Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983530 | KAF1856957.1 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 5.17e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0983530 | A0A6A5L5V7 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 2.47e-64 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011660 | Msa0983530 | 0.803987 | 2.681608e-49 | -8.615850e-47 |
| Msa0020410 | Msa0983530 | -0.809835 | 1.554708e-50 | -8.615850e-47 |
| Msa0026430 | Msa0983530 | -0.805724 | 1.162694e-49 | -8.615850e-47 |
| Msa0026910 | Msa0983530 | -0.803403 | 3.544920e-49 | -8.615850e-47 |
| Msa0034970 | Msa0983530 | -0.803370 | 3.600360e-49 | -8.615850e-47 |
| Msa0037880 | Msa0983530 | -0.808122 | 3.616238e-50 | -8.615850e-47 |
| Msa0043980 | Msa0983530 | -0.835064 | 2.085924e-56 | -8.615850e-47 |
| Msa0044000 | Msa0983530 | -0.817987 | 2.479864e-52 | -8.615850e-47 |
| Msa0052800 | Msa0983530 | -0.800695 | 1.277183e-48 | -8.615850e-47 |
| Msa0054480 | Msa0983530 | -0.803283 | 3.753092e-49 | -8.615850e-47 |
| Msa0065950 | Msa0983530 | -0.807529 | 4.835014e-50 | -8.615850e-47 |
| Msa0069500 | Msa0983530 | 0.829565 | 4.795322e-55 | -8.615850e-47 |
| Msa0079070 | Msa0983530 | -0.801210 | 1.002519e-48 | -8.615850e-47 |
| Msa0089820 | Msa0983530 | -0.817027 | 4.079146e-52 | -8.615850e-47 |
| Msa0090550 | Msa0983530 | -0.800049 | 1.729456e-48 | -8.615850e-47 |
| Msa0090570 | Msa0983530 | -0.814398 | 1.572224e-51 | -8.615850e-47 |
| Msa0101830 | Msa0983530 | -0.802903 | 4.498411e-49 | -8.615850e-47 |
| Msa0104800 | Msa0983530 | -0.816283 | 5.989845e-52 | -8.615850e-47 |
| Msa0112770 | Msa0983530 | -0.802000 | 6.905572e-49 | -8.615850e-47 |
| Msa0609410 | Msa0983530 | 0.809024 | 2.321255e-50 | -8.615850e-47 |
| Msa0610430 | Msa0983530 | -0.801000 | 1.106871e-48 | -8.615850e-47 |
| Msa0657750 | Msa0983530 | -0.808179 | 3.517313e-50 | -8.615850e-47 |
| Msa0673460 | Msa0983530 | -0.822528 | 2.257706e-53 | -8.615850e-47 |
| Msa0687020 | Msa0983530 | -0.803760 | 2.988603e-49 | -8.615850e-47 |
| Msa0692040 | Msa0983530 | 0.805578 | 1.247622e-49 | -8.615850e-47 |
| Msa0697990 | Msa0983530 | 0.844055 | 9.579879e-59 | -8.615850e-47 |
| Msa0709160 | Msa0983530 | -0.811685 | 6.187755e-51 | -8.615850e-47 |
| Msa0716960 | Msa0983530 | -0.805743 | 1.151976e-49 | -8.615850e-47 |
| Msa0717010 | Msa0983530 | -0.807307 | 5.388430e-50 | -8.615850e-47 |
| Msa0721280 | Msa0983530 | -0.816599 | 5.088892e-52 | -8.615850e-47 |
| Msa0763890 | Msa0983530 | -0.818737 | 1.676736e-52 | -8.615850e-47 |
| Msa0763920 | Msa0983530 | -0.806641 | 7.453333e-50 | -8.615850e-47 |
| Msa0771720 | Msa0983530 | -0.805148 | 1.535034e-49 | -8.615850e-47 |
| Msa0790660 | Msa0983530 | 0.820421 | 6.921110e-53 | -8.615850e-47 |
| Msa0794730 | Msa0983530 | -0.805975 | 1.029776e-49 | -8.615850e-47 |
| Msa0817460 | Msa0983530 | -0.818858 | 1.573914e-52 | -8.615850e-47 |
| Msa0820850 | Msa0983530 | -0.811479 | 6.860113e-51 | -8.615850e-47 |
| Msa0828920 | Msa0983530 | -0.801681 | 8.027535e-49 | -8.615850e-47 |
| Msa0831850 | Msa0983530 | -0.800531 | 1.379512e-48 | -8.615850e-47 |
| Msa0127800 | Msa0983530 | -0.824933 | 6.171583e-54 | -8.615850e-47 |
| Msa0138020 | Msa0983530 | -0.811399 | 7.137736e-51 | -8.615850e-47 |
| Msa0151180 | Msa0983530 | -0.808799 | 2.593541e-50 | -8.615850e-47 |
| Msa0159770 | Msa0983530 | -0.810787 | 9.687918e-51 | -8.615850e-47 |
| Msa0173070 | Msa0983530 | -0.802082 | 6.642293e-49 | -8.615850e-47 |
| Msa0175840 | Msa0983530 | -0.801486 | 8.803694e-49 | -8.615850e-47 |
| Msa0206010 | Msa0983530 | -0.810437 | 1.153195e-50 | -8.615850e-47 |
| Msa0212930 | Msa0983530 | -0.813909 | 2.015555e-51 | -8.615850e-47 |
| Msa0220440 | Msa0983530 | -0.823874 | 1.095080e-53 | -8.615850e-47 |
| Msa0229380 | Msa0983530 | -0.811941 | 5.440862e-51 | -8.615850e-47 |
| Msa0376910 | Msa0983530 | -0.816942 | 4.262273e-52 | -8.615850e-47 |
| Msa0412840 | Msa0983530 | -0.819519 | 1.112939e-52 | -8.615850e-47 |
| Msa0433360 | Msa0983530 | -0.801012 | 1.100345e-48 | -8.615850e-47 |
| Msa0433410 | Msa0983530 | 0.803500 | 3.384596e-49 | -8.615850e-47 |
| Msa0471900 | Msa0983530 | -0.822126 | 2.798964e-53 | -8.615850e-47 |
| Msa0477130 | Msa0983530 | 0.820862 | 5.481649e-53 | -8.615850e-47 |
| Msa0481280 | Msa0983530 | -0.802473 | 5.516734e-49 | -8.615850e-47 |
| Msa0983170 | Msa0983530 | 0.882345 | 1.126156e-70 | -8.615850e-47 |
| Msa0983180 | Msa0983530 | 0.989906 | 3.520689e-180 | -8.615850e-47 |
| Msa0983190 | Msa0983530 | 0.887574 | 1.266319e-72 | -8.615850e-47 |
| Msa0983210 | Msa0983530 | 0.859971 | 2.859216e-63 | -8.615850e-47 |
| Msa0983220 | Msa0983530 | 0.835145 | 1.989606e-56 | -8.615850e-47 |
| Msa0983260 | Msa0983530 | 0.872610 | 2.785276e-67 | -8.615850e-47 |
| Msa0983300 | Msa0983530 | 0.852242 | 5.250354e-61 | -8.615850e-47 |
| Msa0983320 | Msa0983530 | 0.879511 | 1.174442e-69 | -8.615850e-47 |
| Msa0983350 | Msa0983530 | 0.853830 | 1.843210e-61 | -8.615850e-47 |
| Msa0983460 | Msa0983530 | 0.868577 | 5.887740e-66 | -8.615850e-47 |
| Msa0983490 | Msa0983530 | 0.845520 | 3.859229e-59 | -8.615850e-47 |
| Msa0983500 | Msa0983530 | 0.876611 | 1.217081e-68 | -8.615850e-47 |
| Msa0983520 | Msa0983530 | 0.886773 | 2.554621e-72 | -8.615850e-47 |
| Msa0983530 | Msa0983540 | 0.887046 | 2.011884e-72 | -8.615850e-47 |
| Msa0983530 | Msa0983550 | 0.805180 | 1.512075e-49 | -8.615850e-47 |
| Msa0983530 | Msa0994370 | -0.823922 | 1.066888e-53 | -8.615850e-47 |
| Msa0983530 | Msa1023920 | -0.806074 | 9.813220e-50 | -8.615850e-47 |
| Msa0983530 | Msa1034150 | -0.816960 | 4.223919e-52 | -8.615850e-47 |
| Msa0983530 | Msa1063420 | -0.808102 | 3.651864e-50 | -8.615850e-47 |
| Msa0983530 | Msa1063510 | -0.803265 | 3.785205e-49 | -8.615850e-47 |
| Msa0983530 | Msa1082500 | -0.802837 | 4.641369e-49 | -8.615850e-47 |
| Msa0983530 | Msa1107900 | -0.808028 | 3.787866e-50 | -8.615850e-47 |
| Msa0983530 | Msa1109680 | -0.809935 | 1.479572e-50 | -8.615850e-47 |
| Msa0983530 | Msa1123470 | -0.801795 | 7.606234e-49 | -8.615850e-47 |
| Msa0983530 | Msa1129550 | -0.803179 | 3.944823e-49 | -8.615850e-47 |
| Msa0983530 | Msa1135470 | -0.803424 | 3.508890e-49 | -8.615850e-47 |
| Msa0983530 | Msa1144040 | -0.807844 | 4.144887e-50 | -8.615850e-47 |
| Msa0983530 | Msa1174040 | -0.817399 | 3.364159e-52 | -8.615850e-47 |
| Msa0983530 | Msa1181250 | -0.804443 | 2.154926e-49 | -8.615850e-47 |
| Msa0983530 | Msa1183100 | 0.804038 | 2.617225e-49 | -8.615850e-47 |
| Msa0983530 | Msa1186360 | -0.803997 | 2.668922e-49 | -8.615850e-47 |
| Msa0983530 | Msa1193290 | -0.816970 | 4.202721e-52 | -8.615850e-47 |
| Msa0983530 | Msa1201560 | -0.803675 | 3.112640e-49 | -8.615850e-47 |
| Msa0983530 | Msa1210020 | -0.814438 | 1.540636e-51 | -8.615850e-47 |
| Msa0983530 | Msa1211140 | 0.806298 | 8.802484e-50 | -8.615850e-47 |
| Msa0983530 | Msa1217470 | -0.803089 | 4.116491e-49 | -8.615850e-47 |
| Msa0983530 | Msa1228620 | 0.868238 | 7.572724e-66 | -8.615850e-47 |
| Msa0983530 | Msa1253020 | -0.804273 | 2.338048e-49 | -8.615850e-47 |
| Msa0983530 | Msa1254730 | -0.805223 | 1.480730e-49 | -8.615850e-47 |
| Msa0983530 | Msa1259590 | 0.805136 | 1.544263e-49 | -8.615850e-47 |
| Msa0983530 | Msa1263290 | 0.801427 | 9.051911e-49 | -8.615850e-47 |
| Msa0983530 | Msa1270660 | -0.812435 | 4.246541e-51 | -8.615850e-47 |
| Msa0983530 | Msa1270730 | -0.827037 | 1.952016e-54 | -8.615850e-47 |
| Msa0983530 | Msa1276440 | -0.822610 | 2.160312e-53 | -8.615850e-47 |
| Msa0983530 | Msa1294820 | -0.814020 | 1.905489e-51 | -8.615850e-47 |
| Msa0983530 | Msa1298510 | -0.818552 | 1.846968e-52 | -8.615850e-47 |
| Msa0983530 | Msa1305340 | -0.803787 | 2.950333e-49 | -8.615850e-47 |
| Msa0983530 | Msa1305710 | -0.813496 | 2.484916e-51 | -8.615850e-47 |
| Msa0983530 | Msa1331000 | -0.804879 | 1.747645e-49 | -8.615850e-47 |
| Msa0983530 | Msa1331320 | -0.807882 | 4.068911e-50 | -8.615850e-47 |
| Msa0983530 | Msa1357890 | -0.819970 | 8.781768e-53 | -8.615850e-47 |
| Msa0983530 | Msa1359040 | -0.802434 | 5.621308e-49 | -8.615850e-47 |
| Msa0983530 | Msa1370070 | 0.816202 | 6.245722e-52 | -8.615850e-47 |
| Msa0983530 | Msa1374470 | -0.802909 | 4.484955e-49 | -8.615850e-47 |
| Msa0983530 | Msa1391970 | 0.853898 | 1.762377e-61 | -8.615850e-47 |
| Msa0983530 | Msa1392010 | 0.880115 | 7.159644e-70 | -8.615850e-47 |
| Msa0983530 | Msa1392030 | 0.849574 | 2.962996e-60 | -8.615850e-47 |
| Msa0983530 | Msa1392120 | 0.864174 | 1.469962e-64 | -8.615850e-47 |
| Msa0983530 | Msa1392160 | 0.873060 | 1.968986e-67 | -8.615850e-47 |
| Msa0983530 | Msa1397120 | -0.811307 | 7.474702e-51 | -8.615850e-47 |
| Msa0983530 | Msa1398090 | -0.813739 | 2.197116e-51 | -8.615850e-47 |
| Msa0983530 | Msa1403890 | -0.809030 | 2.313907e-50 | -8.615850e-47 |
| Msa0983530 | Msa1407600 | -0.831037 | 2.094396e-55 | -8.615850e-47 |
| Msa0983530 | Msa1417200 | -0.803181 | 3.939776e-49 | -8.615850e-47 |
| Msa0983530 | Msa1434420 | 0.812637 | 3.834696e-51 | -8.615850e-47 |
| Msa0983530 | Msa1462290 | -0.803432 | 3.496261e-49 | -8.615850e-47 |
| Msa0983530 | Msa1466540 | -0.829287 | 5.600640e-55 | -8.615850e-47 |
| Msa0253200 | Msa0983530 | -0.830373 | 3.045571e-55 | -8.615850e-47 |
| Msa0261720 | Msa0983530 | -0.828454 | 8.910067e-55 | -8.615850e-47 |
| Msa0271530 | Msa0983530 | -0.813623 | 2.330539e-51 | -8.615850e-47 |
| Msa0287410 | Msa0983530 | -0.831967 | 1.235851e-55 | -8.615850e-47 |
| Msa0292030 | Msa0983530 | -0.828744 | 7.584546e-55 | -8.615850e-47 |
| Msa0319170 | Msa0983530 | -0.836741 | 7.834590e-57 | -8.615850e-47 |
| Msa0326110 | Msa0983530 | -0.825129 | 5.547003e-54 | -8.615850e-47 |
| Msa0336320 | Msa0983530 | -0.802174 | 6.357341e-49 | -8.615850e-47 |
| Msa0337060 | Msa0983530 | -0.817199 | 3.732425e-52 | -8.615850e-47 |
| Msa0344910 | Msa0983530 | -0.801223 | 9.964725e-49 | -8.615850e-47 |
| Msa0344980 | Msa0983530 | -0.801420 | 9.081813e-49 | -8.615850e-47 |
| Msa0484780 | Msa0983530 | -0.808946 | 2.412346e-50 | -8.615850e-47 |
| Msa0485490 | Msa0983530 | -0.802528 | 5.376736e-49 | -8.615850e-47 |
| Msa0512750 | Msa0983530 | -0.807353 | 5.268257e-50 | -8.615850e-47 |
| Msa0518380 | Msa0983530 | -0.820745 | 5.832380e-53 | -8.615850e-47 |
| Msa0556060 | Msa0983530 | -0.802923 | 4.455491e-49 | -8.615850e-47 |
| Msa0842650 | Msa0983530 | -0.800746 | 1.247189e-48 | -8.615850e-47 |
| Msa0844110 | Msa0983530 | -0.800274 | 1.556164e-48 | -8.615850e-47 |
| Msa0849030 | Msa0983530 | -0.817967 | 2.504980e-52 | -8.615850e-47 |
| Msa0860030 | Msa0983530 | 0.813256 | 2.806737e-51 | -8.615850e-47 |
| Msa0861130 | Msa0983530 | -0.806966 | 6.363366e-50 | -8.615850e-47 |
| Msa0872440 | Msa0983530 | -0.809750 | 1.621728e-50 | -8.615850e-47 |
| Msa0876580 | Msa0983530 | -0.801930 | 7.136814e-49 | -8.615850e-47 |
| Msa0908830 | Msa0983530 | 0.877405 | 6.451614e-69 | -8.615850e-47 |
| Msa0908840 | Msa0983530 | 0.989212 | 3.662105e-177 | -8.615850e-47 |
| Msa0908850 | Msa0983530 | 0.877600 | 5.517807e-69 | -8.615850e-47 |
| Msa0908870 | Msa0983530 | 0.847743 | 9.534000e-60 | -8.615850e-47 |
| Msa0908920 | Msa0983530 | 0.867057 | 1.811475e-65 | -8.615850e-47 |
| Msa0908930 | Msa0983530 | 0.859524 | 3.898334e-63 | -8.615850e-47 |
| Msa0918390 | Msa0983530 | -0.801751 | 7.767211e-49 | -8.615850e-47 |
| Msa0920060 | Msa0983530 | 0.823630 | 1.248948e-53 | -8.615850e-47 |
| Msa0933100 | Msa0983530 | -0.831589 | 1.532602e-55 | -8.615850e-47 |
| Msa0944900 | Msa0983530 | 0.883330 | 4.914800e-71 | -8.615850e-47 |
| Msa0944920 | Msa0983530 | 0.893908 | 4.054694e-75 | -8.615850e-47 |
| Msa0944930 | Msa0983530 | 0.997364 | 3.134859e-241 | -8.615850e-47 |
| Msa0944940 | Msa0983530 | 0.877861 | 4.473106e-69 | -8.615850e-47 |
| Msa0944990 | Msa0983530 | 0.875475 | 2.991649e-68 | -8.615850e-47 |
| Msa0969520 | Msa0983530 | -0.808248 | 3.399847e-50 | -8.615850e-47 |
| Msa0970990 | Msa0983530 | -0.804485 | 2.112203e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAAGAAAGTAGGTTTC+GGG | 0.299621 | 6_4:-26627572 | Msa0983530:intron |
| TGCGCGAGTCACCTTCTTCT+AGG | 0.325482 | 6_4:-26627395 | Msa0983530:CDS |
| ACCAGCCAGCTGGGTTGGTT+TGG | 0.332153 | 6_4:-26627454 | Msa0983530:CDS |
| CGCAATGGCTTTCTCTGATA+GGG | 0.371132 | 6_4:-26627860 | None:intergenic |
| ATTCCTTTCTATTGAAAAGA+AGG | 0.387353 | 6_4:-26627429 | Msa0983530:CDS |
| GCGCAATGGCTTTCTCTGAT+AGG | 0.391358 | 6_4:-26627861 | None:intergenic |
| GTCGTCCGTCTCAGGTTTGC+CGG | 0.398406 | 6_4:-26627498 | Msa0983530:CDS |
| GGACCGTGGTCGTCCGTCTC+AGG | 0.441663 | 6_4:-26627506 | Msa0983530:CDS |
| AGCAGCACCTTGTATAGGTT+GGG | 0.447543 | 6_4:+26627817 | None:intergenic |
| GTACACCTCCGGTGCTGATA+AGG | 0.450222 | 6_4:-26627532 | Msa0983530:CDS |
| GATTGACCAGCCAGCTGGGT+TGG | 0.459599 | 6_4:-26627459 | Msa0983530:CDS |
| GTCAATCTCAGAGATCTTAT+CGG | 0.462954 | 6_4:+26627475 | None:intergenic |
| AAGCGAGCAGCACCTTGTAT+AGG | 0.473472 | 6_4:+26627812 | None:intergenic |
| TCTGAGATTGACCAGCCAGC+TGG | 0.486873 | 6_4:-26627464 | Msa0983530:CDS |
| TTCATTGATTAGTACACCTC+CGG | 0.492064 | 6_4:-26627543 | Msa0983530:CDS |
| CGCTTTCTCTCAGCCACCAG+TGG | 0.505851 | 6_4:-26627794 | Msa0983530:CDS |
| CTGAGATTGACCAGCCAGCT+GGG | 0.514570 | 6_4:-26627463 | Msa0983530:CDS |
| CACCTTCTTCTAGGCTCCGC+TGG | 0.516734 | 6_4:-26627386 | Msa0983530:CDS |
| GCCAAACCAACCCAGCTGGC+TGG | 0.523772 | 6_4:+26627453 | None:intergenic |
| GAGCAGCACCTTGTATAGGT+TGG | 0.534433 | 6_4:+26627816 | None:intergenic |
| ATCTCAGAGATCTTATCGGC+CGG | 0.550066 | 6_4:+26627479 | None:intergenic |
| AATAGCCAAACCAACCCAGC+TGG | 0.553661 | 6_4:+26627449 | None:intergenic |
| CCTCCGGTGCTGATAAGGTC+GGG | 0.561319 | 6_4:-26627527 | Msa0983530:CDS |
| ATCGGCCGGCAAACCTGAGA+CGG | 0.579939 | 6_4:+26627493 | None:intergenic |
| GCCACCAGTGGCTTATGTAG+TGG | 0.581920 | 6_4:-26627782 | Msa0983530:intron |
| TGCTGATAAGGTCGGGACCG+TGG | 0.590314 | 6_4:-26627520 | Msa0983530:CDS |
| GTCCAGCGGAGCCTAGAAGA+AGG | 0.604022 | 6_4:+26627384 | None:intergenic |
| CTAGGCTCCGCTGGACGACA+CGG | 0.612977 | 6_4:-26627377 | Msa0983530:CDS |
| GAGAATGCCGTGTCGTCCAG+CGG | 0.617479 | 6_4:+26627370 | None:intergenic |
| CCCGACCTTATCAGCACCGG+AGG | 0.624401 | 6_4:+26627527 | None:intergenic |
| AGCACCTTGTATAGGTTGGG+CGG | 0.628644 | 6_4:+26627820 | None:intergenic |
| AGCTCCGCCCAACCTATACA+AGG | 0.631063 | 6_4:-26627824 | Msa0983530:CDS |
| CCGACCACTACATAAGCCAC+TGG | 0.631161 | 6_4:+26627778 | None:intergenic |
| ACCTCCGGTGCTGATAAGGT+CGG | 0.637828 | 6_4:-26627528 | Msa0983530:CDS |
| GCAATGGCTTTCTCTGATAG+GGG | 0.641776 | 6_4:-26627859 | Msa0983530:CDS |
| GGTCCCGACCTTATCAGCAC+CGG | 0.654281 | 6_4:+26627524 | None:intergenic |
| AAACCTGAGACGGACGACCA+CGG | 0.659367 | 6_4:+26627503 | None:intergenic |
| ACCACTACATAAGCCACTGG+TGG | 0.667213 | 6_4:+26627781 | None:intergenic |
| AGAAAAGAAAGTAGGTTTCG+GGG | 0.671452 | 6_4:-26627571 | Msa0983530:intron |
| GAAAAGAAAGTAGGTTTCGG+GGG | 0.676234 | 6_4:-26627570 | Msa0983530:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTTGTCAGAAAAGAAAGT+AGG | - | chr6_4:26627641-26627660 | Msa0983530:intron | 25.0% |
| ! | ATTCCTTTCTATTGAAAAGA+AGG | - | chr6_4:26627791-26627810 | Msa0983530:CDS | 25.0% |
| TCAGAAAAGAAAGTAGGTTT+CGG | - | chr6_4:26627647-26627666 | Msa0983530:intron | 30.0% | |
| ! | ACTCCTTCTTTTCAATAGAA+AGG | + | chr6_4:26627797-26627816 | None:intergenic | 30.0% |
| ACCTTTGGATTCTTAAGTAG+GGG | + | chr6_4:26627491-26627510 | None:intergenic | 35.0% | |
| GACCTTTGGATTCTTAAGTA+GGG | + | chr6_4:26627492-26627511 | None:intergenic | 35.0% | |
| TGACCTTTGGATTCTTAAGT+AGG | + | chr6_4:26627493-26627512 | None:intergenic | 35.0% | |
| GTTGTTGTGATTGAGTTTGA+GGG | + | chr6_4:26627595-26627614 | None:intergenic | 35.0% | |
| TGTTGTTGTGATTGAGTTTG+AGG | + | chr6_4:26627596-26627615 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGTAGGTTTC+GGG | - | chr6_4:26627648-26627667 | Msa0983530:intron | 35.0% | |
| AGAAAAGAAAGTAGGTTTCG+GGG | - | chr6_4:26627649-26627668 | Msa0983530:intron | 35.0% | |
| ! | TTCATTGATTAGTACACCTC+CGG | - | chr6_4:26627677-26627696 | Msa0983530:intron | 35.0% |
| GTCAATCTCAGAGATCTTAT+CGG | + | chr6_4:26627748-26627767 | None:intergenic | 35.0% | |
| CCTTTGGATTCTTAAGTAGG+GGG | + | chr6_4:26627490-26627509 | None:intergenic | 40.0% | |
| AAGAATCCAAAGGTCACCTT+TGG | - | chr6_4:26627497-26627516 | Msa0983530:CDS | 40.0% | |
| GAAAAGAAAGTAGGTTTCGG+GGG | - | chr6_4:26627650-26627669 | Msa0983530:intron | 40.0% | |
| AGCAGCACCTTGTATAGGTT+GGG | + | chr6_4:26627406-26627425 | None:intergenic | 45.0% | |
| TTCTTAAGTAGGGGGCAAAG+AGG | + | chr6_4:26627482-26627501 | None:intergenic | 45.0% | |
| CCCCCTACTTAAGAATCCAA+AGG | - | chr6_4:26627487-26627506 | Msa0983530:CDS | 45.0% | |
| GCTTTGGTTACGAAAGTAGC+CGG | - | chr6_4:26627533-26627552 | Msa0983530:CDS | 45.0% | |
| CTTTGGTTACGAAAGTAGCC+GGG | - | chr6_4:26627534-26627553 | Msa0983530:CDS | 45.0% | |
| TTTGGTTACGAAAGTAGCCG+GGG | - | chr6_4:26627535-26627554 | Msa0983530:CDS | 45.0% | |
| TCACAACAACATGTCGTGAC+CGG | - | chr6_4:26627605-26627624 | Msa0983530:intron | 45.0% | |
| CAAAATCCACCAAGCCTAAC+CGG | + | chr6_4:26627627-26627646 | None:intergenic | 45.0% | |
| ATCTCAGAGATCTTATCGGC+CGG | + | chr6_4:26627744-26627763 | None:intergenic | 45.0% | |
| ! | AGCACCTTGTATAGGTTGGG+CGG | + | chr6_4:26627403-26627422 | None:intergenic | 50.0% |
| GAGCAGCACCTTGTATAGGT+TGG | + | chr6_4:26627407-26627426 | None:intergenic | 50.0% | |
| AAGCGAGCAGCACCTTGTAT+AGG | + | chr6_4:26627411-26627430 | None:intergenic | 50.0% | |
| ACCACTACATAAGCCACTGG+TGG | + | chr6_4:26627442-26627461 | None:intergenic | 50.0% | |
| CCAGTGGCTTATGTAGTGGT+CGG | - | chr6_4:26627442-26627461 | Msa0983530:CDS | 50.0% | |
| CAACAGCCAAAGGTGACCTT+TGG | + | chr6_4:26627506-26627525 | None:intergenic | 50.0% | |
| AGCGTCAAGACAACAGCCAA+AGG | + | chr6_4:26627516-26627535 | None:intergenic | 50.0% | |
| TGGCTGTTGTCTTGACGCTT+TGG | - | chr6_4:26627517-26627536 | Msa0983530:CDS | 50.0% | |
| CCATCCATAAACCTAGACCC+CGG | + | chr6_4:26627555-26627574 | None:intergenic | 50.0% | |
| ACAACATGTCGTGACCGGTT+AGG | - | chr6_4:26627610-26627629 | Msa0983530:intron | 50.0% | |
| AAGAAAGTAGGTTTCGGGGG+TGG | - | chr6_4:26627653-26627672 | Msa0983530:intron | 50.0% | |
| AGAAAGTAGGTTTCGGGGGT+GGG | - | chr6_4:26627654-26627673 | Msa0983530:intron | 50.0% | |
| AATAGCCAAACCAACCCAGC+TGG | + | chr6_4:26627774-26627793 | None:intergenic | 50.0% | |
| AGCTCCGCCCAACCTATACA+AGG | - | chr6_4:26627396-26627415 | Msa0983530:CDS | 55.0% | |
| GCCACCAGTGGCTTATGTAG+TGG | - | chr6_4:26627438-26627457 | Msa0983530:CDS | 55.0% | |
| CCGACCACTACATAAGCCAC+TGG | + | chr6_4:26627445-26627464 | None:intergenic | 55.0% | |
| TACGAAAGTAGCCGGGGTCT+AGG | - | chr6_4:26627541-26627560 | Msa0983530:CDS | 55.0% | |
| GTAGCCGGGGTCTAGGTTTA+TGG | - | chr6_4:26627548-26627567 | Msa0983530:CDS | 55.0% | |
| CCGGGGTCTAGGTTTATGGA+TGG | - | chr6_4:26627552-26627571 | Msa0983530:CDS | 55.0% | |
| ATGTCGTGACCGGTTAGGCT+TGG | - | chr6_4:26627615-26627634 | Msa0983530:intron | 55.0% | |
| !! | GTACACCTCCGGTGCTGATA+AGG | - | chr6_4:26627688-26627707 | Msa0983530:intron | 55.0% |
| !! | ACCTCCGGTGCTGATAAGGT+CGG | - | chr6_4:26627692-26627711 | Msa0983530:intron | 55.0% |
| AAACCTGAGACGGACGACCA+CGG | + | chr6_4:26627720-26627739 | None:intergenic | 55.0% | |
| ! | TCTGAGATTGACCAGCCAGC+TGG | - | chr6_4:26627756-26627775 | Msa0983530:intron | 55.0% |
| CTGAGATTGACCAGCCAGCT+GGG | - | chr6_4:26627757-26627776 | Msa0983530:intron | 55.0% | |
| TGCGCGAGTCACCTTCTTCT+AGG | - | chr6_4:26627825-26627844 | Msa0983530:CDS | 55.0% | |
| CGCTTTCTCTCAGCCACCAG+TGG | - | chr6_4:26627426-26627445 | Msa0983530:CDS | 60.0% | |
| TCGTGACCGGTTAGGCTTGG+TGG | - | chr6_4:26627618-26627637 | Msa0983530:intron | 60.0% | |
| !! | CCTCCGGTGCTGATAAGGTC+GGG | - | chr6_4:26627693-26627712 | Msa0983530:intron | 60.0% |
| GGTCCCGACCTTATCAGCAC+CGG | + | chr6_4:26627699-26627718 | None:intergenic | 60.0% | |
| TGCTGATAAGGTCGGGACCG+TGG | - | chr6_4:26627700-26627719 | Msa0983530:intron | 60.0% | |
| GTCGTCCGTCTCAGGTTTGC+CGG | - | chr6_4:26627722-26627741 | Msa0983530:intron | 60.0% | |
| ATCGGCCGGCAAACCTGAGA+CGG | + | chr6_4:26627730-26627749 | None:intergenic | 60.0% | |
| GATTGACCAGCCAGCTGGGT+TGG | - | chr6_4:26627761-26627780 | Msa0983530:intron | 60.0% | |
| !! | ACCAGCCAGCTGGGTTGGTT+TGG | - | chr6_4:26627766-26627785 | Msa0983530:intron | 60.0% |
| CACCTTCTTCTAGGCTCCGC+TGG | - | chr6_4:26627834-26627853 | Msa0983530:CDS | 60.0% | |
| GTCCAGCGGAGCCTAGAAGA+AGG | + | chr6_4:26627839-26627858 | None:intergenic | 60.0% | |
| GAGAATGCCGTGTCGTCCAG+CGG | + | chr6_4:26627853-26627872 | None:intergenic | 60.0% | |
| ! | GGGGGCAAAGAGGAGCACGT+AGG | + | chr6_4:26627472-26627491 | None:intergenic | 65.0% |
| ! | CCCGACCTTATCAGCACCGG+AGG | + | chr6_4:26627696-26627715 | None:intergenic | 65.0% |
| GCCAAACCAACCCAGCTGGC+TGG | + | chr6_4:26627770-26627789 | None:intergenic | 65.0% | |
| CTAGGCTCCGCTGGACGACA+CGG | - | chr6_4:26627843-26627862 | Msa0983530:CDS | 65.0% | |
| GGACCGTGGTCGTCCGTCTC+AGG | - | chr6_4:26627714-26627733 | Msa0983530:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 26627364 | 26627878 | 26627364 | ID=Msa0983530;Name=Msa0983530 |
| chr6_4 | mRNA | 26627364 | 26627878 | 26627364 | ID=Msa0983530-mRNA-1;Parent=Msa0983530;Name=Msa0983530-mRNA-1;_AED=0.27;_eAED=0.30;_QI=0|0|0|1|0|0|2|0|103 |
| chr6_4 | exon | 26627783 | 26627878 | 26627783 | ID=Msa0983530-mRNA-1:exon:7553;Parent=Msa0983530-mRNA-1 |
| chr6_4 | exon | 26627364 | 26627579 | 26627364 | ID=Msa0983530-mRNA-1:exon:7552;Parent=Msa0983530-mRNA-1 |
| chr6_4 | CDS | 26627783 | 26627878 | 26627783 | ID=Msa0983530-mRNA-1:cds;Parent=Msa0983530-mRNA-1 |
| chr6_4 | CDS | 26627364 | 26627579 | 26627364 | ID=Msa0983530-mRNA-1:cds;Parent=Msa0983530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
