AlfalfaGEDB | Msa1427670

M. sativa cultivar zhongmu-4 / Msa1427670

KEGG: -
GO: GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141
PFAM: PF01161.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427670	XP_003625808.1	99.425	174	1	0	1	174	1	174	4.57e-125	359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427670	sp\|Q9ZNV5\|CEN_ARATH	73.714	175	45	1	1	174	1	175	5.66e-97	280

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427670	G7L629	99.425	174	1	0	1	174	1	174	2.18e-125	359

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa1427670	0.828854	7.133479e-55	-8.615850e-47
Msa0010150	Msa1427670	0.803739	3.019101e-49	-8.615850e-47
Msa0012820	Msa1427670	0.800806	1.212322e-48	-8.615850e-47
Msa0045850	Msa1427670	0.802968	4.360093e-49	-8.615850e-47
Msa0048950	Msa1427670	0.833490	5.174801e-56	-8.615850e-47
Msa0057860	Msa1427670	0.807580	4.716403e-50	-8.615850e-47
Msa0059880	Msa1427670	0.848982	4.329815e-60	-8.615850e-47
Msa0061600	Msa1427670	0.801550	8.538501e-49	-8.615850e-47
Msa0072030	Msa1427670	0.833834	4.245879e-56	-8.615850e-47
Msa0073280	Msa1427670	0.808596	2.865302e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427670	MtrunA17_Chr7g0266201	99.425	174	1	0	1	174	1	174	4.20e-129	359
Msa1427670	MtrunA17_Chr2g0321301	76.786	168	39	0	7	174	6	173	4.79e-100	285
Msa1427670	MtrunA17_Chr6g0472451	71.429	168	47	1	7	174	6	172	1.11e-88	256
Msa1427670	MtrunA17_Chr1g0178751	67.879	165	52	1	1	164	1	165	1.01e-85	249
Msa1427670	MtrunA17_Chr7g0252784	56.897	174	74	1	1	174	1	173	3.28e-68	205
Msa1427670	MtrunA17_Chr6g0461711	56.897	174	74	1	1	174	1	173	3.37e-67	202
Msa1427670	MtrunA17_Chr8g0392741	54.023	174	79	1	1	174	1	173	5.56e-63	191
Msa1427670	MtrunA17_Chr7g0214771	55.556	171	74	2	5	174	5	174	6.18e-63	192
Msa1427670	MtrunA17_Chr7g0214761	54.971	171	75	2	5	174	5	174	4.63e-61	187
Msa1427670	MtrunA17_Chr7g0252800	55.090	167	74	1	8	174	9	174	9.45e-60	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1427670	AT2G27550.1	73.714	175	45	1	1	174	1	175	5.75e-98	280
Msa1427670	AT5G03840.1	75.595	168	41	0	7	174	10	177	3.64e-96	276
Msa1427670	AT5G62040.1	63.314	169	61	1	7	174	6	174	1.33e-78	231
Msa1427670	AT1G65480.1	56.805	169	72	1	6	174	6	173	2.99e-68	205
Msa1427670	AT1G65480.2	56.805	169	72	1	6	174	50	217	5.08e-68	206
Msa1427670	AT4G20370.1	55.172	174	77	1	1	174	1	173	3.25e-64	195
Msa1427670	AT1G18100.1	53.801	171	77	2	5	174	4	173	9.33e-60	184

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Find 50 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAAAGTTGAGATTGA+TGG	0.483192	tig0026197:-49589	Msa1427670:CDS
AAATATTGTTGTACTGTTTC+TGG	0.116568	tig0026197:-48403	Msa1427670:three_prime_UTR
AACAAGAAGCAAGTCTTCAA+TGG	0.516428	tig0026197:-49643	Msa1427670:CDS
AACCTGTGTATACCTATATT+TGG	0.186581	tig0026197:+48833	None:intergenic
AAGCTATAGGTGCTATGGCT+AGG	0.555958	tig0026197:+48641	None:intergenic
AAGGGAAAAGAAAGTTTGAG+TGG	0.558053	tig0026197:+49780	None:intergenic
AATGTAGCATCTGTTGTTCC+AGG	0.468348	tig0026197:+48976	None:intergenic
ACCACCATCAATCTCAACTT+TGG	0.389590	tig0026197:+49585	None:intergenic
ACGTACGTGTGTCGCAGAAA+GGG	0.487311	tig0026197:-48469	Msa1427670:three_prime_UTR
AGATAAGGATCACTAGGGCC+AGG	0.551174	tig0026197:+49122	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCACAAAAGAGTGAGAAAA+GGG	+	tig0026197:48360-48379	None:intergenic	30.0%
TTTCACAAAAGAGTGAGAAA+AGG	+	tig0026197:48361-48380	None:intergenic	30.0%
TATGTATACCAGTGTATAGA+AGG	+	tig0026197:48570-48589	None:intergenic	30.0%
ATGTTCCAACTCATATTACT+CGG	+	tig0026197:48701-48720	None:intergenic	30.0%
TTATTGTGTGTGTGCTTTAT+TGG	-	tig0026197:48895-48914	Msa1427670:intron	30.0%
AACCTGTGTATACCTATATT+TGG	+	tig0026197:49289-49308	None:intergenic	30.0%
TTCACAAAAGAGTGAGAAAA+GGG	+	tig0026197:48360-48379	None:intergenic	30.0%
TTTCACAAAAGAGTGAGAAA+AGG	+	tig0026197:48361-48380	None:intergenic	30.0%
TATGTATACCAGTGTATAGA+AGG	+	tig0026197:48570-48589	None:intergenic	30.0%
ATGTTCCAACTCATATTACT+CGG	+	tig0026197:48701-48720	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026197	gene	48318	49823	48318	ID=Msa1427670;Name=Msa1427670
tig0026197	mRNA	48318	49823	48318	ID=Msa1427670-mRNA-1;Parent=Msa1427670;Name=Msa1427670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62\|1\|1\|1\|1\|1\|4\|349\|174
tig0026197	exon	48318	48887	48318	ID=Msa1427670-mRNA-1:exon:5558;Parent=Msa1427670-mRNA-1
tig0026197	exon	48974	49014	48974	ID=Msa1427670-mRNA-1:exon:5557;Parent=Msa1427670-mRNA-1
tig0026197	exon	49104	49165	49104	ID=Msa1427670-mRNA-1:exon:5556;Parent=Msa1427670-mRNA-1
tig0026197	exon	49561	49823	49561	ID=Msa1427670-mRNA-1:exon:5555;Parent=Msa1427670-mRNA-1
tig0026197	five_prime_UTR	49762	49823	49762	ID=Msa1427670-mRNA-1:five_prime_utr;Parent=Msa1427670-mRNA-1
tig0026197	CDS	49561	49761	49561	ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1
tig0026197	CDS	49104	49165	49104	ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1
tig0026197	CDS	48974	49014	48974	ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1
tig0026197	CDS	48667	48887	48667	ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1
tig0026197	three_prime_UTR	48318	48666	48318	ID=Msa1427670-mRNA-1:three_prime_utr;Parent=Msa1427670-mRNA-1

Gene Sequence

>Msa1427670

ATGGCAAGAATGTCTCAAGAACCACTAATTGTTGGAAGAGTGATAGGAGAAGTTCTTGATTCCTTTACCCCAAGCATGAAAATGACTGTGAGTTACAACAAGAAGCAAGTCTTCAATGGCCATGAGTTTTTCCCTTCGACTATCAACACCAAACCCAAAGTTGAGATTGATGGTGGTGACATGAGGTCCTTCTATACACTGGTGATGACAGACCCTGATGTTCCTGGCCCTAGTGATCCTTATCTAAGAGAACACTTGCACTGGATTGTGACAGATATTCCTGGAACAACAGATGCTACATTTGGGAAAGAAGTAGTGAGCTATGAGATACCAAAGCCAAATATAGGTATACACAGGTTTGTGTTTGTTTTGTTCAAACAAAAGAACAGAGAATCAGTGACAGCATCACCATCTTCAAGGGATTACTTCAACACTCGTAATTTTGCTTCACAGAATGATCTTGGTCTCCCTGTTGCTGCTGTTTACTTCAATGCTCAGAGAGAAACCGCTGCAAGAAGACGCTAG

Protein sequence

>Msa1427670

MARMSQEPLIVGRVIGEVLDSFTPSMKMTVSYNKKQVFNGHEFFPSTINTKPKVEIDGGDMRSFYTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGKEVVSYEIPKPNIGIHRFVFVLFKQKNRESVTASPSSRDYFNTRNFASQNDLGLPVAAVYFNAQRETAARRR*