AlfalfaGEDB | Msa0954020

M. sativa cultivar zhongmu-4 / Msa0954020

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954020	sp\|Q9SY66\|FRS11_ARATH	46.584	644	333	5	46	685	43	679	0.0	615

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954020	A0A396JX52	95.497	755	26	3	1	752	1	750	0.0	1489

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TFs/TRs:

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Gene ID	Type	Classification
Msa0954020	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0056530	Msa0954020	0.801112	1.049827e-48	-8.615850e-47
Msa0142220	Msa0954020	0.832286	1.030670e-55	-8.615850e-47
Msa0165190	Msa0954020	0.806275	8.903421e-50	-8.615850e-47
Msa0192970	Msa0954020	0.810317	1.224206e-50	-8.615850e-47
Msa0231000	Msa0954020	0.822603	2.168958e-53	-8.615850e-47
Msa0267000	Msa0954020	0.804815	1.802045e-49	-8.615850e-47
Msa0267010	Msa0954020	0.810406	1.171215e-50	-8.615850e-47
Msa0270520	Msa0954020	0.828718	7.692006e-55	-8.615850e-47
Msa0306460	Msa0954020	0.807905	4.022689e-50	-8.615850e-47
Msa0360510	Msa0954020	0.810793	9.658791e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954020	MtrunA17_Chr1g0198761	95.497	755	26	3	1	752	1	750	0.0	1489
Msa0954020	MtrunA17_Chr5g0431001	75.862	464	112	0	10	473	20	483	0.0	741
Msa0954020	MtrunA17_Chr2g0276841	47.344	640	324	6	50	685	69	699	0.0	627
Msa0954020	MtrunA17_Chr2g0294841	43.239	710	371	8	50	735	44	745	0.0	597
Msa0954020	MtrunA17_Chr2g0290391	47.096	637	304	7	47	667	47	666	0.0	575
Msa0954020	MtrunA17_Chr1g0202341	29.580	666	434	15	16	668	20	663	7.94e-87	288
Msa0954020	MtrunA17_Chr5g0448761	30.782	601	383	12	40	623	52	636	9.11e-83	280
Msa0954020	MtrunA17_Chr2g0329031	28.201	578	377	12	43	611	8	556	3.27e-74	255
Msa0954020	MtrunA17_Chr2g0296781	29.662	681	416	19	57	706	3	651	9.98e-72	248
Msa0954020	MtrunA17_Chr3g0080351	28.214	599	368	14	51	625	76	636	4.96e-71	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954020	AT1G10240.2	46.584	644	333	5	46	685	43	679	0.0	615
Msa0954020	AT1G10240.1	46.584	644	333	5	46	685	43	679	0.0	615
Msa0954020	AT5G28530.3	43.807	662	338	7	22	668	28	670	0.0	557
Msa0954020	AT5G28530.2	43.807	662	338	7	22	668	28	670	0.0	557
Msa0954020	AT5G28530.1	43.807	662	342	7	22	668	28	674	0.0	554
Msa0954020	AT5G28530.5	39.877	652	315	9	22	668	28	607	2.07e-155	465
Msa0954020	AT5G28530.4	39.877	652	319	9	22	668	28	611	8.65e-155	464
Msa0954020	AT4G38180.1	31.271	582	376	9	48	618	70	638	1.19e-82	280
Msa0954020	AT4G15090.1	29.016	579	382	11	48	615	48	608	2.13e-77	266
Msa0954020	AT4G15090.5	29.016	579	382	11	48	615	48	608	2.13e-77	266

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Find 111 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGGTCGACCAAA+AGG	0.507451	6_3:-52947576	Msa0954020:CDS
AAACGGAAGTCGTCAAGATG+TGG	0.638263	6_3:-52949471	Msa0954020:CDS
AAAGCGGCCTCCGTCACTTT+TGG	0.333584	6_3:+52947998	None:intergenic
AAAGGATCAAGGCTAAAAGG+AGG	0.688106	6_3:-52947558	Msa0954020:CDS
AACAGAATCATCAATGTGAT+TGG	0.434495	6_3:+52949713	None:intergenic
AAGGTCGACCAAAAGGATCA+AGG	0.568587	6_3:-52947569	Msa0954020:CDS
AAGTCGTCAAGATGTGGTTG+TGG	0.648789	6_3:-52949465	Msa0954020:CDS
AAGTGGAAGGTAAAAGGAAA+CGG	0.542859	6_3:-52949488	Msa0954020:CDS
AATCATCTTCACATTCTAAA+TGG	0.310029	6_3:+52948549	None:intergenic
AATCGACGAAAATAACAAAT+TGG	0.284735	6_3:-52949067	Msa0954020:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGAATCATCAATGTGAT+TGG	+	chr6_3:52947558-52947577	None:intergenic	30.0%
TGTTTGTTTGCTCGAAAAAA+TGG	-	chr6_3:52947629-52947648	Msa0954020:CDS	30.0%
ATAATGAAGTGGAAGGTAAA+AGG	-	chr6_3:52947774-52947793	Msa0954020:CDS	30.0%
ATTCAATCTCAAAGTGGTAT+TGG	-	chr6_3:52948097-52948116	Msa0954020:CDS	30.0%
ACAAATTGGAGCACATTATT+TGG	-	chr6_3:52948215-52948234	Msa0954020:CDS	30.0%
CAAATTGGAGCACATTATTT+GGG	-	chr6_3:52948216-52948235	Msa0954020:CDS	30.0%
GTAACGATTTATTCGATAAG+TGG	+	chr6_3:52948299-52948318	None:intergenic	30.0%
TAGAACACAACCAAAGAAAA+TGG	+	chr6_3:52948368-52948387	None:intergenic	30.0%
TGATCTGTAAGAATTGTTTG+TGG	+	chr6_3:52948546-52948565	None:intergenic	30.0%
AATGAAAGAAGCTATTGCAA+TGG	-	chr6_3:52948575-52948594	Msa0954020:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	52947428	52949862	52947428	ID=Msa0954020;Name=Msa0954020
chr6_3	mRNA	52947428	52949862	52947428	ID=Msa0954020-mRNA-1;Parent=Msa0954020;Name=Msa0954020-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|752
chr6_3	exon	52948861	52949862	52948861	ID=Msa0954020-mRNA-1:exon:11129;Parent=Msa0954020-mRNA-1
chr6_3	exon	52948334	52948777	52948334	ID=Msa0954020-mRNA-1:exon:11128;Parent=Msa0954020-mRNA-1
chr6_3	exon	52947428	52948240	52947428	ID=Msa0954020-mRNA-1:exon:11127;Parent=Msa0954020-mRNA-1
chr6_3	CDS	52948861	52949862	52948861	ID=Msa0954020-mRNA-1:cds;Parent=Msa0954020-mRNA-1
chr6_3	CDS	52948334	52948777	52948334	ID=Msa0954020-mRNA-1:cds;Parent=Msa0954020-mRNA-1
chr6_3	CDS	52947428	52948240	52947428	ID=Msa0954020-mRNA-1:cds;Parent=Msa0954020-mRNA-1

Gene Sequence

>Msa0954020

ATGTCCATTGAGGGAAGAAATGAGTGGGTTGATGAGCTTCTTAGAGATAACAATTTAGTATATGAAGATGATGAGGCCATTGATTCTCTGACCTTTCAAGAGCCGCAACATGGACCTTTGCCTCAAGCCAATCACATTGATGATTCTGTTCCTTATGAAGGAAAGGTATTTAACAGTGATGATGAGGCTTACAACTTTTACTGTTTGTTTGCTCGAAAAAATGGTTTTTCAATTAGACGTCATCATGTTTACAAATCTATTAAGAATCAGTCGGAAGATAATCCATTAGGTGTTTATAAAAGAGAGTTTGTTTGTCATCGTGCTGGTACTATTAGCGTAGACAAAGATAATGAAGTGGAAGGTAAAAGGAAACGGAAGTCGTCAAGATGTGGTTGTGGTGCTAAATTGTTGGTGAATATAGCAACAATTAACTCTGAGAAAAAGTGGGTGGTGAAATATTTTAATAATAATCATAACCATGAGTTATTAGATGATAAAGAGGTTAAATTTCTTCCTGCTTATCGAAGTATTCCAGCTATTGATCAAGATCGTATTCTTTTGTTGTCAAAAGCTGGTTGTTCTGTTAGTTTGATAATTAGAGTGCTTGAGTTAGAGAAAAACGTAGATGCAGGAAATCTTCCATTTTTGGATAAAGACATTAGAAATTTCATTCAATCTCAAAGTGGTATTGGTAAAGAATTTGATGCTTCAAACGTTCTCAAATTATGTAAAAGTCTTAAAGATGCAGATAATGCATTTGAGTATGAATTTTCAATCGACGAAAATAACAAATTGGAGCACATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCCTTCGGAGATGTGATTGTTTTTGATACCACTTATCGAATAAATCGTTACGACATGCCGCTTGGTATTTTGGTTGGGGTCGATAATCATGGCAATTCCATTTTCTTTGGTTGTGTTCTATTGCAAAATGAGAAGATTCCTTCCTTTACATGGGCTATAAAGACTTTTCTTAGTTTTGTCAAAGGAAAATATCCACAAACAATTCTTACAGATCAAGATCTTGCAATGAAAGAAGCTATTGCAATGGAATTGCCAAACACAAAGCATGCATTTTGCATATGGCATATCCTGGCAAAGTTACCAACTTGGTTTTCTCTTCCATTAGGGTCGAGATACGATGATTTTAAAGATGAGTTTTATCGATTATACCATTTAGAATGTGAAGATGATTTTGAGAGGGAATGGAAATTGATGGTTGAACAGTTTTGTCTTAGCAAGGATAACCATATTTACTTGCTCTATTCGCTTCGTCAATTTTGGGCCCTAGCTTATTTGAAGGACTTCTTTTTTGCTGGAATGACTACAACTGGACGTTCAGAATCTATAAATTCATATATAAAAAGATTCCTGGGAGCCAATACAAGTCTGACTGATTTCATAAATCAAGTTGGGGTTGCTGTTAACATTAGAAATCAAGCTGGAGAAGAAGCAAGAATGCGCCAAAAGTACCACAATCCTCGTATTAGAACATGTTTTCCTATTGAGGAACATGCCGCATCTATTCTTACACCTTATGCCTTTAAGTTGATTCAACATGAGATTGAGTTGTCTACAAAATATGCAGCAACTGAAACTAATAATAGTGTATTCATTGTGCGACATCATACCAAAAGTGACGGAGGCCGCTTTGTAAGTTGGATACAAGAAAATGAATCAATCCATTGTTCTTGCAAGGAATTTGAATTTTCTGGGATATTATGTAGACATGCTTTTCGGGTGCTTGTGATGAAAAATTATTTTACCCTCCCTTCCAAGTATCTTCCTCTTCGTTGGAGACAAGAAAGTTCATTGATTCCAAAATCTAGTCACATGATTAACAACAATGGTGGCTCCCTTGTTAAGTTTAGGTCCTTAGTTCAATGTCTAGAAATTGAATCCTTGAAGACAAAAGAACGAGAACAAGCTGCAACTAGAGAGTTAGAGAAAGCCATTCAAGTGATTAAAGCCATGCCTCAAGAAAAGTTGGTGGGTGTTGATTCTACGGTTCCAGATAATGATGAGTTGAATGTTGAAAATCCTTTACCTTCAAAAACAAAAGGTCGACCAAAAGGATCAAGGCTAAAAGGAGGAGTTGAAATTGCAAAGAAGCCTCGTCATTGTCATGTTCCAAATTGCGGTGGAACTGATCATGACTCGAGGAATTGTCCAAATAAAAAGAAAAATATTGAAGCATTACCTTCTCAATCTCCTAATAAGTAA

Protein sequence

>Msa0954020

MSIEGRNEWVDELLRDNNLVYEDDEAIDSLTFQEPQHGPLPQANHIDDSVPYEGKVFNSDDEAYNFYCLFARKNGFSIRRHHVYKSIKNQSEDNPLGVYKREFVCHRAGTISVDKDNEVEGKRKRKSSRCGCGAKLLVNIATINSEKKWVVKYFNNNHNHELLDDKEVKFLPAYRSIPAIDQDRILLLSKAGCSVSLIIRVLELEKNVDAGNLPFLDKDIRNFIQSQSGIGKEFDASNVLKLCKSLKDADNAFEYEFSIDENNKLEHIIWAFGDSIRAYEAFGDVIVFDTTYRINRYDMPLGILVGVDNHGNSIFFGCVLLQNEKIPSFTWAIKTFLSFVKGKYPQTILTDQDLAMKEAIAMELPNTKHAFCIWHILAKLPTWFSLPLGSRYDDFKDEFYRLYHLECEDDFEREWKLMVEQFCLSKDNHIYLLYSLRQFWALAYLKDFFFAGMTTTGRSESINSYIKRFLGANTSLTDFINQVGVAVNIRNQAGEEARMRQKYHNPRIRTCFPIEEHAASILTPYAFKLIQHEIELSTKYAATETNNSVFIVRHHTKSDGGRFVSWIQENESIHCSCKEFEFSGILCRHAFRVLVMKNYFTLPSKYLPLRWRQESSLIPKSSHMINNNGGSLVKFRSLVQCLEIESLKTKEREQAATRELEKAIQVIKAMPQEKLVGVDSTVPDNDELNVENPLPSKTKGRPKGSRLKGGVEIAKKPRHCHVPNCGGTDHDSRNCPNKKKNIEALPSQSPNK*