Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954020 | sp|Q9SY66|FRS11_ARATH | 46.584 | 644 | 333 | 5 | 46 | 685 | 43 | 679 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954020 | A0A396JX52 | 95.497 | 755 | 26 | 3 | 1 | 752 | 1 | 750 | 0.0 | 1489 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0954020 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056530 | Msa0954020 | 0.801112 | 1.049827e-48 | -8.615850e-47 |
| Msa0726140 | Msa0954020 | 0.812211 | 4.751610e-51 | -8.615850e-47 |
| Msa0743810 | Msa0954020 | 0.806575 | 7.695778e-50 | -8.615850e-47 |
| Msa0787600 | Msa0954020 | 0.802055 | 6.725933e-49 | -8.615850e-47 |
| Msa0811080 | Msa0954020 | 0.804809 | 1.807260e-49 | -8.615850e-47 |
| Msa0833290 | Msa0954020 | 0.802888 | 4.530206e-49 | -8.615850e-47 |
| Msa0142220 | Msa0954020 | 0.832286 | 1.030670e-55 | -8.615850e-47 |
| Msa0165190 | Msa0954020 | 0.806275 | 8.903421e-50 | -8.615850e-47 |
| Msa0192970 | Msa0954020 | 0.810317 | 1.224206e-50 | -8.615850e-47 |
| Msa0231000 | Msa0954020 | 0.822603 | 2.168958e-53 | -8.615850e-47 |
| Msa0384800 | Msa0954020 | 0.813616 | 2.338712e-51 | -8.615850e-47 |
| Msa0436780 | Msa0954020 | 0.827297 | 1.690787e-54 | -8.615850e-47 |
| Msa0436800 | Msa0954020 | 0.808233 | 3.424327e-50 | -8.615850e-47 |
| Msa0452900 | Msa0954020 | 0.801691 | 7.989968e-49 | -8.615850e-47 |
| Msa0453120 | Msa0954020 | 0.834985 | 2.183658e-56 | -8.615850e-47 |
| Msa0267000 | Msa0954020 | 0.804815 | 1.802045e-49 | -8.615850e-47 |
| Msa0267010 | Msa0954020 | 0.810406 | 1.171215e-50 | -8.615850e-47 |
| Msa0270520 | Msa0954020 | 0.828718 | 7.692006e-55 | -8.615850e-47 |
| Msa0306460 | Msa0954020 | 0.807905 | 4.022689e-50 | -8.615850e-47 |
| Msa0360510 | Msa0954020 | 0.810793 | 9.658791e-51 | -8.615850e-47 |
| Msa0506270 | Msa0954020 | 0.824806 | 6.611319e-54 | -8.615850e-47 |
| Msa0846350 | Msa0954020 | 0.805753 | 1.146328e-49 | -8.615850e-47 |
| Msa0885280 | Msa0954020 | 0.812310 | 4.520366e-51 | -8.615850e-47 |
| Msa0954020 | Msa0981370 | 0.805472 | 1.313154e-49 | -8.615850e-47 |
| Msa0954020 | Msa0989060 | 0.821818 | 3.297715e-53 | -8.615850e-47 |
| Msa0954020 | Msa1023010 | 0.897842 | 9.500080e-77 | -8.615850e-47 |
| Msa0954020 | Msa1025360 | 0.803979 | 2.692089e-49 | -8.615850e-47 |
| Msa0954020 | Msa1025370 | 0.803057 | 4.181164e-49 | -8.615850e-47 |
| Msa0954020 | Msa1044830 | 0.804068 | 2.579759e-49 | -8.615850e-47 |
| Msa0954020 | Msa1044840 | 0.805268 | 1.449202e-49 | -8.615850e-47 |
| Msa0954020 | Msa1099970 | 0.913841 | 3.852080e-84 | -8.615850e-47 |
| Msa0954020 | Msa1121200 | 0.820916 | 5.325796e-53 | -8.615850e-47 |
| Msa0954020 | Msa1160670 | 0.820047 | 8.431649e-53 | -8.615850e-47 |
| Msa0954020 | Msa1187950 | 0.815720 | 7.998818e-52 | -8.615850e-47 |
| Msa0954020 | Msa1270230 | 0.807532 | 4.828502e-50 | -8.615850e-47 |
| Msa0954020 | Msa1283330 | 0.814157 | 1.777592e-51 | -8.615850e-47 |
| Msa0954020 | Msa1285930 | 0.811856 | 5.677745e-51 | -8.615850e-47 |
| Msa0954020 | Msa1287800 | 0.801159 | 1.026992e-48 | -8.615850e-47 |
| Msa0954020 | Msa1287810 | 0.803970 | 2.702821e-49 | -8.615850e-47 |
| Msa0954020 | Msa1404000 | 0.803627 | 3.184923e-49 | -8.615850e-47 |
| Msa0954020 | Msa1433120 | 0.801186 | 1.013905e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954020 | MtrunA17_Chr1g0198761 | 95.497 | 755 | 26 | 3 | 1 | 752 | 1 | 750 | 0.0 | 1489 |
| Msa0954020 | MtrunA17_Chr5g0431001 | 75.862 | 464 | 112 | 0 | 10 | 473 | 20 | 483 | 0.0 | 741 |
| Msa0954020 | MtrunA17_Chr2g0276841 | 47.344 | 640 | 324 | 6 | 50 | 685 | 69 | 699 | 0.0 | 627 |
| Msa0954020 | MtrunA17_Chr2g0294841 | 43.239 | 710 | 371 | 8 | 50 | 735 | 44 | 745 | 0.0 | 597 |
| Msa0954020 | MtrunA17_Chr2g0290391 | 47.096 | 637 | 304 | 7 | 47 | 667 | 47 | 666 | 0.0 | 575 |
| Msa0954020 | MtrunA17_Chr1g0202341 | 29.580 | 666 | 434 | 15 | 16 | 668 | 20 | 663 | 7.94e-87 | 288 |
| Msa0954020 | MtrunA17_Chr5g0448761 | 30.782 | 601 | 383 | 12 | 40 | 623 | 52 | 636 | 9.11e-83 | 280 |
| Msa0954020 | MtrunA17_Chr2g0329031 | 28.201 | 578 | 377 | 12 | 43 | 611 | 8 | 556 | 3.27e-74 | 255 |
| Msa0954020 | MtrunA17_Chr2g0296781 | 29.662 | 681 | 416 | 19 | 57 | 706 | 3 | 651 | 9.98e-72 | 248 |
| Msa0954020 | MtrunA17_Chr3g0080351 | 28.214 | 599 | 368 | 14 | 51 | 625 | 76 | 636 | 4.96e-71 | 248 |
| Msa0954020 | MtrunA17_Chr8g0363841 | 27.844 | 668 | 433 | 18 | 52 | 687 | 18 | 668 | 6.25e-71 | 245 |
| Msa0954020 | MtrunA17_Chr5g0441581 | 29.688 | 576 | 365 | 15 | 51 | 613 | 32 | 580 | 6.36e-71 | 245 |
| Msa0954020 | MtrunA17_Chr3g0082121 | 28.882 | 644 | 426 | 15 | 48 | 680 | 40 | 662 | 1.49e-70 | 244 |
| Msa0954020 | MtrunA17_Chr1g0203051 | 27.703 | 592 | 396 | 12 | 21 | 604 | 55 | 622 | 1.59e-69 | 240 |
| Msa0954020 | MtrunA17_Chr6g0458391 | 28.425 | 584 | 365 | 8 | 48 | 617 | 222 | 766 | 3.00e-67 | 236 |
| Msa0954020 | MtrunA17_Chr6g0477261 | 31.646 | 553 | 332 | 15 | 184 | 706 | 4 | 540 | 2.45e-66 | 232 |
| Msa0954020 | MtrunA17_Chr2g0287651 | 28.716 | 592 | 391 | 12 | 57 | 635 | 81 | 654 | 3.89e-66 | 235 |
| Msa0954020 | MtrunA17_Chr5g0440451 | 26.324 | 680 | 424 | 17 | 49 | 684 | 41 | 687 | 1.72e-65 | 234 |
| Msa0954020 | MtrunA17_Chr1g0207551 | 28.276 | 580 | 386 | 13 | 48 | 617 | 31 | 590 | 1.74e-65 | 233 |
| Msa0954020 | MtrunA17_Chr2g0324011 | 27.826 | 575 | 394 | 9 | 48 | 615 | 7 | 567 | 5.79e-63 | 221 |
| Msa0954020 | MtrunA17_Chr1g0196541 | 27.099 | 679 | 454 | 18 | 56 | 716 | 2 | 657 | 3.75e-62 | 222 |
| Msa0954020 | MtrunA17_Chr5g0448511 | 32.275 | 378 | 250 | 3 | 239 | 611 | 16 | 392 | 1.74e-59 | 210 |
| Msa0954020 | MtrunA17_Chr2g0287061 | 29.525 | 569 | 338 | 16 | 51 | 611 | 183 | 696 | 1.27e-58 | 213 |
| Msa0954020 | MtrunA17_Chr1g0203721 | 26.316 | 589 | 379 | 15 | 54 | 617 | 66 | 624 | 6.46e-58 | 212 |
| Msa0954020 | MtrunA17_Chr3g0118611 | 30.660 | 424 | 283 | 6 | 193 | 611 | 79 | 496 | 2.16e-56 | 206 |
| Msa0954020 | MtrunA17_Chr2g0291581 | 25.740 | 676 | 441 | 19 | 28 | 674 | 43 | 686 | 6.85e-54 | 197 |
| Msa0954020 | MtrunA17_Chr3g0081281 | 80.645 | 93 | 18 | 0 | 199 | 291 | 1 | 93 | 7.48e-46 | 158 |
| Msa0954020 | MtrunA17_Chr2g0291591 | 24.528 | 530 | 347 | 15 | 47 | 555 | 60 | 557 | 8.07e-40 | 155 |
| Msa0954020 | MtrunA17_Chr1g0164591 | 36.275 | 204 | 128 | 2 | 252 | 454 | 106 | 308 | 8.82e-39 | 146 |
| Msa0954020 | MtrunA17_Chr5g0430921 | 69.412 | 85 | 24 | 1 | 670 | 752 | 1 | 85 | 1.62e-35 | 129 |
| Msa0954020 | MtrunA17_Chr7g0258861 | 26.621 | 293 | 201 | 6 | 48 | 337 | 7 | 288 | 3.01e-24 | 103 |
| Msa0954020 | MtrunA17_Chr2g0308841 | 26.923 | 208 | 147 | 2 | 409 | 611 | 15 | 222 | 2.51e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954020 | AT1G10240.2 | 46.584 | 644 | 333 | 5 | 46 | 685 | 43 | 679 | 0.0 | 615 |
| Msa0954020 | AT1G10240.1 | 46.584 | 644 | 333 | 5 | 46 | 685 | 43 | 679 | 0.0 | 615 |
| Msa0954020 | AT5G28530.3 | 43.807 | 662 | 338 | 7 | 22 | 668 | 28 | 670 | 0.0 | 557 |
| Msa0954020 | AT5G28530.2 | 43.807 | 662 | 338 | 7 | 22 | 668 | 28 | 670 | 0.0 | 557 |
| Msa0954020 | AT5G28530.1 | 43.807 | 662 | 342 | 7 | 22 | 668 | 28 | 674 | 0.0 | 554 |
| Msa0954020 | AT5G28530.5 | 39.877 | 652 | 315 | 9 | 22 | 668 | 28 | 607 | 2.07e-155 | 465 |
| Msa0954020 | AT5G28530.4 | 39.877 | 652 | 319 | 9 | 22 | 668 | 28 | 611 | 8.65e-155 | 464 |
| Msa0954020 | AT4G38180.1 | 31.271 | 582 | 376 | 9 | 48 | 618 | 70 | 638 | 1.19e-82 | 280 |
| Msa0954020 | AT4G15090.1 | 29.016 | 579 | 382 | 11 | 48 | 615 | 48 | 608 | 2.13e-77 | 266 |
| Msa0954020 | AT4G15090.5 | 29.016 | 579 | 382 | 11 | 48 | 615 | 48 | 608 | 2.13e-77 | 266 |
| Msa0954020 | AT4G15090.3 | 29.016 | 579 | 382 | 11 | 48 | 615 | 48 | 608 | 2.13e-77 | 266 |
| Msa0954020 | AT4G15090.2 | 29.016 | 579 | 382 | 11 | 48 | 615 | 48 | 608 | 2.13e-77 | 266 |
| Msa0954020 | AT4G15090.4 | 29.016 | 579 | 382 | 11 | 48 | 615 | 48 | 608 | 2.13e-77 | 266 |
| Msa0954020 | AT1G76320.3 | 27.194 | 581 | 383 | 12 | 57 | 628 | 3 | 552 | 1.07e-66 | 233 |
| Msa0954020 | AT1G76320.2 | 27.194 | 581 | 383 | 12 | 57 | 628 | 3 | 552 | 1.89e-66 | 234 |
| Msa0954020 | AT1G76320.1 | 27.194 | 581 | 383 | 12 | 57 | 628 | 3 | 552 | 1.97e-66 | 234 |
| Msa0954020 | AT1G76320.4 | 27.194 | 581 | 383 | 12 | 57 | 628 | 3 | 552 | 1.97e-66 | 234 |
| Msa0954020 | AT3G22170.2 | 26.043 | 599 | 358 | 15 | 51 | 615 | 70 | 617 | 1.45e-63 | 228 |
| Msa0954020 | AT3G22170.1 | 26.043 | 599 | 358 | 15 | 51 | 615 | 70 | 617 | 1.45e-63 | 228 |
| Msa0954020 | AT3G06250.2 | 28.471 | 569 | 340 | 14 | 51 | 611 | 190 | 699 | 7.37e-60 | 216 |
| Msa0954020 | AT3G06250.1 | 28.471 | 569 | 340 | 14 | 51 | 611 | 190 | 699 | 7.37e-60 | 216 |
| Msa0954020 | AT3G06250.3 | 28.471 | 569 | 340 | 14 | 51 | 611 | 190 | 699 | 7.37e-60 | 216 |
| Msa0954020 | AT5G18960.2 | 27.014 | 633 | 386 | 16 | 37 | 661 | 197 | 761 | 2.34e-58 | 212 |
| Msa0954020 | AT5G18960.1 | 27.014 | 633 | 386 | 16 | 37 | 661 | 197 | 761 | 2.34e-58 | 212 |
| Msa0954020 | AT2G27110.2 | 26.780 | 590 | 384 | 13 | 51 | 633 | 49 | 597 | 1.98e-57 | 211 |
| Msa0954020 | AT2G27110.1 | 26.780 | 590 | 384 | 13 | 51 | 633 | 49 | 597 | 1.98e-57 | 211 |
| Msa0954020 | AT1G52520.1 | 26.859 | 659 | 421 | 20 | 50 | 686 | 84 | 703 | 4.75e-53 | 196 |
| Msa0954020 | AT2G27110.3 | 29.157 | 415 | 281 | 7 | 226 | 633 | 44 | 452 | 1.26e-52 | 195 |
| Msa0954020 | AT4G19990.6 | 26.146 | 589 | 356 | 15 | 53 | 615 | 23 | 558 | 1.14e-50 | 190 |
| Msa0954020 | AT4G19990.2 | 26.146 | 589 | 356 | 15 | 53 | 615 | 23 | 558 | 1.14e-50 | 190 |
| Msa0954020 | AT4G19990.3 | 26.576 | 587 | 356 | 15 | 53 | 615 | 23 | 558 | 1.15e-50 | 190 |
| Msa0954020 | AT4G19990.4 | 26.576 | 587 | 356 | 15 | 53 | 615 | 23 | 558 | 1.15e-50 | 190 |
| Msa0954020 | AT4G19990.5 | 26.146 | 589 | 356 | 15 | 53 | 615 | 23 | 558 | 1.23e-50 | 189 |
| Msa0954020 | AT4G19990.7 | 26.146 | 589 | 356 | 15 | 53 | 615 | 37 | 572 | 1.45e-50 | 189 |
| Msa0954020 | AT2G32250.5 | 25.265 | 566 | 363 | 12 | 54 | 614 | 41 | 551 | 4.96e-50 | 188 |
| Msa0954020 | AT2G32250.2 | 25.265 | 566 | 363 | 12 | 54 | 614 | 41 | 551 | 5.08e-50 | 188 |
| Msa0954020 | AT2G32250.4 | 25.265 | 566 | 363 | 12 | 54 | 614 | 41 | 551 | 5.08e-50 | 188 |
| Msa0954020 | AT2G32250.6 | 25.265 | 566 | 363 | 12 | 54 | 614 | 41 | 551 | 6.34e-50 | 188 |
| Msa0954020 | AT2G32250.1 | 25.265 | 566 | 363 | 12 | 54 | 614 | 41 | 551 | 6.34e-50 | 188 |
| Msa0954020 | AT2G32250.3 | 25.265 | 566 | 363 | 12 | 54 | 614 | 41 | 551 | 6.34e-50 | 188 |
| Msa0954020 | AT2G32250.7 | 25.222 | 563 | 361 | 12 | 57 | 614 | 3 | 510 | 8.83e-50 | 187 |
| Msa0954020 | AT2G32250.8 | 25.222 | 563 | 361 | 12 | 57 | 614 | 3 | 510 | 8.83e-50 | 187 |
| Msa0954020 | AT4G19990.1 | 26.443 | 537 | 328 | 13 | 102 | 615 | 9 | 501 | 5.67e-47 | 178 |
| Msa0954020 | AT1G80010.1 | 24.671 | 608 | 371 | 18 | 51 | 614 | 95 | 659 | 6.83e-46 | 175 |
| Msa0954020 | AT4G38170.1 | 27.051 | 451 | 282 | 8 | 238 | 668 | 20 | 443 | 7.37e-45 | 169 |
Find 111 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTCGCTTCGTCAATTT+TGG | 0.087673 | 6_3:-52948460 | Msa0954020:CDS |
| ACAAATTGGAGCACATTATT+TGG | 0.097710 | 6_3:-52949053 | Msa0954020:CDS |
| CGACATGCCGCTTGGTATTT+TGG | 0.131409 | 6_3:-52948950 | Msa0954020:CDS |
| TTAATCATGTGACTAGATTT+TGG | 0.164848 | 6_3:+52947810 | None:intergenic |
| CTCATGTTGAATCAACTTAA+AGG | 0.216965 | 6_3:+52948088 | None:intergenic |
| TTCCTTTACATGGGCTATAA+AGG | 0.281917 | 6_3:-52948860 | Msa0954020:intron |
| AATCGACGAAAATAACAAAT+TGG | 0.284735 | 6_3:-52949067 | Msa0954020:CDS |
| TAGAACACAACCAAAGAAAA+TGG | 0.288289 | 6_3:+52948903 | None:intergenic |
| ACATTCAACTCATCATTATC+TGG | 0.288967 | 6_3:+52947618 | None:intergenic |
| TACGAGGATTGTGGTACTTT+TGG | 0.294933 | 6_3:+52948165 | None:intergenic |
| AATCATCTTCACATTCTAAA+TGG | 0.310029 | 6_3:+52948549 | None:intergenic |
| CCAAAAGGATCAAGGCTAAA+AGG | 0.316490 | 6_3:-52947561 | Msa0954020:CDS |
| TGATCAGTTCCACCGCAATT+TGG | 0.318106 | 6_3:+52947498 | None:intergenic |
| GCGAATAGAGCAAGTAAATA+TGG | 0.328166 | 6_3:+52948474 | None:intergenic |
| CAAATTGGAGCACATTATTT+GGG | 0.331042 | 6_3:-52949052 | Msa0954020:CDS |
| AAAGCGGCCTCCGTCACTTT+TGG | 0.333584 | 6_3:+52947998 | None:intergenic |
| ATAATGAAGTGGAAGGTAAA+AGG | 0.341694 | 6_3:-52949494 | Msa0954020:CDS |
| GAGCACATTATTTGGGCATT+TGG | 0.347058 | 6_3:-52949045 | Msa0954020:CDS |
| ATTCAATCTCAAAGTGGTAT+TGG | 0.353310 | 6_3:-52949171 | Msa0954020:CDS |
| GTGGCTCCCTTGTTAAGTTT+AGG | 0.365380 | 6_3:-52947779 | Msa0954020:CDS |
| TTAAATACCTTTCCTTCATA+AGG | 0.366785 | 6_3:+52949690 | None:intergenic |
| TCATCGTATCTCGACCCTAA+TGG | 0.373310 | 6_3:+52948599 | None:intergenic |
| GAAATCAGTCAGACTTGTAT+TGG | 0.379332 | 6_3:+52948343 | None:intergenic |
| CATGGCTTTAATCACTTGAA+TGG | 0.382567 | 6_3:+52947677 | None:intergenic |
| TTTGCTGGAATGACTACAAC+TGG | 0.388310 | 6_3:-52948410 | Msa0954020:CDS |
| CAAAATGCATGCTTTGTGTT+TGG | 0.392144 | 6_3:+52948665 | None:intergenic |
| AGAAGATTCCTTCCTTTACA+TGG | 0.405041 | 6_3:-52948870 | Msa0954020:CDS |
| GATGCGGCATGTTCCTCAAT+AGG | 0.414686 | 6_3:+52948128 | None:intergenic |
| GATGATTCTGTTCCTTATGA+AGG | 0.424416 | 6_3:-52949702 | Msa0954020:CDS |
| CCACTCATTTCTTCCCTCAA+TGG | 0.424520 | 6_3:+52949836 | None:intergenic |
| ACCAAGTTGGTAACTTTGCC+AGG | 0.432753 | 6_3:+52948630 | None:intergenic |
| AACAGAATCATCAATGTGAT+TGG | 0.434495 | 6_3:+52949713 | None:intergenic |
| TGAGAGGGAATGGAAATTGA+TGG | 0.437961 | 6_3:-52948525 | Msa0954020:CDS |
| TTGGGCCCTAGCTTATTTGA+AGG | 0.438270 | 6_3:-52948441 | Msa0954020:CDS |
| CAGTCGGAAGATAATCCATT+AGG | 0.454154 | 6_3:-52949573 | Msa0954020:CDS |
| CCAAGTATCTTCCTCTTCGT+TGG | 0.454342 | 6_3:-52947854 | Msa0954020:CDS |
| GTAACGATTTATTCGATAAG+TGG | 0.456829 | 6_3:+52948972 | None:intergenic |
| TGAATCAACTTAAAGGCATA+AGG | 0.471446 | 6_3:+52948095 | None:intergenic |
| ACGGAGGCCGCTTTGTAAGT+TGG | 0.473799 | 6_3:-52947989 | Msa0954020:CDS |
| TTGGTTGGGGTCGATAATCA+TGG | 0.477466 | 6_3:-52948931 | Msa0954020:CDS |
| GAGATAATTATGTCCATTGA+GGG | 0.480622 | 6_3:-52949849 | None:intergenic |
| TGAGTTATTAGATGATAAAG+AGG | 0.481430 | 6_3:-52949361 | Msa0954020:CDS |
| GTTGGTGGGTGTTGATTCTA+CGG | 0.481982 | 6_3:-52947643 | Msa0954020:CDS |
| AGAAGTCCTTCAAATAAGCT+AGG | 0.482445 | 6_3:+52948435 | None:intergenic |
| TGGTTGTGGTGCTAAATTGT+TGG | 0.487405 | 6_3:-52949451 | Msa0954020:CDS |
| ATTCGAGCATATGAAGCCTT+CGG | 0.487986 | 6_3:-52949015 | Msa0954020:CDS |
| CAAATTCCTTGCAAGAACAA+TGG | 0.494565 | 6_3:+52947946 | None:intergenic |
| TCCTGGCAAAGTTACCAACT+TGG | 0.495704 | 6_3:-52948631 | Msa0954020:CDS |
| ATGTGATTGGCTTGAGGCAA+AGG | 0.498857 | 6_3:+52949726 | None:intergenic |
| TGATCTGTAAGAATTGTTTG+TGG | 0.499648 | 6_3:+52948725 | None:intergenic |
| CCAACGAAGAGGAAGATACT+TGG | 0.501458 | 6_3:+52947854 | None:intergenic |
| TCAGACTTGTATTGGCTCCC+AGG | 0.503601 | 6_3:+52948351 | None:intergenic |
| TTGAAAGGTCAGAGAATCAA+TGG | 0.506346 | 6_3:+52949764 | None:intergenic |
| GAGTTTGTTTGTCATCGTGC+TGG | 0.506578 | 6_3:-52949537 | Msa0954020:CDS |
| AAAACAAAAGGTCGACCAAA+AGG | 0.507451 | 6_3:-52947576 | Msa0954020:CDS |
| AATTTCTAGACATTGAACTA+AGG | 0.509157 | 6_3:+52947755 | None:intergenic |
| GCTGGAATACTTCGATAAGC+AGG | 0.512358 | 6_3:+52949327 | None:intergenic |
| CTTTATCATCTAATAACTCA+TGG | 0.514899 | 6_3:+52949364 | None:intergenic |
| CTAAGGACCTAAACTTAACA+AGG | 0.515538 | 6_3:+52947772 | None:intergenic |
| AGGAAGATACTTGGAAGGGA+GGG | 0.517778 | 6_3:+52947863 | None:intergenic |
| AATCGTTACGACATGCCGCT+TGG | 0.519527 | 6_3:-52948958 | Msa0954020:CDS |
| ATACGATCTTGATCAATAGC+TGG | 0.520246 | 6_3:+52949309 | None:intergenic |
| TGAGATAATTATGTCCATTG+AGG | 0.520269 | 6_3:-52949850 | None:intergenic |
| AGCCATGCCTCAAGAAAAGT+TGG | 0.525481 | 6_3:-52947661 | Msa0954020:CDS |
| ATCAATCCATTGTTCTTGCA+AGG | 0.526683 | 6_3:-52947952 | Msa0954020:CDS |
| TACCTTTATAGCCCATGTAA+AGG | 0.539233 | 6_3:+52948858 | None:intergenic |
| AAGTGGAAGGTAAAAGGAAA+CGG | 0.542859 | 6_3:-52949488 | Msa0954020:CDS |
| TTCTGTTCCTTATGAAGGAA+AGG | 0.547107 | 6_3:-52949697 | Msa0954020:CDS |
| CGAAGAGGAAGATACTTGGA+AGG | 0.558742 | 6_3:+52947858 | None:intergenic |
| GGTATTTAACAGTGATGATG+AGG | 0.560265 | 6_3:-52949676 | Msa0954020:CDS |
| CAAATCTATTAAGAATCAGT+CGG | 0.561407 | 6_3:-52949589 | Msa0954020:CDS |
| TCCATGTTGCGGCTCTTGAA+AGG | 0.562596 | 6_3:+52949749 | None:intergenic |
| CATTGTCATGTTCCAAATTG+CGG | 0.563875 | 6_3:-52947510 | Msa0954020:CDS |
| AAGGTCGACCAAAAGGATCA+AGG | 0.568587 | 6_3:-52947569 | Msa0954020:CDS |
| GAAGATTCCTTCCTTTACAT+GGG | 0.569744 | 6_3:-52948869 | Msa0954020:CDS |
| GTTAACATTAGAAATCAAGC+TGG | 0.579097 | 6_3:-52948206 | Msa0954020:CDS |
| CGTAGACAAAGATAATGAAG+TGG | 0.583069 | 6_3:-52949505 | Msa0954020:CDS |
| AATGGAAGAGAAAACCAAGT+TGG | 0.583280 | 6_3:+52948617 | None:intergenic |
| TTTATAGCCCATGTAAAGGA+AGG | 0.583563 | 6_3:+52948862 | None:intergenic |
| CTTTCTTGTCTCCAACGAAG+AGG | 0.594476 | 6_3:+52947843 | None:intergenic |
| TGAGGCAAAGGTCCATGTTG+CGG | 0.597181 | 6_3:+52949738 | None:intergenic |
| GACAAAGATAATGAAGTGGA+AGG | 0.597807 | 6_3:-52949501 | Msa0954020:CDS |
| GAAGTCCTTCAAATAAGCTA+GGG | 0.599709 | 6_3:+52948436 | None:intergenic |
| GAGGAAGATACTTGGAAGGG+AGG | 0.601334 | 6_3:+52947862 | None:intergenic |
| ACCTTTCAAGAGCCGCAACA+TGG | 0.604499 | 6_3:-52949750 | Msa0954020:CDS |
| TGTCATGTTCCAAATTGCGG+TGG | 0.607106 | 6_3:-52947507 | Msa0954020:CDS |
| TTTAGTATATGAAGATGATG+AGG | 0.619760 | 6_3:-52949787 | Msa0954020:CDS |
| ATGTTCTAATACGAGGATTG+TGG | 0.629226 | 6_3:+52948156 | None:intergenic |
| CGACATCATACCAAAAGTGA+CGG | 0.631042 | 6_3:-52948008 | Msa0954020:CDS |
| CATGCCTCAAGAAAAGTTGG+TGG | 0.631668 | 6_3:-52947658 | Msa0954020:CDS |
| AATGAAAGAAGCTATTGCAA+TGG | 0.632777 | 6_3:-52948693 | Msa0954020:CDS |
| AATTTCATTCAATCTCAAAG+TGG | 0.633071 | 6_3:-52949177 | Msa0954020:CDS |
| CACATGATTAACAACAATGG+TGG | 0.633540 | 6_3:-52947798 | Msa0954020:CDS |
| CTTGTATCCAACTTACAAAG+CGG | 0.636419 | 6_3:+52947982 | None:intergenic |
| AAACGGAAGTCGTCAAGATG+TGG | 0.638263 | 6_3:-52949471 | Msa0954020:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.640164 | 6_3:+52947429 | None:intergenic |
| TCATCAATGTGATTGGCTTG+AGG | 0.640180 | 6_3:+52949720 | None:intergenic |
| AAGTCGTCAAGATGTGGTTG+TGG | 0.648789 | 6_3:-52949465 | Msa0954020:CDS |
| ATGCCTCAAGAAAAGTTGGT+GGG | 0.657094 | 6_3:-52947657 | Msa0954020:CDS |
| AGTCACATGATTAACAACAA+TGG | 0.669494 | 6_3:-52947801 | Msa0954020:CDS |
| ACCCCAACCAAAATACCAAG+CGG | 0.669960 | 6_3:+52948943 | None:intergenic |
| TAAGGACCTAAACTTAACAA+GGG | 0.674248 | 6_3:+52947773 | None:intergenic |
| ATAAGGTGTAAGAATAGATG+CGG | 0.674460 | 6_3:+52948112 | None:intergenic |
| GAAGAGGAAGATACTTGGAA+GGG | 0.674893 | 6_3:+52947859 | None:intergenic |
| GTGGAACTGATCATGACTCG+AGG | 0.680713 | 6_3:-52947488 | Msa0954020:CDS |
| AAAGGATCAAGGCTAAAAGG+AGG | 0.688106 | 6_3:-52947558 | Msa0954020:CDS |
| CATCATACCAAAAGTGACGG+AGG | 0.689601 | 6_3:-52948005 | Msa0954020:CDS |
| GGAAAACATGTTCTAATACG+AGG | 0.689981 | 6_3:+52948149 | None:intergenic |
| CATTGAGGGAAGAAATGAGT+GGG | 0.697138 | 6_3:-52949835 | Msa0954020:CDS |
| CCATTGAGGGAAGAAATGAG+TGG | 0.712379 | 6_3:-52949836 | Msa0954020:CDS |
| TTTGGAACATGACAATGACG+AGG | 0.714978 | 6_3:+52947516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATATTTTTCTTTTTATT+TGG | + | chr6_3:52949812-52949831 | None:intergenic | 10.0% |
| !!! | TCAATATTTTTCTTTTTATT+TGG | + | chr6_3:52949812-52949831 | None:intergenic | 10.0% |
| !! | TTCATATATAAAAAGATTCC+TGG | - | chr6_3:52948899-52948918 | Msa0954020:CDS | 20.0% |
| !! | TCATATATAAAAAGATTCCT+GGG | - | chr6_3:52948900-52948919 | Msa0954020:CDS | 20.0% |
| !! | TAATTAATATATTGTTGTGC+AGG | - | chr6_3:52949028-52949047 | Msa0954020:CDS | 20.0% |
| !! | TTCATATATAAAAAGATTCC+TGG | - | chr6_3:52948899-52948918 | Msa0954020:CDS | 20.0% |
| !! | TCATATATAAAAAGATTCCT+GGG | - | chr6_3:52948900-52948919 | Msa0954020:CDS | 20.0% |
| !! | TAATTAATATATTGTTGTGC+AGG | - | chr6_3:52949028-52949047 | Msa0954020:CDS | 20.0% |
| ! | TTTAGTATATGAAGATGATG+AGG | - | chr6_3:52947481-52947500 | Msa0954020:CDS | 25.0% |
| ! | TTAAATACCTTTCCTTCATA+AGG | + | chr6_3:52947581-52947600 | None:intergenic | 25.0% |
| ! | CAAATCTATTAAGAATCAGT+CGG | - | chr6_3:52947679-52947698 | Msa0954020:CDS | 25.0% |
| !! | TCTCTTTTATAAACACCTAA+TGG | + | chr6_3:52947713-52947732 | None:intergenic | 25.0% |
| !! | AATTAACTCTGAGAAAAAGT+GGG | - | chr6_3:52947853-52947872 | Msa0954020:CDS | 25.0% |
| ! | CTTTATCATCTAATAACTCA+TGG | + | chr6_3:52947907-52947926 | None:intergenic | 25.0% |
| ! | TGAGTTATTAGATGATAAAG+AGG | - | chr6_3:52947907-52947926 | Msa0954020:CDS | 25.0% |
| ! | CTAATGTCTTTATCCAAAAA+TGG | + | chr6_3:52948070-52948089 | None:intergenic | 25.0% |
| ! | AATTTCATTCAATCTCAAAG+TGG | - | chr6_3:52948091-52948110 | Msa0954020:CDS | 25.0% |
| ! | AATCGACGAAAATAACAAAT+TGG | - | chr6_3:52948201-52948220 | Msa0954020:CDS | 25.0% |
| ! | GGTACATTTCTATTTATTTG+AGG | - | chr6_3:52948429-52948448 | Msa0954020:CDS | 25.0% |
| !!! | ACTTTTCTTAGTTTTGTCAA+AGG | - | chr6_3:52948513-52948532 | Msa0954020:CDS | 25.0% |
| ! | AATCATCTTCACATTCTAAA+TGG | + | chr6_3:52948722-52948741 | None:intergenic | 25.0% |
| !! | TATTATGTAGACATGCTTTT+CGG | - | chr6_3:52949357-52949376 | Msa0954020:CDS | 25.0% |
| !! | TTAATCATGTGACTAGATTT+TGG | + | chr6_3:52949461-52949480 | None:intergenic | 25.0% |
| !! | AATTTCTAGACATTGAACTA+AGG | + | chr6_3:52949516-52949535 | None:intergenic | 25.0% |
| ! | TTTAGTATATGAAGATGATG+AGG | - | chr6_3:52947481-52947500 | Msa0954020:CDS | 25.0% |
| ! | TTAAATACCTTTCCTTCATA+AGG | + | chr6_3:52947581-52947600 | None:intergenic | 25.0% |
| ! | CAAATCTATTAAGAATCAGT+CGG | - | chr6_3:52947679-52947698 | Msa0954020:CDS | 25.0% |
| !! | TCTCTTTTATAAACACCTAA+TGG | + | chr6_3:52947713-52947732 | None:intergenic | 25.0% |
| !! | AATTAACTCTGAGAAAAAGT+GGG | - | chr6_3:52947853-52947872 | Msa0954020:CDS | 25.0% |
| ! | CTTTATCATCTAATAACTCA+TGG | + | chr6_3:52947907-52947926 | None:intergenic | 25.0% |
| ! | TGAGTTATTAGATGATAAAG+AGG | - | chr6_3:52947907-52947926 | Msa0954020:CDS | 25.0% |
| ! | CTAATGTCTTTATCCAAAAA+TGG | + | chr6_3:52948070-52948089 | None:intergenic | 25.0% |
| ! | AATTTCATTCAATCTCAAAG+TGG | - | chr6_3:52948091-52948110 | Msa0954020:CDS | 25.0% |
| ! | AATCGACGAAAATAACAAAT+TGG | - | chr6_3:52948201-52948220 | Msa0954020:CDS | 25.0% |
| ! | GGTACATTTCTATTTATTTG+AGG | - | chr6_3:52948429-52948448 | Msa0954020:CDS | 25.0% |
| !!! | ACTTTTCTTAGTTTTGTCAA+AGG | - | chr6_3:52948513-52948532 | Msa0954020:CDS | 25.0% |
| ! | AATCATCTTCACATTCTAAA+TGG | + | chr6_3:52948722-52948741 | None:intergenic | 25.0% |
| !! | TATTATGTAGACATGCTTTT+CGG | - | chr6_3:52949357-52949376 | Msa0954020:CDS | 25.0% |
| !! | TTAATCATGTGACTAGATTT+TGG | + | chr6_3:52949461-52949480 | None:intergenic | 25.0% |
| !! | AATTTCTAGACATTGAACTA+AGG | + | chr6_3:52949516-52949535 | None:intergenic | 25.0% |
| AACAGAATCATCAATGTGAT+TGG | + | chr6_3:52947558-52947577 | None:intergenic | 30.0% | |
| TGTTTGTTTGCTCGAAAAAA+TGG | - | chr6_3:52947629-52947648 | Msa0954020:CDS | 30.0% | |
| ATAATGAAGTGGAAGGTAAA+AGG | - | chr6_3:52947774-52947793 | Msa0954020:CDS | 30.0% | |
| ! | CAATTAACTCTGAGAAAAAG+TGG | - | chr6_3:52947852-52947871 | Msa0954020:CDS | 30.0% |
| !! | ATTCTTTTGTTGTCAAAAGC+TGG | - | chr6_3:52947980-52947999 | Msa0954020:CDS | 30.0% |
| ATTCAATCTCAAAGTGGTAT+TGG | - | chr6_3:52948097-52948116 | Msa0954020:CDS | 30.0% | |
| ACAAATTGGAGCACATTATT+TGG | - | chr6_3:52948215-52948234 | Msa0954020:CDS | 30.0% | |
| CAAATTGGAGCACATTATTT+GGG | - | chr6_3:52948216-52948235 | Msa0954020:CDS | 30.0% | |
| GTAACGATTTATTCGATAAG+TGG | + | chr6_3:52948299-52948318 | None:intergenic | 30.0% | |
| TAGAACACAACCAAAGAAAA+TGG | + | chr6_3:52948368-52948387 | None:intergenic | 30.0% | |
| TGATCTGTAAGAATTGTTTG+TGG | + | chr6_3:52948546-52948565 | None:intergenic | 30.0% | |
| AATGAAAGAAGCTATTGCAA+TGG | - | chr6_3:52948575-52948594 | Msa0954020:CDS | 30.0% | |
| ! | AATGTGAAGATGATTTTGAG+AGG | - | chr6_3:52948727-52948746 | Msa0954020:CDS | 30.0% |
| !! | ATGTGAAGATGATTTTGAGA+GGG | - | chr6_3:52948728-52948747 | Msa0954020:CDS | 30.0% |
| TAATATATTGTTGTGCAGGT+TGG | - | chr6_3:52949032-52949051 | Msa0954020:CDS | 30.0% | |
| AATATATTGTTGTGCAGGTT+GGG | - | chr6_3:52949033-52949052 | Msa0954020:CDS | 30.0% | |
| GTTAACATTAGAAATCAAGC+TGG | - | chr6_3:52949062-52949081 | Msa0954020:CDS | 30.0% | |
| ! | TAGAACATGTTTTCCTATTG+AGG | - | chr6_3:52949127-52949146 | Msa0954020:CDS | 30.0% |
| ATAAGGTGTAAGAATAGATG+CGG | + | chr6_3:52949159-52949178 | None:intergenic | 30.0% | |
| ! | TGAATCAACTTAAAGGCATA+AGG | + | chr6_3:52949176-52949195 | None:intergenic | 30.0% |
| CTCATGTTGAATCAACTTAA+AGG | + | chr6_3:52949183-52949202 | None:intergenic | 30.0% | |
| ! | TGCAAGGAATTTGAATTTTC+TGG | - | chr6_3:52949332-52949351 | Msa0954020:CDS | 30.0% |
| ! | GCAAGGAATTTGAATTTTCT+GGG | - | chr6_3:52949333-52949352 | Msa0954020:CDS | 30.0% |
| ! | ATTATGTAGACATGCTTTTC+GGG | - | chr6_3:52949358-52949377 | Msa0954020:CDS | 30.0% |
| AGTCACATGATTAACAACAA+TGG | - | chr6_3:52949467-52949486 | Msa0954020:CDS | 30.0% | |
| TAAGGACCTAAACTTAACAA+GGG | + | chr6_3:52949498-52949517 | None:intergenic | 30.0% | |
| ACATTCAACTCATCATTATC+TGG | + | chr6_3:52949653-52949672 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTTTTTGAAGGTAA+AGG | + | chr6_3:52949683-52949702 | None:intergenic | 30.0% |
| CCTTTACCTTCAAAAACAAA+AGG | - | chr6_3:52949680-52949699 | Msa0954020:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | + | chr6_3:52949842-52949861 | None:intergenic | 30.0% | |
| AACAGAATCATCAATGTGAT+TGG | + | chr6_3:52947558-52947577 | None:intergenic | 30.0% | |
| TGTTTGTTTGCTCGAAAAAA+TGG | - | chr6_3:52947629-52947648 | Msa0954020:CDS | 30.0% | |
| ATAATGAAGTGGAAGGTAAA+AGG | - | chr6_3:52947774-52947793 | Msa0954020:CDS | 30.0% | |
| ! | CAATTAACTCTGAGAAAAAG+TGG | - | chr6_3:52947852-52947871 | Msa0954020:CDS | 30.0% |
| !! | ATTCTTTTGTTGTCAAAAGC+TGG | - | chr6_3:52947980-52947999 | Msa0954020:CDS | 30.0% |
| ATTCAATCTCAAAGTGGTAT+TGG | - | chr6_3:52948097-52948116 | Msa0954020:CDS | 30.0% | |
| ACAAATTGGAGCACATTATT+TGG | - | chr6_3:52948215-52948234 | Msa0954020:CDS | 30.0% | |
| CAAATTGGAGCACATTATTT+GGG | - | chr6_3:52948216-52948235 | Msa0954020:CDS | 30.0% | |
| GTAACGATTTATTCGATAAG+TGG | + | chr6_3:52948299-52948318 | None:intergenic | 30.0% | |
| TAGAACACAACCAAAGAAAA+TGG | + | chr6_3:52948368-52948387 | None:intergenic | 30.0% | |
| TGATCTGTAAGAATTGTTTG+TGG | + | chr6_3:52948546-52948565 | None:intergenic | 30.0% | |
| AATGAAAGAAGCTATTGCAA+TGG | - | chr6_3:52948575-52948594 | Msa0954020:CDS | 30.0% | |
| ! | AATGTGAAGATGATTTTGAG+AGG | - | chr6_3:52948727-52948746 | Msa0954020:CDS | 30.0% |
| !! | ATGTGAAGATGATTTTGAGA+GGG | - | chr6_3:52948728-52948747 | Msa0954020:CDS | 30.0% |
| TAATATATTGTTGTGCAGGT+TGG | - | chr6_3:52949032-52949051 | Msa0954020:CDS | 30.0% | |
| AATATATTGTTGTGCAGGTT+GGG | - | chr6_3:52949033-52949052 | Msa0954020:CDS | 30.0% | |
| GTTAACATTAGAAATCAAGC+TGG | - | chr6_3:52949062-52949081 | Msa0954020:CDS | 30.0% | |
| ! | TAGAACATGTTTTCCTATTG+AGG | - | chr6_3:52949127-52949146 | Msa0954020:CDS | 30.0% |
| ATAAGGTGTAAGAATAGATG+CGG | + | chr6_3:52949159-52949178 | None:intergenic | 30.0% | |
| ! | TGAATCAACTTAAAGGCATA+AGG | + | chr6_3:52949176-52949195 | None:intergenic | 30.0% |
| CTCATGTTGAATCAACTTAA+AGG | + | chr6_3:52949183-52949202 | None:intergenic | 30.0% | |
| ! | TGCAAGGAATTTGAATTTTC+TGG | - | chr6_3:52949332-52949351 | Msa0954020:CDS | 30.0% |
| ! | GCAAGGAATTTGAATTTTCT+GGG | - | chr6_3:52949333-52949352 | Msa0954020:CDS | 30.0% |
| ! | ATTATGTAGACATGCTTTTC+GGG | - | chr6_3:52949358-52949377 | Msa0954020:CDS | 30.0% |
| AGTCACATGATTAACAACAA+TGG | - | chr6_3:52949467-52949486 | Msa0954020:CDS | 30.0% | |
| TAAGGACCTAAACTTAACAA+GGG | + | chr6_3:52949498-52949517 | None:intergenic | 30.0% | |
| ACATTCAACTCATCATTATC+TGG | + | chr6_3:52949653-52949672 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTTTTTGAAGGTAA+AGG | + | chr6_3:52949683-52949702 | None:intergenic | 30.0% |
| CCTTTACCTTCAAAAACAAA+AGG | - | chr6_3:52949680-52949699 | Msa0954020:CDS | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | + | chr6_3:52949842-52949861 | None:intergenic | 30.0% | |
| TTGAAAGGTCAGAGAATCAA+TGG | + | chr6_3:52947507-52947526 | None:intergenic | 35.0% | |
| GATGATTCTGTTCCTTATGA+AGG | - | chr6_3:52947566-52947585 | Msa0954020:CDS | 35.0% | |
| TTCTGTTCCTTATGAAGGAA+AGG | - | chr6_3:52947571-52947590 | Msa0954020:CDS | 35.0% | |
| ! | GGTATTTAACAGTGATGATG+AGG | - | chr6_3:52947592-52947611 | Msa0954020:CDS | 35.0% |
| CGTAGACAAAGATAATGAAG+TGG | - | chr6_3:52947763-52947782 | Msa0954020:CDS | 35.0% | |
| GACAAAGATAATGAAGTGGA+AGG | - | chr6_3:52947767-52947786 | Msa0954020:CDS | 35.0% | |
| AAGTGGAAGGTAAAAGGAAA+CGG | - | chr6_3:52947780-52947799 | Msa0954020:CDS | 35.0% | |
| ATACGATCTTGATCAATAGC+TGG | + | chr6_3:52947962-52947981 | None:intergenic | 35.0% | |
| TTAGAGAAAAACGTAGATGC+AGG | - | chr6_3:52948037-52948056 | Msa0954020:CDS | 35.0% | |
| ! | TGCAGGAAATCTTCCATTTT+TGG | - | chr6_3:52948054-52948073 | Msa0954020:CDS | 35.0% |
| AAAAACAATCACATCTCCGA+AGG | + | chr6_3:52948272-52948291 | None:intergenic | 35.0% | |
| ! | CATGGCAATTCCATTTTCTT+TGG | - | chr6_3:52948355-52948374 | Msa0954020:CDS | 35.0% |
| AGAAGATTCCTTCCTTTACA+TGG | - | chr6_3:52948398-52948417 | Msa0954020:CDS | 35.0% | |
| GAAGATTCCTTCCTTTACAT+GGG | - | chr6_3:52948399-52948418 | Msa0954020:CDS | 35.0% | |
| TTTATAGCCCATGTAAAGGA+AGG | + | chr6_3:52948409-52948428 | None:intergenic | 35.0% | |
| ! | TTCCTTTACATGGGCTATAA+AGG | - | chr6_3:52948408-52948427 | Msa0954020:CDS | 35.0% |
| TACCTTTATAGCCCATGTAA+AGG | + | chr6_3:52948413-52948432 | None:intergenic | 35.0% | |
| CAAAATGCATGCTTTGTGTT+TGG | + | chr6_3:52948606-52948625 | None:intergenic | 35.0% | |
| ! | CAAAGCATGCATTTTGCATA+TGG | - | chr6_3:52948610-52948629 | Msa0954020:CDS | 35.0% |
| ! | ATTTTGCATATGGCATATCC+TGG | - | chr6_3:52948620-52948639 | Msa0954020:CDS | 35.0% |
| AATGGAAGAGAAAACCAAGT+TGG | + | chr6_3:52948654-52948673 | None:intergenic | 35.0% | |
| !! | ACTTGGTTTTCTCTTCCATT+AGG | - | chr6_3:52948654-52948673 | Msa0954020:CDS | 35.0% |
| !! | CTTGGTTTTCTCTTCCATTA+GGG | - | chr6_3:52948655-52948674 | Msa0954020:CDS | 35.0% |
| !! | AAGATGATTTTGAGAGGGAA+TGG | - | chr6_3:52948733-52948752 | Msa0954020:CDS | 35.0% |
| !! | TGAACAGTTTTGTCTTAGCA+AGG | - | chr6_3:52948767-52948786 | Msa0954020:intron | 35.0% |
| GCGAATAGAGCAAGTAAATA+TGG | + | chr6_3:52948797-52948816 | None:intergenic | 35.0% | |
| ! | TCTATTCGCTTCGTCAATTT+TGG | - | chr6_3:52948808-52948827 | Msa0954020:intron | 35.0% |
| ! | CTATTCGCTTCGTCAATTTT+GGG | - | chr6_3:52948809-52948828 | Msa0954020:intron | 35.0% |
| GAAGTCCTTCAAATAAGCTA+GGG | + | chr6_3:52948835-52948854 | None:intergenic | 35.0% | |
| AGAAGTCCTTCAAATAAGCT+AGG | + | chr6_3:52948836-52948855 | None:intergenic | 35.0% | |
| !!! | TTGAAGGACTTCTTTTTTGC+TGG | - | chr6_3:52948843-52948862 | Msa0954020:intron | 35.0% |
| GAAATCAGTCAGACTTGTAT+TGG | + | chr6_3:52948928-52948947 | None:intergenic | 35.0% | |
| ATATATTGTTGTGCAGGTTG+GGG | - | chr6_3:52949034-52949053 | Msa0954020:CDS | 35.0% | |
| ATGTTCTAATACGAGGATTG+TGG | + | chr6_3:52949115-52949134 | None:intergenic | 35.0% | |
| GGAAAACATGTTCTAATACG+AGG | + | chr6_3:52949122-52949141 | None:intergenic | 35.0% | |
| CTTGTATCCAACTTACAAAG+CGG | + | chr6_3:52949289-52949308 | None:intergenic | 35.0% | |
| ATCAATCCATTGTTCTTGCA+AGG | - | chr6_3:52949316-52949335 | Msa0954020:CDS | 35.0% | |
| CAAATTCCTTGCAAGAACAA+TGG | + | chr6_3:52949325-52949344 | None:intergenic | 35.0% | |
| CACATGATTAACAACAATGG+TGG | - | chr6_3:52949470-52949489 | Msa0954020:CDS | 35.0% | |
| CTAAGGACCTAAACTTAACA+AGG | + | chr6_3:52949499-52949518 | None:intergenic | 35.0% | |
| ! | TTCTCGTTCTTTTGTCTTCA+AGG | + | chr6_3:52949543-52949562 | None:intergenic | 35.0% |
| !! | CATGGCTTTAATCACTTGAA+TGG | + | chr6_3:52949594-52949613 | None:intergenic | 35.0% |
| AAAACAAAAGGTCGACCAAA+AGG | - | chr6_3:52949692-52949711 | Msa0954020:CDS | 35.0% | |
| CATTGTCATGTTCCAAATTG+CGG | - | chr6_3:52949758-52949777 | Msa0954020:CDS | 35.0% | |
| TTGAAAGGTCAGAGAATCAA+TGG | + | chr6_3:52947507-52947526 | None:intergenic | 35.0% | |
| GATGATTCTGTTCCTTATGA+AGG | - | chr6_3:52947566-52947585 | Msa0954020:CDS | 35.0% | |
| TTCTGTTCCTTATGAAGGAA+AGG | - | chr6_3:52947571-52947590 | Msa0954020:CDS | 35.0% | |
| ! | GGTATTTAACAGTGATGATG+AGG | - | chr6_3:52947592-52947611 | Msa0954020:CDS | 35.0% |
| CGTAGACAAAGATAATGAAG+TGG | - | chr6_3:52947763-52947782 | Msa0954020:CDS | 35.0% | |
| GACAAAGATAATGAAGTGGA+AGG | - | chr6_3:52947767-52947786 | Msa0954020:CDS | 35.0% | |
| AAGTGGAAGGTAAAAGGAAA+CGG | - | chr6_3:52947780-52947799 | Msa0954020:CDS | 35.0% | |
| ATACGATCTTGATCAATAGC+TGG | + | chr6_3:52947962-52947981 | None:intergenic | 35.0% | |
| TTAGAGAAAAACGTAGATGC+AGG | - | chr6_3:52948037-52948056 | Msa0954020:CDS | 35.0% | |
| ! | TGCAGGAAATCTTCCATTTT+TGG | - | chr6_3:52948054-52948073 | Msa0954020:CDS | 35.0% |
| AAAAACAATCACATCTCCGA+AGG | + | chr6_3:52948272-52948291 | None:intergenic | 35.0% | |
| ! | CATGGCAATTCCATTTTCTT+TGG | - | chr6_3:52948355-52948374 | Msa0954020:CDS | 35.0% |
| AGAAGATTCCTTCCTTTACA+TGG | - | chr6_3:52948398-52948417 | Msa0954020:CDS | 35.0% | |
| GAAGATTCCTTCCTTTACAT+GGG | - | chr6_3:52948399-52948418 | Msa0954020:CDS | 35.0% | |
| TTTATAGCCCATGTAAAGGA+AGG | + | chr6_3:52948409-52948428 | None:intergenic | 35.0% | |
| ! | TTCCTTTACATGGGCTATAA+AGG | - | chr6_3:52948408-52948427 | Msa0954020:CDS | 35.0% |
| TACCTTTATAGCCCATGTAA+AGG | + | chr6_3:52948413-52948432 | None:intergenic | 35.0% | |
| CAAAATGCATGCTTTGTGTT+TGG | + | chr6_3:52948606-52948625 | None:intergenic | 35.0% | |
| ! | CAAAGCATGCATTTTGCATA+TGG | - | chr6_3:52948610-52948629 | Msa0954020:CDS | 35.0% |
| ! | ATTTTGCATATGGCATATCC+TGG | - | chr6_3:52948620-52948639 | Msa0954020:CDS | 35.0% |
| AATGGAAGAGAAAACCAAGT+TGG | + | chr6_3:52948654-52948673 | None:intergenic | 35.0% | |
| !! | ACTTGGTTTTCTCTTCCATT+AGG | - | chr6_3:52948654-52948673 | Msa0954020:CDS | 35.0% |
| !! | CTTGGTTTTCTCTTCCATTA+GGG | - | chr6_3:52948655-52948674 | Msa0954020:CDS | 35.0% |
| !! | AAGATGATTTTGAGAGGGAA+TGG | - | chr6_3:52948733-52948752 | Msa0954020:CDS | 35.0% |
| !! | TGAACAGTTTTGTCTTAGCA+AGG | - | chr6_3:52948767-52948786 | Msa0954020:intron | 35.0% |
| GCGAATAGAGCAAGTAAATA+TGG | + | chr6_3:52948797-52948816 | None:intergenic | 35.0% | |
| ! | TCTATTCGCTTCGTCAATTT+TGG | - | chr6_3:52948808-52948827 | Msa0954020:intron | 35.0% |
| ! | CTATTCGCTTCGTCAATTTT+GGG | - | chr6_3:52948809-52948828 | Msa0954020:intron | 35.0% |
| GAAGTCCTTCAAATAAGCTA+GGG | + | chr6_3:52948835-52948854 | None:intergenic | 35.0% | |
| AGAAGTCCTTCAAATAAGCT+AGG | + | chr6_3:52948836-52948855 | None:intergenic | 35.0% | |
| !!! | TTGAAGGACTTCTTTTTTGC+TGG | - | chr6_3:52948843-52948862 | Msa0954020:intron | 35.0% |
| GAAATCAGTCAGACTTGTAT+TGG | + | chr6_3:52948928-52948947 | None:intergenic | 35.0% | |
| ATATATTGTTGTGCAGGTTG+GGG | - | chr6_3:52949034-52949053 | Msa0954020:CDS | 35.0% | |
| ATGTTCTAATACGAGGATTG+TGG | + | chr6_3:52949115-52949134 | None:intergenic | 35.0% | |
| GGAAAACATGTTCTAATACG+AGG | + | chr6_3:52949122-52949141 | None:intergenic | 35.0% | |
| CTTGTATCCAACTTACAAAG+CGG | + | chr6_3:52949289-52949308 | None:intergenic | 35.0% | |
| ATCAATCCATTGTTCTTGCA+AGG | - | chr6_3:52949316-52949335 | Msa0954020:CDS | 35.0% | |
| CAAATTCCTTGCAAGAACAA+TGG | + | chr6_3:52949325-52949344 | None:intergenic | 35.0% | |
| CACATGATTAACAACAATGG+TGG | - | chr6_3:52949470-52949489 | Msa0954020:CDS | 35.0% | |
| CTAAGGACCTAAACTTAACA+AGG | + | chr6_3:52949499-52949518 | None:intergenic | 35.0% | |
| ! | TTCTCGTTCTTTTGTCTTCA+AGG | + | chr6_3:52949543-52949562 | None:intergenic | 35.0% |
| !! | CATGGCTTTAATCACTTGAA+TGG | + | chr6_3:52949594-52949613 | None:intergenic | 35.0% |
| AAAACAAAAGGTCGACCAAA+AGG | - | chr6_3:52949692-52949711 | Msa0954020:CDS | 35.0% | |
| CATTGTCATGTTCCAAATTG+CGG | - | chr6_3:52949758-52949777 | Msa0954020:CDS | 35.0% | |
| CATTGAGGGAAGAAATGAGT+GGG | - | chr6_3:52947433-52947452 | Msa0954020:CDS | 40.0% | |
| !! | TCATCAATGTGATTGGCTTG+AGG | + | chr6_3:52947551-52947570 | None:intergenic | 40.0% |
| CAGTCGGAAGATAATCCATT+AGG | - | chr6_3:52947695-52947714 | Msa0954020:CDS | 40.0% | |
| ! | TGGTTGTGGTGCTAAATTGT+TGG | - | chr6_3:52947817-52947836 | Msa0954020:CDS | 40.0% |
| ! | TAACTCTGAGAAAAAGTGGG+TGG | - | chr6_3:52947856-52947875 | Msa0954020:CDS | 40.0% |
| GAGCACATTATTTGGGCATT+TGG | - | chr6_3:52948223-52948242 | Msa0954020:intron | 40.0% | |
| ATTCGAGCATATGAAGCCTT+CGG | - | chr6_3:52948253-52948272 | Msa0954020:intron | 40.0% | |
| TGAGAGGGAATGGAAATTGA+TGG | - | chr6_3:52948743-52948762 | Msa0954020:CDS | 40.0% | |
| TTTGCTGGAATGACTACAAC+TGG | - | chr6_3:52948858-52948877 | Msa0954020:intron | 40.0% | |
| ! | TACGAGGATTGTGGTACTTT+TGG | + | chr6_3:52949106-52949125 | None:intergenic | 40.0% |
| CGACATCATACCAAAAGTGA+CGG | - | chr6_3:52949260-52949279 | Msa0954020:CDS | 40.0% | |
| GAAGAGGAAGATACTTGGAA+GGG | + | chr6_3:52949412-52949431 | None:intergenic | 40.0% | |
| ! | ATGCCTCAAGAAAAGTTGGT+GGG | - | chr6_3:52949611-52949630 | Msa0954020:CDS | 40.0% |
| !!! | GGTCGACCTTTTGTTTTTGA+AGG | + | chr6_3:52949689-52949708 | None:intergenic | 40.0% |
| !!! | CCTTTTAGCCTTGATCCTTT+TGG | + | chr6_3:52949710-52949729 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGGCTAAA+AGG | - | chr6_3:52949707-52949726 | Msa0954020:CDS | 40.0% | |
| AAAGGATCAAGGCTAAAAGG+AGG | - | chr6_3:52949710-52949729 | Msa0954020:CDS | 40.0% | |
| ! | TTTGGAACATGACAATGACG+AGG | + | chr6_3:52949755-52949774 | None:intergenic | 40.0% |
| CATTGAGGGAAGAAATGAGT+GGG | - | chr6_3:52947433-52947452 | Msa0954020:CDS | 40.0% | |
| !! | TCATCAATGTGATTGGCTTG+AGG | + | chr6_3:52947551-52947570 | None:intergenic | 40.0% |
| CAGTCGGAAGATAATCCATT+AGG | - | chr6_3:52947695-52947714 | Msa0954020:CDS | 40.0% | |
| ! | TGGTTGTGGTGCTAAATTGT+TGG | - | chr6_3:52947817-52947836 | Msa0954020:CDS | 40.0% |
| ! | TAACTCTGAGAAAAAGTGGG+TGG | - | chr6_3:52947856-52947875 | Msa0954020:CDS | 40.0% |
| GAGCACATTATTTGGGCATT+TGG | - | chr6_3:52948223-52948242 | Msa0954020:intron | 40.0% | |
| ATTCGAGCATATGAAGCCTT+CGG | - | chr6_3:52948253-52948272 | Msa0954020:intron | 40.0% | |
| TGAGAGGGAATGGAAATTGA+TGG | - | chr6_3:52948743-52948762 | Msa0954020:CDS | 40.0% | |
| TTTGCTGGAATGACTACAAC+TGG | - | chr6_3:52948858-52948877 | Msa0954020:intron | 40.0% | |
| ! | TACGAGGATTGTGGTACTTT+TGG | + | chr6_3:52949106-52949125 | None:intergenic | 40.0% |
| CGACATCATACCAAAAGTGA+CGG | - | chr6_3:52949260-52949279 | Msa0954020:CDS | 40.0% | |
| GAAGAGGAAGATACTTGGAA+GGG | + | chr6_3:52949412-52949431 | None:intergenic | 40.0% | |
| ! | ATGCCTCAAGAAAAGTTGGT+GGG | - | chr6_3:52949611-52949630 | Msa0954020:CDS | 40.0% |
| !!! | GGTCGACCTTTTGTTTTTGA+AGG | + | chr6_3:52949689-52949708 | None:intergenic | 40.0% |
| !!! | CCTTTTAGCCTTGATCCTTT+TGG | + | chr6_3:52949710-52949729 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGGCTAAA+AGG | - | chr6_3:52949707-52949726 | Msa0954020:CDS | 40.0% | |
| AAAGGATCAAGGCTAAAAGG+AGG | - | chr6_3:52949710-52949729 | Msa0954020:CDS | 40.0% | |
| ! | TTTGGAACATGACAATGACG+AGG | + | chr6_3:52949755-52949774 | None:intergenic | 40.0% |
| CCACTCATTTCTTCCCTCAA+TGG | + | chr6_3:52947435-52947454 | None:intergenic | 45.0% | |
| CCATTGAGGGAAGAAATGAG+TGG | - | chr6_3:52947432-52947451 | Msa0954020:CDS | 45.0% | |
| !! | ATGTGATTGGCTTGAGGCAA+AGG | + | chr6_3:52947545-52947564 | None:intergenic | 45.0% |
| ! | GAGTTTGTTTGTCATCGTGC+TGG | - | chr6_3:52947731-52947750 | Msa0954020:CDS | 45.0% |
| AAACGGAAGTCGTCAAGATG+TGG | - | chr6_3:52947797-52947816 | Msa0954020:CDS | 45.0% | |
| AAGTCGTCAAGATGTGGTTG+TGG | - | chr6_3:52947803-52947822 | Msa0954020:CDS | 45.0% | |
| GCTGGAATACTTCGATAAGC+AGG | + | chr6_3:52947944-52947963 | None:intergenic | 45.0% | |
| !!! | ATGCCGCTTGGTATTTTGGT+TGG | - | chr6_3:52948322-52948341 | Msa0954020:intron | 45.0% |
| !!! | TGCCGCTTGGTATTTTGGTT+GGG | - | chr6_3:52948323-52948342 | Msa0954020:intron | 45.0% |
| ACCCCAACCAAAATACCAAG+CGG | + | chr6_3:52948328-52948347 | None:intergenic | 45.0% | |
| TTGGTTGGGGTCGATAATCA+TGG | - | chr6_3:52948337-52948356 | Msa0954020:CDS | 45.0% | |
| TCCTGGCAAAGTTACCAACT+TGG | - | chr6_3:52948637-52948656 | Msa0954020:CDS | 45.0% | |
| !! | ACCAAGTTGGTAACTTTGCC+AGG | + | chr6_3:52948641-52948660 | None:intergenic | 45.0% |
| TCATCGTATCTCGACCCTAA+TGG | + | chr6_3:52948672-52948691 | None:intergenic | 45.0% | |
| TTGGGCCCTAGCTTATTTGA+AGG | - | chr6_3:52948827-52948846 | Msa0954020:intron | 45.0% | |
| CATCATACCAAAAGTGACGG+AGG | - | chr6_3:52949263-52949282 | Msa0954020:CDS | 45.0% | |
| AGGAAGATACTTGGAAGGGA+GGG | + | chr6_3:52949408-52949427 | None:intergenic | 45.0% | |
| CGAAGAGGAAGATACTTGGA+AGG | + | chr6_3:52949413-52949432 | None:intergenic | 45.0% | |
| CCAACGAAGAGGAAGATACT+TGG | + | chr6_3:52949417-52949436 | None:intergenic | 45.0% | |
| CCAAGTATCTTCCTCTTCGT+TGG | - | chr6_3:52949414-52949433 | Msa0954020:CDS | 45.0% | |
| CTTTCTTGTCTCCAACGAAG+AGG | + | chr6_3:52949428-52949447 | None:intergenic | 45.0% | |
| GTGGCTCCCTTGTTAAGTTT+AGG | - | chr6_3:52949489-52949508 | Msa0954020:CDS | 45.0% | |
| AGCCATGCCTCAAGAAAAGT+TGG | - | chr6_3:52949607-52949626 | Msa0954020:CDS | 45.0% | |
| ! | CACCAACTTTTCTTGAGGCA+TGG | + | chr6_3:52949612-52949631 | None:intergenic | 45.0% |
| CATGCCTCAAGAAAAGTTGG+TGG | - | chr6_3:52949610-52949629 | Msa0954020:CDS | 45.0% | |
| ! | ACACCCACCAACTTTTCTTG+AGG | + | chr6_3:52949617-52949636 | None:intergenic | 45.0% |
| !! | GTTGGTGGGTGTTGATTCTA+CGG | - | chr6_3:52949625-52949644 | Msa0954020:CDS | 45.0% |
| AAGGTCGACCAAAAGGATCA+AGG | - | chr6_3:52949699-52949718 | Msa0954020:CDS | 45.0% | |
| TGTCATGTTCCAAATTGCGG+TGG | - | chr6_3:52949761-52949780 | Msa0954020:CDS | 45.0% | |
| TGATCAGTTCCACCGCAATT+TGG | + | chr6_3:52949773-52949792 | None:intergenic | 45.0% | |
| CCACTCATTTCTTCCCTCAA+TGG | + | chr6_3:52947435-52947454 | None:intergenic | 45.0% | |
| CCATTGAGGGAAGAAATGAG+TGG | - | chr6_3:52947432-52947451 | Msa0954020:CDS | 45.0% | |
| !! | ATGTGATTGGCTTGAGGCAA+AGG | + | chr6_3:52947545-52947564 | None:intergenic | 45.0% |
| ! | GAGTTTGTTTGTCATCGTGC+TGG | - | chr6_3:52947731-52947750 | Msa0954020:CDS | 45.0% |
| AAACGGAAGTCGTCAAGATG+TGG | - | chr6_3:52947797-52947816 | Msa0954020:CDS | 45.0% | |
| AAGTCGTCAAGATGTGGTTG+TGG | - | chr6_3:52947803-52947822 | Msa0954020:CDS | 45.0% | |
| GCTGGAATACTTCGATAAGC+AGG | + | chr6_3:52947944-52947963 | None:intergenic | 45.0% | |
| !!! | ATGCCGCTTGGTATTTTGGT+TGG | - | chr6_3:52948322-52948341 | Msa0954020:intron | 45.0% |
| !!! | TGCCGCTTGGTATTTTGGTT+GGG | - | chr6_3:52948323-52948342 | Msa0954020:intron | 45.0% |
| ACCCCAACCAAAATACCAAG+CGG | + | chr6_3:52948328-52948347 | None:intergenic | 45.0% | |
| TTGGTTGGGGTCGATAATCA+TGG | - | chr6_3:52948337-52948356 | Msa0954020:CDS | 45.0% | |
| TCCTGGCAAAGTTACCAACT+TGG | - | chr6_3:52948637-52948656 | Msa0954020:CDS | 45.0% | |
| !! | ACCAAGTTGGTAACTTTGCC+AGG | + | chr6_3:52948641-52948660 | None:intergenic | 45.0% |
| TCATCGTATCTCGACCCTAA+TGG | + | chr6_3:52948672-52948691 | None:intergenic | 45.0% | |
| TTGGGCCCTAGCTTATTTGA+AGG | - | chr6_3:52948827-52948846 | Msa0954020:intron | 45.0% | |
| CATCATACCAAAAGTGACGG+AGG | - | chr6_3:52949263-52949282 | Msa0954020:CDS | 45.0% | |
| AGGAAGATACTTGGAAGGGA+GGG | + | chr6_3:52949408-52949427 | None:intergenic | 45.0% | |
| CGAAGAGGAAGATACTTGGA+AGG | + | chr6_3:52949413-52949432 | None:intergenic | 45.0% | |
| CCAACGAAGAGGAAGATACT+TGG | + | chr6_3:52949417-52949436 | None:intergenic | 45.0% | |
| CCAAGTATCTTCCTCTTCGT+TGG | - | chr6_3:52949414-52949433 | Msa0954020:CDS | 45.0% | |
| CTTTCTTGTCTCCAACGAAG+AGG | + | chr6_3:52949428-52949447 | None:intergenic | 45.0% | |
| GTGGCTCCCTTGTTAAGTTT+AGG | - | chr6_3:52949489-52949508 | Msa0954020:CDS | 45.0% | |
| AGCCATGCCTCAAGAAAAGT+TGG | - | chr6_3:52949607-52949626 | Msa0954020:CDS | 45.0% | |
| ! | CACCAACTTTTCTTGAGGCA+TGG | + | chr6_3:52949612-52949631 | None:intergenic | 45.0% |
| CATGCCTCAAGAAAAGTTGG+TGG | - | chr6_3:52949610-52949629 | Msa0954020:CDS | 45.0% | |
| ! | ACACCCACCAACTTTTCTTG+AGG | + | chr6_3:52949617-52949636 | None:intergenic | 45.0% |
| !! | GTTGGTGGGTGTTGATTCTA+CGG | - | chr6_3:52949625-52949644 | Msa0954020:CDS | 45.0% |
| AAGGTCGACCAAAAGGATCA+AGG | - | chr6_3:52949699-52949718 | Msa0954020:CDS | 45.0% | |
| TGTCATGTTCCAAATTGCGG+TGG | - | chr6_3:52949761-52949780 | Msa0954020:CDS | 45.0% | |
| TGATCAGTTCCACCGCAATT+TGG | + | chr6_3:52949773-52949792 | None:intergenic | 45.0% | |
| ACCTTTCAAGAGCCGCAACA+TGG | - | chr6_3:52947518-52947537 | Msa0954020:CDS | 50.0% | |
| TCCATGTTGCGGCTCTTGAA+AGG | + | chr6_3:52947522-52947541 | None:intergenic | 50.0% | |
| TGAGGCAAAGGTCCATGTTG+CGG | + | chr6_3:52947533-52947552 | None:intergenic | 50.0% | |
| AATCGTTACGACATGCCGCT+TGG | - | chr6_3:52948310-52948329 | Msa0954020:intron | 50.0% | |
| !! | CGACATGCCGCTTGGTATTT+TGG | - | chr6_3:52948318-52948337 | Msa0954020:intron | 50.0% |
| !!! | GCCGCTTGGTATTTTGGTTG+GGG | - | chr6_3:52948324-52948343 | Msa0954020:intron | 50.0% |
| !! | TCAGACTTGTATTGGCTCCC+AGG | + | chr6_3:52948920-52948939 | None:intergenic | 50.0% |
| GATGCGGCATGTTCCTCAAT+AGG | + | chr6_3:52949143-52949162 | None:intergenic | 50.0% | |
| GAGGAAGATACTTGGAAGGG+AGG | + | chr6_3:52949409-52949428 | None:intergenic | 50.0% | |
| GTGGAACTGATCATGACTCG+AGG | - | chr6_3:52949780-52949799 | Msa0954020:CDS | 50.0% | |
| ACCTTTCAAGAGCCGCAACA+TGG | - | chr6_3:52947518-52947537 | Msa0954020:CDS | 50.0% | |
| TCCATGTTGCGGCTCTTGAA+AGG | + | chr6_3:52947522-52947541 | None:intergenic | 50.0% | |
| TGAGGCAAAGGTCCATGTTG+CGG | + | chr6_3:52947533-52947552 | None:intergenic | 50.0% | |
| AATCGTTACGACATGCCGCT+TGG | - | chr6_3:52948310-52948329 | Msa0954020:intron | 50.0% | |
| !! | CGACATGCCGCTTGGTATTT+TGG | - | chr6_3:52948318-52948337 | Msa0954020:intron | 50.0% |
| !!! | GCCGCTTGGTATTTTGGTTG+GGG | - | chr6_3:52948324-52948343 | Msa0954020:intron | 50.0% |
| !! | TCAGACTTGTATTGGCTCCC+AGG | + | chr6_3:52948920-52948939 | None:intergenic | 50.0% |
| GATGCGGCATGTTCCTCAAT+AGG | + | chr6_3:52949143-52949162 | None:intergenic | 50.0% | |
| GAGGAAGATACTTGGAAGGG+AGG | + | chr6_3:52949409-52949428 | None:intergenic | 50.0% | |
| GTGGAACTGATCATGACTCG+AGG | - | chr6_3:52949780-52949799 | Msa0954020:CDS | 50.0% | |
| !! | AAAGCGGCCTCCGTCACTTT+TGG | + | chr6_3:52949273-52949292 | None:intergenic | 55.0% |
| ! | ACGGAGGCCGCTTTGTAAGT+TGG | - | chr6_3:52949279-52949298 | Msa0954020:CDS | 55.0% |
| !! | AAAGCGGCCTCCGTCACTTT+TGG | + | chr6_3:52949273-52949292 | None:intergenic | 55.0% |
| ! | ACGGAGGCCGCTTTGTAAGT+TGG | - | chr6_3:52949279-52949298 | Msa0954020:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 52947428 | 52949862 | 52947428 | ID=Msa0954020;Name=Msa0954020 |
| chr6_3 | mRNA | 52947428 | 52949862 | 52947428 | ID=Msa0954020-mRNA-1;Parent=Msa0954020;Name=Msa0954020-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.66|1|1|3|0|752 |
| chr6_3 | exon | 52948861 | 52949862 | 52948861 | ID=Msa0954020-mRNA-1:exon:11129;Parent=Msa0954020-mRNA-1 |
| chr6_3 | exon | 52948334 | 52948777 | 52948334 | ID=Msa0954020-mRNA-1:exon:11128;Parent=Msa0954020-mRNA-1 |
| chr6_3 | exon | 52947428 | 52948240 | 52947428 | ID=Msa0954020-mRNA-1:exon:11127;Parent=Msa0954020-mRNA-1 |
| chr6_3 | CDS | 52948861 | 52949862 | 52948861 | ID=Msa0954020-mRNA-1:cds;Parent=Msa0954020-mRNA-1 |
| chr6_3 | CDS | 52948334 | 52948777 | 52948334 | ID=Msa0954020-mRNA-1:cds;Parent=Msa0954020-mRNA-1 |
| chr6_3 | CDS | 52947428 | 52948240 | 52947428 | ID=Msa0954020-mRNA-1:cds;Parent=Msa0954020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
