0.803705 | 3.068055e-49 | -8.615850e-47 |
| Msa1148210 | Msa1164690 | 0.805182 | 1.509984e-49 | -8.615850e-47 |
| Msa1164690 | Msa1170340 | 0.821150 | 4.704462e-53 | -8.615850e-47 |
| Msa1164690 | Msa1181090 | 0.816850 | 4.470254e-52 | -8.615850e-47 |
| Msa1164690 | Msa1245530 | 0.810103 | 1.361611e-50 | -8.615850e-47 |
| Msa1164690 | Msa1322500 | 0.812124 | 4.963303e-51 | -8.615850e-47 |
| Msa1164690 | Msa1323080 | 0.806422 | 8.289225e-50 | -8.615850e-47 |
| Msa1164690 | Msa1343590 | 0.953103 | 5.723855e-111 | -8.615850e-47 |
| Msa1164690 | Msa1386120 | 0.904312 | 1.399450e-79 | -8.615850e-47 |
| Msa1164690 | Msa1387480 | 0.800679 | 1.286939e-48 | -8.615850e-47 |
| Msa1164690 | Msa1411550 | 0.815938 | 7.152262e-52 | -8.615850e-47 |
| Msa1164690 | Msa1427670 | 0.905010 | 6.740795e-80 | -8.615850e-47 |
| Msa1164690 | Msa1438510 | 0.801426 | 9.054845e-49 | -8.615850e-47 |
| Msa1164690 | Msa1445900 | 0.806710 | 7.206637e-50 | -8.615850e-47 |
| Msa1164690 | Msa1459610 | 0.816076 | 6.661773e-52 | -8.615850e-47 |
| Msa0515130 | Msa1164690 | 0.823582 | 1.281870e-53 | -8.615850e-47 |
| Msa0515150 | Msa1164690 | 0.802698 | 4.959042e-49 | -8.615850e-47 |
| Msa0535570 | Msa1164690 | 0.823004 | 1.748944e-53 | -8.615850e-47 |
| Msa0540640 | Msa1164690 | 0.806506 | 7.960051e-50 | -8.615850e-47 |
| Msa0549170 | Msa1164690 | 0.807901 | 4.030747e-50 | -8.615850e-47 |
| Msa0562050 | Msa1164690 | 0.805844 | 1.097166e-49 | -8.615850e-47 |
| Msa0591490 | Msa1164690 | 0.844324 | 8.111678e-59 | -8.615850e-47 |
| Msa0602050 | Msa1164690 | 0.821109 | 4.808150e-53 | -8.615850e-47 |
| Msa0854840 | Msa1164690 | 0.826878 | 2.130582e-54 | -8.615850e-47 |
| Msa0861730 | Msa1164690 | 0.833547 | 5.008320e-56 | -8.615850e-47 |
| Msa0896920 | Msa1164690 | 0.800703 | 1.272422e-48 | -8.615850e-47 |
| Msa0910890 | Msa1164690 | 0.818802 | 1.620522e-52 | -8.615850e-47 |
| Msa0913550 | Msa1164690 | 0.807720 | 4.404134e-50 | -8.615850e-47 |
| Msa0941120 | Msa1164690 | 0.812819 | 3.499113e-51 | -8.615850e-47 |
| Msa0946310 | Msa1164690 | 0.803393 | 3.561347e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164690 | MtrunA17_Chr7g0266201 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.20e-129 | 359 |
| Msa1164690 | MtrunA17_Chr2g0321301 | 76.786 | 168 | 39 | 0 | 7 | 174 | 6 | 173 | 4.79e-100 | 285 |
| Msa1164690 | MtrunA17_Chr6g0472451 | 71.429 | 168 | 47 | 1 | 7 | 174 | 6 | 172 | 1.11e-88 | 256 |
| Msa1164690 | MtrunA17_Chr1g0178751 | 67.879 | 165 | 52 | 1 | 1 | 164 | 1 | 165 | 1.01e-85 | 249 |
| Msa1164690 | MtrunA17_Chr7g0252784 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.28e-68 | 205 |
| Msa1164690 | MtrunA17_Chr6g0461711 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.37e-67 | 202 |
| Msa1164690 | MtrunA17_Chr8g0392741 | 54.023 | 174 | 79 | 1 | 1 | 174 | 1 | 173 | 5.56e-63 | 191 |
| Msa1164690 | MtrunA17_Chr7g0214771 | 55.556 | 171 | 74 | 2 | 5 | 174 | 5 | 174 | 6.18e-63 | 192 |
| Msa1164690 | MtrunA17_Chr7g0214761 | 54.971 | 171 | 75 | 2 | 5 | 174 | 5 | 174 | 4.63e-61 | 187 |
| Msa1164690 | MtrunA17_Chr7g0252800 | 55.090 | 167 | 74 | 1 | 8 | 174 | 9 | 174 | 9.45e-60 | 184 |
| Msa1164690 | MtrunA17_Chr7g0252811 | 53.416 | 161 | 73 | 2 | 14 | 174 | 36 | 194 | 9.83e-56 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164690 | AT2G27550.1 | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.75e-98 | 280 |
| Msa1164690 | AT5G03840.1 | 75.595 | 168 | 41 | 0 | 7 | 174 | 10 | 177 | 3.64e-96 | 276 |
| Msa1164690 | AT5G62040.1 | 63.314 | 169 | 61 | 1 | 7 | 174 | 6 | 174 | 1.33e-78 | 231 |
| Msa1164690 | AT1G65480.1 | 56.805 | 169 | 72 | 1 | 6 | 174 | 6 | 173 | 2.99e-68 | 205 |
| Msa1164690 | AT1G65480.2 | 56.805 | 169 | 72 | 1 | 6 | 174 | 50 | 217 | 5.08e-68 | 206 |
| Msa1164690 | AT4G20370.1 | 55.172 | 174 | 77 | 1 | 1 | 174 | 1 | 173 | 3.25e-64 | 195 |
| Msa1164690 | AT1G18100.1 | 53.801 | 171 | 77 | 2 | 5 | 174 | 4 | 173 | 9.33e-60 | 184 |
Find 51 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATTGTTGTACTGTTTC+TGG | 0.116568 | 7_4:+56390469 | Msa1164690:three_prime_UTR |
| AACCTGTGTATACCTATATT+TGG | 0.186581 | 7_4:-56390039 | None:intergenic |
| ATTAATTAATTATTAAATAA+AGG | 0.232630 | 7_4:+56390265 | Msa1164690:three_prime_UTR |
| TGTATACCTATATTTGGCTT+TGG | 0.348590 | 7_4:-56390033 | None:intergenic |
| ATCAATCTCAACTTTGGGTT+TGG | 0.350978 | 7_4:-56389283 | None:intergenic |
| CCACCATCAATCTCAACTTT+GGG | 0.354792 | 7_4:-56389288 | None:intergenic |
| ATCACTCTTCCAACAATTAG+TGG | 0.360921 | 7_4:-56389156 | None:intergenic |
| ATTATATGCTTTCAAGCTAT+AGG | 0.363789 | 7_4:-56390244 | None:intergenic |
| CTAGTTTGCTCTAATCTGAT+TGG | 0.365683 | 7_4:+56390340 | Msa1164690:three_prime_UTR |
| TTGAAGTAAACAGCAGCAAC+AGG | 0.376187 | 7_4:-56390171 | None:intergenic |
| TTTGCTTCACAGAATGATCT+TGG | 0.386822 | 7_4:+56390144 | Msa1164690:CDS |
| ACCACCATCAATCTCAACTT+TGG | 0.389590 | 7_4:-56389289 | None:intergenic |
| ATGACAGACCCTGATGTTCC+TGG | 0.398979 | 7_4:+56389732 | Msa1164690:CDS |
| CTAATTGTTGGAAGAGTGAT+AGG | 0.399004 | 7_4:+56389159 | Msa1164690:CDS |
| TCACTAGGGCCAGGAACATC+AGG | 0.402435 | 7_4:-56389741 | None:intergenic |
| GAGATACCAAAGCCAAATAT+AGG | 0.411899 | 7_4:+56390027 | Msa1164690:CDS |
| CACGTACGTGTGTCGCAGAA+AGG | 0.434882 | 7_4:+56390402 | Msa1164690:three_prime_UTR |
| TCTCAAGAACCACTAATTGT+TGG | 0.442613 | 7_4:+56389147 | Msa1164690:CDS |
| CAATCAGATTAGAGCAAACT+AGG | 0.446472 | 7_4:-56390339 | None:intergenic |
| TTTCACAAAAGAGTGAGAAA+AGG | 0.461583 | 7_4:-56389113 | None:intergenic |
| AATGTAGCATCTGTTGTTCC+AGG | 0.468348 | 7_4:-56389896 | None:intergenic |
| TTTGGGTTTGGTGTTGATAG+TGG | 0.473117 | 7_4:-56389271 | None:intergenic |
| TTCACAAAAGAGTGAGAAAA+GGG | 0.475211 | 7_4:-56389112 | None:intergenic |
| AAACCCAAAGTTGAGATTGA+TGG | 0.483192 | 7_4:+56389285 | Msa1164690:CDS |
| GGAACAACAGATGCTACATT+TGG | 0.485413 | 7_4:+56389899 | Msa1164690:CDS |
| ACGTACGTGTGTCGCAGAAA+GGG | 0.487311 | 7_4:+56390403 | Msa1164690:three_prime_UTR |
| TGACAGCATCACCATCTTCA+AGG | 0.487602 | 7_4:+56390100 | Msa1164690:CDS |
| TATGTATACCAGTGTATAGA+AGG | 0.492217 | 7_4:-56389322 | None:intergenic |
| CTTTCAAGCTATAGGTGCTA+TGG | 0.498189 | 7_4:-56390236 | None:intergenic |
| TCTCTTAGATAAGGATCACT+AGG | 0.515870 | 7_4:-56389756 | None:intergenic |
| AACAAGAAGCAAGTCTTCAA+TGG | 0.516428 | 7_4:+56389231 | Msa1164690:CDS |
| TGCAAGTGTTCTCTTAGATA+AGG | 0.516587 | 7_4:-56389765 | None:intergenic |
| AGGATTGTGACAGATATTCC+TGG | 0.544216 | 7_4:+56389878 | Msa1164690:intron |
| ATCTAAGAGAACACTTGCAC+TGG | 0.547868 | 7_4:+56389769 | Msa1164690:CDS |
| AGATAAGGATCACTAGGGCC+AGG | 0.551174 | 7_4:-56389750 | None:intergenic |
| GGTTTGGTGTTGATAGTGGA+AGG | 0.552605 | 7_4:-56389267 | None:intergenic |
| AAGCTATAGGTGCTATGGCT+AGG | 0.555958 | 7_4:-56390231 | None:intergenic |
| AAGGGAAAAGAAAGTTTGAG+TGG | 0.558053 | 7_4:-56389094 | None:intergenic |
| TAGCTTGATATACTGTCCAT+TGG | 0.562086 | 7_4:+56390444 | Msa1164690:three_prime_UTR |
| GTACAACAATATTTATCCAA+TGG | 0.577871 | 7_4:-56390460 | None:intergenic |
| GACAGCATCACCATCTTCAA+GGG | 0.605051 | 7_4:+56390101 | Msa1164690:CDS |
| TAGCTAGCGTCTTCTTGCAG+CGG | 0.618371 | 7_4:-56390208 | None:intergenic |
| TTGAAGTAATCCCTTGAAGA+TGG | 0.619085 | 7_4:-56390111 | None:intergenic |
| CATGAGGTCCTTCTATACAC+TGG | 0.635578 | 7_4:+56389314 | Msa1164690:CDS |
| GTTTGGTGTTGATAGTGGAA+GGG | 0.639090 | 7_4:-56389266 | None:intergenic |
| AGCCAAATATAGGTATACAC+AGG | 0.646467 | 7_4:+56390037 | Msa1164690:CDS |
| CACTAGGGCCAGGAACATCA+GGG | 0.649372 | 7_4:-56389740 | None:intergenic |
| AGATTGATGGTGGTGACATG+AGG | 0.657715 | 7_4:+56389298 | Msa1164690:CDS |
| CTCTTAGATAAGGATCACTA+GGG | 0.658157 | 7_4:-56389755 | None:intergenic |
| TGAAGTAAACAGCAGCAACA+GGG | 0.675086 | 7_4:-56390170 | None:intergenic |
| CCCAAAGTTGAGATTGATGG+TGG | 0.692189 | 7_4:+56389288 | Msa1164690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTATTTTTTTTAT+AGG | - | chr7_4:56389632-56389651 | None:intergenic | 0.0% |
| !! | ATTAATTAATTATTAAATAA+AGG | + | chr7_4:56390265-56390284 | Msa1164690:three_prime_UTR | 0.0% |
| !!! | ATAATTTTTATTTTTTTTAT+AGG | - | chr7_4:56389632-56389651 | None:intergenic | 0.0% |
| !! | ATTAATTAATTATTAAATAA+AGG | + | chr7_4:56390265-56390284 | Msa1164690:three_prime_UTR | 0.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | - | chr7_4:56389839-56389858 | None:intergenic | 10.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | - | chr7_4:56389839-56389858 | None:intergenic | 10.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | - | chr7_4:56389690-56389709 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | + | chr7_4:56389697-56389716 | Msa1164690:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | + | chr7_4:56389701-56389720 | Msa1164690:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | - | chr7_4:56389820-56389839 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | + | chr7_4:56389858-56389877 | Msa1164690:intron | 20.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | - | chr7_4:56389690-56389709 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | + | chr7_4:56389697-56389716 | Msa1164690:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | + | chr7_4:56389701-56389720 | Msa1164690:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | - | chr7_4:56389820-56389839 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | + | chr7_4:56389858-56389877 | Msa1164690:intron | 20.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | - | chr7_4:56389529-56389548 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | - | chr7_4:56389603-56389622 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | + | chr7_4:56389914-56389933 | Msa1164690:intron | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | - | chr7_4:56390247-56390266 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | - | chr7_4:56390463-56390482 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | + | chr7_4:56390469-56390488 | Msa1164690:three_prime_UTR | 25.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | - | chr7_4:56389529-56389548 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | - | chr7_4:56389603-56389622 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | + | chr7_4:56389914-56389933 | Msa1164690:intron | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | - | chr7_4:56390247-56390266 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | - | chr7_4:56390463-56390482 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | + | chr7_4:56390469-56390488 | Msa1164690:three_prime_UTR | 25.0% |
| TTCACAAAAGAGTGAGAAAA+GGG | - | chr7_4:56389115-56389134 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | - | chr7_4:56389116-56389135 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | + | chr7_4:56389116-56389135 | Msa1164690:exon | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | - | chr7_4:56389325-56389344 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | - | chr7_4:56389454-56389473 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | + | chr7_4:56389470-56389489 | Msa1164690:intron | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | + | chr7_4:56389471-56389490 | Msa1164690:intron | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | - | chr7_4:56389604-56389623 | None:intergenic | 30.0% |
| TTATTGTGTGTGTGCTTTAT+TGG | + | chr7_4:56389648-56389667 | Msa1164690:intron | 30.0% | |
| ! | TATACATATTTGGTTGGTGT+AGG | + | chr7_4:56389707-56389726 | Msa1164690:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | - | chr7_4:56390036-56390055 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | - | chr7_4:56390042-56390061 | None:intergenic | 30.0% | |
| TTCACAAAAGAGTGAGAAAA+GGG | - | chr7_4:56389115-56389134 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | - | chr7_4:56389116-56389135 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | + | chr7_4:56389116-56389135 | Msa1164690:exon | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | - | chr7_4:56389325-56389344 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | - | chr7_4:56389454-56389473 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | + | chr7_4:56389470-56389489 | Msa1164690:intron | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | + | chr7_4:56389471-56389490 | Msa1164690:intron | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | - | chr7_4:56389604-56389623 | None:intergenic | 30.0% |
| TTATTGTGTGTGTGCTTTAT+TGG | + | chr7_4:56389648-56389667 | Msa1164690:intron | 30.0% | |
| ! | TATACATATTTGGTTGGTGT+AGG | + | chr7_4:56389707-56389726 | Msa1164690:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | - | chr7_4:56390036-56390055 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | - | chr7_4:56390042-56390061 | None:intergenic | 30.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | - | chr7_4:56389097-56389116 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | + | chr7_4:56389147-56389166 | Msa1164690:CDS | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | - | chr7_4:56389159-56389178 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | + | chr7_4:56389159-56389178 | Msa1164690:CDS | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | - | chr7_4:56389206-56389225 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | + | chr7_4:56389231-56389250 | Msa1164690:CDS | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | - | chr7_4:56389286-56389305 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | + | chr7_4:56389285-56389304 | Msa1164690:CDS | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | + | chr7_4:56389446-56389465 | Msa1164690:intron | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | - | chr7_4:56389599-56389618 | None:intergenic | 35.0% |
| CTCTTAGATAAGGATCACTA+GGG | - | chr7_4:56389758-56389777 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | - | chr7_4:56389759-56389778 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | - | chr7_4:56389768-56389787 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | + | chr7_4:56389985-56390004 | Msa1164690:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | + | chr7_4:56389986-56390005 | Msa1164690:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | + | chr7_4:56390027-56390046 | Msa1164690:CDS | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | + | chr7_4:56390037-56390056 | Msa1164690:CDS | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | - | chr7_4:56390114-56390133 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | + | chr7_4:56390144-56390163 | Msa1164690:CDS | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | - | chr7_4:56390342-56390361 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | + | chr7_4:56390340-56390359 | Msa1164690:three_prime_UTR | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | + | chr7_4:56390444-56390463 | Msa1164690:three_prime_UTR | 35.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | - | chr7_4:56389097-56389116 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | + | chr7_4:56389147-56389166 | Msa1164690:CDS | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | - | chr7_4:56389159-56389178 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | + | chr7_4:56389159-56389178 | Msa1164690:CDS | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | - | chr7_4:56389206-56389225 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | + | chr7_4:56389231-56389250 | Msa1164690:CDS | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | - | chr7_4:56389286-56389305 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | + | chr7_4:56389285-56389304 | Msa1164690:CDS | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | + | chr7_4:56389446-56389465 | Msa1164690:intron | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | - | chr7_4:56389599-56389618 | None:intergenic | 35.0% |
| CTCTTAGATAAGGATCACTA+GGG | - | chr7_4:56389758-56389777 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | - | chr7_4:56389759-56389778 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | - | chr7_4:56389768-56389787 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | + | chr7_4:56389985-56390004 | Msa1164690:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | + | chr7_4:56389986-56390005 | Msa1164690:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | + | chr7_4:56390027-56390046 | Msa1164690:CDS | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | + | chr7_4:56390037-56390056 | Msa1164690:CDS | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | - | chr7_4:56390114-56390133 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | + | chr7_4:56390144-56390163 | Msa1164690:CDS | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | - | chr7_4:56390342-56390361 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | + | chr7_4:56390340-56390359 | Msa1164690:three_prime_UTR | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | + | chr7_4:56390444-56390463 | Msa1164690:three_prime_UTR | 35.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | - | chr7_4:56389199-56389218 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | - | chr7_4:56389205-56389224 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | - | chr7_4:56389207-56389226 | None:intergenic | 40.0% |
| TAGTGGAAGGGAAAAACTCA+TGG | - | chr7_4:56389257-56389276 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTGGAA+GGG | - | chr7_4:56389269-56389288 | None:intergenic | 40.0% |
| !! | TTTGGGTTTGGTGTTGATAG+TGG | - | chr7_4:56389274-56389293 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | - | chr7_4:56389291-56389310 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | - | chr7_4:56389292-56389311 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | - | chr7_4:56389442-56389461 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | - | chr7_4:56389600-56389619 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | + | chr7_4:56389653-56389672 | Msa1164690:intron | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | + | chr7_4:56389769-56389788 | Msa1164690:CDS | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | + | chr7_4:56389878-56389897 | Msa1164690:intron | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | - | chr7_4:56389899-56389918 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | + | chr7_4:56389899-56389918 | Msa1164690:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | + | chr7_4:56389903-56389922 | Msa1164690:intron | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | - | chr7_4:56390173-56390192 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | - | chr7_4:56390174-56390193 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | - | chr7_4:56390239-56390258 | None:intergenic | 40.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | - | chr7_4:56389199-56389218 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | - | chr7_4:56389205-56389224 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | - | chr7_4:56389207-56389226 | None:intergenic | 40.0% |
| TAGTGGAAGGGAAAAACTCA+TGG | - | chr7_4:56389257-56389276 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTGGAA+GGG | - | chr7_4:56389269-56389288 | None:intergenic | 40.0% |
| !! | TTTGGGTTTGGTGTTGATAG+TGG | - | chr7_4:56389274-56389293 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | - | chr7_4:56389291-56389310 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | - | chr7_4:56389292-56389311 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | - | chr7_4:56389442-56389461 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | - | chr7_4:56389600-56389619 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | + | chr7_4:56389653-56389672 | Msa1164690:intron | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | + | chr7_4:56389769-56389788 | Msa1164690:CDS | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | + | chr7_4:56389878-56389897 | Msa1164690:intron | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | - | chr7_4:56389899-56389918 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | + | chr7_4:56389899-56389918 | Msa1164690:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | + | chr7_4:56389903-56389922 | Msa1164690:intron | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | - | chr7_4:56390173-56390192 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | - | chr7_4:56390174-56390193 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | - | chr7_4:56390239-56390258 | None:intergenic | 40.0% | |
| !! | GGTTTGGTGTTGATAGTGGA+AGG | - | chr7_4:56389270-56389289 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | + | chr7_4:56389288-56389307 | Msa1164690:CDS | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | + | chr7_4:56389298-56389317 | Msa1164690:CDS | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | + | chr7_4:56389314-56389333 | Msa1164690:CDS | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | - | chr7_4:56389441-56389460 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | + | chr7_4:56390100-56390119 | Msa1164690:CDS | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | + | chr7_4:56390101-56390120 | Msa1164690:CDS | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | - | chr7_4:56390234-56390253 | None:intergenic | 45.0% |
| !! | GGTTTGGTGTTGATAGTGGA+AGG | - | chr7_4:56389270-56389289 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | + | chr7_4:56389288-56389307 | Msa1164690:CDS | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | + | chr7_4:56389298-56389317 | Msa1164690:CDS | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | + | chr7_4:56389314-56389333 | Msa1164690:CDS | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | - | chr7_4:56389441-56389460 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | + | chr7_4:56390100-56390119 | Msa1164690:CDS | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | + | chr7_4:56390101-56390120 | Msa1164690:CDS | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | - | chr7_4:56390234-56390253 | None:intergenic | 45.0% |
| ATTACTCGGCTATTCCCACG+GGG | - | chr7_4:56389440-56389459 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | + | chr7_4:56389732-56389751 | Msa1164690:CDS | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | - | chr7_4:56389753-56389772 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | - | chr7_4:56390211-56390230 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | + | chr7_4:56390403-56390422 | Msa1164690:three_prime_UTR | 50.0% | |
| ATTACTCGGCTATTCCCACG+GGG | - | chr7_4:56389440-56389459 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | + | chr7_4:56389732-56389751 | Msa1164690:CDS | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | - | chr7_4:56389753-56389772 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | - | chr7_4:56390211-56390230 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | + | chr7_4:56390403-56390422 | Msa1164690:three_prime_UTR | 50.0% | |
| CACTAGGGCCAGGAACATCA+GGG | - | chr7_4:56389743-56389762 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | - | chr7_4:56389744-56389763 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | + | chr7_4:56390402-56390421 | Msa1164690:three_prime_UTR | 55.0% | |
| CACTAGGGCCAGGAACATCA+GGG | - | chr7_4:56389743-56389762 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | - | chr7_4:56389744-56389763 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | + | chr7_4:56390402-56390421 | Msa1164690:three_prime_UTR | 55.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | + | chr7_4:56389422-56389441 | Msa1164690:intron | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | + | chr7_4:56389423-56389442 | Msa1164690:intron | 60.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | + | chr7_4:56389422-56389441 | Msa1164690:intron | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | + | chr7_4:56389423-56389442 | Msa1164690:intron | 60.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | - | chr7_4:56389435-56389454 | None:intergenic | 65.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | - | chr7_4:56389435-56389454 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56389073 | 56390576 | 56389073 | ID=Msa1164690;Name=Msa1164690 |
| chr7_4 | mRNA | 56389073 | 56390576 | 56389073 | ID=Msa1164690-mRNA-1;Parent=Msa1164690;Name=Msa1164690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|1|1|1|1|1|4|349|174 |
| chr7_4 | exon | 56389073 | 56389335 | 56389073 | ID=Msa1164690-mRNA-1:exon:16835;Parent=Msa1164690-mRNA-1 |
| chr7_4 | exon | 56389729 | 56389790 | 56389729 | ID=Msa1164690-mRNA-1:exon:16836;Parent=Msa1164690-mRNA-1 |
| chr7_4 | exon | 56389880 | 56389920 | 56389880 | ID=Msa1164690-mRNA-1:exon:16837;Parent=Msa1164690-mRNA-1 |
| chr7_4 | exon | 56390007 | 56390576 | 56390007 | ID=Msa1164690-mRNA-1:exon:16838;Parent=Msa1164690-mRNA-1 |
| chr7_4 | five_prime_UTR | 56389073 | 56389134 | 56389073 | ID=Msa1164690-mRNA-1:five_prime_utr;Parent=Msa1164690-mRNA-1 |
| chr7_4 | CDS | 56389135 | 56389335 | 56389135 | ID=Msa1164690-mRNA-1:cds;Parent=Msa1164690-mRNA-1 |
| chr7_4 | CDS | 56389729 | 56389790 | 56389729 | ID=Msa1164690-mRNA-1:cds;Parent=Msa1164690-mRNA-1 |
| chr7_4 | CDS | 56389880 | 56389920 | 56389880 | ID=Msa1164690-mRNA-1:cds;Parent=Msa1164690-mRNA-1 |
| chr7_4 | CDS | 56390007 | 56390227 | 56390007 | ID=Msa1164690-mRNA-1:cds;Parent=Msa1164690-mRNA-1 |
| chr7_4 | three_prime_UTR | 56390228 | 56390576 | 56390228 | ID=Msa1164690-mRNA-1:three_prime_utr;Parent=Msa1164690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
