Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989450 | PNX92077.1 | 61.342 | 313 | 110 | 4 | 13 | 319 | 17 | 324 | 9.91e-138 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989450 | A0A2K3MMN7 | 61.342 | 313 | 110 | 4 | 13 | 319 | 17 | 324 | 4.73e-138 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0989450 | 0.825580 | 4.338193e-54 | -8.615850e-47 |
| Msa0036920 | Msa0989450 | 0.800063 | 1.717753e-48 | -8.615850e-47 |
| Msa0101810 | Msa0989450 | -0.810624 | 1.051008e-50 | -8.615850e-47 |
| Msa0102880 | Msa0989450 | 0.968866 | 2.734369e-129 | -8.615850e-47 |
| Msa0657970 | Msa0989450 | 0.801928 | 7.143018e-49 | -8.615850e-47 |
| Msa0669320 | Msa0989450 | 0.817517 | 3.165151e-52 | -8.615850e-47 |
| Msa0701340 | Msa0989450 | 0.987095 | 4.865805e-169 | -8.615850e-47 |
| Msa0745790 | Msa0989450 | 0.803033 | 4.227415e-49 | -8.615850e-47 |
| Msa0753720 | Msa0989450 | 0.822758 | 1.995512e-53 | -8.615850e-47 |
| Msa0825340 | Msa0989450 | 0.802530 | 5.370158e-49 | -8.615850e-47 |
| Msa0140780 | Msa0989450 | 0.802176 | 6.353292e-49 | -8.615850e-47 |
| Msa0157290 | Msa0989450 | 0.825764 | 3.923703e-54 | -8.615850e-47 |
| Msa0388960 | Msa0989450 | 0.800244 | 1.578700e-48 | -8.615850e-47 |
| Msa0402290 | Msa0989450 | 0.802557 | 5.301449e-49 | -8.615850e-47 |
| Msa0440750 | Msa0989450 | 0.816661 | 4.929229e-52 | -8.615850e-47 |
| Msa0467060 | Msa0989450 | 0.804738 | 1.870562e-49 | -8.615850e-47 |
| Msa0986900 | Msa0989450 | 0.963621 | 2.607060e-122 | -8.615850e-47 |
| Msa0989450 | Msa1045200 | 0.828211 | 1.019607e-54 | -8.615850e-47 |
| Msa0989450 | Msa1075220 | -0.804124 | 2.510914e-49 | -8.615850e-47 |
| Msa0989450 | Msa1137570 | 0.813346 | 2.681867e-51 | -8.615850e-47 |
| Msa0989450 | Msa1151910 | 0.806970 | 6.349947e-50 | -8.615850e-47 |
| Msa0989450 | Msa1162550 | -0.827604 | 1.426955e-54 | -8.615850e-47 |
| Msa0989450 | Msa1324500 | 0.803440 | 3.482609e-49 | -8.615850e-47 |
| Msa0989450 | Msa1327050 | 0.813089 | 3.053926e-51 | -8.615850e-47 |
| Msa0989450 | Msa1353470 | 0.813041 | 3.128661e-51 | -8.615850e-47 |
| Msa0257460 | Msa0989450 | 0.822301 | 2.548935e-53 | -8.615850e-47 |
| Msa0287650 | Msa0989450 | 0.805151 | 1.532974e-49 | -8.615850e-47 |
| Msa0336040 | Msa0989450 | -0.812910 | 3.342604e-51 | -8.615850e-47 |
| Msa0345970 | Msa0989450 | 0.819214 | 1.306439e-52 | -8.615850e-47 |
| Msa0585300 | Msa0989450 | 0.804284 | 2.325374e-49 | -8.615850e-47 |
| Msa0880140 | Msa0989450 | 0.826258 | 2.993453e-54 | -8.615850e-47 |
| Msa0942200 | Msa0989450 | 0.800476 | 1.415994e-48 | -8.615850e-47 |
| Msa0954130 | Msa0989450 | 0.802471 | 5.524062e-49 | -8.615850e-47 |
| Msa0969520 | Msa0989450 | 0.805059 | 1.602655e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989450 | MtrunA17_Chr3g0145811 | 63.052 | 249 | 92 | 0 | 8 | 256 | 10 | 258 | 2.54e-121 | 351 |
| Msa0989450 | MtrunA17_Chr1g0163881 | 60.484 | 248 | 96 | 1 | 46 | 291 | 1 | 248 | 6.79e-110 | 324 |
| Msa0989450 | MtrunA17_Chr3g0083121 | 51.178 | 297 | 134 | 4 | 1 | 287 | 1 | 296 | 1.12e-109 | 328 |
| Msa0989450 | MtrunA17_Chr6g0474221 | 47.706 | 327 | 151 | 5 | 1 | 311 | 1 | 323 | 8.89e-109 | 323 |
| Msa0989450 | MtrunA17_Chr2g0302521 | 42.442 | 344 | 182 | 5 | 15 | 356 | 28 | 357 | 1.66e-93 | 284 |
| Msa0989450 | MtrunA17_Chr7g0264751 | 36.486 | 296 | 169 | 5 | 17 | 303 | 35 | 320 | 9.64e-63 | 207 |
| Msa0989450 | MtrunA17_Chr1g0172701 | 31.329 | 316 | 208 | 5 | 4 | 317 | 30 | 338 | 1.76e-50 | 172 |
| Msa0989450 | MtrunA17_Chr6g0468481 | 47.024 | 168 | 68 | 1 | 66 | 233 | 4 | 150 | 1.29e-46 | 157 |
| Msa0989450 | MtrunA17_Chr1g0179951 | 29.965 | 287 | 195 | 5 | 2 | 287 | 12 | 293 | 4.34e-46 | 162 |
| Msa0989450 | MtrunA17_Chr8g0334511 | 40.764 | 157 | 90 | 1 | 148 | 301 | 1 | 157 | 3.83e-34 | 132 |
| Msa0989450 | MtrunA17_Chr8g0343501 | 56.311 | 103 | 43 | 2 | 12 | 113 | 72 | 173 | 1.72e-33 | 122 |
| Msa0989450 | MtrunA17_Chr4g0071691 | 35.762 | 151 | 95 | 2 | 76 | 225 | 4 | 153 | 1.06e-29 | 113 |
| Msa0989450 | MtrunA17_Chr4g0004391 | 29.278 | 263 | 166 | 7 | 34 | 287 | 45 | 296 | 1.02e-28 | 114 |
| Msa0989450 | MtrunA17_Chr7g0219261 | 25.263 | 285 | 187 | 7 | 33 | 314 | 37 | 298 | 2.37e-28 | 112 |
| Msa0989450 | MtrunA17_Chr2g0326501 | 25.263 | 285 | 187 | 7 | 33 | 314 | 37 | 298 | 2.37e-28 | 112 |
| Msa0989450 | MtrunA17_Chr2g0305411 | 52.632 | 76 | 34 | 1 | 233 | 306 | 28 | 103 | 3.97e-20 | 85.5 |
| Msa0989450 | MtrunA17_Chr3g0134961 | 26.486 | 185 | 115 | 4 | 57 | 232 | 3 | 175 | 1.45e-16 | 78.2 |
| Msa0989450 | MtrunA17_Chr2g0314851 | 44.444 | 72 | 40 | 0 | 46 | 117 | 1 | 72 | 2.98e-16 | 72.8 |
| Msa0989450 | MtrunA17_Chr3g0135421 | 25.604 | 207 | 138 | 3 | 78 | 280 | 2 | 196 | 5.54e-16 | 77.4 |
| Msa0989450 | MtrunA17_Chr1g0208691 | 25.000 | 264 | 185 | 6 | 33 | 296 | 12 | 262 | 1.11e-14 | 75.9 |
| Msa0989450 | MtrunA17_Chr1g0208701 | 25.000 | 264 | 185 | 6 | 33 | 296 | 12 | 262 | 1.13e-14 | 75.9 |
| Msa0989450 | MtrunA17_Chr6g0468811 | 25.101 | 247 | 163 | 4 | 76 | 307 | 462 | 701 | 5.38e-14 | 73.6 |
| Msa0989450 | MtrunA17_Chr2g0324561 | 31.008 | 129 | 72 | 3 | 188 | 299 | 1 | 129 | 2.88e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989450 | AT1G21280.1 | 34.529 | 223 | 135 | 4 | 11 | 226 | 12 | 230 | 1.72e-43 | 151 |
Find 127 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACGCCCCTGAGACTTTC+TGG | 0.159005 | 6_4:+46393003 | None:intergenic |
| AAATTAGAATGACATATAAT+TGG | 0.218390 | 6_4:+46389019 | None:intergenic |
| GGTAAAACAACAACGAAATT+TGG | 0.220538 | 6_4:+46393676 | None:intergenic |
| CTTACTGCTATTGATTAAAA+AGG | 0.221655 | 6_4:+46390227 | None:intergenic |
| TTCTTGTTCATAATCCTTCA+TGG | 0.235483 | 6_4:+46390839 | None:intergenic |
| CGTTCTATGCAACGCGCTTT+AGG | 0.239157 | 6_4:-46393619 | Msa0989450:CDS |
| TGTCATTCTTTATTTCTAAA+AGG | 0.243177 | 6_4:-46390614 | Msa0989450:three_prime_UTR |
| TCATCATGTAAGCCCTCTTT+TGG | 0.256450 | 6_4:+46389562 | None:intergenic |
| CTTTCATGACACTGCCTTTG+AGG | 0.258488 | 6_4:-46393449 | Msa0989450:CDS |
| AATATTTCTACTGGTGTATC+TGG | 0.268869 | 6_4:-46392830 | Msa0989450:intron |
| TAGAGCCAACAAATTGTAAT+TGG | 0.277979 | 6_4:-46391047 | Msa0989450:three_prime_UTR |
| GAAAGTGTGGGAAAAGGTTT+TGG | 0.278030 | 6_4:+46392357 | None:intergenic |
| TTCTTCTGATAAAACAAAAT+TGG | 0.287134 | 6_4:+46390263 | None:intergenic |
| ATTAACTTCGATCTCATTCA+TGG | 0.296896 | 6_4:+46389516 | None:intergenic |
| TATACTGATTTAACATTAGT+TGG | 0.299041 | 6_4:+46392258 | None:intergenic |
| ATGGTTCTAACTATCTTTCA+TGG | 0.314692 | 6_4:-46393645 | Msa0989450:CDS |
| GCCGCCGCTCCTTCTCCTTC+TGG | 0.315411 | 6_4:+46389340 | None:intergenic |
| TGACACTGCCTTTGAGGTTT+GGG | 0.321758 | 6_4:-46393443 | Msa0989450:CDS |
| TGGAGTCAATGAATCTGTTT+TGG | 0.329578 | 6_4:+46389938 | None:intergenic |
| ATGACACTGCCTTTGAGGTT+TGG | 0.338163 | 6_4:-46393444 | Msa0989450:CDS |
| GCAATCACCTAGTTCATTCA+TGG | 0.343803 | 6_4:-46393513 | Msa0989450:CDS |
| GAGAGAAGCTTACTTGGATA+TGG | 0.347883 | 6_4:+46392171 | None:intergenic |
| TGATACTAATGGTAGCCTTT+TGG | 0.360814 | 6_4:+46389792 | None:intergenic |
| TCTTCAACCCTATAGGTCTT+AGG | 0.362092 | 6_4:+46393217 | None:intergenic |
| GCTTCGGTGATTCGCGGTGC+TGG | 0.381981 | 6_4:+46392571 | None:intergenic |
| ACAATAATCAACAGTATGAT+TGG | 0.383841 | 6_4:+46392931 | None:intergenic |
| TAAGATTGTTAGTGTTGTAA+TGG | 0.398843 | 6_4:-46389404 | Msa0989450:three_prime_UTR |
| CGGTTCAGATCATCTTGATC+AGG | 0.410003 | 6_4:+46393553 | None:intergenic |
| AACGAAATTTGGTCCTTCGC+TGG | 0.413383 | 6_4:+46393687 | None:intergenic |
| TGAAGTTACCTAAGACCTAT+AGG | 0.414817 | 6_4:-46393225 | Msa0989450:CDS |
| ACTATAGAAACAAAAGAGAT+TGG | 0.417735 | 6_4:+46391345 | None:intergenic |
| TGCAACGTTCCCATGCATTA+CGG | 0.419770 | 6_4:+46393533 | None:intergenic |
| CACAGAGATGAAGGCTTTGT+GGG | 0.421439 | 6_4:-46393314 | Msa0989450:CDS |
| GTTGCAGAAAGTACAATGTC+TGG | 0.422284 | 6_4:+46392958 | None:intergenic |
| GTAGATGTGGTGTGAGTTGA+AGG | 0.428182 | 6_4:-46389241 | Msa0989450:three_prime_UTR |
| CAGTGAGAAATTGAATAATC+TGG | 0.428848 | 6_4:+46393194 | None:intergenic |
| TGTTCTTATCCATGTGTTGA+AGG | 0.437532 | 6_4:-46391577 | Msa0989450:three_prime_UTR |
| AATGGAAATTGAAAACTATA+TGG | 0.441067 | 6_4:-46389386 | Msa0989450:three_prime_UTR |
| GGATTATTTCACAGAGATGA+AGG | 0.441172 | 6_4:-46393323 | Msa0989450:CDS |
| AATGCGAATTCTATCAACTT+TGG | 0.446875 | 6_4:+46393399 | None:intergenic |
| TCAAAATTCAAATTTAGAAG+AGG | 0.448349 | 6_4:+46392331 | None:intergenic |
| TGTTGTGATTCTTATGTTGA+AGG | 0.449563 | 6_4:-46391208 | Msa0989450:three_prime_UTR |
| GCAAGGTAACAAGTCTGTAT+TGG | 0.457564 | 6_4:-46393344 | Msa0989450:CDS |
| CTGCAGCTTTGCTTGACAAG+TGG | 0.460593 | 6_4:-46392418 | Msa0989450:intron |
| ACGAAATTTGGTCCTTCGCT+GGG | 0.462610 | 6_4:+46393688 | None:intergenic |
| ATACTGATTTAACATTAGTT+GGG | 0.464496 | 6_4:+46392259 | None:intergenic |
| TGCAGCTTTGCTTGACAAGT+GGG | 0.464834 | 6_4:-46392417 | Msa0989450:intron |
| TCACAGAGATGAAGGCTTTG+TGG | 0.467158 | 6_4:-46393315 | Msa0989450:CDS |
| AACAAGCTCTCCTTCATCAA+TGG | 0.467543 | 6_4:-46393589 | Msa0989450:CDS |
| AGATCATCTTGATCAGGTTC+AGG | 0.469040 | 6_4:+46393559 | None:intergenic |
| GAAGTTACCTAAGACCTATA+GGG | 0.470379 | 6_4:-46393224 | Msa0989450:CDS |
| ACATCACACTTGCAAGCAAA+AGG | 0.473838 | 6_4:+46393250 | None:intergenic |
| AAGTCTCAGGGGCGTGGTAA+AGG | 0.476720 | 6_4:-46392998 | Msa0989450:CDS |
| AGGGAAGAAAGTGTGGGAAA+AGG | 0.481179 | 6_4:+46392351 | None:intergenic |
| GATTATTGTTATCAAAAGCA+TGG | 0.483450 | 6_4:-46392917 | Msa0989450:CDS |
| TCTGAAGTCAATATTTCTAC+TGG | 0.484726 | 6_4:-46392839 | Msa0989450:CDS |
| CAGATTATTCAATTTCTCAC+TGG | 0.490120 | 6_4:-46393193 | Msa0989450:CDS |
| GCTCCTTCTCCTTCTGGTTG+CGG | 0.498102 | 6_4:+46389346 | None:intergenic |
| AGGAGAAGGAGCGGCGGCTA+TGG | 0.498537 | 6_4:-46389335 | Msa0989450:three_prime_UTR |
| GGACAATGACATGCAGGAAG+AGG | 0.503492 | 6_4:+46393271 | None:intergenic |
| GTGAAAGAAGTCCTGCGATT+TGG | 0.504851 | 6_4:-46389600 | Msa0989450:three_prime_UTR |
| TGTAATCTTTGATTTGCTGT+TGG | 0.505943 | 6_4:-46389639 | Msa0989450:three_prime_UTR |
| ATATGACATGATTTAGATCA+AGG | 0.507574 | 6_4:-46391146 | Msa0989450:three_prime_UTR |
| AGGTAAGGTTCCATTGATGA+AGG | 0.507592 | 6_4:+46393579 | None:intergenic |
| CTATAGAAACAAAAGAGATT+GGG | 0.515222 | 6_4:+46391346 | None:intergenic |
| TAATACTTCTGTACCTGCTA+TGG | 0.516289 | 6_4:-46393068 | Msa0989450:CDS |
| TAACAATCAGCATCAACAAT+CGG | 0.519177 | 6_4:-46393737 | Msa0989450:CDS |
| CAAAATTCAAATTTAGAAGA+GGG | 0.519269 | 6_4:+46392332 | None:intergenic |
| TTCTTTGTTCATCCCAGCGA+AGG | 0.519929 | 6_4:-46393700 | Msa0989450:CDS |
| ATTATTGTTATCAAAAGCAT+GGG | 0.521088 | 6_4:-46392916 | Msa0989450:CDS |
| TAGTTAGAACCATTGAACTT+TGG | 0.521096 | 6_4:+46393655 | None:intergenic |
| TCATTCATGGCTTATAAACT+CGG | 0.521397 | 6_4:-46393500 | Msa0989450:CDS |
| CTAATAGAAGAATTACCAAA+AGG | 0.524432 | 6_4:-46389807 | Msa0989450:three_prime_UTR |
| AATCTGGTCTTCAACCCTAT+AGG | 0.525729 | 6_4:+46393210 | None:intergenic |
| TCATCAAGAGTCACCATAGC+AGG | 0.530398 | 6_4:+46393055 | None:intergenic |
| CAAATCTTCCCAAACCTCAA+AGG | 0.533688 | 6_4:+46393435 | None:intergenic |
| CCACCGCAACCAGAAGGAGA+AGG | 0.537496 | 6_4:-46389349 | Msa0989450:three_prime_UTR |
| AAATGAAATGTTTGTAGATG+TGG | 0.537685 | 6_4:-46389254 | Msa0989450:three_prime_UTR |
| GGTGATACAGTGTCAGTATG+AGG | 0.540392 | 6_4:-46389471 | Msa0989450:three_prime_UTR |
| TTAGAAGAGGGAAGAAAGTG+TGG | 0.542237 | 6_4:+46392344 | None:intergenic |
| AAAGAAATACACAATATGAA+TGG | 0.543270 | 6_4:+46391113 | None:intergenic |
| GCCAGAAAGTCTCAGGGGCG+TGG | 0.544668 | 6_4:-46393004 | Msa0989450:CDS |
| ATCTTGATCAGGTTCAGGTA+AGG | 0.545981 | 6_4:+46393564 | None:intergenic |
| AATAAAATCCAAGAAAGTGT+AGG | 0.548252 | 6_4:-46390179 | Msa0989450:three_prime_UTR |
| TCATGTCATATTGATTTCGC+CGG | 0.549696 | 6_4:+46391158 | None:intergenic |
| GCAAAAGGACAATGACATGC+AGG | 0.553237 | 6_4:+46393265 | None:intergenic |
| ATGATCTGAACCGTAATGCA+TGG | 0.555568 | 6_4:-46393543 | Msa0989450:CDS |
| TTTATCTTCTATCTTCACCA+TGG | 0.556199 | 6_4:+46391756 | None:intergenic |
| TGTGAATAAGCAAAATTCAC+AGG | 0.559651 | 6_4:-46392885 | Msa0989450:CDS |
| AAAGAAGTCCTGCGATTTGG+TGG | 0.561416 | 6_4:-46389597 | Msa0989450:three_prime_UTR |
| TTCAGATACATCACTAGAAG+AGG | 0.562978 | 6_4:+46392856 | None:intergenic |
| TTGCAGAAAGTACAATGTCT+GGG | 0.564782 | 6_4:+46392959 | None:intergenic |
| AGTTCATCCCACCAAATCGC+AGG | 0.565089 | 6_4:+46389589 | None:intergenic |
| GTGCGGCCACCGCAACCAGA+AGG | 0.569602 | 6_4:-46389355 | Msa0989450:three_prime_UTR |
| TCTTTGATTTGCTGTTGGTG+TGG | 0.571367 | 6_4:-46389634 | Msa0989450:three_prime_UTR |
| TTGTCTGCTTCGGTGATTCG+CGG | 0.572285 | 6_4:+46392565 | None:intergenic |
| GAAAACACTTTGTTCAGTGT+AGG | 0.572908 | 6_4:+46393115 | None:intergenic |
| ACTTTGTTCAGTGTAGGAAG+AGG | 0.576100 | 6_4:+46393121 | None:intergenic |
| TTCGCTGGGATGAACAAAGA+AGG | 0.576523 | 6_4:+46393702 | None:intergenic |
| CCTTCTCCTTCTGGTTGCGG+TGG | 0.584742 | 6_4:+46389349 | None:intergenic |
| TAGAAGAGGGAAGAAAGTGT+GGG | 0.586165 | 6_4:+46392345 | None:intergenic |
| TTATAAGCCATGAATGAACT+AGG | 0.589592 | 6_4:+46393506 | None:intergenic |
| TCTCAGGGGCGTGGTAAAGG+TGG | 0.591201 | 6_4:-46392995 | Msa0989450:CDS |
| ATGGTGAAGATAGAAGATAA+AGG | 0.593300 | 6_4:-46391754 | Msa0989450:three_prime_UTR |
| GCTCTCTTCTTGAACAACCA+AGG | 0.597509 | 6_4:+46393093 | None:intergenic |
| AATTGAAAACTATATGGTGG+TGG | 0.600622 | 6_4:-46389380 | Msa0989450:three_prime_UTR |
| GGATGAACTAGATCCAAAAG+AGG | 0.603004 | 6_4:-46389575 | Msa0989450:three_prime_UTR |
| TGAAAACTATATGGTGGTGG+AGG | 0.605543 | 6_4:-46389377 | Msa0989450:three_prime_UTR |
| TATCTTCAACCTTCAACACA+TGG | 0.606912 | 6_4:+46391568 | None:intergenic |
| AAAGAAAGTTCACTTCTCCA+TGG | 0.607605 | 6_4:-46391773 | Msa0989450:three_prime_UTR |
| TGATCTGAACCGTAATGCAT+GGG | 0.608054 | 6_4:-46393542 | Msa0989450:CDS |
| TCGCTTCATACATTGAAGCA+AGG | 0.610677 | 6_4:-46393361 | Msa0989450:CDS |
| ACTATATGGTGGTGGAGGTG+CGG | 0.615339 | 6_4:-46389372 | Msa0989450:three_prime_UTR |
| GGGAAGAGTTGCACTCACAT+AGG | 0.616053 | 6_4:-46393294 | Msa0989450:CDS |
| TTTGATGCCAGAAAGTCTCA+GGG | 0.622024 | 6_4:-46393010 | Msa0989450:CDS |
| GCAACCAGAAGGAGAAGGAG+CGG | 0.630733 | 6_4:-46389344 | Msa0989450:three_prime_UTR |
| CAGACAAACAAAATGATCGA+AGG | 0.632787 | 6_4:-46392549 | Msa0989450:intron |
| ACCAGAAGGAGAAGGAGCGG+CGG | 0.633155 | 6_4:-46389341 | Msa0989450:three_prime_UTR |
| TCATTCATGGAGTTTAGCAG+CGG | 0.648637 | 6_4:+46389529 | None:intergenic |
| GGAAATTGAAAACTATATGG+TGG | 0.682928 | 6_4:-46389383 | Msa0989450:three_prime_UTR |
| GATGAACTAGATCCAAAAGA+GGG | 0.688786 | 6_4:-46389574 | Msa0989450:three_prime_UTR |
| AAGAAGTCCTGCGATTTGGT+GGG | 0.691563 | 6_4:-46389596 | Msa0989450:three_prime_UTR |
| TGAACAAACACACTCTACCG+TGG | 0.692170 | 6_4:+46391006 | None:intergenic |
| GCAGTTGCTGAATTGACAAG+TGG | 0.707330 | 6_4:-46392395 | Msa0989450:CDS |
| GCTGGGATGAACAAAGAAGG+CGG | 0.708592 | 6_4:+46393705 | None:intergenic |
| CAGAAAGTACAATGTCTGGG+AGG | 0.726332 | 6_4:+46392962 | None:intergenic |
| TTGATGCCAGAAAGTCTCAG+GGG | 0.759290 | 6_4:-46393009 | Msa0989450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATACAAAAATAAAAATA+AGG | + | chr6_4:46391128-46391147 | None:intergenic | 10.0% |
| !! | AGAAAATAATAAGAAATATA+AGG | + | chr6_4:46391489-46391508 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAATAAACAAA+AGG | + | chr6_4:46391836-46391855 | None:intergenic | 10.0% |
| !! | TTGTAAAAACAAATTATTAA+TGG | + | chr6_4:46392052-46392071 | None:intergenic | 10.0% |
| !! | AATCTCTTATAATATAAGAA+AGG | - | chr6_4:46390285-46390304 | Msa0989450:three_prime_UTR | 15.0% |
| !!! | GGTAATTTTGTAAAAAAAAT+CGG | + | chr6_4:46390660-46390679 | None:intergenic | 15.0% |
| !! | ATAAAATAAACTTGAAGAAA+TGG | + | chr6_4:46390837-46390856 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGGAATTGAA+TGG | + | chr6_4:46391118-46391137 | None:intergenic | 15.0% |
| !!! | AATTTTTTTCAATCAAAAGA+AGG | + | chr6_4:46391706-46391725 | None:intergenic | 15.0% |
| !!! | ATTATTGTTATCAAAAGCAT+GGG | - | chr6_4:46389864-46389883 | Msa0989450:three_prime_UTR | 20.0% |
| !!! | TGTTTAAGTTATGAAAGAAA+TGG | - | chr6_4:46390097-46390116 | Msa0989450:three_prime_UTR | 20.0% |
| !! | CAAAATTCAAATTTAGAAGA+GGG | + | chr6_4:46390451-46390470 | None:intergenic | 20.0% |
| !! | TCAAAATTCAAATTTAGAAG+AGG | + | chr6_4:46390452-46390471 | None:intergenic | 20.0% |
| !!! | ATACTGATTTAACATTAGTT+GGG | + | chr6_4:46390524-46390543 | None:intergenic | 20.0% |
| !!! | TATACTGATTTAACATTAGT+TGG | + | chr6_4:46390525-46390544 | None:intergenic | 20.0% |
| !! | ATATATGTGTAGAAAACAAA+AGG | + | chr6_4:46390681-46390700 | None:intergenic | 20.0% |
| !!! | GTTTCATACCTTTTTTTTTT+TGG | + | chr6_4:46391277-46391296 | None:intergenic | 20.0% |
| !!! | TTAATTTTGTAAGTCAATCA+TGG | + | chr6_4:46391513-46391532 | None:intergenic | 20.0% |
| !! | AAAGAAATACACAATATGAA+TGG | + | chr6_4:46391670-46391689 | None:intergenic | 20.0% |
| !!! | TTTTTCCAATTACAATTTGT+TGG | + | chr6_4:46391741-46391760 | None:intergenic | 20.0% |
| !!! | TGTCATTCTTTATTTCTAAA+AGG | - | chr6_4:46392166-46392185 | Msa0989450:intron | 20.0% |
| !! | TTCTTCTGATAAAACAAAAT+TGG | + | chr6_4:46392520-46392539 | None:intergenic | 20.0% |
| !!! | TCTTTTGATAATACTTCTAT+TGG | + | chr6_4:46392819-46392838 | None:intergenic | 20.0% |
| !!! | AGTCAAGAAGTTTTTTTTAA+TGG | + | chr6_4:46392865-46392884 | None:intergenic | 20.0% |
| !!! | TTAATATCACTTTTCTTGTT+CGG | + | chr6_4:46392888-46392907 | None:intergenic | 20.0% |
| !! | ATGATTATGCAAAAAGAAAA+AGG | - | chr6_4:46392931-46392950 | Msa0989450:CDS | 20.0% |
| !!! | TTTTATAGATCTGATACTAA+TGG | + | chr6_4:46393002-46393021 | None:intergenic | 20.0% |
| !! | AATGGAAATTGAAAACTATA+TGG | - | chr6_4:46393394-46393413 | Msa0989450:CDS | 20.0% |
| ! | ACAATAATCAACAGTATGAT+TGG | + | chr6_4:46389852-46389871 | None:intergenic | 25.0% |
| ! | GATTATTGTTATCAAAAGCA+TGG | - | chr6_4:46389863-46389882 | Msa0989450:three_prime_UTR | 25.0% |
| !! | GAATTTTGCTTATTCACATT+GGG | + | chr6_4:46389893-46389912 | None:intergenic | 25.0% |
| !! | TGAATTTTGCTTATTCACAT+TGG | + | chr6_4:46389894-46389913 | None:intergenic | 25.0% |
| ! | ATGAAAATTGTTTACTTTCC+AGG | - | chr6_4:46390156-46390175 | Msa0989450:three_prime_UTR | 25.0% |
| ! | TGAAAATTGTTTACTTTCCA+GGG | - | chr6_4:46390157-46390176 | Msa0989450:three_prime_UTR | 25.0% |
| !!! | ACATGCTTACTTTTTTTTGA+GGG | + | chr6_4:46390795-46390814 | None:intergenic | 25.0% |
| ! | TCAACAAAATCAGAAATGAA+AGG | + | chr6_4:46391307-46391326 | None:intergenic | 25.0% |
| !!! | TGTTGTGATTCTTATTTTGA+AGG | - | chr6_4:46391388-46391407 | Msa0989450:intron | 25.0% |
| !!! | ATTCTTATTTTGAAGGTTGA+AGG | - | chr6_4:46391395-46391414 | Msa0989450:intron | 25.0% |
| ! | CTATAGAAACAAAAGAGATT+GGG | + | chr6_4:46391437-46391456 | None:intergenic | 25.0% |
| ! | ACTATAGAAACAAAAGAGAT+TGG | + | chr6_4:46391438-46391457 | None:intergenic | 25.0% |
| !! | AAATGAGACATTTTTGTAAC+CGG | - | chr6_4:46391603-46391622 | Msa0989450:intron | 25.0% |
| ! | ATATGACATGATTTAGATCA+AGG | - | chr6_4:46391634-46391653 | Msa0989450:intron | 25.0% |
| ! | AAAAAAAAAATCAACAGCCA+CGG | - | chr6_4:46391757-46391776 | Msa0989450:three_prime_UTR | 25.0% |
| ! | AAAAATGAAAACAACCATGA+AGG | - | chr6_4:46391927-46391946 | Msa0989450:intron | 25.0% |
| !!! | TAATTTGTTTTTACAACCTG+TGG | - | chr6_4:46392056-46392075 | Msa0989450:intron | 25.0% |
| !!! | GAATATTTTTAAATAGCCAC+AGG | + | chr6_4:46392075-46392094 | None:intergenic | 25.0% |
| !! | CTTACTGCTATTGATTAAAA+AGG | + | chr6_4:46392556-46392575 | None:intergenic | 25.0% |
| !! | AATAAAATCCAAGAAAGTGT+AGG | - | chr6_4:46392601-46392620 | Msa0989450:CDS | 25.0% |
| !!! | ATTTTTTTCCTACACTTTCT+TGG | + | chr6_4:46392612-46392631 | None:intergenic | 25.0% |
| ! | CTAATAGAAGAATTACCAAA+AGG | - | chr6_4:46392973-46392992 | Msa0989450:CDS | 25.0% |
| ! | AGATCGAAGTTAATCAAAAA+TGG | - | chr6_4:46393273-46393292 | Msa0989450:CDS | 25.0% |
| !!! | ATCAAAAATGGTGTTTTTAG+TGG | - | chr6_4:46393285-46393304 | Msa0989450:CDS | 25.0% |
| ! | TAAGATTGTTAGTGTTGTAA+TGG | - | chr6_4:46393376-46393395 | Msa0989450:CDS | 25.0% |
| ! | AAATGAAATGTTTGTAGATG+TGG | - | chr6_4:46393526-46393545 | Msa0989450:CDS | 25.0% |
| ! | AAATAAAAAATATGTGGGTG+TGG | - | chr6_4:46393582-46393601 | Msa0989450:CDS | 25.0% |
| TAACAATCAGCATCAACAAT+CGG | - | chr6_4:46389043-46389062 | Msa0989450:three_prime_UTR | 30.0% | |
| GGTAAAACAACAACGAAATT+TGG | + | chr6_4:46389107-46389126 | None:intergenic | 30.0% | |
| !! | GTTGTTTTACCAAAGTTCAA+TGG | - | chr6_4:46389116-46389135 | Msa0989450:three_prime_UTR | 30.0% |
| TAGTTAGAACCATTGAACTT+TGG | + | chr6_4:46389128-46389147 | None:intergenic | 30.0% | |
| !! | ATGGTTCTAACTATCTTTCA+TGG | - | chr6_4:46389135-46389154 | Msa0989450:three_prime_UTR | 30.0% |
| TTATAAGCCATGAATGAACT+AGG | + | chr6_4:46389277-46389296 | None:intergenic | 30.0% | |
| TCATTCATGGCTTATAAACT+CGG | - | chr6_4:46389280-46389299 | Msa0989450:three_prime_UTR | 30.0% | |
| AATGCGAATTCTATCAACTT+TGG | + | chr6_4:46389384-46389403 | None:intergenic | 30.0% | |
| CAGTGAGAAATTGAATAATC+TGG | + | chr6_4:46389589-46389608 | None:intergenic | 30.0% | |
| CAGATTATTCAATTTCTCAC+TGG | - | chr6_4:46389587-46389606 | Msa0989450:three_prime_UTR | 30.0% | |
| ! | TCTCAATGAACAATTTTCAG+TGG | - | chr6_4:46389610-46389629 | Msa0989450:three_prime_UTR | 30.0% |
| TGTGAATAAGCAAAATTCAC+AGG | - | chr6_4:46389895-46389914 | Msa0989450:three_prime_UTR | 30.0% | |
| ! | TCTGAAGTCAATATTTCTAC+TGG | - | chr6_4:46389941-46389960 | Msa0989450:three_prime_UTR | 30.0% |
| ! | AATATTTCTACTGGTGTATC+TGG | - | chr6_4:46389950-46389969 | Msa0989450:three_prime_UTR | 30.0% |
| CATGATAGTAGATGAAAAGA+AGG | + | chr6_4:46390139-46390158 | None:intergenic | 30.0% | |
| GAAAATTGTTTACTTTCCAG+GGG | - | chr6_4:46390158-46390177 | Msa0989450:three_prime_UTR | 30.0% | |
| AAAATTGTTTACTTTCCAGG+GGG | - | chr6_4:46390159-46390178 | Msa0989450:three_prime_UTR | 30.0% | |
| !! | ATCATTTTGTTTGTCTGCTT+CGG | + | chr6_4:46390228-46390247 | None:intergenic | 30.0% |
| AAATGATCAGTCTGCTAAAT+TGG | + | chr6_4:46390263-46390282 | None:intergenic | 30.0% | |
| AGAACATTGAGATCTGAATA+GGG | + | chr6_4:46390738-46390757 | None:intergenic | 30.0% | |
| !!! | GACATGCTTACTTTTTTTTG+AGG | + | chr6_4:46390796-46390815 | None:intergenic | 30.0% |
| TTTATCTTCTATCTTCACCA+TGG | + | chr6_4:46391027-46391046 | None:intergenic | 30.0% | |
| ATGGTGAAGATAGAAGATAA+AGG | - | chr6_4:46391026-46391045 | Msa0989450:three_prime_UTR | 30.0% | |
| ! | AAGGAATTGAATGGTTAGTT+TGG | + | chr6_4:46391109-46391128 | None:intergenic | 30.0% |
| AGAACAACATAGATCTAACA+TGG | + | chr6_4:46391189-46391208 | None:intergenic | 30.0% | |
| CTACGATGCCAAAAAAAAAA+AGG | - | chr6_4:46391266-46391285 | Msa0989450:intron | 30.0% | |
| TGTTGTGATTCTTATGTTGA+AGG | - | chr6_4:46391572-46391591 | Msa0989450:three_prime_UTR | 30.0% | |
| TAGAGCCAACAAATTGTAAT+TGG | - | chr6_4:46391733-46391752 | Msa0989450:three_prime_UTR | 30.0% | |
| TTCTTGTTCATAATCCTTCA+TGG | + | chr6_4:46391944-46391963 | None:intergenic | 30.0% | |
| ! | TGCTAACAAGAAAAGTTTTC+AGG | - | chr6_4:46392688-46392707 | Msa0989450:intron | 30.0% |
| !! | TGTAATCTTTGATTTGCTGT+TGG | - | chr6_4:46393141-46393160 | Msa0989450:CDS | 30.0% |
| ATTAACTTCGATCTCATTCA+TGG | + | chr6_4:46393267-46393286 | None:intergenic | 30.0% | |
| !!! | AAAAATGGTGTTTTTAGTGG+CGG | - | chr6_4:46393288-46393307 | Msa0989450:CDS | 30.0% |
| GGAAATTGAAAACTATATGG+TGG | - | chr6_4:46393397-46393416 | Msa0989450:CDS | 30.0% | |
| AATTGAAAACTATATGGTGG+TGG | - | chr6_4:46393400-46393419 | Msa0989450:CDS | 30.0% | |
| GGATTATTTCACAGAGATGA+AGG | - | chr6_4:46389457-46389476 | Msa0989450:three_prime_UTR | 35.0% | |
| TGAAGTTACCTAAGACCTAT+AGG | - | chr6_4:46389555-46389574 | Msa0989450:three_prime_UTR | 35.0% | |
| GAAGTTACCTAAGACCTATA+GGG | - | chr6_4:46389556-46389575 | Msa0989450:three_prime_UTR | 35.0% | |
| GAAAACACTTTGTTCAGTGT+AGG | + | chr6_4:46389668-46389687 | None:intergenic | 35.0% | |
| !! | ACTGAACAAAGTGTTTTCCT+TGG | - | chr6_4:46389670-46389689 | Msa0989450:three_prime_UTR | 35.0% |
| TAATACTTCTGTACCTGCTA+TGG | - | chr6_4:46389712-46389731 | Msa0989450:three_prime_UTR | 35.0% | |
| ! | TTGCAGAAAGTACAATGTCT+GGG | + | chr6_4:46389824-46389843 | None:intergenic | 35.0% |
| TTCAGATACATCACTAGAAG+AGG | + | chr6_4:46389927-46389946 | None:intergenic | 35.0% | |
| CAGACAAACAAAATGATCGA+AGG | - | chr6_4:46390231-46390250 | Msa0989450:three_prime_UTR | 35.0% | |
| ! | AAAGTGTGGGAAAAGGTTTT+GGG | + | chr6_4:46390425-46390444 | None:intergenic | 35.0% |
| ATTAGAGAGAGAAGCTTACT+TGG | + | chr6_4:46390618-46390637 | None:intergenic | 35.0% | |
| GAGAACATTGAGATCTGAAT+AGG | + | chr6_4:46390739-46390758 | None:intergenic | 35.0% | |
| AAAGAAAGTTCACTTCTCCA+TGG | - | chr6_4:46391007-46391026 | Msa0989450:three_prime_UTR | 35.0% | |
| TGTTCTTATCCATGTGTTGA+AGG | - | chr6_4:46391203-46391222 | Msa0989450:three_prime_UTR | 35.0% | |
| TATCTTCAACCTTCAACACA+TGG | + | chr6_4:46391215-46391234 | None:intergenic | 35.0% | |
| !! | TCATGTCATATTGATTTCGC+CGG | + | chr6_4:46391625-46391644 | None:intergenic | 35.0% |
| ! | GTCATCTTCAATGATTTTGC+AGG | - | chr6_4:46392757-46392776 | Msa0989450:intron | 35.0% |
| ! | TGGAGTCAATGAATCTGTTT+TGG | + | chr6_4:46392845-46392864 | None:intergenic | 35.0% |
| ! | TGATACTAATGGTAGCCTTT+TGG | + | chr6_4:46392991-46393010 | None:intergenic | 35.0% |
| GATGAACTAGATCCAAAAGA+GGG | - | chr6_4:46393206-46393225 | Msa0989450:CDS | 35.0% | |
| AACAAGCTCTCCTTCATCAA+TGG | - | chr6_4:46389191-46389210 | Msa0989450:three_prime_UTR | 40.0% | |
| AGGTAAGGTTCCATTGATGA+AGG | + | chr6_4:46389204-46389223 | None:intergenic | 40.0% | |
| ATCTTGATCAGGTTCAGGTA+AGG | + | chr6_4:46389219-46389238 | None:intergenic | 40.0% | |
| AGATCATCTTGATCAGGTTC+AGG | + | chr6_4:46389224-46389243 | None:intergenic | 40.0% | |
| ATGATCTGAACCGTAATGCA+TGG | - | chr6_4:46389237-46389256 | Msa0989450:three_prime_UTR | 40.0% | |
| TGATCTGAACCGTAATGCAT+GGG | - | chr6_4:46389238-46389257 | Msa0989450:three_prime_UTR | 40.0% | |
| GCAATCACCTAGTTCATTCA+TGG | - | chr6_4:46389267-46389286 | Msa0989450:three_prime_UTR | 40.0% | |
| CAAATCTTCCCAAACCTCAA+AGG | + | chr6_4:46389348-46389367 | None:intergenic | 40.0% | |
| TCGCTTCATACATTGAAGCA+AGG | - | chr6_4:46389419-46389438 | Msa0989450:three_prime_UTR | 40.0% | |
| GCAAGGTAACAAGTCTGTAT+TGG | - | chr6_4:46389436-46389455 | Msa0989450:three_prime_UTR | 40.0% | |
| ACATCACACTTGCAAGCAAA+AGG | + | chr6_4:46389533-46389552 | None:intergenic | 40.0% | |
| TCTTCAACCCTATAGGTCTT+AGG | + | chr6_4:46389566-46389585 | None:intergenic | 40.0% | |
| ! | AATCTGGTCTTCAACCCTAT+AGG | + | chr6_4:46389573-46389592 | None:intergenic | 40.0% |
| ACTTTGTTCAGTGTAGGAAG+AGG | + | chr6_4:46389662-46389681 | None:intergenic | 40.0% | |
| ! | TTTTGATGCCAGAAAGTCTC+AGG | - | chr6_4:46389769-46389788 | Msa0989450:three_prime_UTR | 40.0% |
| TTTGATGCCAGAAAGTCTCA+GGG | - | chr6_4:46389770-46389789 | Msa0989450:three_prime_UTR | 40.0% | |
| ! | GTTGCAGAAAGTACAATGTC+TGG | + | chr6_4:46389825-46389844 | None:intergenic | 40.0% |
| !! | GAAAGTGTGGGAAAAGGTTT+TGG | + | chr6_4:46390426-46390445 | None:intergenic | 40.0% |
| ! | TAGAAGAGGGAAGAAAGTGT+GGG | + | chr6_4:46390438-46390457 | None:intergenic | 40.0% |
| TTAGAAGAGGGAAGAAAGTG+TGG | + | chr6_4:46390439-46390458 | None:intergenic | 40.0% | |
| GAGAGAAGCTTACTTGGATA+TGG | + | chr6_4:46390612-46390631 | None:intergenic | 40.0% | |
| !! | TCTTTGATTTGCTGTTGGTG+TGG | - | chr6_4:46393146-46393165 | Msa0989450:CDS | 40.0% |
| GGATGAACTAGATCCAAAAG+AGG | - | chr6_4:46393205-46393224 | Msa0989450:CDS | 40.0% | |
| ! | TCATCATGTAAGCCCTCTTT+TGG | + | chr6_4:46393221-46393240 | None:intergenic | 40.0% |
| TCATTCATGGAGTTTAGCAG+CGG | + | chr6_4:46393254-46393273 | None:intergenic | 40.0% | |
| !! | TGAAAACTATATGGTGGTGG+AGG | - | chr6_4:46393403-46393422 | Msa0989450:CDS | 40.0% |
| TTCGCTGGGATGAACAAAGA+AGG | + | chr6_4:46389081-46389100 | None:intergenic | 45.0% | |
| TTCTTTGTTCATCCCAGCGA+AGG | - | chr6_4:46389080-46389099 | Msa0989450:three_prime_UTR | 45.0% | |
| ACGAAATTTGGTCCTTCGCT+GGG | + | chr6_4:46389095-46389114 | None:intergenic | 45.0% | |
| AACGAAATTTGGTCCTTCGC+TGG | + | chr6_4:46389096-46389115 | None:intergenic | 45.0% | |
| CGGTTCAGATCATCTTGATC+AGG | + | chr6_4:46389230-46389249 | None:intergenic | 45.0% | |
| TGCAACGTTCCCATGCATTA+CGG | + | chr6_4:46389250-46389269 | None:intergenic | 45.0% | |
| CTTTCATGACACTGCCTTTG+AGG | - | chr6_4:46389331-46389350 | Msa0989450:three_prime_UTR | 45.0% | |
| !! | ATGACACTGCCTTTGAGGTT+TGG | - | chr6_4:46389336-46389355 | Msa0989450:three_prime_UTR | 45.0% |
| !! | TGACACTGCCTTTGAGGTTT+GGG | - | chr6_4:46389337-46389356 | Msa0989450:three_prime_UTR | 45.0% |
| TCACAGAGATGAAGGCTTTG+TGG | - | chr6_4:46389465-46389484 | Msa0989450:three_prime_UTR | 45.0% | |
| ! | CACAGAGATGAAGGCTTTGT+GGG | - | chr6_4:46389466-46389485 | Msa0989450:three_prime_UTR | 45.0% |
| GCAAAAGGACAATGACATGC+AGG | + | chr6_4:46389518-46389537 | None:intergenic | 45.0% | |
| GCTCTCTTCTTGAACAACCA+AGG | + | chr6_4:46389690-46389709 | None:intergenic | 45.0% | |
| TCATCAAGAGTCACCATAGC+AGG | + | chr6_4:46389728-46389747 | None:intergenic | 45.0% | |
| TTGATGCCAGAAAGTCTCAG+GGG | - | chr6_4:46389771-46389790 | Msa0989450:three_prime_UTR | 45.0% | |
| ! | CAGAAAGTACAATGTCTGGG+AGG | + | chr6_4:46389821-46389840 | None:intergenic | 45.0% |
| TGTTTACTTTCCAGGGGGAA+AGG | - | chr6_4:46390164-46390183 | Msa0989450:three_prime_UTR | 45.0% | |
| TGCAGCTTTGCTTGACAAGT+GGG | - | chr6_4:46390363-46390382 | Msa0989450:three_prime_UTR | 45.0% | |
| GCAGTTGCTGAATTGACAAG+TGG | - | chr6_4:46390385-46390404 | Msa0989450:three_prime_UTR | 45.0% | |
| ! | AGGGAAGAAAGTGTGGGAAA+AGG | + | chr6_4:46390432-46390451 | None:intergenic | 45.0% |
| TGAACAAACACACTCTACCG+TGG | + | chr6_4:46391777-46391796 | None:intergenic | 45.0% | |
| GTGAAAGAAGTCCTGCGATT+TGG | - | chr6_4:46393180-46393199 | Msa0989450:CDS | 45.0% | |
| ! | AAAGAAGTCCTGCGATTTGG+TGG | - | chr6_4:46393183-46393202 | Msa0989450:CDS | 45.0% |
| !! | AAGAAGTCCTGCGATTTGGT+GGG | - | chr6_4:46393184-46393203 | Msa0989450:CDS | 45.0% |
| GGTGATACAGTGTCAGTATG+AGG | - | chr6_4:46393309-46393328 | Msa0989450:CDS | 45.0% | |
| !!! | CGGCGGCTATGGTTTTTTAA+GGG | - | chr6_4:46393456-46393475 | Msa0989450:CDS | 45.0% |
| ! | GTAGATGTGGTGTGAGTTGA+AGG | - | chr6_4:46393539-46393558 | Msa0989450:CDS | 45.0% |
| !! | TAAAATAAATAAAAAATATG+TGG | - | chr6_4:46393576-46393595 | Msa0989450:CDS | 5.0% |
| !! | AAAATAAATAAAAAATATGT+GGG | - | chr6_4:46393577-46393596 | Msa0989450:CDS | 5.0% |
| GCTGGGATGAACAAAGAAGG+CGG | + | chr6_4:46389078-46389097 | None:intergenic | 50.0% | |
| CGTTCTATGCAACGCGCTTT+AGG | - | chr6_4:46389161-46389180 | Msa0989450:three_prime_UTR | 50.0% | |
| GGGAAGAGTTGCACTCACAT+AGG | - | chr6_4:46389486-46389505 | Msa0989450:three_prime_UTR | 50.0% | |
| GGACAATGACATGCAGGAAG+AGG | + | chr6_4:46389512-46389531 | None:intergenic | 50.0% | |
| CTGATAATCACCTTTCCCCC+TGG | + | chr6_4:46390177-46390196 | None:intergenic | 50.0% | |
| TTGTCTGCTTCGGTGATTCG+CGG | + | chr6_4:46390218-46390237 | None:intergenic | 50.0% | |
| ! | CAGCGTGTATGTGTGCCATT+TGG | - | chr6_4:46390339-46390358 | Msa0989450:three_prime_UTR | 50.0% |
| CAAGCAAAGCTGCAGCCAAA+TGG | + | chr6_4:46390357-46390376 | None:intergenic | 50.0% | |
| CTGCAGCTTTGCTTGACAAG+TGG | - | chr6_4:46390362-46390381 | Msa0989450:three_prime_UTR | 50.0% | |
| AGTTCATCCCACCAAATCGC+AGG | + | chr6_4:46393194-46393213 | None:intergenic | 50.0% | |
| !! | ACTATATGGTGGTGGAGGTG+CGG | - | chr6_4:46393408-46393427 | Msa0989450:CDS | 50.0% |
| !!! | GCGGCGGCTATGGTTTTTTA+AGG | - | chr6_4:46393455-46393474 | Msa0989450:CDS | 50.0% |
| ! | AAGTCTCAGGGGCGTGGTAA+AGG | - | chr6_4:46389782-46389801 | Msa0989450:three_prime_UTR | 55.0% |
| ! | GCTCCTTCTCCTTCTGGTTG+CGG | + | chr6_4:46393437-46393456 | None:intergenic | 55.0% |
| GCAACCAGAAGGAGAAGGAG+CGG | - | chr6_4:46393436-46393455 | Msa0989450:CDS | 55.0% | |
| ACCACGCCCCTGAGACTTTC+TGG | + | chr6_4:46389780-46389799 | None:intergenic | 60.0% | |
| ! | TCTCAGGGGCGTGGTAAAGG+TGG | - | chr6_4:46389785-46389804 | Msa0989450:three_prime_UTR | 60.0% |
| CTGCACCACAAGGCGACATC+TGG | - | chr6_4:46390316-46390335 | Msa0989450:three_prime_UTR | 60.0% | |
| ! | CCTTCTCCTTCTGGTTGCGG+TGG | + | chr6_4:46393434-46393453 | None:intergenic | 60.0% |
| CCACCGCAACCAGAAGGAGA+AGG | - | chr6_4:46393431-46393450 | Msa0989450:CDS | 60.0% | |
| ACCAGAAGGAGAAGGAGCGG+CGG | - | chr6_4:46393439-46393458 | Msa0989450:CDS | 60.0% | |
| GCCAGAAAGTCTCAGGGGCG+TGG | - | chr6_4:46389776-46389795 | Msa0989450:three_prime_UTR | 65.0% | |
| GCTTCGGTGATTCGCGGTGC+TGG | + | chr6_4:46390212-46390231 | None:intergenic | 65.0% | |
| GGAGTGCACGCTGCACCACA+AGG | - | chr6_4:46390306-46390325 | Msa0989450:three_prime_UTR | 65.0% | |
| CGCTGCCAGATGTCGCCTTG+TGG | + | chr6_4:46390324-46390343 | None:intergenic | 65.0% | |
| AGGAGAAGGAGCGGCGGCTA+TGG | - | chr6_4:46393445-46393464 | Msa0989450:CDS | 65.0% | |
| GTGCGGCCACCGCAACCAGA+AGG | - | chr6_4:46393425-46393444 | Msa0989450:CDS | 70.0% | |
| GCCGCCGCTCCTTCTCCTTC+TGG | + | chr6_4:46393443-46393462 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 46389032 | 46393770 | 46389032 | ID=Msa0989450;Name=Msa0989450 |
| chr6_4 | mRNA | 46389032 | 46393770 | 46389032 | ID=Msa0989450-mRNA-1;Parent=Msa0989450;Name=Msa0989450-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.71|0.62|0.75|0.28|0.25|8|2665|372 |
| chr6_4 | exon | 46389032 | 46391238 | 46389032 | ID=Msa0989450-mRNA-1:exon:10485;Parent=Msa0989450-mRNA-1 |
| chr6_4 | exon | 46391333 | 46391392 | 46391333 | ID=Msa0989450-mRNA-1:exon:10484;Parent=Msa0989450-mRNA-1 |
| chr6_4 | exon | 46391515 | 46391607 | 46391515 | ID=Msa0989450-mRNA-1:exon:10483;Parent=Msa0989450-mRNA-1 |
| chr6_4 | exon | 46391704 | 46391801 | 46391704 | ID=Msa0989450-mRNA-1:exon:10482;Parent=Msa0989450-mRNA-1 |
| chr6_4 | exon | 46391998 | 46392057 | 46391998 | ID=Msa0989450-mRNA-1:exon:10481;Parent=Msa0989450-mRNA-1 |
| chr6_4 | exon | 46392184 | 46392434 | 46392184 | ID=Msa0989450-mRNA-1:exon:10480;Parent=Msa0989450-mRNA-1 |
| chr6_4 | exon | 46392550 | 46392624 | 46392550 | ID=Msa0989450-mRNA-1:exon:10479;Parent=Msa0989450-mRNA-1 |
| chr6_4 | exon | 46392831 | 46393770 | 46392831 | ID=Msa0989450-mRNA-1:exon:10478;Parent=Msa0989450-mRNA-1 |
| chr6_4 | CDS | 46392831 | 46393770 | 46392831 | ID=Msa0989450-mRNA-1:cds;Parent=Msa0989450-mRNA-1 |
| chr6_4 | CDS | 46392550 | 46392624 | 46392550 | ID=Msa0989450-mRNA-1:cds;Parent=Msa0989450-mRNA-1 |
| chr6_4 | CDS | 46392331 | 46392434 | 46392331 | ID=Msa0989450-mRNA-1:cds;Parent=Msa0989450-mRNA-1 |
| chr6_4 | three_prime_UTR | 46392184 | 46392330 | 46392184 | ID=Msa0989450-mRNA-1:three_prime_utr;Parent=Msa0989450-mRNA-1 |
| chr6_4 | three_prime_UTR | 46391998 | 46392057 | 46391998 | ID=Msa0989450-mRNA-1:three_prime_utr;Parent=Msa0989450-mRNA-1 |
| chr6_4 | three_prime_UTR | 46391704 | 46391801 | 46391704 | ID=Msa0989450-mRNA-1:three_prime_utr;Parent=Msa0989450-mRNA-1 |
| chr6_4 | three_prime_UTR | 46391515 | 46391607 | 46391515 | ID=Msa0989450-mRNA-1:three_prime_utr;Parent=Msa0989450-mRNA-1 |
| chr6_4 | three_prime_UTR | 46391333 | 46391392 | 46391333 | ID=Msa0989450-mRNA-1:three_prime_utr;Parent=Msa0989450-mRNA-1 |
| chr6_4 | three_prime_UTR | 46389032 | 46391238 | 46389032 | ID=Msa0989450-mRNA-1:three_prime_utr;Parent=Msa0989450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
