Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427670 | XP_003625808.1 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.57e-125 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427670 | sp|Q9ZNV5|CEN_ARATH | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.66e-97 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427670 | G7L629 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.18e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa1427670 | 0.828854 | 7.133479e-55 | -8.615850e-47 |
| Msa0010150 | Msa1427670 | 0.803739 | 3.019101e-49 | -8.615850e-47 |
| Msa0012820 | Msa1427670 | 0.800806 | 1.212322e-48 | -8.615850e-47 |
| Msa0045850 | Msa1427670 | 0.802968 | 4.360093e-49 | -8.615850e-47 |
| Msa0048950 | Msa1427670 | 0.833490 | 5.174801e-56 | -8.615850e-47 |
| Msa0057860 | Msa1427670 | 0.807580 | 4.716403e-50 | -8.615850e-47 |
| Msa0059880 | Msa1427670 | 0.848982 | 4.329815e-60 | -8.615850e-47 |
| Msa0061600 | Msa1427670 | 0.801550 | 8.538501e-49 | -8.615850e-47 |
| Msa0072030 | Msa1427670 | 0.833834 | 4.245879e-56 | -8.615850e-47 |
| Msa0073280 | Msa1427670 | 0.808596 | 2.865302e-50 | -8.615850e-47 |
| Msa0074620 | Msa1427670 | 0.817395 | 3.372768e-52 | -8.615850e-47 |
| Msa0084150 | Msa1427670 | 0.805826 | 1.106737e-49 | -8.615850e-47 |
| Msa0102920 | Msa1427670 | 0.821573 | 3.757714e-53 | -8.615850e-47 |
| Msa1350490 | Msa1427670 | 0.804067 | 2.580090e-49 | -8.615850e-47 |
| Msa1355340 | Msa1427670 | 0.810504 | 1.115679e-50 | -8.615850e-47 |
| Msa1357490 | Msa1427670 | 0.826912 | 2.091212e-54 | -8.615850e-47 |
| Msa1357860 | Msa1427670 | 0.809347 | 1.978980e-50 | -8.615850e-47 |
| Msa1373560 | Msa1427670 | 0.805536 | 1.273141e-49 | -8.615850e-47 |
| Msa1376070 | Msa1427670 | 0.846118 | 2.654800e-59 | -8.615850e-47 |
| Msa1377520 | Msa1427670 | 0.828941 | 6.794642e-55 | -8.615850e-47 |
| Msa1378400 | Msa1427670 | 0.812022 | 5.225090e-51 | -8.615850e-47 |
| Msa1378950 | Msa1427670 | 0.810996 | 8.731580e-51 | -8.615850e-47 |
| Msa1386120 | Msa1427670 | 0.999948 | 0.000000e+00 | -8.615850e-47 |
| Msa1407670 | Msa1427670 | 0.810455 | 1.142733e-50 | -8.615850e-47 |
| Msa1411550 | Msa1427670 | 0.828123 | 1.070627e-54 | -8.615850e-47 |
| Msa1420020 | Msa1427670 | 0.802119 | 6.526388e-49 | -8.615850e-47 |
| Msa1421120 | Msa1427670 | 0.822942 | 1.808633e-53 | -8.615850e-47 |
| Msa1421130 | Msa1427670 | 0.814112 | 1.818825e-51 | -8.615850e-47 |
| Msa1426420 | Msa1427670 | 0.824698 | 7.009954e-54 | -8.615850e-47 |
| Msa1427670 | Msa1438860 | 0.803811 | 2.916854e-49 | -8.615850e-47 |
| Msa1427670 | Msa1445900 | 0.814472 | 1.514401e-51 | -8.615850e-47 |
| Msa1427670 | Msa1449770 | 0.814444 | 1.535564e-51 | -8.615850e-47 |
| Msa1427670 | Msa1459610 | 0.839312 | 1.708697e-57 | -8.615850e-47 |
| Msa0603950 | Msa1427670 | 0.841742 | 3.952131e-58 | -8.615850e-47 |
| Msa0605470 | Msa1427670 | 0.828206 | 1.022547e-54 | -8.615850e-47 |
| Msa0631700 | Msa1427670 | 0.817943 | 2.536631e-52 | -8.615850e-47 |
| Msa0640290 | Msa1427670 | 0.827124 | 1.860158e-54 | -8.615850e-47 |
| Msa0643190 | Msa1427670 | 0.813161 | 2.943706e-51 | -8.615850e-47 |
| Msa0643840 | Msa1427670 | 0.815691 | 8.121281e-52 | -8.615850e-47 |
| Msa0645060 | Msa1427670 | 0.806666 | 7.361513e-50 | -8.615850e-47 |
| Msa0645150 | Msa1427670 | 0.802284 | 6.034557e-49 | -8.615850e-47 |
| Msa0670360 | Msa1427670 | 0.838010 | 3.707720e-57 | -8.615850e-47 |
| Msa0678620 | Msa1427670 | 0.832615 | 8.546326e-56 | -8.615850e-47 |
| Msa0684560 | Msa1427670 | 0.820332 | 7.253785e-53 | -8.615850e-47 |
| Msa0684720 | Msa1427670 | 0.830254 | 3.256945e-55 | -8.615850e-47 |
| Msa0711240 | Msa1427670 | 0.800443 | 1.437886e-48 | -8.615850e-47 |
| Msa0716980 | Msa1427670 | 0.810301 | 1.234062e-50 | -8.615850e-47 |
| Msa0727480 | Msa1427670 | 0.832730 | 8.001221e-56 | -8.615850e-47 |
| Msa0735140 | Msa1427670 | 0.800525 | 1.383759e-48 | -8.615850e-47 |
| Msa0735280 | Msa1427670 | 0.824536 | 7.653767e-54 | -8.615850e-47 |
| Msa0735340 | Msa1427670 | 0.800493 | 1.404184e-48 | -8.615850e-47 |
| Msa0758150 | Msa1427670 | 0.811403 | 7.125085e-51 | -8.615850e-47 |
| Msa0768670 | Msa1427670 | 0.830091 | 3.569984e-55 | -8.615850e-47 |
| Msa0768720 | Msa1427670 | 0.827106 | 1.878839e-54 | -8.615850e-47 |
| Msa0777060 | Msa1427670 | 0.801474 | 8.853585e-49 | -8.615850e-47 |
| Msa0777070 | Msa1427670 | 0.817928 | 2.557015e-52 | -8.615850e-47 |
| Msa0777250 | Msa1427670 | 0.821352 | 4.226145e-53 | -8.615850e-47 |
| Msa0787860 | Msa1427670 | 0.807889 | 4.054061e-50 | -8.615850e-47 |
| Msa0791300 | Msa1427670 | 0.816744 | 4.721762e-52 | -8.615850e-47 |
| Msa0814160 | Msa1427670 | 0.827243 | 1.742436e-54 | -8.615850e-47 |
| Msa0814230 | Msa1427670 | 0.804667 | 1.935421e-49 | -8.615850e-47 |
| Msa0817100 | Msa1427670 | 0.812988 | 3.212888e-51 | -8.615850e-47 |
| Msa0824850 | Msa1427670 | 0.802566 | 5.279893e-49 | -8.615850e-47 |
| Msa0824860 | Msa1427670 | 0.824838 | 6.496896e-54 | -8.615850e-47 |
| Msa0121970 | Msa1427670 | 0.802176 | 6.351155e-49 | -8.615850e-47 |
| Msa0131460 | Msa1427670 | 0.820419 | 6.930023e-53 | -8.615850e-47 |
| Msa0139460 | Msa1427670 | 0.821320 | 4.299891e-53 | -8.615850e-47 |
| Msa0140270 | Msa1427670 | 0.827555 | 1.466407e-54 | -8.615850e-47 |
| Msa0143150 | Msa1427670 | 0.958056 | 6.030861e-116 | -8.615850e-47 |
| Msa0143710 | Msa1427670 | 0.814176 | 1.760345e-51 | -8.615850e-47 |
| Msa0143740 | Msa1427670 | 0.802748 | 4.842739e-49 | -8.615850e-47 |
| Msa0143770 | Msa1427670 | 0.807666 | 4.520772e-50 | -8.615850e-47 |
| Msa0147670 | Msa1427670 | 0.823891 | 1.084938e-53 | -8.615850e-47 |
| Msa0147680 | Msa1427670 | 0.828503 | 8.669367e-55 | -8.615850e-47 |
| Msa0150910 | Msa1427670 | 0.822425 | 2.385785e-53 | -8.615850e-47 |
| Msa0163340 | Msa1427670 | 0.800064 | 1.717531e-48 | -8.615850e-47 |
| Msa0170990 | Msa1427670 | 0.815998 | 6.936998e-52 | -8.615850e-47 |
| Msa0177550 | Msa1427670 | 0.814384 | 1.583345e-51 | -8.615850e-47 |
| Msa0190670 | Msa1427670 | 0.818022 | 2.434072e-52 | -8.615850e-47 |
| Msa0195190 | Msa1427670 | 0.815966 | 7.049358e-52 | -8.615850e-47 |
| Msa0219210 | Msa1427670 | 0.805240 | 1.468489e-49 | -8.615850e-47 |
| Msa1233640 | Msa1427670 | 0.801604 | 8.324459e-49 | -8.615850e-47 |
| Msa1269050 | Msa1427670 | 0.823865 | 1.100341e-53 | -8.615850e-47 |
| Msa1296870 | Msa1427670 | 0.824052 | 9.946666e-54 | -8.615850e-47 |
| Msa1300610 | Msa1427670 | 0.806595 | 7.621914e-50 | -8.615850e-47 |
| Msa1323030 | Msa1427670 | 0.858798 | 6.432429e-63 | -8.615850e-47 |
| Msa1323120 | Msa1427670 | 0.821095 | 4.844357e-53 | -8.615850e-47 |
| Msa1323160 | Msa1427670 | 0.829716 | 4.406223e-55 | -8.615850e-47 |
| Msa1329740 | Msa1427670 | 0.806940 | 6.442625e-50 | -8.615850e-47 |
| Msa1341030 | Msa1427670 | 0.806263 | 8.956760e-50 | -8.615850e-47 |
| Msa1343590 | Msa1427670 | 0.940498 | 2.107053e-100 | -8.615850e-47 |
| Msa0366510 | Msa1427670 | 0.818422 | 1.976861e-52 | -8.615850e-47 |
| Msa0374040 | Msa1427670 | 0.802516 | 5.407219e-49 | -8.615850e-47 |
| Msa0374130 | Msa1427670 | 0.822751 | 2.003632e-53 | -8.615850e-47 |
| Msa0396700 | Msa1427670 | 0.812368 | 4.392473e-51 | -8.615850e-47 |
| Msa0414480 | Msa1427670 | 0.821742 | 3.434358e-53 | -8.615850e-47 |
| Msa0444210 | Msa1427670 | 0.816173 | 6.339674e-52 | -8.615850e-47 |
| Msa0469550 | Msa1427670 | 0.818804 | 1.619034e-52 | -8.615850e-47 |
| Msa0472390 | Msa1427670 | 0.804078 | 2.567550e-49 | -8.615850e-47 |
| Msa0985700 | Msa1427670 | 0.852608 | 4.130024e-61 | -8.615850e-47 |
| Msa1006170 | Msa1427670 | 0.811522 | 6.712678e-51 | -8.615850e-47 |
| Msa1015560 | Msa1427670 | 0.811769 | 5.932159e-51 | -8.615850e-47 |
| Msa1020540 | Msa1427670 | 0.802940 | 4.419591e-49 | -8.615850e-47 |
| Msa1021620 | Msa1427670 | 0.823553 | 1.302269e-53 | -8.615850e-47 |
| Msa1022490 | Msa1427670 | 0.809871 | 1.527521e-50 | -8.615850e-47 |
| Msa1022510 | Msa1427670 | 0.817022 | 4.090401e-52 | -8.615850e-47 |
| Msa1024350 | Msa1427670 | 0.828154 | 1.052740e-54 | -8.615850e-47 |
| Msa1026050 | Msa1427670 | 0.803196 | 3.912513e-49 | -8.615850e-47 |
| Msa1061670 | Msa1427670 | 0.837633 | 4.631699e-57 | -8.615850e-47 |
| Msa1064930 | Msa1427670 | 0.800144 | 1.654450e-48 | -8.615850e-47 |
| Msa1064940 | Msa1427670 | 0.809849 | 1.544265e-50 | -8.615850e-47 |
| Msa1076830 | Msa1427670 | 0.840252 | 9.727501e-58 | -8.615850e-47 |
| Msa1081610 | Msa1427670 | 0.807996 | 3.847723e-50 | -8.615850e-47 |
| Msa1087370 | Msa1427670 | 0.821431 | 4.052746e-53 | -8.615850e-47 |
| Msa1087380 | Msa1427670 | 0.811072 | 8.404784e-51 | -8.615850e-47 |
| Msa1106680 | Msa1427670 | 0.812809 | 3.516203e-51 | -8.615850e-47 |
| Msa1106960 | Msa1427670 | 0.831783 | 1.372494e-55 | -8.615850e-47 |
| Msa0241410 | Msa1427670 | 0.800159 | 1.642557e-48 | -8.615850e-47 |
| Msa0259110 | Msa1427670 | 0.803549 | 3.305447e-49 | -8.615850e-47 |
| Msa0269720 | Msa1427670 | 0.811005 | 8.689415e-51 | -8.615850e-47 |
| Msa0274250 | Msa1427670 | 0.832593 | 8.652997e-56 | -8.615850e-47 |
| Msa0274260 | Msa1427670 | 0.808533 | 2.955242e-50 | -8.615850e-47 |
| Msa0278950 | Msa1427670 | 0.814643 | 1.387632e-51 | -8.615850e-47 |
| Msa0298270 | Msa1427670 | 0.826517 | 2.598088e-54 | -8.615850e-47 |
| Msa0314440 | Msa1427670 | 0.805608 | 1.229692e-49 | -8.615850e-47 |
| Msa0336630 | Msa1427670 | 0.830196 | 3.365533e-55 | -8.615850e-47 |
| Msa0349910 | Msa1427670 | 0.815022 | 1.143457e-51 | -8.615850e-47 |
| Msa1109880 | Msa1427670 | 0.817308 | 3.527127e-52 | -8.615850e-47 |
| Msa1109890 | Msa1427670 | 0.846003 | 2.853756e-59 | -8.615850e-47 |
| Msa1123010 | Msa1427670 | 0.800005 | 1.765350e-48 | -8.615850e-47 |
| Msa1136060 | Msa1427670 | 0.803239 | 3.832399e-49 | -8.615850e-47 |
| Msa1149020 | Msa1427670 | 0.804629 | 1.971180e-49 | -8.615850e-47 |
| Msa1164240 | Msa1427670 | 0.817532 | 3.140095e-52 | -8.615850e-47 |
| Msa1164690 | Msa1427670 | 0.905010 | 6.740795e-80 | -8.615850e-47 |
| Msa1170340 | Msa1427670 | 0.808059 | 3.729256e-50 | -8.615850e-47 |
| Msa1173290 | Msa1427670 | 0.812028 | 5.209262e-51 | -8.615850e-47 |
| Msa1181090 | Msa1427670 | 0.806173 | 9.356272e-50 | -8.615850e-47 |
| Msa1181660 | Msa1427670 | 0.808512 | 2.986110e-50 | -8.615850e-47 |
| Msa1216600 | Msa1427670 | 0.829609 | 4.678759e-55 | -8.615850e-47 |
| Msa1220720 | Msa1427670 | 0.800478 | 1.414303e-48 | -8.615850e-47 |
| Msa0491760 | Msa1427670 | 0.822905 | 1.844027e-53 | -8.615850e-47 |
| Msa0491770 | Msa1427670 | 0.818228 | 2.187051e-52 | -8.615850e-47 |
| Msa0491800 | Msa1427670 | 0.815011 | 1.150009e-51 | -8.615850e-47 |
| Msa0515150 | Msa1427670 | 0.802093 | 6.606434e-49 | -8.615850e-47 |
| Msa0515260 | Msa1427670 | 0.819316 | 1.238265e-52 | -8.615850e-47 |
| Msa0525400 | Msa1427670 | 0.816690 | 4.855575e-52 | -8.615850e-47 |
| Msa0531030 | Msa1427670 | 0.805632 | 1.215203e-49 | -8.615850e-47 |
| Msa0531080 | Msa1427670 | 0.810307 | 1.230042e-50 | -8.615850e-47 |
| Msa0535570 | Msa1427670 | 0.819523 | 1.110421e-52 | -8.615850e-47 |
| Msa0538450 | Msa1427670 | 0.813384 | 2.630581e-51 | -8.615850e-47 |
| Msa0538520 | Msa1427670 | 0.810639 | 1.042978e-50 | -8.615850e-47 |
| Msa0540640 | Msa1427670 | 0.803082 | 4.130158e-49 | -8.615850e-47 |
| Msa0543740 | Msa1427670 | 0.819673 | 1.026647e-52 | -8.615850e-47 |
| Msa0548970 | Msa1427670 | 0.812064 | 5.117009e-51 | -8.615850e-47 |
| Msa0584970 | Msa1427670 | 0.802237 | 6.172153e-49 | -8.615850e-47 |
| Msa0587920 | Msa1427670 | 0.821092 | 4.853074e-53 | -8.615850e-47 |
| Msa0591490 | Msa1427670 | 0.831646 | 1.483766e-55 | -8.615850e-47 |
| Msa0594320 | Msa1427670 | 0.819891 | 9.152058e-53 | -8.615850e-47 |
| Msa0599600 | Msa1427670 | 0.821863 | 3.220041e-53 | -8.615850e-47 |
| Msa0602050 | Msa1427670 | 0.813945 | 1.979045e-51 | -8.615850e-47 |
| Msa0854840 | Msa1427670 | 0.835929 | 1.260005e-56 | -8.615850e-47 |
| Msa0861730 | Msa1427670 | 0.811786 | 5.881344e-51 | -8.615850e-47 |
| Msa0863840 | Msa1427670 | 0.812950 | 3.276270e-51 | -8.615850e-47 |
| Msa0864160 | Msa1427670 | 0.819998 | 8.652450e-53 | -8.615850e-47 |
| Msa0883640 | Msa1427670 | 0.853464 | 2.349631e-61 | -8.615850e-47 |
| Msa0890210 | Msa1427670 | 0.801492 | 8.779237e-49 | -8.615850e-47 |
| Msa0896920 | Msa1427670 | 0.817315 | 3.514321e-52 | -8.615850e-47 |
| Msa0896950 | Msa1427670 | 0.806945 | 6.427744e-50 | -8.615850e-47 |
| Msa0902340 | Msa1427670 | 0.812710 | 3.697672e-51 | -8.615850e-47 |
| Msa0907840 | Msa1427670 | 0.802445 | 5.592538e-49 | -8.615850e-47 |
| Msa0910830 | Msa1427670 | 0.858095 | 1.042240e-62 | -8.615850e-47 |
| Msa0910890 | Msa1427670 | 0.808499 | 3.006181e-50 | -8.615850e-47 |
| Msa0913550 | Msa1427670 | 0.801011 | 1.100826e-48 | -8.615850e-47 |
| Msa0932930 | Msa1427670 | 0.808325 | 3.274159e-50 | -8.615850e-47 |
| Msa0941120 | Msa1427670 | 0.837311 | 5.603688e-57 | -8.615850e-47 |
| Msa0960090 | Msa1427670 | 0.856007 | 4.304354e-62 | -8.615850e-47 |
| Msa0962290 | Msa1427670 | 0.812071 | 5.098938e-51 | -8.615850e-47 |
| Msa0967820 | Msa1427670 | 0.817616 | 3.006931e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427670 | MtrunA17_Chr7g0266201 | 99.425 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 4.20e-129 | 359 |
| Msa1427670 | MtrunA17_Chr2g0321301 | 76.786 | 168 | 39 | 0 | 7 | 174 | 6 | 173 | 4.79e-100 | 285 |
| Msa1427670 | MtrunA17_Chr6g0472451 | 71.429 | 168 | 47 | 1 | 7 | 174 | 6 | 172 | 1.11e-88 | 256 |
| Msa1427670 | MtrunA17_Chr1g0178751 | 67.879 | 165 | 52 | 1 | 1 | 164 | 1 | 165 | 1.01e-85 | 249 |
| Msa1427670 | MtrunA17_Chr7g0252784 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.28e-68 | 205 |
| Msa1427670 | MtrunA17_Chr6g0461711 | 56.897 | 174 | 74 | 1 | 1 | 174 | 1 | 173 | 3.37e-67 | 202 |
| Msa1427670 | MtrunA17_Chr8g0392741 | 54.023 | 174 | 79 | 1 | 1 | 174 | 1 | 173 | 5.56e-63 | 191 |
| Msa1427670 | MtrunA17_Chr7g0214771 | 55.556 | 171 | 74 | 2 | 5 | 174 | 5 | 174 | 6.18e-63 | 192 |
| Msa1427670 | MtrunA17_Chr7g0214761 | 54.971 | 171 | 75 | 2 | 5 | 174 | 5 | 174 | 4.63e-61 | 187 |
| Msa1427670 | MtrunA17_Chr7g0252800 | 55.090 | 167 | 74 | 1 | 8 | 174 | 9 | 174 | 9.45e-60 | 184 |
| Msa1427670 | MtrunA17_Chr7g0252811 | 53.416 | 161 | 73 | 2 | 14 | 174 | 36 | 194 | 9.83e-56 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427670 | AT2G27550.1 | 73.714 | 175 | 45 | 1 | 1 | 174 | 1 | 175 | 5.75e-98 | 280 |
| Msa1427670 | AT5G03840.1 | 75.595 | 168 | 41 | 0 | 7 | 174 | 10 | 177 | 3.64e-96 | 276 |
| Msa1427670 | AT5G62040.1 | 63.314 | 169 | 61 | 1 | 7 | 174 | 6 | 174 | 1.33e-78 | 231 |
| Msa1427670 | AT1G65480.1 | 56.805 | 169 | 72 | 1 | 6 | 174 | 6 | 173 | 2.99e-68 | 205 |
| Msa1427670 | AT1G65480.2 | 56.805 | 169 | 72 | 1 | 6 | 174 | 50 | 217 | 5.08e-68 | 206 |
| Msa1427670 | AT4G20370.1 | 55.172 | 174 | 77 | 1 | 1 | 174 | 1 | 173 | 3.25e-64 | 195 |
| Msa1427670 | AT1G18100.1 | 53.801 | 171 | 77 | 2 | 5 | 174 | 4 | 173 | 9.33e-60 | 184 |
Find 50 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATTGTTGTACTGTTTC+TGG | 0.116568 | tig0026197:-48403 | Msa1427670:three_prime_UTR |
| AACCTGTGTATACCTATATT+TGG | 0.186581 | tig0026197:+48833 | None:intergenic |
| ATTAATTAATTATTAAATAA+AGG | 0.232630 | tig0026197:-48607 | Msa1427670:three_prime_UTR |
| TGTATACCTATATTTGGCTT+TGG | 0.348590 | tig0026197:+48839 | None:intergenic |
| ATCAATCTCAACTTTGGGTT+TGG | 0.350978 | tig0026197:+49591 | None:intergenic |
| CCACCATCAATCTCAACTTT+GGG | 0.354792 | tig0026197:+49586 | None:intergenic |
| ATCACTCTTCCAACAATTAG+TGG | 0.360921 | tig0026197:+49718 | None:intergenic |
| ATTATATGCTTTCAAGCTAT+AGG | 0.363789 | tig0026197:+48628 | None:intergenic |
| CTAGTTTGCTCTAATCTGAT+TGG | 0.365683 | tig0026197:-48532 | Msa1427670:three_prime_UTR |
| TTGAAGTAAACAGCAGCAAC+AGG | 0.376187 | tig0026197:+48701 | None:intergenic |
| TTTGCTTCACAGAATGATCT+TGG | 0.386822 | tig0026197:-48728 | Msa1427670:CDS |
| ACCACCATCAATCTCAACTT+TGG | 0.389590 | tig0026197:+49585 | None:intergenic |
| ATGACAGACCCTGATGTTCC+TGG | 0.398979 | tig0026197:-49140 | Msa1427670:CDS |
| CTAATTGTTGGAAGAGTGAT+AGG | 0.399004 | tig0026197:-49715 | Msa1427670:CDS |
| TCACTAGGGCCAGGAACATC+AGG | 0.402435 | tig0026197:+49131 | None:intergenic |
| GAGATACCAAAGCCAAATAT+AGG | 0.411899 | tig0026197:-48845 | Msa1427670:CDS |
| CACGTACGTGTGTCGCAGAA+AGG | 0.434882 | tig0026197:-48470 | Msa1427670:three_prime_UTR |
| TCTCAAGAACCACTAATTGT+TGG | 0.442613 | tig0026197:-49727 | Msa1427670:CDS |
| CAATCAGATTAGAGCAAACT+AGG | 0.446472 | tig0026197:+48533 | None:intergenic |
| TTTCACAAAAGAGTGAGAAA+AGG | 0.461583 | tig0026197:+49761 | None:intergenic |
| AATGTAGCATCTGTTGTTCC+AGG | 0.468348 | tig0026197:+48976 | None:intergenic |
| TTCACAAAAGAGTGAGAAAA+GGG | 0.475211 | tig0026197:+49762 | None:intergenic |
| AAACCCAAAGTTGAGATTGA+TGG | 0.483192 | tig0026197:-49589 | Msa1427670:CDS |
| GGAACAACAGATGCTACATT+TGG | 0.485413 | tig0026197:-48973 | Msa1427670:intron |
| ACGTACGTGTGTCGCAGAAA+GGG | 0.487311 | tig0026197:-48469 | Msa1427670:three_prime_UTR |
| TGACAGCATCACCATCTTCA+AGG | 0.487602 | tig0026197:-48772 | Msa1427670:CDS |
| TATGTATACCAGTGTATAGA+AGG | 0.492217 | tig0026197:+49552 | None:intergenic |
| CTTTCAAGCTATAGGTGCTA+TGG | 0.498189 | tig0026197:+48636 | None:intergenic |
| TCTCTTAGATAAGGATCACT+AGG | 0.515870 | tig0026197:+49116 | None:intergenic |
| AACAAGAAGCAAGTCTTCAA+TGG | 0.516428 | tig0026197:-49643 | Msa1427670:CDS |
| TGCAAGTGTTCTCTTAGATA+AGG | 0.516587 | tig0026197:+49107 | None:intergenic |
| GGTTTGGTGTTGATAGTCGA+AGG | 0.534416 | tig0026197:+49607 | None:intergenic |
| AGGATTGTGACAGATATTCC+TGG | 0.544216 | tig0026197:-48994 | Msa1427670:CDS |
| ATCTAAGAGAACACTTGCAC+TGG | 0.547868 | tig0026197:-49103 | Msa1427670:intron |
| AGATAAGGATCACTAGGGCC+AGG | 0.551174 | tig0026197:+49122 | None:intergenic |
| AAGCTATAGGTGCTATGGCT+AGG | 0.555958 | tig0026197:+48641 | None:intergenic |
| AAGGGAAAAGAAAGTTTGAG+TGG | 0.558053 | tig0026197:+49780 | None:intergenic |
| TAGCTTGATATACTGTCCAT+TGG | 0.562086 | tig0026197:-48428 | Msa1427670:three_prime_UTR |
| GTACAACAATATTTATCCAA+TGG | 0.577871 | tig0026197:+48412 | None:intergenic |
| GACAGCATCACCATCTTCAA+GGG | 0.605051 | tig0026197:-48771 | Msa1427670:CDS |
| TAGCTAGCGTCTTCTTGCAG+CGG | 0.618371 | tig0026197:+48664 | None:intergenic |
| TTGAAGTAATCCCTTGAAGA+TGG | 0.619085 | tig0026197:+48761 | None:intergenic |
| GTTTGGTGTTGATAGTCGAA+GGG | 0.622748 | tig0026197:+49608 | None:intergenic |
| CATGAGGTCCTTCTATACAC+TGG | 0.635578 | tig0026197:-49560 | Msa1427670:intron |
| AGCCAAATATAGGTATACAC+AGG | 0.646467 | tig0026197:-48835 | Msa1427670:CDS |
| CACTAGGGCCAGGAACATCA+GGG | 0.649372 | tig0026197:+49132 | None:intergenic |
| AGATTGATGGTGGTGACATG+AGG | 0.657715 | tig0026197:-49576 | Msa1427670:CDS |
| CTCTTAGATAAGGATCACTA+GGG | 0.658157 | tig0026197:+49117 | None:intergenic |
| TGAAGTAAACAGCAGCAACA+GGG | 0.675086 | tig0026197:+48702 | None:intergenic |
| CCCAAAGTTGAGATTGATGG+TGG | 0.692189 | tig0026197:-49586 | Msa1427670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTATTTTTTTTAT+AGG | + | tig0026197:48879-48898 | None:intergenic | 0.0% |
| !! | ATTAATTAATTATTAAATAA+AGG | - | tig0026197:49512-49531 | Msa1427670:intron | 0.0% |
| !!! | ATAATTTTTATTTTTTTTAT+AGG | + | tig0026197:48879-48898 | None:intergenic | 0.0% |
| !! | ATTAATTAATTATTAAATAA+AGG | - | tig0026197:49512-49531 | Msa1427670:intron | 0.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | + | tig0026197:49086-49105 | None:intergenic | 10.0% |
| !! | ATTTAAAAAAACAAAATGAA+TGG | + | tig0026197:49086-49105 | None:intergenic | 10.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | + | tig0026197:48937-48956 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | - | tig0026197:48944-48963 | Msa1427670:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | - | tig0026197:48948-48967 | Msa1427670:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | + | tig0026197:49067-49086 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | - | tig0026197:49105-49124 | Msa1427670:CDS | 20.0% |
| !! | ATATATTAGCTCAATGATTT+AGG | + | tig0026197:48937-48956 | None:intergenic | 20.0% |
| !! | TGAGCTAATATATACATATT+TGG | - | tig0026197:48944-48963 | Msa1427670:intron | 20.0% |
| !! | CTAATATATACATATTTGGT+TGG | - | tig0026197:48948-48967 | Msa1427670:intron | 20.0% |
| !! | ATGGTTAATTTATAGATATG+TGG | + | tig0026197:49067-49086 | None:intergenic | 20.0% |
| !!! | TTCTGTTATTTATTTAATGC+AGG | - | tig0026197:49105-49124 | Msa1427670:CDS | 20.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | + | tig0026197:48776-48795 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | + | tig0026197:48850-48869 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | - | tig0026197:49161-49180 | Msa1427670:intron | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | + | tig0026197:49494-49513 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | + | tig0026197:49710-49729 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | - | tig0026197:49716-49735 | Msa1427670:CDS | 25.0% |
| ! | ATCTCTAACTATATCTAACA+AGG | + | tig0026197:48776-48795 | None:intergenic | 25.0% |
| !!! | ATAGTTGTTAGTTTGTTAGA+GGG | + | tig0026197:48850-48869 | None:intergenic | 25.0% |
| !!! | ACATTTGGTAGGTATTTTAA+TGG | - | tig0026197:49161-49180 | Msa1427670:intron | 25.0% |
| ! | ATTATATGCTTTCAAGCTAT+AGG | + | tig0026197:49494-49513 | None:intergenic | 25.0% |
| ! | GTACAACAATATTTATCCAA+TGG | + | tig0026197:49710-49729 | None:intergenic | 25.0% |
| ! | AAATATTGTTGTACTGTTTC+TGG | - | tig0026197:49716-49735 | Msa1427670:CDS | 25.0% |
| TTCACAAAAGAGTGAGAAAA+GGG | + | tig0026197:48360-48379 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | + | tig0026197:48361-48380 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | - | tig0026197:48361-48380 | Msa1427670:three_prime_UTR | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | + | tig0026197:48570-48589 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | + | tig0026197:48701-48720 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | - | tig0026197:48717-48736 | Msa1427670:CDS | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | - | tig0026197:48718-48737 | Msa1427670:CDS | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | + | tig0026197:48851-48870 | None:intergenic | 30.0% |
| TTATTGTGTGTGTGCTTTAT+TGG | - | tig0026197:48895-48914 | Msa1427670:intron | 30.0% | |
| ! | TATACATATTTGGTTGGTGT+AGG | - | tig0026197:48954-48973 | Msa1427670:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | + | tig0026197:49283-49302 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | + | tig0026197:49289-49308 | None:intergenic | 30.0% | |
| TTCACAAAAGAGTGAGAAAA+GGG | + | tig0026197:48360-48379 | None:intergenic | 30.0% | |
| TTTCACAAAAGAGTGAGAAA+AGG | + | tig0026197:48361-48380 | None:intergenic | 30.0% | |
| ! | TTTCTCACTCTTTTGTGAAA+TGG | - | tig0026197:48361-48380 | Msa1427670:three_prime_UTR | 30.0% |
| TATGTATACCAGTGTATAGA+AGG | + | tig0026197:48570-48589 | None:intergenic | 30.0% | |
| ATGTTCCAACTCATATTACT+CGG | + | tig0026197:48701-48720 | None:intergenic | 30.0% | |
| ! | ACATCGAAGTATTTATATGC+AGG | - | tig0026197:48717-48736 | Msa1427670:CDS | 30.0% |
| ! | CATCGAAGTATTTATATGCA+GGG | - | tig0026197:48718-48737 | Msa1427670:CDS | 30.0% |
| !! | GATAGTTGTTAGTTTGTTAG+AGG | + | tig0026197:48851-48870 | None:intergenic | 30.0% |
| TTATTGTGTGTGTGCTTTAT+TGG | - | tig0026197:48895-48914 | Msa1427670:intron | 30.0% | |
| ! | TATACATATTTGGTTGGTGT+AGG | - | tig0026197:48954-48973 | Msa1427670:intron | 30.0% |
| ! | TGTATACCTATATTTGGCTT+TGG | + | tig0026197:49283-49302 | None:intergenic | 30.0% |
| AACCTGTGTATACCTATATT+TGG | + | tig0026197:49289-49308 | None:intergenic | 30.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | + | tig0026197:48342-48361 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | - | tig0026197:48392-48411 | Msa1427670:three_prime_UTR | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | + | tig0026197:48404-48423 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | - | tig0026197:48404-48423 | Msa1427670:three_prime_UTR | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | + | tig0026197:48451-48470 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | - | tig0026197:48476-48495 | Msa1427670:three_prime_UTR | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | + | tig0026197:48531-48550 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | - | tig0026197:48530-48549 | Msa1427670:three_prime_UTR | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | - | tig0026197:48693-48712 | Msa1427670:CDS | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | + | tig0026197:48846-48865 | None:intergenic | 35.0% |
| CTCTTAGATAAGGATCACTA+GGG | + | tig0026197:49005-49024 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | + | tig0026197:49006-49025 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | + | tig0026197:49015-49034 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | - | tig0026197:49232-49251 | Msa1427670:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | - | tig0026197:49233-49252 | Msa1427670:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | - | tig0026197:49274-49293 | Msa1427670:intron | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | - | tig0026197:49284-49303 | Msa1427670:intron | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | + | tig0026197:49361-49380 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | - | tig0026197:49391-49410 | Msa1427670:intron | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | + | tig0026197:49589-49608 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | - | tig0026197:49587-49606 | Msa1427670:CDS | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | - | tig0026197:49691-49710 | Msa1427670:CDS | 35.0% | |
| AAGGGAAAAGAAAGTTTGAG+TGG | + | tig0026197:48342-48361 | None:intergenic | 35.0% | |
| TCTCAAGAACCACTAATTGT+TGG | - | tig0026197:48392-48411 | Msa1427670:three_prime_UTR | 35.0% | |
| ATCACTCTTCCAACAATTAG+TGG | + | tig0026197:48404-48423 | None:intergenic | 35.0% | |
| CTAATTGTTGGAAGAGTGAT+AGG | - | tig0026197:48404-48423 | Msa1427670:three_prime_UTR | 35.0% | |
| !! | TCACAGTCATTTTCATGCTT+GGG | + | tig0026197:48451-48470 | None:intergenic | 35.0% |
| AACAAGAAGCAAGTCTTCAA+TGG | - | tig0026197:48476-48495 | Msa1427670:three_prime_UTR | 35.0% | |
| ! | ATCAATCTCAACTTTGGGTT+TGG | + | tig0026197:48531-48550 | None:intergenic | 35.0% |
| AAACCCAAAGTTGAGATTGA+TGG | - | tig0026197:48530-48549 | Msa1427670:three_prime_UTR | 35.0% | |
| AATAGCCGAGTAATATGAGT+TGG | - | tig0026197:48693-48712 | Msa1427670:CDS | 35.0% | |
| !! | TTGTTAGTTTGTTAGAGGGA+GGG | + | tig0026197:48846-48865 | None:intergenic | 35.0% |
| CTCTTAGATAAGGATCACTA+GGG | + | tig0026197:49005-49024 | None:intergenic | 35.0% | |
| TCTCTTAGATAAGGATCACT+AGG | + | tig0026197:49006-49025 | None:intergenic | 35.0% | |
| TGCAAGTGTTCTCTTAGATA+AGG | + | tig0026197:49015-49034 | None:intergenic | 35.0% | |
| TGAAATTGTAACACATGCAC+AGG | - | tig0026197:49232-49251 | Msa1427670:intron | 35.0% | |
| GAAATTGTAACACATGCACA+GGG | - | tig0026197:49233-49252 | Msa1427670:intron | 35.0% | |
| GAGATACCAAAGCCAAATAT+AGG | - | tig0026197:49274-49293 | Msa1427670:intron | 35.0% | |
| AGCCAAATATAGGTATACAC+AGG | - | tig0026197:49284-49303 | Msa1427670:intron | 35.0% | |
| TTGAAGTAATCCCTTGAAGA+TGG | + | tig0026197:49361-49380 | None:intergenic | 35.0% | |
| TTTGCTTCACAGAATGATCT+TGG | - | tig0026197:49391-49410 | Msa1427670:intron | 35.0% | |
| CAATCAGATTAGAGCAAACT+AGG | + | tig0026197:49589-49608 | None:intergenic | 35.0% | |
| !! | CTAGTTTGCTCTAATCTGAT+TGG | - | tig0026197:49587-49606 | Msa1427670:CDS | 35.0% |
| TAGCTTGATATACTGTCCAT+TGG | - | tig0026197:49691-49710 | Msa1427670:CDS | 35.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | + | tig0026197:48444-48463 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | + | tig0026197:48450-48469 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | + | tig0026197:48452-48471 | None:intergenic | 40.0% |
| TAGTCGAAGGGAAAAACTCA+TGG | + | tig0026197:48502-48521 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTCGAA+GGG | + | tig0026197:48514-48533 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | + | tig0026197:48536-48555 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | + | tig0026197:48537-48556 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | + | tig0026197:48689-48708 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | + | tig0026197:48847-48866 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | - | tig0026197:48900-48919 | Msa1427670:intron | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | - | tig0026197:49016-49035 | Msa1427670:intron | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | - | tig0026197:49125-49144 | Msa1427670:CDS | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | + | tig0026197:49146-49165 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | - | tig0026197:49146-49165 | Msa1427670:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | - | tig0026197:49150-49169 | Msa1427670:intron | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | + | tig0026197:49420-49439 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | + | tig0026197:49421-49440 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | + | tig0026197:49486-49505 | None:intergenic | 40.0% | |
| ! | CATTTTCATGCTTGGGGTAA+AGG | + | tig0026197:48444-48463 | None:intergenic | 40.0% |
| !! | CACAGTCATTTTCATGCTTG+GGG | + | tig0026197:48450-48469 | None:intergenic | 40.0% |
| !! | CTCACAGTCATTTTCATGCT+TGG | + | tig0026197:48452-48471 | None:intergenic | 40.0% |
| TAGTCGAAGGGAAAAACTCA+TGG | + | tig0026197:48502-48521 | None:intergenic | 40.0% | |
| !! | GTTTGGTGTTGATAGTCGAA+GGG | + | tig0026197:48514-48533 | None:intergenic | 40.0% |
| CCACCATCAATCTCAACTTT+GGG | + | tig0026197:48536-48555 | None:intergenic | 40.0% | |
| ACCACCATCAATCTCAACTT+TGG | + | tig0026197:48537-48556 | None:intergenic | 40.0% | |
| ATATTACTCGGCTATTCCCA+CGG | + | tig0026197:48689-48708 | None:intergenic | 40.0% | |
| !! | GTTGTTAGTTTGTTAGAGGG+AGG | + | tig0026197:48847-48866 | None:intergenic | 40.0% |
| ! | GTGTGTGTGCTTTATTGGAA+TGG | - | tig0026197:48900-48919 | Msa1427670:intron | 40.0% |
| ATCTAAGAGAACACTTGCAC+TGG | - | tig0026197:49016-49035 | Msa1427670:intron | 40.0% | |
| AGGATTGTGACAGATATTCC+TGG | - | tig0026197:49125-49144 | Msa1427670:CDS | 40.0% | |
| AATGTAGCATCTGTTGTTCC+AGG | + | tig0026197:49146-49165 | None:intergenic | 40.0% | |
| GGAACAACAGATGCTACATT+TGG | - | tig0026197:49146-49165 | Msa1427670:CDS | 40.0% | |
| CAACAGATGCTACATTTGGT+AGG | - | tig0026197:49150-49169 | Msa1427670:intron | 40.0% | |
| TGAAGTAAACAGCAGCAACA+GGG | + | tig0026197:49420-49439 | None:intergenic | 40.0% | |
| TTGAAGTAAACAGCAGCAAC+AGG | + | tig0026197:49421-49440 | None:intergenic | 40.0% | |
| CTTTCAAGCTATAGGTGCTA+TGG | + | tig0026197:49486-49505 | None:intergenic | 40.0% | |
| !! | GGTTTGGTGTTGATAGTCGA+AGG | + | tig0026197:48515-48534 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | - | tig0026197:48533-48552 | Msa1427670:three_prime_UTR | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | - | tig0026197:48543-48562 | Msa1427670:three_prime_UTR | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | - | tig0026197:48559-48578 | Msa1427670:three_prime_UTR | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | + | tig0026197:48688-48707 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | - | tig0026197:49347-49366 | Msa1427670:intron | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | - | tig0026197:49348-49367 | Msa1427670:intron | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | + | tig0026197:49481-49500 | None:intergenic | 45.0% |
| !! | GGTTTGGTGTTGATAGTCGA+AGG | + | tig0026197:48515-48534 | None:intergenic | 45.0% |
| CCCAAAGTTGAGATTGATGG+TGG | - | tig0026197:48533-48552 | Msa1427670:three_prime_UTR | 45.0% | |
| !! | AGATTGATGGTGGTGACATG+AGG | - | tig0026197:48543-48562 | Msa1427670:three_prime_UTR | 45.0% |
| CATGAGGTCCTTCTATACAC+TGG | - | tig0026197:48559-48578 | Msa1427670:three_prime_UTR | 45.0% | |
| TATTACTCGGCTATTCCCAC+GGG | + | tig0026197:48688-48707 | None:intergenic | 45.0% | |
| TGACAGCATCACCATCTTCA+AGG | - | tig0026197:49347-49366 | Msa1427670:intron | 45.0% | |
| GACAGCATCACCATCTTCAA+GGG | - | tig0026197:49348-49367 | Msa1427670:intron | 45.0% | |
| ! | AAGCTATAGGTGCTATGGCT+AGG | + | tig0026197:49481-49500 | None:intergenic | 45.0% |
| ATTACTCGGCTATTCCCACG+GGG | + | tig0026197:48687-48706 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | - | tig0026197:48979-48998 | Msa1427670:CDS | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | + | tig0026197:49000-49019 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | + | tig0026197:49458-49477 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | - | tig0026197:49650-49669 | Msa1427670:CDS | 50.0% | |
| ATTACTCGGCTATTCCCACG+GGG | + | tig0026197:48687-48706 | None:intergenic | 50.0% | |
| ATGACAGACCCTGATGTTCC+TGG | - | tig0026197:48979-48998 | Msa1427670:CDS | 50.0% | |
| AGATAAGGATCACTAGGGCC+AGG | + | tig0026197:49000-49019 | None:intergenic | 50.0% | |
| TAGCTAGCGTCTTCTTGCAG+CGG | + | tig0026197:49458-49477 | None:intergenic | 50.0% | |
| ACGTACGTGTGTCGCAGAAA+GGG | - | tig0026197:49650-49669 | Msa1427670:CDS | 50.0% | |
| CACTAGGGCCAGGAACATCA+GGG | + | tig0026197:48990-49009 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | + | tig0026197:48991-49010 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | - | tig0026197:49649-49668 | Msa1427670:CDS | 55.0% | |
| CACTAGGGCCAGGAACATCA+GGG | + | tig0026197:48990-49009 | None:intergenic | 55.0% | |
| TCACTAGGGCCAGGAACATC+AGG | + | tig0026197:48991-49010 | None:intergenic | 55.0% | |
| CACGTACGTGTGTCGCAGAA+AGG | - | tig0026197:49649-49668 | Msa1427670:CDS | 55.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | - | tig0026197:48669-48688 | Msa1427670:CDS | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | - | tig0026197:48670-48689 | Msa1427670:CDS | 60.0% | |
| ACACTATGTGCCTGTCCCCG+TGG | - | tig0026197:48669-48688 | Msa1427670:CDS | 60.0% | |
| CACTATGTGCCTGTCCCCGT+GGG | - | tig0026197:48670-48689 | Msa1427670:CDS | 60.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | + | tig0026197:48682-48701 | None:intergenic | 65.0% | |
| TCGGCTATTCCCACGGGGAC+AGG | + | tig0026197:48682-48701 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026197 | gene | 48318 | 49823 | 48318 | ID=Msa1427670;Name=Msa1427670 |
| tig0026197 | mRNA | 48318 | 49823 | 48318 | ID=Msa1427670-mRNA-1;Parent=Msa1427670;Name=Msa1427670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|1|1|1|1|1|4|349|174 |
| tig0026197 | exon | 48318 | 48887 | 48318 | ID=Msa1427670-mRNA-1:exon:5558;Parent=Msa1427670-mRNA-1 |
| tig0026197 | exon | 48974 | 49014 | 48974 | ID=Msa1427670-mRNA-1:exon:5557;Parent=Msa1427670-mRNA-1 |
| tig0026197 | exon | 49104 | 49165 | 49104 | ID=Msa1427670-mRNA-1:exon:5556;Parent=Msa1427670-mRNA-1 |
| tig0026197 | exon | 49561 | 49823 | 49561 | ID=Msa1427670-mRNA-1:exon:5555;Parent=Msa1427670-mRNA-1 |
| tig0026197 | five_prime_UTR | 49762 | 49823 | 49762 | ID=Msa1427670-mRNA-1:five_prime_utr;Parent=Msa1427670-mRNA-1 |
| tig0026197 | CDS | 49561 | 49761 | 49561 | ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1 |
| tig0026197 | CDS | 49104 | 49165 | 49104 | ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1 |
| tig0026197 | CDS | 48974 | 49014 | 48974 | ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1 |
| tig0026197 | CDS | 48667 | 48887 | 48667 | ID=Msa1427670-mRNA-1:cds;Parent=Msa1427670-mRNA-1 |
| tig0026197 | three_prime_UTR | 48318 | 48666 | 48318 | ID=Msa1427670-mRNA-1:three_prime_utr;Parent=Msa1427670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
