Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944930 | KAF1856957.1 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 5.17e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944930 | A0A6A5L5V7 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 2.47e-64 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011660 | Msa0944930 | 0.808227 | 3.435004e-50 | -8.615850e-47 |
| Msa0020410 | Msa0944930 | -0.808080 | 3.691464e-50 | -8.615850e-47 |
| Msa0026430 | Msa0944930 | -0.805896 | 1.069711e-49 | -8.615850e-47 |
| Msa0026910 | Msa0944930 | -0.803059 | 4.175461e-49 | -8.615850e-47 |
| Msa0034970 | Msa0944930 | -0.804136 | 2.496614e-49 | -8.615850e-47 |
| Msa0037880 | Msa0944930 | -0.810456 | 1.142399e-50 | -8.615850e-47 |
| Msa0043980 | Msa0944930 | -0.833882 | 4.130112e-56 | -8.615850e-47 |
| Msa0044000 | Msa0944930 | -0.815773 | 7.786400e-52 | -8.615850e-47 |
| Msa0054480 | Msa0944930 | -0.800759 | 1.239606e-48 | -8.615850e-47 |
| Msa0065950 | Msa0944930 | -0.807283 | 5.451877e-50 | -8.615850e-47 |
| Msa0069500 | Msa0944930 | 0.828013 | 1.138083e-54 | -8.615850e-47 |
| Msa0089820 | Msa0944930 | -0.818186 | 2.234993e-52 | -8.615850e-47 |
| Msa0090550 | Msa0944930 | -0.801382 | 9.243221e-49 | -8.615850e-47 |
| Msa0090570 | Msa0944930 | -0.813112 | 3.017518e-51 | -8.615850e-47 |
| Msa0104800 | Msa0944930 | -0.813449 | 2.545256e-51 | -8.615850e-47 |
| Msa0114430 | Msa0944930 | -0.800217 | 1.598704e-48 | -8.615850e-47 |
| Msa0609410 | Msa0944930 | 0.814300 | 1.652589e-51 | -8.615850e-47 |
| Msa0610430 | Msa0944930 | -0.801964 | 7.022249e-49 | -8.615850e-47 |
| Msa0657750 | Msa0944930 | -0.806493 | 8.007752e-50 | -8.615850e-47 |
| Msa0673460 | Msa0944930 | -0.822211 | 2.674540e-53 | -8.615850e-47 |
| Msa0687020 | Msa0944930 | -0.801805 | 7.572278e-49 | -8.615850e-47 |
| Msa0692040 | Msa0944930 | 0.807412 | 5.118913e-50 | -8.615850e-47 |
| Msa0697990 | Msa0944930 | 0.845702 | 3.444330e-59 | -8.615850e-47 |
| Msa0703780 | Msa0944930 | -0.800361 | 1.494048e-48 | -8.615850e-47 |
| Msa0709160 | Msa0944930 | -0.812989 | 3.210883e-51 | -8.615850e-47 |
| Msa0716960 | Msa0944930 | -0.805814 | 1.113156e-49 | -8.615850e-47 |
| Msa0717010 | Msa0944930 | -0.807442 | 5.044499e-50 | -8.615850e-47 |
| Msa0721280 | Msa0944930 | -0.816150 | 6.413428e-52 | -8.615850e-47 |
| Msa0763890 | Msa0944930 | -0.814973 | 1.172514e-51 | -8.615850e-47 |
| Msa0763920 | Msa0944930 | -0.803671 | 3.119148e-49 | -8.615850e-47 |
| Msa0771720 | Msa0944930 | -0.809663 | 1.692949e-50 | -8.615850e-47 |
| Msa0790660 | Msa0944930 | 0.820176 | 7.875424e-53 | -8.615850e-47 |
| Msa0794510 | Msa0944930 | 0.800811 | 1.209525e-48 | -8.615850e-47 |
| Msa0794730 | Msa0944930 | -0.806753 | 7.058942e-50 | -8.615850e-47 |
| Msa0817460 | Msa0944930 | -0.817613 | 3.010623e-52 | -8.615850e-47 |
| Msa0820850 | Msa0944930 | -0.812874 | 3.402799e-51 | -8.615850e-47 |
| Msa0831850 | Msa0944930 | -0.800818 | 1.205950e-48 | -8.615850e-47 |
| Msa0127800 | Msa0944930 | -0.822807 | 1.944159e-53 | -8.615850e-47 |
| Msa0138020 | Msa0944930 | -0.809730 | 1.638076e-50 | -8.615850e-47 |
| Msa0151180 | Msa0944930 | -0.808145 | 3.576177e-50 | -8.615850e-47 |
| Msa0159770 | Msa0944930 | -0.807798 | 4.239846e-50 | -8.615850e-47 |
| Msa0173070 | Msa0944930 | -0.805291 | 1.432892e-49 | -8.615850e-47 |
| Msa0175840 | Msa0944930 | -0.800632 | 1.316064e-48 | -8.615850e-47 |
| Msa0206010 | Msa0944930 | -0.809244 | 2.082427e-50 | -8.615850e-47 |
| Msa0212930 | Msa0944930 | -0.814455 | 1.527283e-51 | -8.615850e-47 |
| Msa0220440 | Msa0944930 | -0.823501 | 1.338717e-53 | -8.615850e-47 |
| Msa0229380 | Msa0944930 | -0.812478 | 4.154183e-51 | -8.615850e-47 |
| Msa0376910 | Msa0944930 | -0.815327 | 9.783503e-52 | -8.615850e-47 |
| Msa0412840 | Msa0944930 | -0.819006 | 1.456980e-52 | -8.615850e-47 |
| Msa0433360 | Msa0944930 | -0.803599 | 3.227978e-49 | -8.615850e-47 |
| Msa0433410 | Msa0944930 | 0.802961 | 4.376667e-49 | -8.615850e-47 |
| Msa0471900 | Msa0944930 | -0.819853 | 9.338300e-53 | -8.615850e-47 |
| Msa0477130 | Msa0944930 | 0.822296 | 2.555783e-53 | -8.615850e-47 |
| Msa0481280 | Msa0944930 | -0.804216 | 2.403359e-49 | -8.615850e-47 |
| Msa0253200 | Msa0944930 | -0.829800 | 4.203317e-55 | -8.615850e-47 |
| Msa0261720 | Msa0944930 | -0.826503 | 2.618130e-54 | -8.615850e-47 |
| Msa0271530 | Msa0944930 | -0.815013 | 1.148931e-51 | -8.615850e-47 |
| Msa0287410 | Msa0944930 | -0.830243 | 3.277669e-55 | -8.615850e-47 |
| Msa0292030 | Msa0944930 | -0.828008 | 1.141176e-54 | -8.615850e-47 |
| Msa0306210 | Msa0944930 | 0.800176 | 1.629653e-48 | -8.615850e-47 |
| Msa0319170 | Msa0944930 | -0.838083 | 3.550143e-57 | -8.615850e-47 |
| Msa0326110 | Msa0944930 | -0.824093 | 9.730656e-54 | -8.615850e-47 |
| Msa0336320 | Msa0944930 | -0.801579 | 8.424162e-49 | -8.615850e-47 |
| Msa0337060 | Msa0944930 | -0.815419 | 9.335130e-52 | -8.615850e-47 |
| Msa0344910 | Msa0944930 | -0.800570 | 1.354357e-48 | -8.615850e-47 |
| Msa0344980 | Msa0944930 | -0.800601 | 1.335364e-48 | -8.615850e-47 |
| Msa0484780 | Msa0944930 | -0.806046 | 9.949320e-50 | -8.615850e-47 |
| Msa0512750 | Msa0944930 | -0.808416 | 3.130181e-50 | -8.615850e-47 |
| Msa0518380 | Msa0944930 | -0.819606 | 1.063478e-52 | -8.615850e-47 |
| Msa0556060 | Msa0944930 | -0.805468 | 1.315610e-49 | -8.615850e-47 |
| Msa0842650 | Msa0944930 | -0.800512 | 1.392297e-48 | -8.615850e-47 |
| Msa0849030 | Msa0944930 | -0.821523 | 3.860008e-53 | -8.615850e-47 |
| Msa0860030 | Msa0944930 | 0.815493 | 8.988237e-52 | -8.615850e-47 |
| Msa0861130 | Msa0944930 | -0.808422 | 3.120886e-50 | -8.615850e-47 |
| Msa0872440 | Msa0944930 | -0.810993 | 8.741777e-51 | -8.615850e-47 |
| Msa0876580 | Msa0944930 | -0.804577 | 2.020426e-49 | -8.615850e-47 |
| Msa0908830 | Msa0944930 | 0.877782 | 4.768526e-69 | -8.615850e-47 |
| Msa0908840 | Msa0944930 | 0.989640 | 5.337476e-179 | -8.615850e-47 |
| Msa0908850 | Msa0944930 | 0.877769 | 4.816045e-69 | -8.615850e-47 |
| Msa0908870 | Msa0944930 | 0.846340 | 2.310456e-59 | -8.615850e-47 |
| Msa0908920 | Msa0944930 | 0.865345 | 6.315883e-65 | -8.615850e-47 |
| Msa0908930 | Msa0944930 | 0.859391 | 4.272981e-63 | -8.615850e-47 |
| Msa0920060 | Msa0944930 | 0.827231 | 1.753621e-54 | -8.615850e-47 |
| Msa0924310 | Msa0944930 | -0.800590 | 1.341869e-48 | -8.615850e-47 |
| Msa0933100 | Msa0944930 | -0.832843 | 7.501019e-56 | -8.615850e-47 |
| Msa0944900 | Msa0944930 | 0.882152 | 1.324129e-70 | -8.615850e-47 |
| Msa0944920 | Msa0944930 | 0.894158 | 3.209013e-75 | -8.615850e-47 |
| Msa0944930 | Msa0944940 | 0.878408 | 2.878206e-69 | -8.615850e-47 |
| Msa0944930 | Msa0944990 | 0.875925 | 2.098219e-68 | -8.615850e-47 |
| Msa0944930 | Msa0962840 | -0.802265 | 6.089982e-49 | -8.615850e-47 |
| Msa0944930 | Msa0969520 | -0.806505 | 7.963553e-50 | -8.615850e-47 |
| Msa0944930 | Msa0970990 | -0.802506 | 5.432053e-49 | -8.615850e-47 |
| Msa0944930 | Msa0983170 | 0.883325 | 4.937914e-71 | -8.615850e-47 |
| Msa0944930 | Msa0983180 | 0.991043 | 1.334191e-185 | -8.615850e-47 |
| Msa0944930 | Msa0983190 | 0.888428 | 5.955404e-73 | -8.615850e-47 |
| Msa0944930 | Msa0983210 | 0.860189 | 2.456577e-63 | -8.615850e-47 |
| Msa0944930 | Msa0983220 | 0.838281 | 3.155761e-57 | -8.615850e-47 |
| Msa0944930 | Msa0983260 | 0.873886 | 1.038695e-67 | -8.615850e-47 |
| Msa0944930 | Msa0983300 | 0.852909 | 3.386875e-61 | -8.615850e-47 |
| Msa0944930 | Msa0983320 | 0.885193 | 1.003775e-71 | -8.615850e-47 |
| Msa0944930 | Msa0983350 | 0.850864 | 1.289105e-60 | -8.615850e-47 |
| Msa0944930 | Msa0983460 | 0.871391 | 7.084648e-67 | -8.615850e-47 |
| Msa0944930 | Msa0983490 | 0.849703 | 2.728289e-60 | -8.615850e-47 |
| Msa0944930 | Msa0983500 | 0.875650 | 2.606884e-68 | -8.615850e-47 |
| Msa0944930 | Msa0983520 | 0.887506 | 1.344583e-72 | -8.615850e-47 |
| Msa0944930 | Msa0983530 | 0.997364 | 3.134859e-241 | -8.615850e-47 |
| Msa0944930 | Msa0983540 | 0.887209 | 1.743919e-72 | -8.615850e-47 |
| Msa0944930 | Msa0983550 | 0.805457 | 1.322467e-49 | -8.615850e-47 |
| Msa0944930 | Msa0994370 | -0.821878 | 3.194701e-53 | -8.615850e-47 |
| Msa0944930 | Msa1023920 | -0.806838 | 6.770826e-50 | -8.615850e-47 |
| Msa0944930 | Msa1034150 | -0.817487 | 3.215471e-52 | -8.615850e-47 |
| Msa0944930 | Msa1063420 | -0.806673 | 7.337637e-50 | -8.615850e-47 |
| Msa0944930 | Msa1063510 | -0.804380 | 2.221601e-49 | -8.615850e-47 |
| Msa0944930 | Msa1082500 | -0.800463 | 1.424599e-48 | -8.615850e-47 |
| Msa0944930 | Msa1107900 | -0.808846 | 2.533907e-50 | -8.615850e-47 |
| Msa0944930 | Msa1109680 | -0.810353 | 1.202316e-50 | -8.615850e-47 |
| Msa0944930 | Msa1129550 | -0.802100 | 6.583967e-49 | -8.615850e-47 |
| Msa0944930 | Msa1135470 | -0.805462 | 1.319616e-49 | -8.615850e-47 |
| Msa0944930 | Msa1137570 | -0.803162 | 3.976849e-49 | -8.615850e-47 |
| Msa0944930 | Msa1144040 | -0.809641 | 1.711666e-50 | -8.615850e-47 |
| Msa0944930 | Msa1174040 | -0.820096 | 8.217366e-53 | -8.615850e-47 |
| Msa0944930 | Msa1181250 | -0.804508 | 2.089141e-49 | -8.615850e-47 |
| Msa0944930 | Msa1183100 | 0.804116 | 2.520725e-49 | -8.615850e-47 |
| Msa0944930 | Msa1186360 | -0.802708 | 4.935108e-49 | -8.615850e-47 |
| Msa0944930 | Msa1193290 | -0.816255 | 6.077564e-52 | -8.615850e-47 |
| Msa0944930 | Msa1201560 | -0.803759 | 2.989991e-49 | -8.615850e-47 |
| Msa0944930 | Msa1210020 | -0.815547 | 8.744366e-52 | -8.615850e-47 |
| Msa0944930 | Msa1211140 | 0.808570 | 2.903148e-50 | -8.615850e-47 |
| Msa0944930 | Msa1217470 | -0.803028 | 4.238527e-49 | -8.615850e-47 |
| Msa0944930 | Msa1228620 | 0.865765 | 4.658274e-65 | -8.615850e-47 |
| Msa0944930 | Msa1253020 | -0.806914 | 6.525593e-50 | -8.615850e-47 |
| Msa0944930 | Msa1254730 | -0.808743 | 2.665740e-50 | -8.615850e-47 |
| Msa0944930 | Msa1259590 | 0.807563 | 4.754562e-50 | -8.615850e-47 |
| Msa0944930 | Msa1263290 | 0.801834 | 7.468400e-49 | -8.615850e-47 |
| Msa0944930 | Msa1267520 | -0.800121 | 1.672005e-48 | -8.615850e-47 |
| Msa0944930 | Msa1270660 | -0.810385 | 1.183539e-50 | -8.615850e-47 |
| Msa0944930 | Msa1270730 | -0.826298 | 2.928800e-54 | -8.615850e-47 |
| Msa0944930 | Msa1276440 | -0.823990 | 1.028628e-53 | -8.615850e-47 |
| Msa0944930 | Msa1294820 | -0.816590 | 5.114038e-52 | -8.615850e-47 |
| Msa0944930 | Msa1298510 | -0.819814 | 9.530356e-53 | -8.615850e-47 |
| Msa0944930 | Msa1299290 | 0.801235 | 9.908120e-49 | -8.615850e-47 |
| Msa0944930 | Msa1305340 | -0.802128 | 6.498852e-49 | -8.615850e-47 |
| Msa0944930 | Msa1305710 | -0.813004 | 3.187943e-51 | -8.615850e-47 |
| Msa0944930 | Msa1331000 | -0.801640 | 8.185270e-49 | -8.615850e-47 |
| Msa0944930 | Msa1331320 | -0.806519 | 7.910367e-50 | -8.615850e-47 |
| Msa0944930 | Msa1357890 | -0.819393 | 1.189430e-52 | -8.615850e-47 |
| Msa0944930 | Msa1359040 | -0.802111 | 6.550303e-49 | -8.615850e-47 |
| Msa0944930 | Msa1370070 | 0.818965 | 1.488049e-52 | -8.615850e-47 |
| Msa0944930 | Msa1374470 | -0.800959 | 1.128548e-48 | -8.615850e-47 |
| Msa0944930 | Msa1391970 | 0.851355 | 9.369630e-61 | -8.615850e-47 |
| Msa0944930 | Msa1392010 | 0.884417 | 1.951641e-71 | -8.615850e-47 |
| Msa0944930 | Msa1392030 | 0.849388 | 3.339544e-60 | -8.615850e-47 |
| Msa0944930 | Msa1392120 | 0.865928 | 4.137040e-65 | -8.615850e-47 |
| Msa0944930 | Msa1392160 | 0.873588 | 1.309185e-67 | -8.615850e-47 |
| Msa0944930 | Msa1397120 | -0.808918 | 2.445829e-50 | -8.615850e-47 |
| Msa0944930 | Msa1398090 | -0.814117 | 1.814140e-51 | -8.615850e-47 |
| Msa0944930 | Msa1403890 | -0.806439 | 8.221630e-50 | -8.615850e-47 |
| Msa0944930 | Msa1407600 | -0.828493 | 8.719694e-55 | -8.615850e-47 |
| Msa0944930 | Msa1417200 | -0.803003 | 4.289679e-49 | -8.615850e-47 |
| Msa0944930 | Msa1434420 | 0.812008 | 5.262154e-51 | -8.615850e-47 |
| Msa0944930 | Msa1462290 | -0.803592 | 3.238676e-49 | -8.615850e-47 |
| Msa0944930 | Msa1466540 | -0.828639 | 8.041166e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAAGAAAGTAGGTTTC+GGG | 0.299621 | 6_3:-22377508 | Msa0944930:intron |
| TGCGCGAGTCACCTTCTTCT+AGG | 0.325482 | 6_3:-22377331 | Msa0944930:CDS |
| ACCAGCCAGCTGGGTTGGTT+TGG | 0.332153 | 6_3:-22377390 | Msa0944930:CDS |
| CGCAATGGCTTTCTCTGATA+GGG | 0.371132 | 6_3:-22377796 | None:intergenic |
| ATTCCTTTCTATTGAAAAGA+AGG | 0.387353 | 6_3:-22377365 | Msa0944930:CDS |
| GCGCAATGGCTTTCTCTGAT+AGG | 0.391358 | 6_3:-22377797 | None:intergenic |
| GTCGTCCGTCTCAGGTTTGC+CGG | 0.398406 | 6_3:-22377434 | Msa0944930:CDS |
| GGACCGTGGTCGTCCGTCTC+AGG | 0.441663 | 6_3:-22377442 | Msa0944930:CDS |
| AGCAGCACCTTGTATAGGTT+GGG | 0.447543 | 6_3:+22377753 | None:intergenic |
| GTACACCTCCGGTGCTGATA+AGG | 0.450222 | 6_3:-22377468 | Msa0944930:CDS |
| GATTGACCAGCCAGCTGGGT+TGG | 0.459599 | 6_3:-22377395 | Msa0944930:CDS |
| GTCAATCTCAGAGATCTTAT+CGG | 0.462954 | 6_3:+22377411 | None:intergenic |
| AAGCGAGCAGCACCTTGTAT+AGG | 0.473472 | 6_3:+22377748 | None:intergenic |
| TCTGAGATTGACCAGCCAGC+TGG | 0.486873 | 6_3:-22377400 | Msa0944930:CDS |
| TTCATTGATTAGTACACCTC+CGG | 0.492064 | 6_3:-22377479 | Msa0944930:CDS |
| CGCTTTCTCTCAGCCACCAG+TGG | 0.505851 | 6_3:-22377730 | Msa0944930:CDS |
| CTGAGATTGACCAGCCAGCT+GGG | 0.514570 | 6_3:-22377399 | Msa0944930:CDS |
| CACCTTCTTCTAGGCTCCGC+TGG | 0.516734 | 6_3:-22377322 | Msa0944930:CDS |
| GCCAAACCAACCCAGCTGGC+TGG | 0.523772 | 6_3:+22377389 | None:intergenic |
| GAGCAGCACCTTGTATAGGT+TGG | 0.534433 | 6_3:+22377752 | None:intergenic |
| ATCTCAGAGATCTTATCGGC+CGG | 0.550066 | 6_3:+22377415 | None:intergenic |
| AATAGCCAAACCAACCCAGC+TGG | 0.553661 | 6_3:+22377385 | None:intergenic |
| CCTCCGGTGCTGATAAGGTC+GGG | 0.561319 | 6_3:-22377463 | Msa0944930:CDS |
| ATCGGCCGGCAAACCTGAGA+CGG | 0.579939 | 6_3:+22377429 | None:intergenic |
| GCCACCAGTGGCTTATGTAG+TGG | 0.581920 | 6_3:-22377718 | Msa0944930:intron |
| TGCTGATAAGGTCGGGACCG+TGG | 0.590314 | 6_3:-22377456 | Msa0944930:CDS |
| GTCCAGCGGAGCCTAGAAGA+AGG | 0.604022 | 6_3:+22377320 | None:intergenic |
| CTAGGCTCCGCTGGACGACA+CGG | 0.612977 | 6_3:-22377313 | Msa0944930:CDS |
| GAGAATGCCGTGTCGTCCAG+CGG | 0.617479 | 6_3:+22377306 | None:intergenic |
| CCCGACCTTATCAGCACCGG+AGG | 0.624401 | 6_3:+22377463 | None:intergenic |
| AGCACCTTGTATAGGTTGGG+CGG | 0.628644 | 6_3:+22377756 | None:intergenic |
| AGCTCCGCCCAACCTATACA+AGG | 0.631063 | 6_3:-22377760 | Msa0944930:CDS |
| CCGACCACTACATAAGCCAC+TGG | 0.631161 | 6_3:+22377714 | None:intergenic |
| ACCTCCGGTGCTGATAAGGT+CGG | 0.637828 | 6_3:-22377464 | Msa0944930:CDS |
| GCAATGGCTTTCTCTGATAG+GGG | 0.641776 | 6_3:-22377795 | Msa0944930:CDS |
| GGTCCCGACCTTATCAGCAC+CGG | 0.654281 | 6_3:+22377460 | None:intergenic |
| AAACCTGAGACGGACGACCA+CGG | 0.659367 | 6_3:+22377439 | None:intergenic |
| ACCACTACATAAGCCACTGG+TGG | 0.667213 | 6_3:+22377717 | None:intergenic |
| AGAAAAGAAAGTAGGTTTCG+GGG | 0.671452 | 6_3:-22377507 | Msa0944930:intron |
| GAAAAGAAAGTAGGTTTCGG+GGG | 0.676234 | 6_3:-22377506 | Msa0944930:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTTGTCAGAAAAGAAAGT+AGG | - | chr6_3:22377577-22377596 | Msa0944930:intron | 25.0% |
| ! | ATTCCTTTCTATTGAAAAGA+AGG | - | chr6_3:22377727-22377746 | Msa0944930:CDS | 25.0% |
| TCAGAAAAGAAAGTAGGTTT+CGG | - | chr6_3:22377583-22377602 | Msa0944930:intron | 30.0% | |
| ! | ACTCCTTCTTTTCAATAGAA+AGG | + | chr6_3:22377733-22377752 | None:intergenic | 30.0% |
| ACCTTTGGATTCTTAAGTAG+GGG | + | chr6_3:22377427-22377446 | None:intergenic | 35.0% | |
| GACCTTTGGATTCTTAAGTA+GGG | + | chr6_3:22377428-22377447 | None:intergenic | 35.0% | |
| TGACCTTTGGATTCTTAAGT+AGG | + | chr6_3:22377429-22377448 | None:intergenic | 35.0% | |
| GTTGTTGTGATTGAGTTTGA+GGG | + | chr6_3:22377531-22377550 | None:intergenic | 35.0% | |
| TGTTGTTGTGATTGAGTTTG+AGG | + | chr6_3:22377532-22377551 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGTAGGTTTC+GGG | - | chr6_3:22377584-22377603 | Msa0944930:intron | 35.0% | |
| AGAAAAGAAAGTAGGTTTCG+GGG | - | chr6_3:22377585-22377604 | Msa0944930:intron | 35.0% | |
| ! | TTCATTGATTAGTACACCTC+CGG | - | chr6_3:22377613-22377632 | Msa0944930:intron | 35.0% |
| GTCAATCTCAGAGATCTTAT+CGG | + | chr6_3:22377684-22377703 | None:intergenic | 35.0% | |
| CCTTTGGATTCTTAAGTAGG+GGG | + | chr6_3:22377426-22377445 | None:intergenic | 40.0% | |
| AAGAATCCAAAGGTCACCTT+TGG | - | chr6_3:22377433-22377452 | Msa0944930:CDS | 40.0% | |
| GAAAAGAAAGTAGGTTTCGG+GGG | - | chr6_3:22377586-22377605 | Msa0944930:intron | 40.0% | |
| AGCAGCACCTTGTATAGGTT+GGG | + | chr6_3:22377342-22377361 | None:intergenic | 45.0% | |
| TTCTTAAGTAGGGGGCAAAG+AGG | + | chr6_3:22377418-22377437 | None:intergenic | 45.0% | |
| CCCCCTACTTAAGAATCCAA+AGG | - | chr6_3:22377423-22377442 | Msa0944930:CDS | 45.0% | |
| GCTTTGGTTACGAAAGTAGC+CGG | - | chr6_3:22377469-22377488 | Msa0944930:CDS | 45.0% | |
| CTTTGGTTACGAAAGTAGCC+GGG | - | chr6_3:22377470-22377489 | Msa0944930:CDS | 45.0% | |
| TTTGGTTACGAAAGTAGCCG+GGG | - | chr6_3:22377471-22377490 | Msa0944930:CDS | 45.0% | |
| TCACAACAACATGTCGTGAC+CGG | - | chr6_3:22377541-22377560 | Msa0944930:intron | 45.0% | |
| CAAAATCCACCAAGCCTAAC+CGG | + | chr6_3:22377563-22377582 | None:intergenic | 45.0% | |
| ATCTCAGAGATCTTATCGGC+CGG | + | chr6_3:22377680-22377699 | None:intergenic | 45.0% | |
| ! | AGCACCTTGTATAGGTTGGG+CGG | + | chr6_3:22377339-22377358 | None:intergenic | 50.0% |
| GAGCAGCACCTTGTATAGGT+TGG | + | chr6_3:22377343-22377362 | None:intergenic | 50.0% | |
| AAGCGAGCAGCACCTTGTAT+AGG | + | chr6_3:22377347-22377366 | None:intergenic | 50.0% | |
| ACCACTACATAAGCCACTGG+TGG | + | chr6_3:22377378-22377397 | None:intergenic | 50.0% | |
| CCAGTGGCTTATGTAGTGGT+CGG | - | chr6_3:22377378-22377397 | Msa0944930:CDS | 50.0% | |
| CAACAGCCAAAGGTGACCTT+TGG | + | chr6_3:22377442-22377461 | None:intergenic | 50.0% | |
| AGCGTCAAGACAACAGCCAA+AGG | + | chr6_3:22377452-22377471 | None:intergenic | 50.0% | |
| TGGCTGTTGTCTTGACGCTT+TGG | - | chr6_3:22377453-22377472 | Msa0944930:CDS | 50.0% | |
| CCATCCATAAACCTAGACCC+CGG | + | chr6_3:22377491-22377510 | None:intergenic | 50.0% | |
| ACAACATGTCGTGACCGGTT+AGG | - | chr6_3:22377546-22377565 | Msa0944930:intron | 50.0% | |
| AAGAAAGTAGGTTTCGGGGG+TGG | - | chr6_3:22377589-22377608 | Msa0944930:intron | 50.0% | |
| AGAAAGTAGGTTTCGGGGGT+GGG | - | chr6_3:22377590-22377609 | Msa0944930:intron | 50.0% | |
| AATAGCCAAACCAACCCAGC+TGG | + | chr6_3:22377710-22377729 | None:intergenic | 50.0% | |
| AGCTCCGCCCAACCTATACA+AGG | - | chr6_3:22377332-22377351 | Msa0944930:CDS | 55.0% | |
| GCCACCAGTGGCTTATGTAG+TGG | - | chr6_3:22377374-22377393 | Msa0944930:CDS | 55.0% | |
| CCGACCACTACATAAGCCAC+TGG | + | chr6_3:22377381-22377400 | None:intergenic | 55.0% | |
| TACGAAAGTAGCCGGGGTCT+AGG | - | chr6_3:22377477-22377496 | Msa0944930:CDS | 55.0% | |
| GTAGCCGGGGTCTAGGTTTA+TGG | - | chr6_3:22377484-22377503 | Msa0944930:CDS | 55.0% | |
| CCGGGGTCTAGGTTTATGGA+TGG | - | chr6_3:22377488-22377507 | Msa0944930:CDS | 55.0% | |
| ATGTCGTGACCGGTTAGGCT+TGG | - | chr6_3:22377551-22377570 | Msa0944930:intron | 55.0% | |
| !! | GTACACCTCCGGTGCTGATA+AGG | - | chr6_3:22377624-22377643 | Msa0944930:intron | 55.0% |
| !! | ACCTCCGGTGCTGATAAGGT+CGG | - | chr6_3:22377628-22377647 | Msa0944930:intron | 55.0% |
| AAACCTGAGACGGACGACCA+CGG | + | chr6_3:22377656-22377675 | None:intergenic | 55.0% | |
| ! | TCTGAGATTGACCAGCCAGC+TGG | - | chr6_3:22377692-22377711 | Msa0944930:intron | 55.0% |
| CTGAGATTGACCAGCCAGCT+GGG | - | chr6_3:22377693-22377712 | Msa0944930:intron | 55.0% | |
| TGCGCGAGTCACCTTCTTCT+AGG | - | chr6_3:22377761-22377780 | Msa0944930:CDS | 55.0% | |
| CGCTTTCTCTCAGCCACCAG+TGG | - | chr6_3:22377362-22377381 | Msa0944930:CDS | 60.0% | |
| TCGTGACCGGTTAGGCTTGG+TGG | - | chr6_3:22377554-22377573 | Msa0944930:intron | 60.0% | |
| !! | CCTCCGGTGCTGATAAGGTC+GGG | - | chr6_3:22377629-22377648 | Msa0944930:intron | 60.0% |
| GGTCCCGACCTTATCAGCAC+CGG | + | chr6_3:22377635-22377654 | None:intergenic | 60.0% | |
| TGCTGATAAGGTCGGGACCG+TGG | - | chr6_3:22377636-22377655 | Msa0944930:intron | 60.0% | |
| GTCGTCCGTCTCAGGTTTGC+CGG | - | chr6_3:22377658-22377677 | Msa0944930:intron | 60.0% | |
| ATCGGCCGGCAAACCTGAGA+CGG | + | chr6_3:22377666-22377685 | None:intergenic | 60.0% | |
| GATTGACCAGCCAGCTGGGT+TGG | - | chr6_3:22377697-22377716 | Msa0944930:intron | 60.0% | |
| !! | ACCAGCCAGCTGGGTTGGTT+TGG | - | chr6_3:22377702-22377721 | Msa0944930:intron | 60.0% |
| CACCTTCTTCTAGGCTCCGC+TGG | - | chr6_3:22377770-22377789 | Msa0944930:CDS | 60.0% | |
| GTCCAGCGGAGCCTAGAAGA+AGG | + | chr6_3:22377775-22377794 | None:intergenic | 60.0% | |
| GAGAATGCCGTGTCGTCCAG+CGG | + | chr6_3:22377789-22377808 | None:intergenic | 60.0% | |
| ! | GGGGGCAAAGAGGAGCACGT+AGG | + | chr6_3:22377408-22377427 | None:intergenic | 65.0% |
| ! | CCCGACCTTATCAGCACCGG+AGG | + | chr6_3:22377632-22377651 | None:intergenic | 65.0% |
| GCCAAACCAACCCAGCTGGC+TGG | + | chr6_3:22377706-22377725 | None:intergenic | 65.0% | |
| CTAGGCTCCGCTGGACGACA+CGG | - | chr6_3:22377779-22377798 | Msa0944930:CDS | 65.0% | |
| GGACCGTGGTCGTCCGTCTC+AGG | - | chr6_3:22377650-22377669 | Msa0944930:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 22377300 | 22377814 | 22377300 | ID=Msa0944930;Name=Msa0944930 |
| chr6_3 | mRNA | 22377300 | 22377814 | 22377300 | ID=Msa0944930-mRNA-1;Parent=Msa0944930;Name=Msa0944930-mRNA-1;_AED=0.27;_eAED=0.30;_QI=0|0|0|1|0|0|2|0|103 |
| chr6_3 | exon | 22377719 | 22377814 | 22377719 | ID=Msa0944930-mRNA-1:exon:6577;Parent=Msa0944930-mRNA-1 |
| chr6_3 | exon | 22377300 | 22377515 | 22377300 | ID=Msa0944930-mRNA-1:exon:6576;Parent=Msa0944930-mRNA-1 |
| chr6_3 | CDS | 22377719 | 22377814 | 22377719 | ID=Msa0944930-mRNA-1:cds;Parent=Msa0944930-mRNA-1 |
| chr6_3 | CDS | 22377300 | 22377515 | 22377300 | ID=Msa0944930-mRNA-1:cds;Parent=Msa0944930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
