Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0908840 | KAF1856957.1 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 5.17e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0908840 | -0.800430 | 1.446292e-48 | -8.615850e-47 |
| Msa0026430 | Msa0908840 | -0.803939 | 2.743975e-49 | -8.615850e-47 |
| Msa0034970 | Msa0908840 | -0.801878 | 7.314832e-49 | -8.615850e-47 |
| Msa0043980 | Msa0908840 | -0.826440 | 2.709806e-54 | -8.615850e-47 |
| Msa0044000 | Msa0908840 | -0.812187 | 4.808823e-51 | -8.615850e-47 |
| Msa0065950 | Msa0908840 | -0.807432 | 5.069598e-50 | -8.615850e-47 |
| Msa0069500 | Msa0908840 | 0.827590 | 1.438133e-54 | -8.615850e-47 |
| Msa0089820 | Msa0908840 | -0.806319 | 8.714091e-50 | -8.615850e-47 |
| Msa0090570 | Msa0908840 | -0.808953 | 2.403369e-50 | -8.615850e-47 |
| Msa0104800 | Msa0908840 | -0.806926 | 6.487264e-50 | -8.615850e-47 |
| Msa0609410 | Msa0908840 | 0.810504 | 1.115548e-50 | -8.615850e-47 |
| Msa0626220 | Msa0908840 | -0.800230 | 1.588706e-48 | -8.615850e-47 |
| Msa0657750 | Msa0908840 | -0.805014 | 1.637873e-49 | -8.615850e-47 |
| Msa0673460 | Msa0908840 | -0.822159 | 2.749930e-53 | -8.615850e-47 |
| Msa0682680 | Msa0908840 | -0.804987 | 1.658866e-49 | -8.615850e-47 |
| Msa0687020 | Msa0908840 | -0.802332 | 5.899205e-49 | -8.615850e-47 |
| Msa0697990 | Msa0908840 | 0.848141 | 7.405277e-60 | -8.615850e-47 |
| Msa0709160 | Msa0908840 | -0.805285 | 1.437134e-49 | -8.615850e-47 |
| Msa0717010 | Msa0908840 | -0.802187 | 6.318408e-49 | -8.615850e-47 |
| Msa0721280 | Msa0908840 | -0.811586 | 6.502330e-51 | -8.615850e-47 |
| Msa0763890 | Msa0908840 | -0.805054 | 1.606388e-49 | -8.615850e-47 |
| Msa0771720 | Msa0908840 | -0.805294 | 1.430635e-49 | -8.615850e-47 |
| Msa0790660 | Msa0908840 | 0.813160 | 2.945864e-51 | -8.615850e-47 |
| Msa0794730 | Msa0908840 | -0.800520 | 1.386870e-48 | -8.615850e-47 |
| Msa0817460 | Msa0908840 | -0.808147 | 3.571798e-50 | -8.615850e-47 |
| Msa0820850 | Msa0908840 | -0.808339 | 3.251402e-50 | -8.615850e-47 |
| Msa0127800 | Msa0908840 | -0.820317 | 7.312906e-53 | -8.615850e-47 |
| Msa0138020 | Msa0908840 | -0.800163 | 1.639100e-48 | -8.615850e-47 |
| Msa0151180 | Msa0908840 | -0.801669 | 8.071922e-49 | -8.615850e-47 |
| Msa0175840 | Msa0908840 | -0.801083 | 1.064516e-48 | -8.615850e-47 |
| Msa0206010 | Msa0908840 | -0.807603 | 4.662555e-50 | -8.615850e-47 |
| Msa0212930 | Msa0908840 | -0.804045 | 2.607771e-49 | -8.615850e-47 |
| Msa0220440 | Msa0908840 | -0.818598 | 1.803258e-52 | -8.615850e-47 |
| Msa0229380 | Msa0908840 | -0.808639 | 2.805184e-50 | -8.615850e-47 |
| Msa0376910 | Msa0908840 | -0.808546 | 2.937067e-50 | -8.615850e-47 |
| Msa0412840 | Msa0908840 | -0.811390 | 7.169268e-51 | -8.615850e-47 |
| Msa0471900 | Msa0908840 | -0.810794 | 9.654701e-51 | -8.615850e-47 |
| Msa0477130 | Msa0908840 | 0.809423 | 1.906082e-50 | -8.615850e-47 |
| Msa0253200 | Msa0908840 | -0.822105 | 2.830348e-53 | -8.615850e-47 |
| Msa0261720 | Msa0908840 | -0.824557 | 7.566506e-54 | -8.615850e-47 |
| Msa0271530 | Msa0908840 | -0.807439 | 5.052335e-50 | -8.615850e-47 |
| Msa0287410 | Msa0908840 | -0.827159 | 1.824361e-54 | -8.615850e-47 |
| Msa0292030 | Msa0908840 | -0.820350 | 7.183768e-53 | -8.615850e-47 |
| Msa0319170 | Msa0908840 | -0.831185 | 1.926799e-55 | -8.615850e-47 |
| Msa0326110 | Msa0908840 | -0.822884 | 1.864908e-53 | -8.615850e-47 |
| Msa0337060 | Msa0908840 | -0.808767 | 2.634767e-50 | -8.615850e-47 |
| Msa0484780 | Msa0908840 | -0.801064 | 1.074040e-48 | -8.615850e-47 |
| Msa0518380 | Msa0908840 | -0.810462 | 1.138844e-50 | -8.615850e-47 |
| Msa0556060 | Msa0908840 | -0.804807 | 1.809058e-49 | -8.615850e-47 |
| Msa0849030 | Msa0908840 | -0.812905 | 3.350360e-51 | -8.615850e-47 |
| Msa0860030 | Msa0908840 | 0.808816 | 2.571512e-50 | -8.615850e-47 |
| Msa0861130 | Msa0908840 | -0.803672 | 3.117792e-49 | -8.615850e-47 |
| Msa0872440 | Msa0908840 | -0.801013 | 1.100263e-48 | -8.615850e-47 |
| Msa0908830 | Msa0908840 | 0.881855 | 1.696261e-70 | -8.615850e-47 |
| Msa0908840 | Msa0908850 | 0.881611 | 2.077800e-70 | -8.615850e-47 |
| Msa0908840 | Msa0908870 | 0.862282 | 5.657969e-64 | -8.615850e-47 |
| Msa0908840 | Msa0908920 | 0.868062 | 8.630158e-66 | -8.615850e-47 |
| Msa0908840 | Msa0908930 | 0.866850 | 2.108268e-65 | -8.615850e-47 |
| Msa0908840 | Msa0920060 | 0.830978 | 2.165727e-55 | -8.615850e-47 |
| Msa0908840 | Msa0933100 | -0.820930 | 5.286670e-53 | -8.615850e-47 |
| Msa0908840 | Msa0944900 | 0.891508 | 3.725027e-74 | -8.615850e-47 |
| Msa0908840 | Msa0944920 | 0.895868 | 6.367319e-76 | -8.615850e-47 |
| Msa0908840 | Msa0944930 | 0.989640 | 5.337476e-179 | -8.615850e-47 |
| Msa0908840 | Msa0944940 | 0.883899 | 3.034617e-71 | -8.615850e-47 |
| Msa0908840 | Msa0944990 | 0.880544 | 5.031955e-70 | -8.615850e-47 |
| Msa0908840 | Msa0969520 | -0.802140 | 6.461635e-49 | -8.615850e-47 |
| Msa0908840 | Msa0983170 | 0.883521 | 4.181050e-71 | -8.615850e-47 |
| Msa0908840 | Msa0983180 | 0.998210 | 7.097831e-259 | -8.615850e-47 |
| Msa0908840 | Msa0983190 | 0.891744 | 3.003016e-74 | -8.615850e-47 |
| Msa0908840 | Msa0983210 | 0.868262 | 7.443482e-66 | -8.615850e-47 |
| Msa0908840 | Msa0983220 | 0.833832 | 4.252501e-56 | -8.615850e-47 |
| Msa0908840 | Msa0983260 | 0.876571 | 1.256400e-68 | -8.615850e-47 |
| Msa0908840 | Msa0983300 | 0.854579 | 1.120305e-61 | -8.615850e-47 |
| Msa0908840 | Msa0983320 | 0.884407 | 1.968691e-71 | -8.615850e-47 |
| Msa0908840 | Msa0983350 | 0.851666 | 7.647218e-61 | -8.615850e-47 |
| Msa0908840 | Msa0983460 | 0.876870 | 9.901974e-69 | -8.615850e-47 |
| Msa0908840 | Msa0983490 | 0.845965 | 2.921175e-59 | -8.615850e-47 |
| Msa0908840 | Msa0983500 | 0.882157 | 1.317730e-70 | -8.615850e-47 |
| Msa0908840 | Msa0983520 | 0.889418 | 2.466518e-73 | -8.615850e-47 |
| Msa0908840 | Msa0983530 | 0.989212 | 3.662105e-177 | -8.615850e-47 |
| Msa0908840 | Msa0983540 | 0.891332 | 4.377446e-74 | -8.615850e-47 |
| Msa0908840 | Msa0983550 | 0.803480 | 3.416896e-49 | -8.615850e-47 |
| Msa0908840 | Msa0994370 | -0.815745 | 7.899652e-52 | -8.615850e-47 |
| Msa0908840 | Msa1023920 | -0.802483 | 5.490418e-49 | -8.615850e-47 |
| Msa0908840 | Msa1034150 | -0.813168 | 2.934637e-51 | -8.615850e-47 |
| Msa0908840 | Msa1063510 | -0.801665 | 8.090711e-49 | -8.615850e-47 |
| Msa0908840 | Msa1107900 | -0.803477 | 3.421420e-49 | -8.615850e-47 |
| Msa0908840 | Msa1109680 | -0.804008 | 2.654636e-49 | -8.615850e-47 |
| Msa0908840 | Msa1123470 | -0.804329 | 2.276645e-49 | -8.615850e-47 |
| Msa0908840 | Msa1129550 | -0.801242 | 9.877551e-49 | -8.615850e-47 |
| Msa0908840 | Msa1135470 | -0.802213 | 6.242709e-49 | -8.615850e-47 |
| Msa0908840 | Msa1174040 | -0.813600 | 2.358458e-51 | -8.615850e-47 |
| Msa0908840 | Msa1193290 | -0.809876 | 1.523174e-50 | -8.615850e-47 |
| Msa0908840 | Msa1210020 | -0.813266 | 2.792504e-51 | -8.615850e-47 |
| Msa0908840 | Msa1228620 | 0.866986 | 1.907792e-65 | -8.615850e-47 |
| Msa0908840 | Msa1270660 | -0.803078 | 4.139365e-49 | -8.615850e-47 |
| Msa0908840 | Msa1270730 | -0.816656 | 4.941422e-52 | -8.615850e-47 |
| Msa0908840 | Msa1276440 | -0.809903 | 1.502946e-50 | -8.615850e-47 |
| Msa0908840 | Msa1294820 | -0.803896 | 2.800369e-49 | -8.615850e-47 |
| Msa0908840 | Msa1298510 | -0.818059 | 2.387813e-52 | -8.615850e-47 |
| Msa0908840 | Msa1305710 | -0.812314 | 4.512736e-51 | -8.615850e-47 |
| Msa0908840 | Msa1357890 | -0.815043 | 1.131724e-51 | -8.615850e-47 |
| Msa0908840 | Msa1370070 | 0.808727 | 2.687235e-50 | -8.615850e-47 |
| Msa0908840 | Msa1391970 | 0.852960 | 3.276527e-61 | -8.615850e-47 |
| Msa0908840 | Msa1392010 | 0.885307 | 9.101686e-72 | -8.615850e-47 |
| Msa0908840 | Msa1392030 | 0.850373 | 1.771340e-60 | -8.615850e-47 |
| Msa0908840 | Msa1392120 | 0.871444 | 6.804404e-67 | -8.615850e-47 |
| Msa0908840 | Msa1392160 | 0.877761 | 4.848826e-69 | -8.615850e-47 |
| Msa0908840 | Msa1397120 | -0.801221 | 9.972959e-49 | -8.615850e-47 |
| Msa0908840 | Msa1398090 | -0.809260 | 2.066305e-50 | -8.615850e-47 |
| Msa0908840 | Msa1407600 | -0.827084 | 1.901578e-54 | -8.615850e-47 |
| Msa0908840 | Msa1417200 | -0.804213 | 2.406698e-49 | -8.615850e-47 |
| Msa0908840 | Msa1434420 | 0.811326 | 7.403191e-51 | -8.615850e-47 |
| Msa0908840 | Msa1466540 | -0.823476 | 1.356690e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAAGAAAGTAGGTTTC+GGG | 0.299621 | 6_2:+9933127 | Msa0908840:intron |
| TGCGCGAGTCACCTTCTTCT+AGG | 0.325482 | 6_2:+9933304 | Msa0908840:CDS |
| ACCAGCCAGCTGGGTTGGTT+TGG | 0.332153 | 6_2:+9933245 | Msa0908840:CDS |
| CGCAATGGCTTTCTCTGATA+GGG | 0.371132 | 6_2:+9932839 | None:intergenic |
| ATTCCTTTCTATTGAAAAGA+AGG | 0.387353 | 6_2:+9933270 | Msa0908840:CDS |
| GCGCAATGGCTTTCTCTGAT+AGG | 0.391358 | 6_2:+9932838 | None:intergenic |
| GTCGTCCGTCTCAGGTTTGC+CGG | 0.398406 | 6_2:+9933201 | Msa0908840:CDS |
| GGACCGTGGTCGTCCGTCTC+AGG | 0.441663 | 6_2:+9933193 | Msa0908840:CDS |
| AGCAGCACCTTGTATAGGTT+GGG | 0.447543 | 6_2:-9932882 | None:intergenic |
| GTACACCTCCGGTGCTGATA+AGG | 0.450222 | 6_2:+9933167 | Msa0908840:CDS |
| GATTGACCAGCCAGCTGGGT+TGG | 0.459599 | 6_2:+9933240 | Msa0908840:CDS |
| GTCAATCTCAGAGATCTTAT+CGG | 0.462954 | 6_2:-9933224 | None:intergenic |
| AAGCGAGCAGCACCTTGTAT+AGG | 0.473472 | 6_2:-9932887 | None:intergenic |
| TCTGAGATTGACCAGCCAGC+TGG | 0.486873 | 6_2:+9933235 | Msa0908840:CDS |
| TTCATTGATTAGTACACCTC+CGG | 0.492064 | 6_2:+9933156 | Msa0908840:CDS |
| CGCTTTCTCTCAGCCACCAG+TGG | 0.505851 | 6_2:+9932905 | Msa0908840:CDS |
| CTGAGATTGACCAGCCAGCT+GGG | 0.514570 | 6_2:+9933236 | Msa0908840:CDS |
| CACCTTCTTCTAGGCTCCGC+TGG | 0.516734 | 6_2:+9933313 | Msa0908840:CDS |
| GCCAAACCAACCCAGCTGGC+TGG | 0.523772 | 6_2:-9933246 | None:intergenic |
| GAGCAGCACCTTGTATAGGT+TGG | 0.534433 | 6_2:-9932883 | None:intergenic |
| ATCTCAGAGATCTTATCGGC+CGG | 0.550066 | 6_2:-9933220 | None:intergenic |
| AATAGCCAAACCAACCCAGC+TGG | 0.553661 | 6_2:-9933250 | None:intergenic |
| CCTCCGGTGCTGATAAGGTC+GGG | 0.561319 | 6_2:+9933172 | Msa0908840:CDS |
| ATCGGCCGGCAAACCTGAGA+CGG | 0.579939 | 6_2:-9933206 | None:intergenic |
| GCCACCAGTGGCTTATGTAG+TGG | 0.581920 | 6_2:+9932917 | Msa0908840:CDS |
| TGCTGATAAGGTCGGGACCG+TGG | 0.590314 | 6_2:+9933179 | Msa0908840:CDS |
| GTCCAGCGGAGCCTAGAAGA+AGG | 0.604022 | 6_2:-9933315 | None:intergenic |
| CTAGGCTCCGCTGGACGACA+CGG | 0.612977 | 6_2:+9933322 | Msa0908840:CDS |
| GAGAATGCCGTGTCGTCCAG+CGG | 0.617479 | 6_2:-9933329 | None:intergenic |
| CCCGACCTTATCAGCACCGG+AGG | 0.624401 | 6_2:-9933172 | None:intergenic |
| AGCACCTTGTATAGGTTGGG+CGG | 0.628644 | 6_2:-9932879 | None:intergenic |
| AGCTCCGCCCAACCTATACA+AGG | 0.631063 | 6_2:+9932875 | Msa0908840:CDS |
| CCGACCACTACATAAGCCAC+TGG | 0.631161 | 6_2:-9932921 | None:intergenic |
| ACCTCCGGTGCTGATAAGGT+CGG | 0.637828 | 6_2:+9933171 | Msa0908840:CDS |
| GCAATGGCTTTCTCTGATAG+GGG | 0.641776 | 6_2:+9932840 | None:intergenic |
| GGTCCCGACCTTATCAGCAC+CGG | 0.654281 | 6_2:-9933175 | None:intergenic |
| AAACCTGAGACGGACGACCA+CGG | 0.659367 | 6_2:-9933196 | None:intergenic |
| ACCACTACATAAGCCACTGG+TGG | 0.667213 | 6_2:-9932918 | None:intergenic |
| AGAAAAGAAAGTAGGTTTCG+GGG | 0.671452 | 6_2:+9933128 | Msa0908840:intron |
| GAAAAGAAAGTAGGTTTCGG+GGG | 0.676234 | 6_2:+9933129 | Msa0908840:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTTGTCAGAAAAGAAAGT+AGG | + | chr6_2:9933120-9933139 | Msa0908840:intron | 25.0% |
| ! | ATTCCTTTCTATTGAAAAGA+AGG | + | chr6_2:9933270-9933289 | Msa0908840:CDS | 25.0% |
| TCAGAAAAGAAAGTAGGTTT+CGG | + | chr6_2:9933126-9933145 | Msa0908840:intron | 30.0% | |
| ! | ACTCCTTCTTTTCAATAGAA+AGG | - | chr6_2:9933276-9933295 | None:intergenic | 30.0% |
| ACCTTTGGATTCTTAAGTAG+GGG | - | chr6_2:9932970-9932989 | None:intergenic | 35.0% | |
| GACCTTTGGATTCTTAAGTA+GGG | - | chr6_2:9932971-9932990 | None:intergenic | 35.0% | |
| TGACCTTTGGATTCTTAAGT+AGG | - | chr6_2:9932972-9932991 | None:intergenic | 35.0% | |
| GTTGTTGTGATTGAGTTTGA+GGG | - | chr6_2:9933074-9933093 | None:intergenic | 35.0% | |
| TGTTGTTGTGATTGAGTTTG+AGG | - | chr6_2:9933075-9933094 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGTAGGTTTC+GGG | + | chr6_2:9933127-9933146 | Msa0908840:intron | 35.0% | |
| AGAAAAGAAAGTAGGTTTCG+GGG | + | chr6_2:9933128-9933147 | Msa0908840:intron | 35.0% | |
| ! | TTCATTGATTAGTACACCTC+CGG | + | chr6_2:9933156-9933175 | Msa0908840:CDS | 35.0% |
| GTCAATCTCAGAGATCTTAT+CGG | - | chr6_2:9933227-9933246 | None:intergenic | 35.0% | |
| CCTTTGGATTCTTAAGTAGG+GGG | - | chr6_2:9932969-9932988 | None:intergenic | 40.0% | |
| AAGAATCCAAAGGTCACCTT+TGG | + | chr6_2:9932976-9932995 | Msa0908840:intron | 40.0% | |
| GAAAAGAAAGTAGGTTTCGG+GGG | + | chr6_2:9933129-9933148 | Msa0908840:intron | 40.0% | |
| AGCAGCACCTTGTATAGGTT+GGG | - | chr6_2:9932885-9932904 | None:intergenic | 45.0% | |
| TTCTTAAGTAGGGGGCAAAG+AGG | - | chr6_2:9932961-9932980 | None:intergenic | 45.0% | |
| CCCCCTACTTAAGAATCCAA+AGG | + | chr6_2:9932966-9932985 | Msa0908840:intron | 45.0% | |
| GCTTTGGTTACGAAAGTAGC+CGG | + | chr6_2:9933012-9933031 | Msa0908840:intron | 45.0% | |
| CTTTGGTTACGAAAGTAGCC+GGG | + | chr6_2:9933013-9933032 | Msa0908840:intron | 45.0% | |
| TTTGGTTACGAAAGTAGCCG+GGG | + | chr6_2:9933014-9933033 | Msa0908840:intron | 45.0% | |
| TCACAACAACATGTCGTGAC+CGG | + | chr6_2:9933084-9933103 | Msa0908840:intron | 45.0% | |
| CAAAATCCACCAAGCCTAAC+CGG | - | chr6_2:9933106-9933125 | None:intergenic | 45.0% | |
| ATCTCAGAGATCTTATCGGC+CGG | - | chr6_2:9933223-9933242 | None:intergenic | 45.0% | |
| ! | AGCACCTTGTATAGGTTGGG+CGG | - | chr6_2:9932882-9932901 | None:intergenic | 50.0% |
| GAGCAGCACCTTGTATAGGT+TGG | - | chr6_2:9932886-9932905 | None:intergenic | 50.0% | |
| AAGCGAGCAGCACCTTGTAT+AGG | - | chr6_2:9932890-9932909 | None:intergenic | 50.0% | |
| ACCACTACATAAGCCACTGG+TGG | - | chr6_2:9932921-9932940 | None:intergenic | 50.0% | |
| CCAGTGGCTTATGTAGTGGT+CGG | + | chr6_2:9932921-9932940 | Msa0908840:intron | 50.0% | |
| CAACAGCCAAAGGTGACCTT+TGG | - | chr6_2:9932985-9933004 | None:intergenic | 50.0% | |
| AGCGTCAAGACAACAGCCAA+AGG | - | chr6_2:9932995-9933014 | None:intergenic | 50.0% | |
| TGGCTGTTGTCTTGACGCTT+TGG | + | chr6_2:9932996-9933015 | Msa0908840:intron | 50.0% | |
| CCATCCATAAACCTAGACCC+CGG | - | chr6_2:9933034-9933053 | None:intergenic | 50.0% | |
| ACAACATGTCGTGACCGGTT+AGG | + | chr6_2:9933089-9933108 | Msa0908840:intron | 50.0% | |
| AAGAAAGTAGGTTTCGGGGG+TGG | + | chr6_2:9933132-9933151 | Msa0908840:intron | 50.0% | |
| AGAAAGTAGGTTTCGGGGGT+GGG | + | chr6_2:9933133-9933152 | Msa0908840:intron | 50.0% | |
| AATAGCCAAACCAACCCAGC+TGG | - | chr6_2:9933253-9933272 | None:intergenic | 50.0% | |
| AGCTCCGCCCAACCTATACA+AGG | + | chr6_2:9932875-9932894 | Msa0908840:CDS | 55.0% | |
| GCCACCAGTGGCTTATGTAG+TGG | + | chr6_2:9932917-9932936 | Msa0908840:CDS | 55.0% | |
| CCGACCACTACATAAGCCAC+TGG | - | chr6_2:9932924-9932943 | None:intergenic | 55.0% | |
| TACGAAAGTAGCCGGGGTCT+AGG | + | chr6_2:9933020-9933039 | Msa0908840:intron | 55.0% | |
| GTAGCCGGGGTCTAGGTTTA+TGG | + | chr6_2:9933027-9933046 | Msa0908840:intron | 55.0% | |
| CCGGGGTCTAGGTTTATGGA+TGG | + | chr6_2:9933031-9933050 | Msa0908840:intron | 55.0% | |
| ATGTCGTGACCGGTTAGGCT+TGG | + | chr6_2:9933094-9933113 | Msa0908840:intron | 55.0% | |
| !! | GTACACCTCCGGTGCTGATA+AGG | + | chr6_2:9933167-9933186 | Msa0908840:CDS | 55.0% |
| !! | ACCTCCGGTGCTGATAAGGT+CGG | + | chr6_2:9933171-9933190 | Msa0908840:CDS | 55.0% |
| AAACCTGAGACGGACGACCA+CGG | - | chr6_2:9933199-9933218 | None:intergenic | 55.0% | |
| ! | TCTGAGATTGACCAGCCAGC+TGG | + | chr6_2:9933235-9933254 | Msa0908840:CDS | 55.0% |
| CTGAGATTGACCAGCCAGCT+GGG | + | chr6_2:9933236-9933255 | Msa0908840:CDS | 55.0% | |
| TGCGCGAGTCACCTTCTTCT+AGG | + | chr6_2:9933304-9933323 | Msa0908840:CDS | 55.0% | |
| CGCTTTCTCTCAGCCACCAG+TGG | + | chr6_2:9932905-9932924 | Msa0908840:CDS | 60.0% | |
| TCGTGACCGGTTAGGCTTGG+TGG | + | chr6_2:9933097-9933116 | Msa0908840:intron | 60.0% | |
| !! | CCTCCGGTGCTGATAAGGTC+GGG | + | chr6_2:9933172-9933191 | Msa0908840:CDS | 60.0% |
| GGTCCCGACCTTATCAGCAC+CGG | - | chr6_2:9933178-9933197 | None:intergenic | 60.0% | |
| TGCTGATAAGGTCGGGACCG+TGG | + | chr6_2:9933179-9933198 | Msa0908840:CDS | 60.0% | |
| GTCGTCCGTCTCAGGTTTGC+CGG | + | chr6_2:9933201-9933220 | Msa0908840:CDS | 60.0% | |
| ATCGGCCGGCAAACCTGAGA+CGG | - | chr6_2:9933209-9933228 | None:intergenic | 60.0% | |
| GATTGACCAGCCAGCTGGGT+TGG | + | chr6_2:9933240-9933259 | Msa0908840:CDS | 60.0% | |
| !! | ACCAGCCAGCTGGGTTGGTT+TGG | + | chr6_2:9933245-9933264 | Msa0908840:CDS | 60.0% |
| CACCTTCTTCTAGGCTCCGC+TGG | + | chr6_2:9933313-9933332 | Msa0908840:CDS | 60.0% | |
| GTCCAGCGGAGCCTAGAAGA+AGG | - | chr6_2:9933318-9933337 | None:intergenic | 60.0% | |
| GAGAATGCCGTGTCGTCCAG+CGG | - | chr6_2:9933332-9933351 | None:intergenic | 60.0% | |
| ! | GGGGGCAAAGAGGAGCACGT+AGG | - | chr6_2:9932951-9932970 | None:intergenic | 65.0% |
| ! | CCCGACCTTATCAGCACCGG+AGG | - | chr6_2:9933175-9933194 | None:intergenic | 65.0% |
| GCCAAACCAACCCAGCTGGC+TGG | - | chr6_2:9933249-9933268 | None:intergenic | 65.0% | |
| CTAGGCTCCGCTGGACGACA+CGG | + | chr6_2:9933322-9933341 | Msa0908840:CDS | 65.0% | |
| GGACCGTGGTCGTCCGTCTC+AGG | + | chr6_2:9933193-9933212 | Msa0908840:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 9932843 | 9933357 | 9932843 | ID=Msa0908840;Name=Msa0908840 |
| chr6_2 | mRNA | 9932843 | 9933357 | 9932843 | ID=Msa0908840-mRNA-1;Parent=Msa0908840;Name=Msa0908840-mRNA-1;_AED=0.27;_eAED=0.39;_QI=0|0|0|1|0|0|2|0|103 |
| chr6_2 | exon | 9932843 | 9932938 | 9932843 | ID=Msa0908840-mRNA-1:exon:2502;Parent=Msa0908840-mRNA-1 |
| chr6_2 | exon | 9933142 | 9933357 | 9933142 | ID=Msa0908840-mRNA-1:exon:2503;Parent=Msa0908840-mRNA-1 |
| chr6_2 | CDS | 9932843 | 9932938 | 9932843 | ID=Msa0908840-mRNA-1:cds;Parent=Msa0908840-mRNA-1 |
| chr6_2 | CDS | 9933142 | 9933357 | 9933142 | ID=Msa0908840-mRNA-1:cds;Parent=Msa0908840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
