Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983180 | KAF1856957.1 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 5.17e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983180 | A0A6A5L5V7 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 2.47e-64 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011660 | Msa0983180 | 0.800823 | 1.202606e-48 | -8.615850e-47 |
| Msa0020410 | Msa0983180 | -0.804461 | 2.136938e-49 | -8.615850e-47 |
| Msa0026430 | Msa0983180 | -0.806355 | 8.565574e-50 | -8.615850e-47 |
| Msa0034970 | Msa0983180 | -0.802708 | 4.935255e-49 | -8.615850e-47 |
| Msa0037880 | Msa0983180 | -0.805365 | 1.382714e-49 | -8.615850e-47 |
| Msa0043980 | Msa0983180 | -0.828858 | 7.117704e-55 | -8.615850e-47 |
| Msa0044000 | Msa0983180 | -0.815300 | 9.922817e-52 | -8.615850e-47 |
| Msa0065950 | Msa0983180 | -0.811039 | 8.546220e-51 | -8.615850e-47 |
| Msa0069500 | Msa0983180 | 0.829249 | 5.722628e-55 | -8.615850e-47 |
| Msa0089360 | Msa0983180 | -0.804702 | 1.902592e-49 | -8.615850e-47 |
| Msa0089820 | Msa0983180 | -0.807163 | 5.779572e-50 | -8.615850e-47 |
| Msa0090570 | Msa0983180 | -0.811710 | 6.109862e-51 | -8.615850e-47 |
| Msa0104800 | Msa0983180 | -0.808791 | 2.603635e-50 | -8.615850e-47 |
| Msa0609410 | Msa0983180 | 0.811405 | 7.116654e-51 | -8.615850e-47 |
| Msa0626220 | Msa0983180 | -0.800124 | 1.669790e-48 | -8.615850e-47 |
| Msa0657750 | Msa0983180 | -0.804458 | 2.139523e-49 | -8.615850e-47 |
| Msa0673460 | Msa0983180 | -0.823947 | 1.052470e-53 | -8.615850e-47 |
| Msa0682680 | Msa0983180 | -0.808942 | 2.417251e-50 | -8.615850e-47 |
| Msa0687020 | Msa0983180 | -0.801781 | 7.656172e-49 | -8.615850e-47 |
| Msa0697990 | Msa0983180 | 0.846870 | 1.654645e-59 | -8.615850e-47 |
| Msa0709160 | Msa0983180 | -0.807874 | 4.083596e-50 | -8.615850e-47 |
| Msa0716960 | Msa0983180 | -0.800064 | 1.716962e-48 | -8.615850e-47 |
| Msa0717010 | Msa0983180 | -0.803114 | 4.068438e-49 | -8.615850e-47 |
| Msa0721280 | Msa0983180 | -0.812435 | 4.246351e-51 | -8.615850e-47 |
| Msa0763890 | Msa0983180 | -0.806507 | 7.954164e-50 | -8.615850e-47 |
| Msa0771720 | Msa0983180 | -0.807152 | 5.811345e-50 | -8.615850e-47 |
| Msa0790660 | Msa0983180 | 0.816485 | 5.398641e-52 | -8.615850e-47 |
| Msa0794730 | Msa0983180 | -0.802333 | 5.895766e-49 | -8.615850e-47 |
| Msa0817460 | Msa0983180 | -0.808185 | 3.506550e-50 | -8.615850e-47 |
| Msa0820850 | Msa0983180 | -0.810639 | 1.042778e-50 | -8.615850e-47 |
| Msa0127800 | Msa0983180 | -0.823119 | 1.644197e-53 | -8.615850e-47 |
| Msa0138020 | Msa0983180 | -0.802593 | 5.212816e-49 | -8.615850e-47 |
| Msa0151180 | Msa0983180 | -0.804120 | 2.516209e-49 | -8.615850e-47 |
| Msa0173070 | Msa0983180 | -0.801505 | 8.725585e-49 | -8.615850e-47 |
| Msa0175840 | Msa0983180 | -0.802073 | 6.671099e-49 | -8.615850e-47 |
| Msa0206010 | Msa0983180 | -0.809849 | 1.544352e-50 | -8.615850e-47 |
| Msa0212930 | Msa0983180 | -0.805466 | 1.317227e-49 | -8.615850e-47 |
| Msa0220440 | Msa0983180 | -0.819824 | 9.480832e-53 | -8.615850e-47 |
| Msa0229380 | Msa0983180 | -0.807989 | 3.861225e-50 | -8.615850e-47 |
| Msa0376910 | Msa0983180 | -0.809819 | 1.567450e-50 | -8.615850e-47 |
| Msa0412840 | Msa0983180 | -0.813618 | 2.336472e-51 | -8.615850e-47 |
| Msa0453350 | Msa0983180 | -0.802079 | 6.651088e-49 | -8.615850e-47 |
| Msa0471900 | Msa0983180 | -0.812791 | 3.549083e-51 | -8.615850e-47 |
| Msa0477130 | Msa0983180 | 0.810012 | 1.423978e-50 | -8.615850e-47 |
| Msa0983170 | Msa0983180 | 0.884384 | 2.007754e-71 | -8.615850e-47 |
| Msa0983180 | Msa0983190 | 0.890799 | 7.102633e-74 | -8.615850e-47 |
| Msa0983180 | Msa0983210 | 0.868749 | 5.180990e-66 | -8.615850e-47 |
| Msa0983180 | Msa0983220 | 0.834466 | 2.948592e-56 | -8.615850e-47 |
| Msa0983180 | Msa0983260 | 0.879961 | 8.126594e-70 | -8.615850e-47 |
| Msa0983180 | Msa0983300 | 0.853115 | 2.957673e-61 | -8.615850e-47 |
| Msa0983180 | Msa0983320 | 0.884507 | 1.808198e-71 | -8.615850e-47 |
| Msa0983180 | Msa0983350 | 0.852174 | 5.486830e-61 | -8.615850e-47 |
| Msa0983180 | Msa0983460 | 0.874668 | 5.641103e-68 | -8.615850e-47 |
| Msa0983180 | Msa0983490 | 0.847194 | 1.349156e-59 | -8.615850e-47 |
| Msa0983180 | Msa0983500 | 0.882905 | 7.037771e-71 | -8.615850e-47 |
| Msa0983180 | Msa0983520 | 0.888578 | 5.215803e-73 | -8.615850e-47 |
| Msa0983180 | Msa0983530 | 0.989906 | 3.520689e-180 | -8.615850e-47 |
| Msa0983180 | Msa0983540 | 0.891601 | 3.422602e-74 | -8.615850e-47 |
| Msa0983180 | Msa0983550 | 0.804138 | 2.493968e-49 | -8.615850e-47 |
| Msa0983180 | Msa0994370 | -0.818401 | 1.998354e-52 | -8.615850e-47 |
| Msa0983180 | Msa1023920 | -0.803909 | 2.783610e-49 | -8.615850e-47 |
| Msa0983180 | Msa1034150 | -0.816783 | 4.627954e-52 | -8.615850e-47 |
| Msa0983180 | Msa1063510 | -0.803427 | 3.505116e-49 | -8.615850e-47 |
| Msa0983180 | Msa1107900 | -0.804686 | 1.917625e-49 | -8.615850e-47 |
| Msa0983180 | Msa1109680 | -0.805222 | 1.481433e-49 | -8.615850e-47 |
| Msa0983180 | Msa1123470 | -0.802632 | 5.116897e-49 | -8.615850e-47 |
| Msa0983180 | Msa1129550 | -0.802229 | 6.195275e-49 | -8.615850e-47 |
| Msa0983180 | Msa1135470 | -0.804346 | 2.257754e-49 | -8.615850e-47 |
| Msa0983180 | Msa1174040 | -0.818257 | 2.154504e-52 | -8.615850e-47 |
| Msa0983180 | Msa1193290 | -0.811198 | 7.894851e-51 | -8.615850e-47 |
| Msa0983180 | Msa1210020 | -0.813050 | 3.114635e-51 | -8.615850e-47 |
| Msa0983180 | Msa1228620 | 0.865419 | 5.988771e-65 | -8.615850e-47 |
| Msa0983180 | Msa1253020 | -0.802563 | 5.287305e-49 | -8.615850e-47 |
| Msa0983180 | Msa1270660 | -0.807409 | 5.127841e-50 | -8.615850e-47 |
| Msa0983180 | Msa1270730 | -0.820122 | 8.103354e-53 | -8.615850e-47 |
| Msa0983180 | Msa1276440 | -0.814964 | 1.178409e-51 | -8.615850e-47 |
| Msa0983180 | Msa1294820 | -0.805263 | 1.452799e-49 | -8.615850e-47 |
| Msa0983180 | Msa1298510 | -0.817507 | 3.182054e-52 | -8.615850e-47 |
| Msa0983180 | Msa1305710 | -0.812651 | 3.808519e-51 | -8.615850e-47 |
| Msa0983180 | Msa1331320 | -0.801015 | 1.099178e-48 | -8.615850e-47 |
| Msa0983180 | Msa1357890 | -0.815558 | 8.691499e-52 | -8.615850e-47 |
| Msa0983180 | Msa1370070 | 0.810437 | 1.153408e-50 | -8.615850e-47 |
| Msa0983180 | Msa1391970 | 0.854133 | 1.507547e-61 | -8.615850e-47 |
| Msa0983180 | Msa1392010 | 0.884749 | 1.470020e-71 | -8.615850e-47 |
| Msa0983180 | Msa1392030 | 0.848908 | 4.539846e-60 | -8.615850e-47 |
| Msa0983180 | Msa1392120 | 0.868705 | 5.354963e-66 | -8.615850e-47 |
| Msa0983180 | Msa1392160 | 0.878187 | 3.440629e-69 | -8.615850e-47 |
| Msa0983180 | Msa1397120 | -0.802838 | 4.639959e-49 | -8.615850e-47 |
| Msa0983180 | Msa1398090 | -0.810155 | 1.326690e-50 | -8.615850e-47 |
| Msa0983180 | Msa1403890 | -0.800629 | 1.317672e-48 | -8.615850e-47 |
| Msa0983180 | Msa1407600 | -0.830404 | 2.993271e-55 | -8.615850e-47 |
| Msa0983180 | Msa1417200 | -0.804431 | 2.167951e-49 | -8.615850e-47 |
| Msa0983180 | Msa1434420 | 0.813021 | 3.160018e-51 | -8.615850e-47 |
| Msa0983180 | Msa1462290 | -0.800746 | 1.246966e-48 | -8.615850e-47 |
| Msa0983180 | Msa1466540 | -0.826176 | 3.131689e-54 | -8.615850e-47 |
| Msa0253200 | Msa0983180 | -0.823926 | 1.064936e-53 | -8.615850e-47 |
| Msa0261720 | Msa0983180 | -0.825863 | 3.717328e-54 | -8.615850e-47 |
| Msa0271530 | Msa0983180 | -0.805966 | 1.034309e-49 | -8.615850e-47 |
| Msa0287410 | Msa0983180 | -0.828894 | 6.973255e-55 | -8.615850e-47 |
| Msa0292030 | Msa0983180 | -0.822062 | 2.896559e-53 | -8.615850e-47 |
| Msa0306210 | Msa0983180 | 0.800180 | 1.626773e-48 | -8.615850e-47 |
| Msa0319170 | Msa0983180 | -0.833207 | 6.088276e-56 | -8.615850e-47 |
| Msa0326110 | Msa0983180 | -0.825107 | 5.613637e-54 | -8.615850e-47 |
| Msa0337060 | Msa0983180 | -0.808628 | 2.821122e-50 | -8.615850e-47 |
| Msa0484780 | Msa0983180 | -0.802285 | 6.031775e-49 | -8.615850e-47 |
| Msa0485490 | Msa0983180 | -0.800535 | 1.377234e-48 | -8.615850e-47 |
| Msa0518380 | Msa0983180 | -0.812389 | 4.345629e-51 | -8.615850e-47 |
| Msa0556060 | Msa0983180 | -0.803823 | 2.900020e-49 | -8.615850e-47 |
| Msa0842650 | Msa0983180 | -0.802918 | 4.465708e-49 | -8.615850e-47 |
| Msa0849030 | Msa0983180 | -0.817107 | 3.914891e-52 | -8.615850e-47 |
| Msa0860030 | Msa0983180 | 0.811468 | 6.896025e-51 | -8.615850e-47 |
| Msa0861130 | Msa0983180 | -0.806620 | 7.531014e-50 | -8.615850e-47 |
| Msa0872440 | Msa0983180 | -0.802748 | 4.842896e-49 | -8.615850e-47 |
| Msa0908830 | Msa0983180 | 0.880162 | 6.886099e-70 | -8.615850e-47 |
| Msa0908840 | Msa0983180 | 0.998210 | 7.097831e-259 | -8.615850e-47 |
| Msa0908850 | Msa0983180 | 0.879836 | 9.001663e-70 | -8.615850e-47 |
| Msa0908870 | Msa0983180 | 0.858966 | 5.728255e-63 | -8.615850e-47 |
| Msa0908920 | Msa0983180 | 0.866776 | 2.225712e-65 | -8.615850e-47 |
| Msa0908930 | Msa0983180 | 0.868598 | 5.795461e-66 | -8.615850e-47 |
| Msa0920060 | Msa0983180 | 0.828630 | 8.081161e-55 | -8.615850e-47 |
| Msa0933100 | Msa0983180 | -0.823377 | 1.431364e-53 | -8.615850e-47 |
| Msa0944900 | Msa0983180 | 0.891250 | 4.716491e-74 | -8.615850e-47 |
| Msa0944920 | Msa0983180 | 0.895133 | 1.279656e-75 | -8.615850e-47 |
| Msa0944930 | Msa0983180 | 0.991043 | 1.334191e-185 | -8.615850e-47 |
| Msa0944940 | Msa0983180 | 0.883365 | 4.771791e-71 | -8.615850e-47 |
| Msa0944990 | Msa0983180 | 0.884156 | 2.438379e-71 | -8.615850e-47 |
| Msa0969520 | Msa0983180 | -0.804404 | 2.195610e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAAGAAAGTAGGTTTC+GGG | 0.299621 | 6_4:+26312157 | Msa0983180:intron |
| TGCGCGAGTCACCTTCTTCT+AGG | 0.325482 | 6_4:+26312334 | Msa0983180:CDS |
| ACCAGCCAGCTGGGTTGGTT+TGG | 0.332153 | 6_4:+26312275 | Msa0983180:CDS |
| CGCAATGGCTTTCTCTGATA+GGG | 0.371132 | 6_4:+26311869 | None:intergenic |
| ATTCCTTTCTATTGAAAAGA+AGG | 0.387353 | 6_4:+26312300 | Msa0983180:CDS |
| GCGCAATGGCTTTCTCTGAT+AGG | 0.391358 | 6_4:+26311868 | None:intergenic |
| GTCGTCCGTCTCAGGTTTGC+CGG | 0.398406 | 6_4:+26312231 | Msa0983180:CDS |
| GGACCGTGGTCGTCCGTCTC+AGG | 0.441663 | 6_4:+26312223 | Msa0983180:CDS |
| AGCAGCACCTTGTATAGGTT+GGG | 0.447543 | 6_4:-26311912 | None:intergenic |
| GTACACCTCCGGTGCTGATA+AGG | 0.450222 | 6_4:+26312197 | Msa0983180:CDS |
| GATTGACCAGCCAGCTGGGT+TGG | 0.459599 | 6_4:+26312270 | Msa0983180:CDS |
| GTCAATCTCAGAGATCTTAT+CGG | 0.462954 | 6_4:-26312254 | None:intergenic |
| AAGCGAGCAGCACCTTGTAT+AGG | 0.473472 | 6_4:-26311917 | None:intergenic |
| TCTGAGATTGACCAGCCAGC+TGG | 0.486873 | 6_4:+26312265 | Msa0983180:CDS |
| TTCATTGATTAGTACACCTC+CGG | 0.492064 | 6_4:+26312186 | Msa0983180:CDS |
| CGCTTTCTCTCAGCCACCAG+TGG | 0.505851 | 6_4:+26311935 | Msa0983180:CDS |
| CTGAGATTGACCAGCCAGCT+GGG | 0.514570 | 6_4:+26312266 | Msa0983180:CDS |
| CACCTTCTTCTAGGCTCCGC+TGG | 0.516734 | 6_4:+26312343 | Msa0983180:CDS |
| GCCAAACCAACCCAGCTGGC+TGG | 0.523772 | 6_4:-26312276 | None:intergenic |
| GAGCAGCACCTTGTATAGGT+TGG | 0.534433 | 6_4:-26311913 | None:intergenic |
| ATCTCAGAGATCTTATCGGC+CGG | 0.550066 | 6_4:-26312250 | None:intergenic |
| AATAGCCAAACCAACCCAGC+TGG | 0.553661 | 6_4:-26312280 | None:intergenic |
| CCTCCGGTGCTGATAAGGTC+GGG | 0.561319 | 6_4:+26312202 | Msa0983180:CDS |
| ATCGGCCGGCAAACCTGAGA+CGG | 0.579939 | 6_4:-26312236 | None:intergenic |
| GCCACCAGTGGCTTATGTAG+TGG | 0.581920 | 6_4:+26311947 | Msa0983180:CDS |
| TGCTGATAAGGTCGGGACCG+TGG | 0.590314 | 6_4:+26312209 | Msa0983180:CDS |
| GTCCAGCGGAGCCTAGAAGA+AGG | 0.604022 | 6_4:-26312345 | None:intergenic |
| CTAGGCTCCGCTGGACGACA+CGG | 0.612977 | 6_4:+26312352 | Msa0983180:CDS |
| GAGAATGCCGTGTCGTCCAG+CGG | 0.617479 | 6_4:-26312359 | None:intergenic |
| CCCGACCTTATCAGCACCGG+AGG | 0.624401 | 6_4:-26312202 | None:intergenic |
| AGCACCTTGTATAGGTTGGG+CGG | 0.628644 | 6_4:-26311909 | None:intergenic |
| AGCTCCGCCCAACCTATACA+AGG | 0.631063 | 6_4:+26311905 | Msa0983180:CDS |
| CCGACCACTACATAAGCCAC+TGG | 0.631161 | 6_4:-26311951 | None:intergenic |
| ACCTCCGGTGCTGATAAGGT+CGG | 0.637828 | 6_4:+26312201 | Msa0983180:CDS |
| GCAATGGCTTTCTCTGATAG+GGG | 0.641776 | 6_4:+26311870 | None:intergenic |
| GGTCCCGACCTTATCAGCAC+CGG | 0.654281 | 6_4:-26312205 | None:intergenic |
| AAACCTGAGACGGACGACCA+CGG | 0.659367 | 6_4:-26312226 | None:intergenic |
| ACCACTACATAAGCCACTGG+TGG | 0.667213 | 6_4:-26311948 | None:intergenic |
| AGAAAAGAAAGTAGGTTTCG+GGG | 0.671452 | 6_4:+26312158 | Msa0983180:intron |
| GAAAAGAAAGTAGGTTTCGG+GGG | 0.676234 | 6_4:+26312159 | Msa0983180:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTTGTCAGAAAAGAAAGT+AGG | + | chr6_4:26312150-26312169 | Msa0983180:intron | 25.0% |
| ! | ATTCCTTTCTATTGAAAAGA+AGG | + | chr6_4:26312300-26312319 | Msa0983180:CDS | 25.0% |
| TCAGAAAAGAAAGTAGGTTT+CGG | + | chr6_4:26312156-26312175 | Msa0983180:intron | 30.0% | |
| ! | ACTCCTTCTTTTCAATAGAA+AGG | - | chr6_4:26312306-26312325 | None:intergenic | 30.0% |
| ACCTTTGGATTCTTAAGTAG+GGG | - | chr6_4:26312000-26312019 | None:intergenic | 35.0% | |
| GACCTTTGGATTCTTAAGTA+GGG | - | chr6_4:26312001-26312020 | None:intergenic | 35.0% | |
| TGACCTTTGGATTCTTAAGT+AGG | - | chr6_4:26312002-26312021 | None:intergenic | 35.0% | |
| GTTGTTGTGATTGAGTTTGA+GGG | - | chr6_4:26312104-26312123 | None:intergenic | 35.0% | |
| TGTTGTTGTGATTGAGTTTG+AGG | - | chr6_4:26312105-26312124 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGTAGGTTTC+GGG | + | chr6_4:26312157-26312176 | Msa0983180:intron | 35.0% | |
| AGAAAAGAAAGTAGGTTTCG+GGG | + | chr6_4:26312158-26312177 | Msa0983180:intron | 35.0% | |
| ! | TTCATTGATTAGTACACCTC+CGG | + | chr6_4:26312186-26312205 | Msa0983180:CDS | 35.0% |
| GTCAATCTCAGAGATCTTAT+CGG | - | chr6_4:26312257-26312276 | None:intergenic | 35.0% | |
| CCTTTGGATTCTTAAGTAGG+GGG | - | chr6_4:26311999-26312018 | None:intergenic | 40.0% | |
| AAGAATCCAAAGGTCACCTT+TGG | + | chr6_4:26312006-26312025 | Msa0983180:intron | 40.0% | |
| GAAAAGAAAGTAGGTTTCGG+GGG | + | chr6_4:26312159-26312178 | Msa0983180:intron | 40.0% | |
| AGCAGCACCTTGTATAGGTT+GGG | - | chr6_4:26311915-26311934 | None:intergenic | 45.0% | |
| TTCTTAAGTAGGGGGCAAAG+AGG | - | chr6_4:26311991-26312010 | None:intergenic | 45.0% | |
| CCCCCTACTTAAGAATCCAA+AGG | + | chr6_4:26311996-26312015 | Msa0983180:intron | 45.0% | |
| GCTTTGGTTACGAAAGTAGC+CGG | + | chr6_4:26312042-26312061 | Msa0983180:intron | 45.0% | |
| CTTTGGTTACGAAAGTAGCC+GGG | + | chr6_4:26312043-26312062 | Msa0983180:intron | 45.0% | |
| TTTGGTTACGAAAGTAGCCG+GGG | + | chr6_4:26312044-26312063 | Msa0983180:intron | 45.0% | |
| TCACAACAACATGTCGTGAC+CGG | + | chr6_4:26312114-26312133 | Msa0983180:intron | 45.0% | |
| CAAAATCCACCAAGCCTAAC+CGG | - | chr6_4:26312136-26312155 | None:intergenic | 45.0% | |
| ATCTCAGAGATCTTATCGGC+CGG | - | chr6_4:26312253-26312272 | None:intergenic | 45.0% | |
| ! | AGCACCTTGTATAGGTTGGG+CGG | - | chr6_4:26311912-26311931 | None:intergenic | 50.0% |
| GAGCAGCACCTTGTATAGGT+TGG | - | chr6_4:26311916-26311935 | None:intergenic | 50.0% | |
| AAGCGAGCAGCACCTTGTAT+AGG | - | chr6_4:26311920-26311939 | None:intergenic | 50.0% | |
| ACCACTACATAAGCCACTGG+TGG | - | chr6_4:26311951-26311970 | None:intergenic | 50.0% | |
| CCAGTGGCTTATGTAGTGGT+CGG | + | chr6_4:26311951-26311970 | Msa0983180:intron | 50.0% | |
| CAACAGCCAAAGGTGACCTT+TGG | - | chr6_4:26312015-26312034 | None:intergenic | 50.0% | |
| AGCGTCAAGACAACAGCCAA+AGG | - | chr6_4:26312025-26312044 | None:intergenic | 50.0% | |
| TGGCTGTTGTCTTGACGCTT+TGG | + | chr6_4:26312026-26312045 | Msa0983180:intron | 50.0% | |
| CCATCCATAAACCTAGACCC+CGG | - | chr6_4:26312064-26312083 | None:intergenic | 50.0% | |
| ACAACATGTCGTGACCGGTT+AGG | + | chr6_4:26312119-26312138 | Msa0983180:intron | 50.0% | |
| AAGAAAGTAGGTTTCGGGGG+TGG | + | chr6_4:26312162-26312181 | Msa0983180:intron | 50.0% | |
| AGAAAGTAGGTTTCGGGGGT+GGG | + | chr6_4:26312163-26312182 | Msa0983180:intron | 50.0% | |
| AATAGCCAAACCAACCCAGC+TGG | - | chr6_4:26312283-26312302 | None:intergenic | 50.0% | |
| AGCTCCGCCCAACCTATACA+AGG | + | chr6_4:26311905-26311924 | Msa0983180:CDS | 55.0% | |
| GCCACCAGTGGCTTATGTAG+TGG | + | chr6_4:26311947-26311966 | Msa0983180:CDS | 55.0% | |
| CCGACCACTACATAAGCCAC+TGG | - | chr6_4:26311954-26311973 | None:intergenic | 55.0% | |
| TACGAAAGTAGCCGGGGTCT+AGG | + | chr6_4:26312050-26312069 | Msa0983180:intron | 55.0% | |
| GTAGCCGGGGTCTAGGTTTA+TGG | + | chr6_4:26312057-26312076 | Msa0983180:intron | 55.0% | |
| CCGGGGTCTAGGTTTATGGA+TGG | + | chr6_4:26312061-26312080 | Msa0983180:intron | 55.0% | |
| ATGTCGTGACCGGTTAGGCT+TGG | + | chr6_4:26312124-26312143 | Msa0983180:intron | 55.0% | |
| !! | GTACACCTCCGGTGCTGATA+AGG | + | chr6_4:26312197-26312216 | Msa0983180:CDS | 55.0% |
| !! | ACCTCCGGTGCTGATAAGGT+CGG | + | chr6_4:26312201-26312220 | Msa0983180:CDS | 55.0% |
| AAACCTGAGACGGACGACCA+CGG | - | chr6_4:26312229-26312248 | None:intergenic | 55.0% | |
| ! | TCTGAGATTGACCAGCCAGC+TGG | + | chr6_4:26312265-26312284 | Msa0983180:CDS | 55.0% |
| CTGAGATTGACCAGCCAGCT+GGG | + | chr6_4:26312266-26312285 | Msa0983180:CDS | 55.0% | |
| TGCGCGAGTCACCTTCTTCT+AGG | + | chr6_4:26312334-26312353 | Msa0983180:CDS | 55.0% | |
| CGCTTTCTCTCAGCCACCAG+TGG | + | chr6_4:26311935-26311954 | Msa0983180:CDS | 60.0% | |
| TCGTGACCGGTTAGGCTTGG+TGG | + | chr6_4:26312127-26312146 | Msa0983180:intron | 60.0% | |
| !! | CCTCCGGTGCTGATAAGGTC+GGG | + | chr6_4:26312202-26312221 | Msa0983180:CDS | 60.0% |
| GGTCCCGACCTTATCAGCAC+CGG | - | chr6_4:26312208-26312227 | None:intergenic | 60.0% | |
| TGCTGATAAGGTCGGGACCG+TGG | + | chr6_4:26312209-26312228 | Msa0983180:CDS | 60.0% | |
| GTCGTCCGTCTCAGGTTTGC+CGG | + | chr6_4:26312231-26312250 | Msa0983180:CDS | 60.0% | |
| ATCGGCCGGCAAACCTGAGA+CGG | - | chr6_4:26312239-26312258 | None:intergenic | 60.0% | |
| GATTGACCAGCCAGCTGGGT+TGG | + | chr6_4:26312270-26312289 | Msa0983180:CDS | 60.0% | |
| !! | ACCAGCCAGCTGGGTTGGTT+TGG | + | chr6_4:26312275-26312294 | Msa0983180:CDS | 60.0% |
| CACCTTCTTCTAGGCTCCGC+TGG | + | chr6_4:26312343-26312362 | Msa0983180:CDS | 60.0% | |
| GTCCAGCGGAGCCTAGAAGA+AGG | - | chr6_4:26312348-26312367 | None:intergenic | 60.0% | |
| GAGAATGCCGTGTCGTCCAG+CGG | - | chr6_4:26312362-26312381 | None:intergenic | 60.0% | |
| ! | GGGGGCAAAGAGGAGCACGT+AGG | - | chr6_4:26311981-26312000 | None:intergenic | 65.0% |
| ! | CCCGACCTTATCAGCACCGG+AGG | - | chr6_4:26312205-26312224 | None:intergenic | 65.0% |
| GCCAAACCAACCCAGCTGGC+TGG | - | chr6_4:26312279-26312298 | None:intergenic | 65.0% | |
| CTAGGCTCCGCTGGACGACA+CGG | + | chr6_4:26312352-26312371 | Msa0983180:CDS | 65.0% | |
| GGACCGTGGTCGTCCGTCTC+AGG | + | chr6_4:26312223-26312242 | Msa0983180:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 26311873 | 26312387 | 26311873 | ID=Msa0983180;Name=Msa0983180 |
| chr6_4 | mRNA | 26311873 | 26312387 | 26311873 | ID=Msa0983180-mRNA-1;Parent=Msa0983180;Name=Msa0983180-mRNA-1;_AED=0.27;_eAED=0.39;_QI=0|0|0|1|0|0|2|0|103 |
| chr6_4 | exon | 26311873 | 26311968 | 26311873 | ID=Msa0983180-mRNA-1:exon:7410;Parent=Msa0983180-mRNA-1 |
| chr6_4 | exon | 26312172 | 26312387 | 26312172 | ID=Msa0983180-mRNA-1:exon:7411;Parent=Msa0983180-mRNA-1 |
| chr6_4 | CDS | 26311873 | 26311968 | 26311873 | ID=Msa0983180-mRNA-1:cds;Parent=Msa0983180-mRNA-1 |
| chr6_4 | CDS | 26312172 | 26312387 | 26312172 | ID=Msa0983180-mRNA-1:cds;Parent=Msa0983180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
