Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917880 | XP_024641248.2 | 75.439 | 741 | 181 | 1 | 31 | 770 | 16 | 756 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917880 | sp|Q9SY66|FRS11_ARATH | 45.710 | 676 | 352 | 8 | 30 | 697 | 11 | 679 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0917880 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028700 | Msa0917880 | 0.833827 | 4.265019e-56 | -8.615850e-47 |
| Msa0032330 | Msa0917880 | 0.852420 | 4.671921e-61 | -8.615850e-47 |
| Msa0062860 | Msa0917880 | 0.855128 | 7.767011e-62 | -8.615850e-47 |
| Msa0615740 | Msa0917880 | 0.811809 | 5.812778e-51 | -8.615850e-47 |
| Msa0661650 | Msa0917880 | 0.803071 | 4.151931e-49 | -8.615850e-47 |
| Msa0701010 | Msa0917880 | 0.830810 | 2.381338e-55 | -8.615850e-47 |
| Msa0738500 | Msa0917880 | 0.830463 | 2.895829e-55 | -8.615850e-47 |
| Msa0178960 | Msa0917880 | 0.916331 | 2.025538e-85 | -8.615850e-47 |
| Msa0178970 | Msa0917880 | 0.919857 | 2.664330e-87 | -8.615850e-47 |
| Msa0180500 | Msa0917880 | 0.809893 | 1.510712e-50 | -8.615850e-47 |
| Msa0416650 | Msa0917880 | 0.801986 | 6.949775e-49 | -8.615850e-47 |
| Msa0424320 | Msa0917880 | 0.814560 | 1.447656e-51 | -8.615850e-47 |
| Msa0278110 | Msa0917880 | 0.800811 | 1.209811e-48 | -8.615850e-47 |
| Msa0317290 | Msa0917880 | 0.841915 | 3.556489e-58 | -8.615850e-47 |
| Msa0350990 | Msa0917880 | 0.802012 | 6.866358e-49 | -8.615850e-47 |
| Msa0516750 | Msa0917880 | 0.859387 | 4.283789e-63 | -8.615850e-47 |
| Msa0523940 | Msa0917880 | 0.827082 | 1.903636e-54 | -8.615850e-47 |
| Msa0842650 | Msa0917880 | 0.800460 | 1.426588e-48 | -8.615850e-47 |
| Msa0849030 | Msa0917880 | 0.813643 | 2.307599e-51 | -8.615850e-47 |
| Msa0877250 | Msa0917880 | 0.832453 | 9.373287e-56 | -8.615850e-47 |
| Msa0917880 | Msa0980090 | 0.853029 | 3.129076e-61 | -8.615850e-47 |
| Msa0917880 | Msa1014540 | 0.802561 | 5.292487e-49 | -8.615850e-47 |
| Msa0917880 | Msa1085740 | 0.833937 | 4.001622e-56 | -8.615850e-47 |
| Msa0917880 | Msa1107620 | 0.803101 | 4.093048e-49 | -8.615850e-47 |
| Msa0917880 | Msa1156020 | 0.886836 | 2.417375e-72 | -8.615850e-47 |
| Msa0917880 | Msa1244250 | 0.824798 | 6.639997e-54 | -8.615850e-47 |
| Msa0917880 | Msa1249490 | 0.812886 | 3.383396e-51 | -8.615850e-47 |
| Msa0917880 | Msa1284680 | 0.812301 | 4.541135e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917880 | MtrunA17_Chr1g0198761 | 75.439 | 741 | 181 | 1 | 31 | 770 | 16 | 756 | 0.0 | 1182 |
| Msa0917880 | MtrunA17_Chr5g0431001 | 92.116 | 482 | 38 | 0 | 1 | 482 | 1 | 482 | 0.0 | 931 |
| Msa0917880 | MtrunA17_Chr2g0276841 | 47.360 | 625 | 318 | 5 | 60 | 681 | 69 | 685 | 0.0 | 625 |
| Msa0917880 | MtrunA17_Chr2g0294841 | 42.454 | 709 | 380 | 7 | 60 | 747 | 44 | 745 | 0.0 | 603 |
| Msa0917880 | MtrunA17_Chr2g0290391 | 45.807 | 644 | 312 | 8 | 60 | 683 | 50 | 676 | 0.0 | 571 |
| Msa0917880 | MtrunA17_Chr1g0202341 | 29.326 | 682 | 443 | 15 | 13 | 677 | 10 | 669 | 4.09e-84 | 281 |
| Msa0917880 | MtrunA17_Chr5g0448761 | 31.122 | 588 | 381 | 9 | 61 | 634 | 60 | 637 | 1.02e-80 | 275 |
| Msa0917880 | MtrunA17_Chr2g0296781 | 28.759 | 685 | 431 | 20 | 67 | 724 | 3 | 657 | 1.66e-74 | 256 |
| Msa0917880 | MtrunA17_Chr3g0080351 | 30.324 | 587 | 351 | 18 | 61 | 627 | 76 | 624 | 1.70e-74 | 258 |
| Msa0917880 | MtrunA17_Chr2g0329031 | 28.546 | 564 | 367 | 12 | 67 | 621 | 20 | 556 | 8.18e-70 | 244 |
| Msa0917880 | MtrunA17_Chr6g0477261 | 30.909 | 550 | 342 | 15 | 194 | 718 | 4 | 540 | 4.01e-68 | 237 |
| Msa0917880 | MtrunA17_Chr6g0458391 | 27.778 | 576 | 379 | 11 | 58 | 627 | 222 | 766 | 1.52e-66 | 235 |
| Msa0917880 | MtrunA17_Chr1g0203051 | 27.273 | 605 | 386 | 14 | 28 | 613 | 52 | 621 | 1.72e-66 | 232 |
| Msa0917880 | MtrunA17_Chr8g0363841 | 26.528 | 671 | 440 | 16 | 62 | 699 | 18 | 668 | 6.22e-66 | 231 |
| Msa0917880 | MtrunA17_Chr1g0207551 | 29.167 | 576 | 380 | 12 | 61 | 627 | 34 | 590 | 4.05e-65 | 232 |
| Msa0917880 | MtrunA17_Chr5g0441581 | 27.176 | 655 | 429 | 19 | 86 | 719 | 51 | 678 | 1.20e-64 | 228 |
| Msa0917880 | MtrunA17_Chr2g0287651 | 28.546 | 564 | 370 | 13 | 53 | 604 | 68 | 610 | 6.65e-64 | 229 |
| Msa0917880 | MtrunA17_Chr3g0082121 | 29.617 | 574 | 360 | 17 | 67 | 627 | 49 | 591 | 3.55e-62 | 221 |
| Msa0917880 | MtrunA17_Chr5g0440451 | 25.529 | 662 | 431 | 15 | 61 | 695 | 43 | 669 | 5.74e-61 | 221 |
| Msa0917880 | MtrunA17_Chr2g0287061 | 26.780 | 646 | 383 | 17 | 40 | 671 | 165 | 734 | 9.77e-60 | 216 |
| Msa0917880 | MtrunA17_Chr1g0203721 | 26.334 | 581 | 389 | 12 | 64 | 627 | 66 | 624 | 2.04e-58 | 214 |
| Msa0917880 | MtrunA17_Chr2g0324011 | 26.552 | 580 | 389 | 10 | 61 | 625 | 10 | 567 | 1.92e-55 | 201 |
| Msa0917880 | MtrunA17_Chr5g0448511 | 30.688 | 378 | 256 | 3 | 249 | 621 | 16 | 392 | 3.76e-55 | 199 |
| Msa0917880 | MtrunA17_Chr1g0196541 | 26.644 | 578 | 376 | 14 | 67 | 623 | 3 | 553 | 3.85e-55 | 202 |
| Msa0917880 | MtrunA17_Chr5g0430921 | 100.000 | 85 | 0 | 0 | 680 | 764 | 1 | 85 | 1.22e-54 | 182 |
| Msa0917880 | MtrunA17_Chr3g0118611 | 29.245 | 424 | 289 | 7 | 203 | 621 | 79 | 496 | 2.93e-52 | 194 |
| Msa0917880 | MtrunA17_Chr2g0291581 | 25.619 | 687 | 430 | 17 | 38 | 685 | 43 | 687 | 9.34e-52 | 192 |
| Msa0917880 | MtrunA17_Chr3g0081281 | 86.957 | 92 | 12 | 0 | 210 | 301 | 2 | 93 | 2.44e-48 | 165 |
| Msa0917880 | MtrunA17_Chr2g0291591 | 24.296 | 568 | 373 | 14 | 20 | 565 | 25 | 557 | 2.02e-39 | 154 |
| Msa0917880 | MtrunA17_Chr1g0164591 | 34.314 | 204 | 132 | 2 | 262 | 464 | 106 | 308 | 2.08e-35 | 137 |
| Msa0917880 | MtrunA17_Chr7g0258861 | 25.338 | 296 | 195 | 6 | 61 | 347 | 10 | 288 | 1.89e-20 | 92.8 |
| Msa0917880 | MtrunA17_Chr2g0308841 | 25.974 | 231 | 161 | 5 | 418 | 643 | 14 | 239 | 1.32e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917880 | AT1G10240.2 | 45.710 | 676 | 352 | 8 | 30 | 697 | 11 | 679 | 0.0 | 620 |
| Msa0917880 | AT1G10240.1 | 45.710 | 676 | 352 | 8 | 30 | 697 | 11 | 679 | 0.0 | 620 |
| Msa0917880 | AT5G28530.3 | 42.033 | 659 | 356 | 6 | 31 | 678 | 27 | 670 | 0.0 | 550 |
| Msa0917880 | AT5G28530.2 | 42.033 | 659 | 356 | 6 | 31 | 678 | 27 | 670 | 0.0 | 550 |
| Msa0917880 | AT5G28530.1 | 41.882 | 659 | 361 | 6 | 31 | 678 | 27 | 674 | 0.0 | 548 |
| Msa0917880 | AT5G28530.5 | 38.213 | 649 | 332 | 8 | 31 | 678 | 27 | 607 | 4.99e-151 | 455 |
| Msa0917880 | AT5G28530.4 | 38.059 | 649 | 337 | 8 | 31 | 678 | 27 | 611 | 2.24e-150 | 453 |
| Msa0917880 | AT4G38180.1 | 31.818 | 572 | 372 | 7 | 61 | 625 | 73 | 633 | 4.66e-84 | 284 |
| Msa0917880 | AT4G15090.1 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 4.81e-81 | 276 |
| Msa0917880 | AT4G15090.5 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 4.81e-81 | 276 |
| Msa0917880 | AT4G15090.3 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 4.81e-81 | 276 |
| Msa0917880 | AT4G15090.2 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 4.81e-81 | 276 |
| Msa0917880 | AT4G15090.4 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 4.81e-81 | 276 |
| Msa0917880 | AT1G76320.3 | 27.807 | 561 | 375 | 12 | 67 | 621 | 3 | 539 | 1.22e-64 | 228 |
| Msa0917880 | AT1G76320.1 | 27.807 | 561 | 375 | 12 | 67 | 621 | 3 | 539 | 1.82e-64 | 229 |
| Msa0917880 | AT1G76320.4 | 27.807 | 561 | 375 | 12 | 67 | 621 | 3 | 539 | 1.82e-64 | 229 |
| Msa0917880 | AT1G76320.2 | 27.807 | 561 | 375 | 12 | 67 | 621 | 3 | 539 | 1.95e-64 | 229 |
| Msa0917880 | AT3G22170.2 | 26.636 | 642 | 403 | 21 | 61 | 679 | 70 | 666 | 8.31e-64 | 229 |
| Msa0917880 | AT3G22170.1 | 26.636 | 642 | 403 | 21 | 61 | 679 | 70 | 666 | 8.31e-64 | 229 |
| Msa0917880 | AT3G06250.2 | 25.913 | 575 | 359 | 12 | 61 | 627 | 190 | 705 | 2.26e-56 | 207 |
| Msa0917880 | AT3G06250.1 | 25.913 | 575 | 359 | 12 | 61 | 627 | 190 | 705 | 2.26e-56 | 207 |
| Msa0917880 | AT3G06250.3 | 25.913 | 575 | 359 | 12 | 61 | 627 | 190 | 705 | 2.26e-56 | 207 |
| Msa0917880 | AT2G27110.2 | 26.324 | 623 | 405 | 17 | 61 | 675 | 49 | 625 | 2.77e-55 | 204 |
| Msa0917880 | AT2G27110.1 | 26.324 | 623 | 405 | 17 | 61 | 675 | 49 | 625 | 2.77e-55 | 204 |
| Msa0917880 | AT5G18960.2 | 25.907 | 579 | 357 | 13 | 61 | 627 | 211 | 729 | 9.90e-55 | 202 |
| Msa0917880 | AT5G18960.1 | 25.907 | 579 | 357 | 13 | 61 | 627 | 211 | 729 | 9.90e-55 | 202 |
| Msa0917880 | AT2G27110.3 | 29.279 | 444 | 295 | 11 | 240 | 675 | 48 | 480 | 1.79e-52 | 194 |
| Msa0917880 | AT4G38170.1 | 30.256 | 390 | 261 | 6 | 244 | 627 | 16 | 400 | 5.81e-48 | 179 |
| Msa0917880 | AT2G32250.5 | 25.227 | 440 | 317 | 5 | 256 | 691 | 180 | 611 | 8.22e-47 | 179 |
| Msa0917880 | AT2G32250.2 | 25.227 | 440 | 317 | 5 | 256 | 691 | 180 | 611 | 1.11e-46 | 179 |
| Msa0917880 | AT2G32250.4 | 25.227 | 440 | 317 | 5 | 256 | 691 | 180 | 611 | 1.11e-46 | 179 |
| Msa0917880 | AT2G32250.7 | 25.227 | 440 | 317 | 5 | 256 | 691 | 139 | 570 | 1.14e-46 | 178 |
| Msa0917880 | AT2G32250.8 | 25.227 | 440 | 317 | 5 | 256 | 691 | 139 | 570 | 1.18e-46 | 178 |
| Msa0917880 | AT2G32250.6 | 25.227 | 440 | 317 | 5 | 256 | 691 | 180 | 611 | 1.21e-46 | 179 |
| Msa0917880 | AT2G32250.1 | 25.227 | 440 | 317 | 5 | 256 | 691 | 180 | 611 | 1.21e-46 | 179 |
| Msa0917880 | AT2G32250.3 | 25.227 | 440 | 317 | 5 | 256 | 691 | 180 | 611 | 1.21e-46 | 179 |
| Msa0917880 | AT4G19990.3 | 26.451 | 586 | 358 | 17 | 63 | 625 | 23 | 558 | 4.06e-46 | 176 |
| Msa0917880 | AT4G19990.4 | 26.451 | 586 | 358 | 17 | 63 | 625 | 23 | 558 | 4.06e-46 | 176 |
| Msa0917880 | AT4G19990.5 | 26.451 | 586 | 358 | 17 | 63 | 625 | 23 | 558 | 4.58e-46 | 176 |
| Msa0917880 | AT4G19990.7 | 26.451 | 586 | 358 | 17 | 63 | 625 | 37 | 572 | 5.31e-46 | 176 |
| Msa0917880 | AT4G19990.6 | 26.451 | 586 | 358 | 17 | 63 | 625 | 23 | 558 | 6.42e-46 | 176 |
| Msa0917880 | AT4G19990.2 | 26.451 | 586 | 358 | 17 | 63 | 625 | 23 | 558 | 6.42e-46 | 176 |
| Msa0917880 | AT1G52520.1 | 26.589 | 598 | 361 | 22 | 60 | 624 | 84 | 636 | 1.63e-44 | 171 |
| Msa0917880 | AT4G19990.1 | 25.746 | 536 | 333 | 14 | 112 | 625 | 9 | 501 | 6.41e-42 | 163 |
| Msa0917880 | AT1G80010.1 | 24.228 | 615 | 365 | 20 | 61 | 624 | 95 | 659 | 7.21e-40 | 157 |
| Msa0917880 | AT3G59470.3 | 36.283 | 113 | 61 | 4 | 61 | 173 | 70 | 171 | 5.75e-11 | 64.3 |
| Msa0917880 | AT3G59470.1 | 36.283 | 113 | 61 | 4 | 61 | 173 | 70 | 171 | 5.75e-11 | 64.3 |
| Msa0917880 | AT3G59470.2 | 36.283 | 113 | 61 | 4 | 61 | 173 | 82 | 183 | 6.05e-11 | 64.3 |
Find 131 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTACATGACTAGATTT+TGG | 0.131548 | 6_2:-43513789 | None:intergenic |
| TCTTTACCCATCGTAAATTT+TGG | 0.158198 | 6_2:+43513157 | Msa0917880:CDS |
| CCAATTAAAACTTACTTATT+AGG | 0.177601 | 6_2:-43514188 | None:intergenic |
| ATGAGATGCCTCTTGGAATA+TGG | 0.196486 | 6_2:+43512656 | Msa0917880:CDS |
| TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 6_2:+43512234 | Msa0917880:CDS |
| TCGAATTAGAGACTGAAATT+TGG | 0.209475 | 6_2:-43513832 | None:intergenic |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 6_2:-43513945 | None:intergenic |
| AACGTCATAGTCATCATTAT+TGG | 0.231503 | 6_2:-43513988 | None:intergenic |
| ACAGTTTGATCAAAACTATT+TGG | 0.236534 | 6_2:-43514339 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 6_2:-43513511 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 6_2:+43511968 | Msa0917880:CDS |
| AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 6_2:-43513274 | None:intergenic |
| TTCCTTCGCATGGGCTATAA+AGG | 0.299718 | 6_2:+43512747 | Msa0917880:CDS |
| ATTCGCGCATATGAAGCTTT+TGG | 0.302502 | 6_2:+43512592 | Msa0917880:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 6_2:+43513918 | Msa0917880:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 6_2:+43513953 | Msa0917880:CDS |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 6_2:-43514059 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 6_2:+43512436 | Msa0917880:CDS |
| AATTGATGAAAGTAACAAAT+TGG | 0.343540 | 6_2:+43512540 | Msa0917880:CDS |
| ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 6_2:-43512346 | None:intergenic |
| CGAATTAGAGACTGAAATTT+GGG | 0.344971 | 6_2:-43513831 | None:intergenic |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 6_2:+43512555 | Msa0917880:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.348150 | 6_2:-43512525 | None:intergenic |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 6_2:+43512562 | Msa0917880:CDS |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 6_2:+43512554 | Msa0917880:CDS |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 6_2:-43514081 | None:intergenic |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 6_2:+43513839 | Msa0917880:CDS |
| ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 6_2:+43513111 | Msa0917880:CDS |
| AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 6_2:+43513110 | Msa0917880:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 6_2:+43511779 | Msa0917880:CDS |
| AGTGAATTAGACAGATGAAT+TGG | 0.402311 | 6_2:+43514394 | Msa0917880:three_prime_UTR |
| GCAATGGCTTCTTTAATTGA+AGG | 0.406562 | 6_2:-43512919 | None:intergenic |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 6_2:-43511809 | None:intergenic |
| TCCATTGATCCATCTTGCTT+CGG | 0.415346 | 6_2:+43511445 | Msa0917880:five_prime_UTR |
| ATACTAGTAATTACACAGTT+TGG | 0.415911 | 6_2:-43514524 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 6_2:+43512047 | Msa0917880:CDS |
| TTTGCTGGAATGACAACAAC+AGG | 0.418779 | 6_2:+43513207 | Msa0917880:CDS |
| GTCATCTTGAAATAGTGAAT+TGG | 0.425948 | 6_2:+43514303 | Msa0917880:exon |
| AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 6_2:+43513105 | Msa0917880:CDS |
| GTAGTTACTAAGAGAACAAT+TGG | 0.430532 | 6_2:+43512175 | Msa0917880:CDS |
| TGAGATGCCTCTTGGAATAT+GGG | 0.433904 | 6_2:+43512657 | Msa0917880:CDS |
| TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 6_2:+43513176 | Msa0917880:CDS |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 6_2:-43513601 | None:intergenic |
| CTTTAAACATGAGTTTCATA+AGG | 0.439926 | 6_2:+43513041 | Msa0917880:CDS |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 6_2:-43513471 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 6_2:-43514107 | None:intergenic |
| AACCGTTATGAGATGCCTCT+TGG | 0.448749 | 6_2:+43512649 | Msa0917880:CDS |
| AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 6_2:+43513875 | Msa0917880:CDS |
| CATGTAATAAACTGCAATGA+TGG | 0.453622 | 6_2:+43513801 | Msa0917880:CDS |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 6_2:+43512076 | Msa0917880:CDS |
| CAGATAGCGGGAAAGGGTAA+AGG | 0.460958 | 6_2:-43511336 | None:intergenic |
| ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 6_2:-43512298 | None:intergenic |
| CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 6_2:+43513116 | Msa0917880:CDS |
| ATAACGGTTTATTCTATATG+TGG | 0.472493 | 6_2:-43512635 | None:intergenic |
| AACTGGGCAGATAGCGGGAA+AGG | 0.478957 | 6_2:-43511343 | None:intergenic |
| TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 6_2:-43512338 | None:intergenic |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 6_2:+43514029 | Msa0917880:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 6_2:+43514275 | Msa0917880:intron |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 6_2:-43513504 | None:intergenic |
| AGAAGATTTCTTCCTTCGCA+TGG | 0.503824 | 6_2:+43512737 | Msa0917880:CDS |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 6_2:+43514095 | Msa0917880:CDS |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 6_2:-43512521 | None:intergenic |
| CTTTCTCGTCTAAATCGAAA+AGG | 0.511939 | 6_2:-43513756 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 6_2:+43514044 | Msa0917880:CDS |
| AGATAGCGGGAAAGGGTAAA+GGG | 0.516008 | 6_2:-43511335 | None:intergenic |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 6_2:+43513393 | Msa0917880:CDS |
| TTTAATTGAAGGATCTTGAT+CGG | 0.518039 | 6_2:-43512908 | None:intergenic |
| TGGTAATAATAAACTATAGC+AGG | 0.519610 | 6_2:-43514504 | None:intergenic |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 6_2:-43512280 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 6_2:+43511750 | Msa0917880:CDS |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 6_2:+43512102 | Msa0917880:CDS |
| TGGGTTGGTGTTGATAATCA+TGG | 0.529258 | 6_2:+43512676 | Msa0917880:CDS |
| ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 6_2:+43512319 | Msa0917880:CDS |
| TTCCAAGAGGCATCTCATAA+CGG | 0.531646 | 6_2:-43512651 | None:intergenic |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 6_2:+43513591 | Msa0917880:CDS |
| TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 6_2:+43513092 | Msa0917880:CDS |
| ACCGAAGCAAGATGGATCAA+TGG | 0.546537 | 6_2:-43511446 | None:intergenic |
| ATGTTATTGACTCGAGGCAA+GGG | 0.551467 | 6_2:-43511881 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 6_2:+43511780 | Msa0917880:CDS |
| GAAGATTTCTTCCTTCGCAT+GGG | 0.556681 | 6_2:+43512738 | Msa0917880:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 6_2:+43514270 | Msa0917880:intron |
| AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 6_2:-43513181 | None:intergenic |
| CGAGTCAATAACATTGATGA+GGG | 0.562576 | 6_2:+43511890 | Msa0917880:CDS |
| GTTTGGCAATTCCATTGCAA+TGG | 0.567761 | 6_2:-43512935 | None:intergenic |
| GGAAAATGTGTTGTAATCTG+AGG | 0.568974 | 6_2:-43513450 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 6_2:+43512153 | Msa0917880:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 6_2:-43511773 | None:intergenic |
| GTGTCTGAAGAGAATCCATC+GGG | 0.572540 | 6_2:+43512034 | Msa0917880:CDS |
| ACTGGGCAGATAGCGGGAAA+GGG | 0.574204 | 6_2:-43511342 | None:intergenic |
| AATTAAAGAAGCCATTGCAA+TGG | 0.576797 | 6_2:+43512924 | Msa0917880:CDS |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 6_2:+43513401 | Msa0917880:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 6_2:+43512246 | Msa0917880:CDS |
| AATGTTATTGACTCGAGGCA+AGG | 0.583411 | 6_2:-43511882 | None:intergenic |
| TACTAAGAGAACAATTGGCA+TGG | 0.583498 | 6_2:+43512180 | Msa0917880:CDS |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 6_2:+43511784 | Msa0917880:CDS |
| TTGTCGCAAAGCTGTCAAGT+TGG | 0.589381 | 6_2:+43512986 | Msa0917880:CDS |
| TAGAGACTGAAATTTGGGAG+AGG | 0.592397 | 6_2:-43513826 | None:intergenic |
| TCATCATATCTCGAACCTAG+TGG | 0.597376 | 6_2:-43513018 | None:intergenic |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 6_2:-43511774 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 6_2:+43512067 | Msa0917880:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 6_2:-43512049 | None:intergenic |
| TACCTTTATAGCCCATGCGA+AGG | 0.601051 | 6_2:-43512749 | None:intergenic |
| ACATGTGATTGATTTGGAAG+CGG | 0.601602 | 6_2:+43513959 | Msa0917880:CDS |
| TGTGTCTGAAGAGAATCCAT+CGG | 0.605132 | 6_2:+43512033 | Msa0917880:CDS |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 6_2:+43512113 | Msa0917880:CDS |
| CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 6_2:-43512243 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 6_2:+43514048 | Msa0917880:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 6_2:-43511779 | None:intergenic |
| CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 6_2:-43513164 | None:intergenic |
| TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 6_2:-43513163 | None:intergenic |
| ATGCCTCTTGGAATATGGGT+TGG | 0.616141 | 6_2:+43512661 | Msa0917880:CDS |
| TCGAGTCAATAACATTGATG+AGG | 0.618775 | 6_2:+43511889 | Msa0917880:CDS |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 6_2:+43512070 | Msa0917880:CDS |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 6_2:+43511783 | Msa0917880:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 6_2:+43512048 | Msa0917880:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 6_2:-43514176 | None:intergenic |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 6_2:+43514098 | Msa0917880:CDS |
| AGTGAATTGGACAGATGAAG+CGG | 0.644693 | 6_2:+43514316 | Msa0917880:three_prime_UTR |
| AGTCAATAACATTGATGAGG+GGG | 0.646350 | 6_2:+43511892 | Msa0917880:CDS |
| CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 6_2:-43512345 | None:intergenic |
| TCATCAATGTTATTGACTCG+AGG | 0.652221 | 6_2:-43511887 | None:intergenic |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 6_2:+43514047 | Msa0917880:CDS |
| GCAGCAATTGAAGCTGACAA+TGG | 0.657455 | 6_2:+43513555 | Msa0917880:CDS |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 6_2:-43512664 | None:intergenic |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 6_2:+43514271 | Msa0917880:intron |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 6_2:+43512498 | Msa0917880:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 6_2:+43513594 | Msa0917880:CDS |
| GAGTCAATAACATTGATGAG+GGG | 0.693357 | 6_2:+43511891 | Msa0917880:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 6_2:+43514049 | Msa0917880:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 6_2:-43513487 | None:intergenic |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 6_2:-43514089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAATAAAATAGAATTT+GGG | - | chr6_2:43511654-43511673 | None:intergenic | 10.0% |
| !! | ATCATAAATAAAATAGAATT+TGG | - | chr6_2:43511655-43511674 | None:intergenic | 10.0% |
| !!! | TAATATTAACTGTATTTTTA+TGG | + | chr6_2:43514248-43514267 | Msa0917880:intron | 10.0% |
| !! | TTAGTTAAGAATTATATACA+TGG | - | chr6_2:43511599-43511618 | None:intergenic | 15.0% |
| !! | CATAAATAAAATAGAATTTG+GGG | - | chr6_2:43511653-43511672 | None:intergenic | 15.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | + | chr6_2:43512430-43512449 | Msa0917880:CDS | 15.0% |
| !! | AATATCATCATAAAGATAAA+AGG | + | chr6_2:43513918-43513937 | Msa0917880:CDS | 15.0% |
| !!! | GTTTGTTTCTTTTCTTTTAA+TGG | + | chr6_2:43511529-43511548 | Msa0917880:intron | 20.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | + | chr6_2:43511968-43511987 | Msa0917880:CDS | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | + | chr6_2:43511981-43512000 | Msa0917880:CDS | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | - | chr6_2:43512409-43512428 | None:intergenic | 20.0% |
| !! | AATTGATGAAAGTAACAAAT+TGG | + | chr6_2:43512540-43512559 | Msa0917880:CDS | 20.0% |
| !!! | CATGGAAATTCAATTTTTTT+TGG | + | chr6_2:43512694-43512713 | Msa0917880:CDS | 20.0% |
| !!! | TGATTGTTATATTTTTGTGT+AGG | + | chr6_2:43513359-43513378 | Msa0917880:intron | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | - | chr6_2:43513791-43513810 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | - | chr6_2:43513792-43513811 | None:intergenic | 20.0% |
| !! | CCAATTAAAACTTACTTATT+AGG | - | chr6_2:43514191-43514210 | None:intergenic | 20.0% |
| !!! | CCTAATAAGTAAGTTTTAAT+TGG | + | chr6_2:43514188-43514207 | Msa0917880:intron | 20.0% |
| !!! | TGTGTAATTAGTATATTTTG+TGG | + | chr6_2:43514438-43514457 | Msa0917880:three_prime_UTR | 20.0% |
| ! | TTGAGAACATAATATTTACC+TGG | - | chr6_2:43511485-43511504 | None:intergenic | 25.0% |
| ! | AACACAAACTTAGCTAATTT+GGG | - | chr6_2:43511571-43511590 | None:intergenic | 25.0% |
| ! | AAACACAAACTTAGCTAATT+TGG | - | chr6_2:43511572-43511591 | None:intergenic | 25.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | - | chr6_2:43511920-43511939 | None:intergenic | 25.0% |
| !! | ATACTATTATTGTCTAAAGC+CGG | + | chr6_2:43512319-43512338 | Msa0917880:CDS | 25.0% |
| ! | CTTGAGTTAGAGAAAAAAAT+AGG | + | chr6_2:43512370-43512389 | Msa0917880:CDS | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | + | chr6_2:43512436-43512455 | Msa0917880:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | - | chr6_2:43512524-43512543 | None:intergenic | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | - | chr6_2:43512528-43512547 | None:intergenic | 25.0% |
| ! | ATAACGGTTTATTCTATATG+TGG | - | chr6_2:43512638-43512657 | None:intergenic | 25.0% |
| ! | TTTAATTGAAGGATCTTGAT+CGG | - | chr6_2:43512911-43512930 | None:intergenic | 25.0% |
| ! | CTTTAAACATGAGTTTCATA+AGG | + | chr6_2:43513041-43513060 | Msa0917880:CDS | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | - | chr6_2:43513277-43513296 | None:intergenic | 25.0% |
| !!! | TGTTATATTTTTGTGTAGGT+TGG | + | chr6_2:43513363-43513382 | Msa0917880:intron | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | + | chr6_2:43513663-43513682 | Msa0917880:CDS | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | + | chr6_2:43514021-43514040 | Msa0917880:CDS | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | + | chr6_2:43514145-43514164 | Msa0917880:CDS | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | - | chr6_2:43514149-43514168 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | + | chr6_2:43514260-43514279 | Msa0917880:intron | 25.0% |
| ! | ACAGTTTGATCAAAACTATT+TGG | - | chr6_2:43514342-43514361 | None:intergenic | 25.0% |
| !! | TGTGTAATTAGTGAATTTTG+TGG | + | chr6_2:43514359-43514378 | Msa0917880:three_prime_UTR | 25.0% |
| ! | TGGTAATAATAAACTATAGC+AGG | - | chr6_2:43514507-43514526 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTACACAGTT+TGG | - | chr6_2:43514527-43514546 | None:intergenic | 25.0% |
| ! | ACAAAGTGAATGAGCTATTT+TGG | - | chr6_2:43511403-43511422 | None:intergenic | 30.0% |
| AATAGCTCATTCACTTTGTT+CGG | + | chr6_2:43511404-43511423 | Msa0917880:intron | 30.0% | |
| ACACAAACTTAGCTAATTTG+GGG | - | chr6_2:43511570-43511589 | None:intergenic | 30.0% | |
| TCAAATATTTGCCCTTCAAA+AGG | - | chr6_2:43511812-43511831 | None:intergenic | 30.0% | |
| GTAGTTACTAAGAGAACAAT+TGG | + | chr6_2:43512175-43512194 | Msa0917880:CDS | 30.0% | |
| AATTGGCATGGAGAAAAAAT+GGG | + | chr6_2:43512192-43512211 | Msa0917880:CDS | 30.0% | |
| TTAGAGAAAAAAATAGGCAC+AGG | + | chr6_2:43512376-43512395 | Msa0917880:CDS | 30.0% | |
| ACAAATTGGAGCATATTGTT+TGG | + | chr6_2:43512554-43512573 | Msa0917880:CDS | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | + | chr6_2:43512555-43512574 | Msa0917880:CDS | 30.0% | |
| ! | ATTTTCCTTTCACAAAAGCT+AGG | - | chr6_2:43512870-43512889 | None:intergenic | 30.0% |
| ! | TGATCGGTAAGAATTGTTTT+TGG | - | chr6_2:43512895-43512914 | None:intergenic | 30.0% |
| AATTAAAGAAGCCATTGCAA+TGG | + | chr6_2:43512924-43512943 | Msa0917880:CDS | 30.0% | |
| ! | CAAAATGCATGTTTTGTGTT+TGG | - | chr6_2:43512955-43512974 | None:intergenic | 30.0% |
| ! | CAAAACATGCATTTTGCATA+TGG | + | chr6_2:43512959-43512978 | Msa0917880:CDS | 30.0% |
| ! | TCTTTACCCATCGTAAATTT+TGG | + | chr6_2:43513157-43513176 | Msa0917880:CDS | 30.0% |
| ! | CTTTACCCATCGTAAATTTT+GGG | + | chr6_2:43513158-43513177 | Msa0917880:CDS | 30.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | - | chr6_2:43513184-43513203 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | + | chr6_2:43513192-43513211 | Msa0917880:CDS | 30.0% |
| GTCAAAATTAGAAATCAAGC+TGG | + | chr6_2:43513393-43513412 | Msa0917880:CDS | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | - | chr6_2:43513744-43513763 | None:intergenic | 30.0% |
| CATGTAATAAACTGCAATGA+TGG | + | chr6_2:43513801-43513820 | Msa0917880:CDS | 30.0% | |
| CGAATTAGAGACTGAAATTT+GGG | - | chr6_2:43513834-43513853 | None:intergenic | 30.0% | |
| TCGAATTAGAGACTGAAATT+TGG | - | chr6_2:43513835-43513854 | None:intergenic | 30.0% | |
| ! | GATATTTTCTAACTCTCTTG+TGG | - | chr6_2:43513904-43513923 | None:intergenic | 30.0% |
| TCAAGAACATGTGATTGATT+TGG | + | chr6_2:43513953-43513972 | Msa0917880:CDS | 30.0% | |
| AACGTCATAGTCATCATTAT+TGG | - | chr6_2:43513991-43514010 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTTTTTGAAACAAC+AGG | - | chr6_2:43514020-43514039 | None:intergenic | 30.0% |
| !! | CCTGTTGTTTCAAAAACAAA+AGG | + | chr6_2:43514017-43514036 | Msa0917880:CDS | 30.0% |
| TACTTATTAGGAGATTGAGA+AGG | - | chr6_2:43514179-43514198 | None:intergenic | 30.0% | |
| GTCATCTTGAAATAGTGAAT+TGG | + | chr6_2:43514303-43514322 | Msa0917880:exon | 30.0% | |
| ! | GTAATTAGTGAATTTTGTGG+CGG | + | chr6_2:43514362-43514381 | Msa0917880:three_prime_UTR | 30.0% |
| AGTGAATTAGACAGATGAAT+TGG | + | chr6_2:43514394-43514413 | Msa0917880:three_prime_UTR | 30.0% | |
| !! | GATTCTTTTGGTTGGAAACT+GGG | - | chr6_2:43511362-43511381 | None:intergenic | 35.0% |
| !! | TGATTCTTTTGGTTGGAAAC+TGG | - | chr6_2:43511363-43511382 | None:intergenic | 35.0% |
| ! | TTGAGCAGTCTTGATTCTTT+TGG | - | chr6_2:43511374-43511393 | None:intergenic | 35.0% |
| !! | AAGTGAATGAGCTATTTTGG+AGG | - | chr6_2:43511400-43511419 | None:intergenic | 35.0% |
| AACAAACAATGAGTGCAAGA+TGG | - | chr6_2:43511516-43511535 | None:intergenic | 35.0% | |
| CACAAACTTAGCTAATTTGG+GGG | - | chr6_2:43511569-43511588 | None:intergenic | 35.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | + | chr6_2:43511750-43511769 | Msa0917880:CDS | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | + | chr6_2:43511780-43511799 | Msa0917880:CDS | 35.0% | |
| !! | TCATCAATGTTATTGACTCG+AGG | - | chr6_2:43511890-43511909 | None:intergenic | 35.0% |
| TCGAGTCAATAACATTGATG+AGG | + | chr6_2:43511889-43511908 | Msa0917880:CDS | 35.0% | |
| CGAGTCAATAACATTGATGA+GGG | + | chr6_2:43511890-43511909 | Msa0917880:CDS | 35.0% | |
| GAGTCAATAACATTGATGAG+GGG | + | chr6_2:43511891-43511910 | Msa0917880:CDS | 35.0% | |
| AGTCAATAACATTGATGAGG+GGG | + | chr6_2:43511892-43511911 | Msa0917880:CDS | 35.0% | |
| CTGTTGAAGTGGAAAATCAA+AGG | + | chr6_2:43512113-43512132 | Msa0917880:CDS | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | + | chr6_2:43512153-43512172 | Msa0917880:CDS | 35.0% | |
| TACTAAGAGAACAATTGGCA+TGG | + | chr6_2:43512180-43512199 | Msa0917880:CDS | 35.0% | |
| CAATTGGCATGGAGAAAAAA+TGG | + | chr6_2:43512191-43512210 | Msa0917880:CDS | 35.0% | |
| ATTGGAATGTTACGATAAGC+AGG | - | chr6_2:43512283-43512302 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | - | chr6_2:43512301-43512320 | None:intergenic | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | + | chr6_2:43512498-43512517 | Msa0917880:CDS | 35.0% | |
| !! | AGTTTCCTAGCTTTTGTGAA+AGG | + | chr6_2:43512862-43512881 | Msa0917880:CDS | 35.0% |
| GCAATGGCTTCTTTAATTGA+AGG | - | chr6_2:43512922-43512941 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTTTCTTTTCCACT+AGG | + | chr6_2:43513003-43513022 | Msa0917880:CDS | 35.0% |
| ! | CAGATGATTTTGAACGAGAA+TGG | + | chr6_2:43513082-43513101 | Msa0917880:CDS | 35.0% |
| TGAACGAGAATGGAAAGTAA+TGG | + | chr6_2:43513092-43513111 | Msa0917880:CDS | 35.0% | |
| AAAGTAATGGTCTCACAGTT+TGG | + | chr6_2:43513105-43513124 | Msa0917880:CDS | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | - | chr6_2:43513166-43513185 | None:intergenic | 35.0% | |
| GGAAAATGTGTTGTAATCTG+AGG | - | chr6_2:43513453-43513472 | None:intergenic | 35.0% | |
| ! | TGAAGCAACTTAAAGGCATA+AGG | - | chr6_2:43513507-43513526 | None:intergenic | 35.0% |
| CTCATGTTGAAGCAACTTAA+AGG | - | chr6_2:43513514-43513533 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | + | chr6_2:43513591-43513610 | Msa0917880:CDS | 35.0% | |
| CTTTCTCGTCTAAATCGAAA+AGG | - | chr6_2:43513759-43513778 | None:intergenic | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | + | chr6_2:43513839-43513858 | Msa0917880:CDS | 35.0% | |
| ATCACATGTTCTTGAGTTTC+AGG | - | chr6_2:43513948-43513967 | None:intergenic | 35.0% | |
| !! | ACATGTGATTGATTTGGAAG+CGG | + | chr6_2:43513959-43513978 | Msa0917880:CDS | 35.0% |
| TGCTTTGATAGGATCATGAA+GGG | + | chr6_2:43514271-43514290 | Msa0917880:intron | 35.0% | |
| !! | CATTTTGATCAAAGCAGCTT+CGG | - | chr6_2:43514420-43514439 | None:intergenic | 35.0% |
| ! | GCAGTCTTGATTCTTTTGGT+TGG | - | chr6_2:43511370-43511389 | None:intergenic | 40.0% |
| TCCATTGATCCATCTTGCTT+CGG | + | chr6_2:43511445-43511464 | Msa0917880:five_prime_UTR | 40.0% | |
| TCGGTCAAAAAGCTAATTCC+AGG | + | chr6_2:43511464-43511483 | Msa0917880:five_prime_UTR | 40.0% | |
| ATGTTAGTGACTTGAGGCAA+GGG | - | chr6_2:43511776-43511795 | None:intergenic | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | - | chr6_2:43511777-43511796 | None:intergenic | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | - | chr6_2:43511782-43511801 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | + | chr6_2:43511779-43511798 | Msa0917880:CDS | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | + | chr6_2:43511783-43511802 | Msa0917880:CDS | 40.0% | |
| ! | AGTCACTAACATTGATGGGT+GGG | + | chr6_2:43511784-43511803 | Msa0917880:CDS | 40.0% |
| !! | ATGTTATTGACTCGAGGCAA+GGG | - | chr6_2:43511884-43511903 | None:intergenic | 40.0% |
| !! | AATGTTATTGACTCGAGGCA+AGG | - | chr6_2:43511885-43511904 | None:intergenic | 40.0% |
| TGTGTCTGAAGAGAATCCAT+CGG | + | chr6_2:43512033-43512052 | Msa0917880:CDS | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | + | chr6_2:43512047-43512066 | Msa0917880:CDS | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | + | chr6_2:43512048-43512067 | Msa0917880:CDS | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | + | chr6_2:43512067-43512086 | Msa0917880:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | + | chr6_2:43512070-43512089 | Msa0917880:CDS | 40.0% |
| TTCTCACAACCACGAGTTAT+TGG | + | chr6_2:43512234-43512253 | Msa0917880:CDS | 40.0% | |
| CTTTGTCATCCAATAACTCG+TGG | - | chr6_2:43512246-43512265 | None:intergenic | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | + | chr6_2:43512246-43512265 | Msa0917880:CDS | 40.0% | |
| TATAAGACTTACAGGGCAAC+CGG | - | chr6_2:43512341-43512360 | None:intergenic | 40.0% | |
| CTCTCGCTATAAGACTTACA+GGG | - | chr6_2:43512348-43512367 | None:intergenic | 40.0% | |
| ACTCTCGCTATAAGACTTAC+AGG | - | chr6_2:43512349-43512368 | None:intergenic | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | + | chr6_2:43512562-43512581 | Msa0917880:CDS | 40.0% | |
| ! | ATTCGCGCATATGAAGCTTT+TGG | + | chr6_2:43512592-43512611 | Msa0917880:CDS | 40.0% |
| !! | TTCCAAGAGGCATCTCATAA+CGG | - | chr6_2:43512654-43512673 | None:intergenic | 40.0% |
| ATGAGATGCCTCTTGGAATA+TGG | + | chr6_2:43512656-43512675 | Msa0917880:CDS | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | + | chr6_2:43512657-43512676 | Msa0917880:CDS | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+TGG | + | chr6_2:43512676-43512695 | Msa0917880:CDS | 40.0% |
| AGAAGATTTCTTCCTTCGCA+TGG | + | chr6_2:43512737-43512756 | Msa0917880:CDS | 40.0% | |
| GAAGATTTCTTCCTTCGCAT+GGG | + | chr6_2:43512738-43512757 | Msa0917880:CDS | 40.0% | |
| GTTTGGCAATTCCATTGCAA+TGG | - | chr6_2:43512938-43512957 | None:intergenic | 40.0% | |
| TCATCATATCTCGAACCTAG+TGG | - | chr6_2:43513021-43513040 | None:intergenic | 40.0% | |
| AATGGTCTCACAGTTTGGTT+TGG | + | chr6_2:43513110-43513129 | Msa0917880:CDS | 40.0% | |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | + | chr6_2:43513111-43513130 | Msa0917880:CDS | 40.0% |
| CTAAGGCCCAAAATTTACGA+TGG | - | chr6_2:43513167-43513186 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | + | chr6_2:43513176-43513195 | Msa0917880:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | + | chr6_2:43513207-43513226 | Msa0917880:CDS | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | + | chr6_2:43513401-43513420 | Msa0917880:CDS | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | - | chr6_2:43513490-43513509 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | + | chr6_2:43513594-43513613 | Msa0917880:CDS | 40.0% |
| TATACGACCACCATCAACTT+TGG | - | chr6_2:43513604-43513623 | None:intergenic | 40.0% | |
| TAGAGACTGAAATTTGGGAG+AGG | - | chr6_2:43513829-43513848 | None:intergenic | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | + | chr6_2:43513875-43513894 | Msa0917880:CDS | 40.0% | |
| AAAACAAAAGGTCGGCCAAA+AGG | + | chr6_2:43514029-43514048 | Msa0917880:CDS | 40.0% | |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | - | chr6_2:43514047-43514066 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGACCAAA+AGG | + | chr6_2:43514044-43514063 | Msa0917880:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | + | chr6_2:43514047-43514066 | Msa0917880:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | + | chr6_2:43514048-43514067 | Msa0917880:CDS | 40.0% | |
| ! | TGATTAGTTCCACCACAATC+TGG | - | chr6_2:43514110-43514129 | None:intergenic | 40.0% |
| GTGCTTTGATAGGATCATGA+AGG | + | chr6_2:43514270-43514289 | Msa0917880:intron | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | + | chr6_2:43514275-43514294 | Msa0917880:intron | 40.0% | |
| AGTGAATTGGACAGATGAAG+CGG | + | chr6_2:43514316-43514335 | Msa0917880:three_prime_UTR | 40.0% | |
| !! | AGATAGCGGGAAAGGGTAAA+GGG | - | chr6_2:43511338-43511357 | None:intergenic | 45.0% |
| ACCGAAGCAAGATGGATCAA+TGG | - | chr6_2:43511449-43511468 | None:intergenic | 45.0% | |
| ! | GCTTTTTGACCGAAGCAAGA+TGG | - | chr6_2:43511457-43511476 | None:intergenic | 45.0% |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | + | chr6_2:43511798-43511817 | Msa0917880:CDS | 45.0% |
| ! | ATGAGGGGGTTCCTTTTGAA+GGG | + | chr6_2:43511906-43511925 | Msa0917880:CDS | 45.0% |
| GTGTCTGAAGAGAATCCATC+GGG | + | chr6_2:43512034-43512053 | Msa0917880:CDS | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | - | chr6_2:43512052-43512071 | None:intergenic | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | + | chr6_2:43512076-43512095 | Msa0917880:CDS | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | + | chr6_2:43512102-43512121 | Msa0917880:CDS | 45.0% | |
| ! | TCCACTTCAACAGTTTTGCG+TGG | - | chr6_2:43512106-43512125 | None:intergenic | 45.0% |
| TGGCATGGAGAAAAAATGGG+TGG | + | chr6_2:43512195-43512214 | Msa0917880:CDS | 45.0% | |
| AACCGTTATGAGATGCCTCT+TGG | + | chr6_2:43512649-43512668 | Msa0917880:CDS | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | + | chr6_2:43512661-43512680 | Msa0917880:CDS | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | - | chr6_2:43512667-43512686 | None:intergenic | 45.0% | |
| ! | TTCCTTCGCATGGGCTATAA+AGG | + | chr6_2:43512747-43512766 | Msa0917880:CDS | 45.0% |
| TACCTTTATAGCCCATGCGA+AGG | - | chr6_2:43512752-43512771 | None:intergenic | 45.0% | |
| TTGTCGCAAAGCTGTCAAGT+TGG | + | chr6_2:43512986-43513005 | Msa0917880:CDS | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | - | chr6_2:43513474-43513493 | None:intergenic | 45.0% | |
| GCAGCAATTGAAGCTGACAA+TGG | + | chr6_2:43513555-43513574 | Msa0917880:CDS | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | + | chr6_2:43514049-43514068 | Msa0917880:CDS | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | + | chr6_2:43514095-43514114 | Msa0917880:CDS | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | + | chr6_2:43514098-43514117 | Msa0917880:CDS | 45.0% | |
| !!! | ATTTTTATTTTTAAGAAAAT+AGG | + | chr6_2:43511686-43511705 | Msa0917880:intron | 5.0% |
| !! | CAGATAGCGGGAAAGGGTAA+AGG | - | chr6_2:43511339-43511358 | None:intergenic | 50.0% |
| TTGGAAACTGGGCAGATAGC+GGG | - | chr6_2:43511351-43511370 | None:intergenic | 50.0% | |
| GTTGGAAACTGGGCAGATAG+CGG | - | chr6_2:43511352-43511371 | None:intergenic | 50.0% | |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | + | chr6_2:43511797-43511816 | Msa0917880:CDS | 50.0% |
| ! | GATGAGGGGGTTCCTTTTGA+AGG | + | chr6_2:43511905-43511924 | Msa0917880:CDS | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | + | chr6_2:43513116-43513135 | Msa0917880:CDS | 50.0% |
| ATGACAACGACGAGGCTTCT+TGG | - | chr6_2:43514084-43514103 | None:intergenic | 50.0% | |
| ! | TCTGGAACATGACAACGACG+AGG | - | chr6_2:43514092-43514111 | None:intergenic | 50.0% |
| !! | ACTGGGCAGATAGCGGGAAA+GGG | - | chr6_2:43511345-43511364 | None:intergenic | 55.0% |
| !! | AACTGGGCAGATAGCGGGAA+AGG | - | chr6_2:43511346-43511365 | None:intergenic | 55.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | - | chr6_2:43514062-43514081 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 43511324 | 43514585 | 43511324 | ID=Msa0917880;Name=Msa0917880 |
| chr6_2 | mRNA | 43511324 | 43514585 | 43511324 | ID=Msa0917880-mRNA-1;Parent=Msa0917880;Name=Msa0917880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=123|1|1|1|0.6|0.5|6|282|770 |
| chr6_2 | exon | 43511324 | 43511351 | 43511324 | ID=Msa0917880-mRNA-1:exon:6941;Parent=Msa0917880-mRNA-1 |
| chr6_2 | exon | 43511420 | 43511485 | 43511420 | ID=Msa0917880-mRNA-1:exon:6942;Parent=Msa0917880-mRNA-1 |
| chr6_2 | exon | 43511708 | 43512768 | 43511708 | ID=Msa0917880-mRNA-1:exon:6943;Parent=Msa0917880-mRNA-1 |
| chr6_2 | exon | 43512862 | 43513305 | 43512862 | ID=Msa0917880-mRNA-1:exon:6944;Parent=Msa0917880-mRNA-1 |
| chr6_2 | exon | 43513381 | 43514195 | 43513381 | ID=Msa0917880-mRNA-1:exon:6945;Parent=Msa0917880-mRNA-1 |
| chr6_2 | exon | 43514282 | 43514585 | 43514282 | ID=Msa0917880-mRNA-1:exon:6946;Parent=Msa0917880-mRNA-1 |
| chr6_2 | five_prime_UTR | 43511324 | 43511351 | 43511324 | ID=Msa0917880-mRNA-1:five_prime_utr;Parent=Msa0917880-mRNA-1 |
| chr6_2 | five_prime_UTR | 43511420 | 43511485 | 43511420 | ID=Msa0917880-mRNA-1:five_prime_utr;Parent=Msa0917880-mRNA-1 |
| chr6_2 | five_prime_UTR | 43511708 | 43511736 | 43511708 | ID=Msa0917880-mRNA-1:five_prime_utr;Parent=Msa0917880-mRNA-1 |
| chr6_2 | CDS | 43511737 | 43512768 | 43511737 | ID=Msa0917880-mRNA-1:cds;Parent=Msa0917880-mRNA-1 |
| chr6_2 | CDS | 43512862 | 43513305 | 43512862 | ID=Msa0917880-mRNA-1:cds;Parent=Msa0917880-mRNA-1 |
| chr6_2 | CDS | 43513381 | 43514195 | 43513381 | ID=Msa0917880-mRNA-1:cds;Parent=Msa0917880-mRNA-1 |
| chr6_2 | CDS | 43514282 | 43514303 | 43514282 | ID=Msa0917880-mRNA-1:cds;Parent=Msa0917880-mRNA-1 |
| chr6_2 | three_prime_UTR | 43514304 | 43514585 | 43514304 | ID=Msa0917880-mRNA-1:three_prime_utr;Parent=Msa0917880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
