AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0954130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0954130 MtrunA17_Chr3g0105881 93.878 196 7 1 2 192 202 397 2.62e-127 363
Msa0954130 MtrunA17_Chr3g0086371 35.714 196 115 5 2 190 69 260 1.11e-31 115
Msa0954130 MtrunA17_Chr4g0058541 38.971 136 81 2 20 154 220 354 6.62e-21 89.4
Msa0954130 MtrunA17_Chr4g0058541 32.571 175 107 5 8 180 305 470 6.65e-14 69.3
Msa0954130 MtrunA17_Chr3g0116991 38.235 136 82 2 20 154 217 351 5.61e-19 84.0
Msa0954130 MtrunA17_Chr3g0116991 33.562 146 89 4 2 143 294 435 1.83e-12 65.1
Msa0954130 MtrunA17_Chr5g0407461 35.294 153 95 2 2 154 302 450 2.79e-16 76.3
Msa0954130 MtrunA17_Chr5g0407461 29.600 125 85 2 12 134 262 385 6.99e-15 72.0
Msa0954130 MtrunA17_Chr5g0407461 35.772 123 78 1 21 142 341 463 9.58e-15 71.6
Msa0954130 MtrunA17_Chr5g0407461 33.051 118 79 0 22 139 296 413 4.72e-14 69.7
Msa0954130 MtrunA17_Chr5g0407461 28.058 139 97 2 20 156 363 500 6.93e-12 63.5
Msa0954130 MtrunA17_Chr5g0407461 30.159 126 86 1 20 143 409 534 7.00e-12 63.5
Msa0954130 MtrunA17_Chr2g0317831 32.886 149 93 2 2 148 48 191 2.81e-16 76.3
Msa0954130 MtrunA17_Chr8g0370111 36.752 117 74 0 21 137 330 446 2.94e-16 76.3
Msa0954130 MtrunA17_Chr8g0370111 35.593 118 76 0 20 137 306 423 4.15e-15 72.8
Msa0954130 MtrunA17_Chr8g0370111 33.577 137 89 1 7 141 245 381 6.30e-14 69.3
Msa0954130 MtrunA17_Chr8g0370111 33.628 113 75 0 22 134 285 397 1.89e-12 65.1
Msa0954130 MtrunA17_Chr8g0370111 30.370 135 89 2 2 134 337 468 7.23e-12 63.2
Msa0954130 MtrunA17_Chr4g0052921 38.961 154 89 5 9 158 378 530 1.77e-14 71.2
Msa0954130 MtrunA17_Chr4g0054721 35.938 128 81 1 21 147 235 362 2.35e-14 70.5
Msa0954130 MtrunA17_Chr4g0054721 35.897 117 73 1 20 134 303 419 9.32e-13 65.9
Msa0954130 MtrunA17_Chr4g0054721 29.167 144 99 2 13 154 202 344 1.43e-12 65.5
Msa0954130 MtrunA17_Chr4g0054721 35.652 115 74 0 20 134 280 394 8.72e-12 63.2
Msa0954130 MtrunA17_Chr4g0054721 32.353 136 89 1 2 137 242 374 1.85e-11 62.0
Msa0954130 MtrunA17_Chr5g0447001 31.690 142 93 4 21 158 243 384 4.53e-14 69.7
Msa0954130 MtrunA17_Chr3g0144581 35.000 140 86 5 24 159 124 262 5.41e-13 66.6
Msa0954130 MtrunA17_Chr5g0412701 37.288 118 68 2 23 134 259 376 5.59e-13 66.6
Msa0954130 MtrunA17_Chr5g0412701 35.294 136 86 2 20 154 167 301 3.94e-12 63.9
Msa0954130 MtrunA17_Chr7g0218991 34.868 152 93 5 2 149 137 286 5.87e-13 66.6
Msa0954130 MtrunA17_Chr7g0257621 32.749 171 107 7 2 167 208 375 1.38e-12 65.5
Msa0954130 MtrunA17_Chr2g0296591 32.680 153 100 3 9 158 366 518 2.31e-12 65.1
Msa0954130 MtrunA17_Chr4g0051961 37.419 155 90 7 9 158 321 473 4.34e-12 64.3
Msa0954130 MtrunA17_Chr2g0296601 32.680 153 100 3 9 158 366 518 4.81e-12 63.9
Msa0954130 MtrunA17_Chr7g0237821 34.568 162 94 7 12 162 317 477 4.94e-12 63.9
Msa0954130 MtrunA17_Chr7g0237821 29.936 157 103 5 7 158 127 281 1.92e-11 62.4
Msa0954130 MtrunA17_Chr7g0237821 32.653 147 70 5 20 137 211 357 4.03e-11 61.2
Msa0954130 MtrunA17_Chr3g0129391 35.099 151 94 4 22 168 434 584 1.26e-11 62.8
Msa0954130 MtrunA17_Chr4g0058861 35.507 138 85 4 25 158 387 524 2.03e-11 62.0
Msa0954130 MtrunA17_Chr1g0201241 35.976 164 96 9 1 158 93 253 2.45e-11 62.0
Msa0954130 MtrunA17_Chr7g0232171 37.226 137 77 7 22 153 302 434 2.72e-11 61.6
Msa0954130 MtrunA17_Chr8g0362931 37.778 135 79 5 9 138 294 428 3.35e-11 61.6
Msa0954130 MtrunA17_Chr7g0261901 39.716 141 78 7 24 158 140 279 4.31e-11 61.2
Msa0954130 MtrunA17_Chr1g0189871 27.397 219 118 7 9 187 104 321 5.49e-11 60.8
Msa0954130 MtrunA17_Chr1g0169841 33.333 147 92 6 21 162 99 244 7.31e-11 60.5
Msa0954130 MtrunA17_Chr3g0126181 32.075 159 100 7 1 154 361 516 8.98e-11 60.5
Msa0954130 MtrunA17_Chr1g0165221 37.705 122 71 5 21 137 145 266 9.64e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0954130 AT2G30105.1 60.714 196 72 1 2 192 178 373 3.97e-80 243
Msa0954130 AT5G07910.1 39.205 176 101 2 22 191 87 262 2.25e-26 102
Msa0954130 AT3G26500.1 38.235 136 82 2 20 154 177 311 1.26e-17 80.5
Msa0954130 AT3G26500.1 30.412 194 115 7 2 181 231 418 9.55e-13 66.2
Msa0954130 AT3G15410.1 34.848 132 83 1 2 133 47 175 9.15e-17 77.8
Msa0954130 AT3G15410.1 37.226 137 83 2 20 155 154 288 1.04e-13 68.9
Msa0954130 AT3G15410.2 34.848 132 83 1 2 133 53 181 1.03e-16 77.8
Msa0954130 AT3G15410.2 37.226 137 83 2 20 155 160 294 1.04e-13 68.9
Msa0954130 AT3G11330.1 36.029 136 85 2 20 154 215 349 1.22e-16 77.4
Msa0954130 AT4G35470.2 37.681 138 79 3 2 137 271 403 1.48e-15 74.3
Msa0954130 AT4G35470.2 37.398 123 76 1 21 142 310 432 7.86e-15 72.4
Msa0954130 AT4G35470.2 31.210 157 102 3 2 156 317 469 1.27e-12 65.9
Msa0954130 AT4G35470.2 33.051 118 79 0 22 139 265 382 1.42e-12 65.9
Msa0954130 AT4G35470.2 33.846 130 84 1 7 134 225 354 2.12e-12 65.1
Msa0954130 AT1G12970.1 36.029 136 85 2 20 154 178 312 1.79e-15 73.9
Msa0954130 AT1G12970.1 33.333 123 79 2 20 139 247 369 2.16e-11 62.4
Msa0954130 AT4G35470.1 37.681 138 79 3 2 137 271 403 2.28e-15 73.9
Msa0954130 AT4G35470.1 37.398 123 76 1 21 142 310 432 9.47e-15 72.0
Msa0954130 AT4G35470.1 31.210 157 102 3 2 156 317 469 1.47e-12 65.9
Msa0954130 AT4G35470.1 33.051 118 79 0 22 139 265 382 2.03e-12 65.5
Msa0954130 AT4G35470.1 33.846 130 84 1 7 134 225 354 3.00e-12 64.7
Msa0954130 AT2G17440.1 36.066 122 76 1 25 144 298 419 4.23e-15 73.2
Msa0954130 AT2G17440.1 35.156 128 79 1 22 149 249 372 2.83e-12 65.1
Msa0954130 AT2G17440.1 32.479 117 77 1 20 134 362 478 4.68e-12 64.3
Msa0954130 AT2G17440.1 33.600 125 80 2 12 134 215 338 1.10e-11 63.2
Msa0954130 AT2G17440.1 29.677 155 103 3 2 154 301 451 1.31e-11 62.8
Msa0954130 AT2G17440.1 34.314 102 67 0 36 137 286 387 2.29e-11 62.4
Msa0954130 AT5G44700.1 37.500 160 93 7 4 158 364 521 1.19e-14 72.0
Msa0954130 AT4G20140.1 41.290 155 84 7 9 158 368 520 2.23e-14 71.2
Msa0954130 AT5G05850.1 35.294 136 86 2 20 154 221 355 5.66e-14 69.7
Msa0954130 AT5G05850.1 34.906 106 67 1 36 139 330 435 1.58e-11 62.8
Msa0954130 AT2G19330.1 35.374 147 87 4 2 144 155 297 9.17e-13 66.2
Msa0954130 AT5G07280.1 37.419 155 86 8 2 149 426 576 2.70e-12 65.1
Msa0954130 AT4G26540.1 30.986 142 94 4 21 158 233 374 3.70e-12 64.7
Msa0954130 AT5G27060.3 34.400 125 75 5 11 128 175 299 6.36e-12 63.9
Msa0954130 AT5G27060.1 34.400 125 75 5 11 128 175 299 6.36e-12 63.9
Msa0954130 AT5G27060.2 34.400 125 75 5 11 128 176 300 6.68e-12 63.9
Msa0954130 AT5G56040.2 30.282 142 95 4 21 158 236 377 6.73e-12 63.9
Msa0954130 AT5G56040.1 30.282 142 95 4 21 158 236 377 7.00e-12 63.9
Msa0954130 AT4G26050.1 32.192 146 91 3 2 143 152 293 8.87e-12 63.2
Msa0954130 AT4G20940.1 36.986 146 88 4 22 163 74 219 2.17e-11 62.4
Msa0954130 AT1G72180.1 33.083 133 82 6 28 155 436 566 3.09e-11 62.0
Msa0954130 AT5G07180.2 36.842 133 78 6 22 149 212 343 3.89e-11 61.6
Msa0954130 AT5G07180.1 36.842 133 78 6 22 149 308 439 4.06e-11 61.6
Msa0954130 AT1G73066.1 40.179 112 63 4 21 128 308 419 6.93e-11 60.8
Msa0954130 AT1G35710.1 38.393 112 65 4 21 128 145 256 9.27e-11 60.8
Msa0954130 AT3G56370.1 31.818 154 99 6 20 168 209 361 9.81e-11 60.5

Find 34 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGCCTTCCTGATGAAAT+AGG 0.235623 6_3:+53434170 Msa0954130:CDS
TGTTGGATGAATCAATTAAC+TGG 0.277999 6_3:+53433929 Msa0954130:CDS
AGTAAAATCAGTGAATTTAT+AGG 0.289858 6_3:+53434475 Msa0954130:CDS
AAGGCCAGCCAATTGATTAT+TGG 0.315782 6_3:-53434156 None:intergenic
TCTTGAAAGCCAACAATAAT+AGG 0.326003 6_3:+53434213 Msa0954130:CDS
TTCATTGTACCTATTATTGT+TGG 0.358586 6_3:-53434222 None:intergenic
ATCACGTAACTCACCGGTTC+TGG 0.364497 6_3:-53433996 None:intergenic
TATTAATTCTAATAACTTGT+TGG 0.379499 6_3:+53433912 Msa0954130:CDS
GTAAAATCAGTGAATTTATA+GGG 0.387035 6_3:+53434476 Msa0954130:CDS
ACTACTTTGCCATCTGCGTT+GGG 0.404610 6_3:+53434101 Msa0954130:CDS
CAATAGTTATTTCTGTATCA+TGG 0.413644 6_3:-53435692 None:intergenic
AACTACTTTGCCATCTGCGT+TGG 0.415383 6_3:+53434100 Msa0954130:CDS
GTCAGATGCCCTATTTCATC+AGG 0.417982 6_3:-53434179 None:intergenic
CTGGCCTTCCTGATGAAATA+GGG 0.434149 6_3:+53434171 Msa0954130:CDS
TTGCTTGCAGCTTTCCACCT+TGG 0.442166 6_3:+53435665 Msa0954130:CDS
AACTATTGATATTCTTCGCC+AGG 0.442536 6_3:+53435707 Msa0954130:CDS
TACTATCATTGAACCAGAAC+CGG 0.446260 6_3:+53433983 Msa0954130:CDS
GCATGTCTCCAATAATCAAT+TGG 0.450762 6_3:+53434148 Msa0954130:CDS
TGGGATCGATAACCTCTTTG+AGG 0.453759 6_3:+53434120 Msa0954130:CDS
GGTTCAATGATAGTACTGTT+AGG 0.458087 6_3:-53433975 None:intergenic
CTAAAACTACTGAATGTCTC+TGG 0.466762 6_3:-53434705 None:intergenic
CTTTGCATCTTAGTAACAAT+GGG 0.467481 6_3:+53435610 Msa0954130:CDS
GGGATCGATAACCTCTTTGA+GGG 0.505620 6_3:+53434121 Msa0954130:CDS
GTCTCCAATAATCAATTGGC+TGG 0.520232 6_3:+53434152 Msa0954130:CDS
GCTTTGCATCTTAGTAACAA+TGG 0.556237 6_3:+53435609 Msa0954130:CDS
GAAATGTCGTTCTCTTGTTG+AGG 0.569964 6_3:+53434498 Msa0954130:CDS
AAACAAATAGAATTCCGAGT+TGG 0.580256 6_3:+53435895 Msa0954130:CDS
TTCTGTATCATGGAGATCCA+AGG 0.581361 6_3:-53435682 None:intergenic
GTTATCGATCCCAACGCAGA+TGG 0.592731 6_3:-53434110 None:intergenic
GTTGGATGAATCAATTAACT+GGG 0.623225 6_3:+53433930 Msa0954130:CDS
GATGCCCTATTTCATCAGGA+AGG 0.628283 6_3:-53434175 None:intergenic
AATCTCTAGAAACTCCAACT+CGG 0.645232 6_3:-53435909 None:intergenic
GACATGCAGCTCCCTCAAAG+AGG 0.667609 6_3:-53434132 None:intergenic
TGTATCATGGAGATCCAAGG+TGG 0.690823 6_3:-53435679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAATATATCTTCTTT+TGG - chr6_3:53435132-53435151 None:intergenic 10.0%
!!! TATTATTTTTTTTGCATTTT+CGG + chr6_3:53435142-53435161 Msa0954130:intron 10.0%
!!! AAAAATAATATATCTTCTTT+TGG - chr6_3:53435132-53435151 None:intergenic 10.0%
!!! TATTATTTTTTTTGCATTTT+CGG + chr6_3:53435142-53435161 Msa0954130:intron 10.0%
!!! TATTAATTCTAATAACTTGT+TGG + chr6_3:53433912-53433931 Msa0954130:CDS 15.0%
!!! TTGTAATTTTGAAAAATTTG+AGG - chr6_3:53434861-53434880 None:intergenic 15.0%
!!! TATTAATTCTAATAACTTGT+TGG + chr6_3:53433912-53433931 Msa0954130:CDS 15.0%
!!! TTGTAATTTTGAAAAATTTG+AGG - chr6_3:53434861-53434880 None:intergenic 15.0%
!! TAATGCTAATAAGTTTACAT+AGG + chr6_3:53434319-53434338 Msa0954130:intron 20.0%
!! AGTAAAATCAGTGAATTTAT+AGG + chr6_3:53434475-53434494 Msa0954130:CDS 20.0%
!! GTAAAATCAGTGAATTTATA+GGG + chr6_3:53434476-53434495 Msa0954130:CDS 20.0%
!! ATTTCACTTGTGATTTAATT+TGG - chr6_3:53434595-53434614 None:intergenic 20.0%
!!! GCTTATCAATTTTTTTTTTG+TGG + chr6_3:53434644-53434663 Msa0954130:intron 20.0%
!!! TACAAATCGAAATTTTATCT+TGG + chr6_3:53434936-53434955 Msa0954130:intron 20.0%
!!! ACAAATCGAAATTTTATCTT+GGG + chr6_3:53434937-53434956 Msa0954130:intron 20.0%
!!! ATAAGATGTTACTTTTGATT+AGG + chr6_3:53434963-53434982 Msa0954130:intron 20.0%
!! TTCATTAAAACTTACTTGTT+TGG + chr6_3:53435004-53435023 Msa0954130:intron 20.0%
!! TCATTAAAACTTACTTGTTT+GGG + chr6_3:53435005-53435024 Msa0954130:intron 20.0%
!! TTGAGAACAAATATAACTAA+GGG - chr6_3:53435072-53435091 None:intergenic 20.0%
!! TTTGAGAACAAATATAACTA+AGG - chr6_3:53435073-53435092 None:intergenic 20.0%
!! TACATTCAATATTACACTAA+TGG + chr6_3:53435322-53435341 Msa0954130:intron 20.0%
!!! AATTTACTTTTGAGAAATTG+AGG + chr6_3:53435371-53435390 Msa0954130:intron 20.0%
!!! AAGTATTGCATTTTAATTGA+CGG + chr6_3:53435767-53435786 Msa0954130:intron 20.0%
!! TAATGCTAATAAGTTTACAT+AGG + chr6_3:53434319-53434338 Msa0954130:intron 20.0%
!! AGTAAAATCAGTGAATTTAT+AGG + chr6_3:53434475-53434494 Msa0954130:CDS 20.0%
!! GTAAAATCAGTGAATTTATA+GGG + chr6_3:53434476-53434495 Msa0954130:CDS 20.0%
!! ATTTCACTTGTGATTTAATT+TGG - chr6_3:53434595-53434614 None:intergenic 20.0%
!!! GCTTATCAATTTTTTTTTTG+TGG + chr6_3:53434644-53434663 Msa0954130:intron 20.0%
!!! TACAAATCGAAATTTTATCT+TGG + chr6_3:53434936-53434955 Msa0954130:intron 20.0%
!!! ACAAATCGAAATTTTATCTT+GGG + chr6_3:53434937-53434956 Msa0954130:intron 20.0%
!!! ATAAGATGTTACTTTTGATT+AGG + chr6_3:53434963-53434982 Msa0954130:intron 20.0%
!! TTCATTAAAACTTACTTGTT+TGG + chr6_3:53435004-53435023 Msa0954130:intron 20.0%
!! TCATTAAAACTTACTTGTTT+GGG + chr6_3:53435005-53435024 Msa0954130:intron 20.0%
!! TTGAGAACAAATATAACTAA+GGG - chr6_3:53435072-53435091 None:intergenic 20.0%
!! TTTGAGAACAAATATAACTA+AGG - chr6_3:53435073-53435092 None:intergenic 20.0%
!! TACATTCAATATTACACTAA+TGG + chr6_3:53435322-53435341 Msa0954130:intron 20.0%
!!! AATTTACTTTTGAGAAATTG+AGG + chr6_3:53435371-53435390 Msa0954130:intron 20.0%
!!! AAGTATTGCATTTTAATTGA+CGG + chr6_3:53435767-53435786 Msa0954130:intron 20.0%
! TTCATTGTACCTATTATTGT+TGG - chr6_3:53434225-53434244 None:intergenic 25.0%
! AACTTATTAGCATTAGACAT+TGG - chr6_3:53434314-53434333 None:intergenic 25.0%
!!! TTTTGATAATAACCACTAAG+TGG + chr6_3:53434396-53434415 Msa0954130:intron 25.0%
!! ACTAAGAAACTTTCTGAAAA+AGG - chr6_3:53434556-53434575 None:intergenic 25.0%
!!! TTTTTCAGAAAGTTTCTTAG+TGG + chr6_3:53434555-53434574 Msa0954130:intron 25.0%
!! AATGGTTTAAAACCAATCTT+GGG - chr6_3:53434801-53434820 None:intergenic 25.0%
!! CAAAAGGTACATTTGAATTA+GGG - chr6_3:53435045-53435064 None:intergenic 25.0%
!! ACAAAAGGTACATTTGAATT+AGG - chr6_3:53435046-53435065 None:intergenic 25.0%
! CTTCACTCATTAGATTTAAA+GGG - chr6_3:53435296-53435315 None:intergenic 25.0%
! ACTTCACTCATTAGATTTAA+AGG - chr6_3:53435297-53435316 None:intergenic 25.0%
! ATTCAATATTACACTAATGG+TGG + chr6_3:53435325-53435344 Msa0954130:intron 25.0%
! AACAAATTTGTATCAGTGAT+AGG + chr6_3:53435396-53435415 Msa0954130:intron 25.0%
! ACAAATTTGTATCAGTGATA+GGG + chr6_3:53435397-53435416 Msa0954130:intron 25.0%
!!! CAATAGTTATTTCTGTATCA+TGG - chr6_3:53435695-53435714 None:intergenic 25.0%
! GAAAGACAATACAAAAACTA+AGG - chr6_3:53435739-53435758 None:intergenic 25.0%
!! TTTTCTTTCAATTTGATGGA+TGG + chr6_3:53435836-53435855 Msa0954130:intron 25.0%
!! TTTCTTTCAATTTGATGGAT+GGG + chr6_3:53435837-53435856 Msa0954130:intron 25.0%
! TTCATTGTACCTATTATTGT+TGG - chr6_3:53434225-53434244 None:intergenic 25.0%
! AACTTATTAGCATTAGACAT+TGG - chr6_3:53434314-53434333 None:intergenic 25.0%
!!! TTTTGATAATAACCACTAAG+TGG + chr6_3:53434396-53434415 Msa0954130:intron 25.0%
!! ACTAAGAAACTTTCTGAAAA+AGG - chr6_3:53434556-53434575 None:intergenic 25.0%
!!! TTTTTCAGAAAGTTTCTTAG+TGG + chr6_3:53434555-53434574 Msa0954130:intron 25.0%
!! AATGGTTTAAAACCAATCTT+GGG - chr6_3:53434801-53434820 None:intergenic 25.0%
!! CAAAAGGTACATTTGAATTA+GGG - chr6_3:53435045-53435064 None:intergenic 25.0%
!! ACAAAAGGTACATTTGAATT+AGG - chr6_3:53435046-53435065 None:intergenic 25.0%
! CTTCACTCATTAGATTTAAA+GGG - chr6_3:53435296-53435315 None:intergenic 25.0%
! ACTTCACTCATTAGATTTAA+AGG - chr6_3:53435297-53435316 None:intergenic 25.0%
! ATTCAATATTACACTAATGG+TGG + chr6_3:53435325-53435344 Msa0954130:intron 25.0%
! AACAAATTTGTATCAGTGAT+AGG + chr6_3:53435396-53435415 Msa0954130:intron 25.0%
! ACAAATTTGTATCAGTGATA+GGG + chr6_3:53435397-53435416 Msa0954130:intron 25.0%
!!! CAATAGTTATTTCTGTATCA+TGG - chr6_3:53435695-53435714 None:intergenic 25.0%
! GAAAGACAATACAAAAACTA+AGG - chr6_3:53435739-53435758 None:intergenic 25.0%
!! TTTTCTTTCAATTTGATGGA+TGG + chr6_3:53435836-53435855 Msa0954130:intron 25.0%
!! TTTCTTTCAATTTGATGGAT+GGG + chr6_3:53435837-53435856 Msa0954130:intron 25.0%
TGTTGGATGAATCAATTAAC+TGG + chr6_3:53433929-53433948 Msa0954130:CDS 30.0%
GTTGGATGAATCAATTAACT+GGG + chr6_3:53433930-53433949 Msa0954130:CDS 30.0%
TATATAATCACGTAACTCAC+CGG - chr6_3:53434005-53434024 None:intergenic 30.0%
TCTGAGAGTTAAACAAAAAC+AGG - chr6_3:53434054-53434073 None:intergenic 30.0%
TCTTGAAAGCCAACAATAAT+AGG + chr6_3:53434213-53434232 Msa0954130:CDS 30.0%
ATCAAAAAATTCTCTGCATG+AGG - chr6_3:53434383-53434402 None:intergenic 30.0%
! TAATCTCTTTTTCTTAGACG+AGG + chr6_3:53434617-53434636 Msa0954130:intron 30.0%
!!! CAATTTTTTTTTTGTGGAGC+AGG + chr6_3:53434650-53434669 Msa0954130:intron 30.0%
!!! CAGTAGTTTTAGCAATTTGA+AGG + chr6_3:53434716-53434735 Msa0954130:CDS 30.0%
TTCAATTGTCTTTCCTGATT+AGG - chr6_3:53434760-53434779 None:intergenic 30.0%
TAATCAGGAAAGACAATTGA+AGG + chr6_3:53434759-53434778 Msa0954130:intron 30.0%
! GAATGGTTTAAAACCAATCT+TGG - chr6_3:53434802-53434821 None:intergenic 30.0%
! ACCATTCTTCTGAAAGTAAA+CGG + chr6_3:53434815-53434834 Msa0954130:intron 30.0%
TATAACTAAGGGAAGACAAA+AGG - chr6_3:53435061-53435080 None:intergenic 30.0%
! CTTAGAGTAAACAGTGATTT+TGG - chr6_3:53435211-53435230 None:intergenic 30.0%
AAATTTGTATGAGCAAGCAA+GGG - chr6_3:53435356-53435375 None:intergenic 30.0%
TAAATTTGTATGAGCAAGCA+AGG - chr6_3:53435357-53435376 None:intergenic 30.0%
!! GCTAGTATCTGAGATATTTT+TGG + chr6_3:53435456-53435475 Msa0954130:intron 30.0%
ATCACATGCTCAAAGTAAAA+TGG + chr6_3:53435520-53435539 Msa0954130:intron 30.0%
! GCAAGAAAAGTTAGCATTTT+TGG - chr6_3:53435558-53435577 None:intergenic 30.0%
CTTTGCATCTTAGTAACAAT+GGG + chr6_3:53435610-53435629 Msa0954130:CDS 30.0%
!!! CAAGTCTTGAATAGTTTTGA+TGG - chr6_3:53435648-53435667 None:intergenic 30.0%
GGCTTATCATAGTTATTCAT+TGG + chr6_3:53435788-53435807 Msa0954130:intron 30.0%
CATGACAGCAAAATATATGT+GGG + chr6_3:53435813-53435832 Msa0954130:intron 30.0%
! TGGGTTTTCTTTCAATTTGA+TGG + chr6_3:53435832-53435851 Msa0954130:intron 30.0%
AAACAAATAGAATTCCGAGT+TGG + chr6_3:53435895-53435914 Msa0954130:CDS 30.0%
!! GTTTCTAGAGATTTTGATGA+AGG + chr6_3:53435919-53435938 Msa0954130:CDS 30.0%
TGTTGGATGAATCAATTAAC+TGG + chr6_3:53433929-53433948 Msa0954130:CDS 30.0%
GTTGGATGAATCAATTAACT+GGG + chr6_3:53433930-53433949 Msa0954130:CDS 30.0%
TATATAATCACGTAACTCAC+CGG - chr6_3:53434005-53434024 None:intergenic 30.0%
TCTGAGAGTTAAACAAAAAC+AGG - chr6_3:53434054-53434073 None:intergenic 30.0%
TCTTGAAAGCCAACAATAAT+AGG + chr6_3:53434213-53434232 Msa0954130:CDS 30.0%
ATCAAAAAATTCTCTGCATG+AGG - chr6_3:53434383-53434402 None:intergenic 30.0%
! TAATCTCTTTTTCTTAGACG+AGG + chr6_3:53434617-53434636 Msa0954130:intron 30.0%
!!! CAATTTTTTTTTTGTGGAGC+AGG + chr6_3:53434650-53434669 Msa0954130:intron 30.0%
!!! CAGTAGTTTTAGCAATTTGA+AGG + chr6_3:53434716-53434735 Msa0954130:CDS 30.0%
TTCAATTGTCTTTCCTGATT+AGG - chr6_3:53434760-53434779 None:intergenic 30.0%
TAATCAGGAAAGACAATTGA+AGG + chr6_3:53434759-53434778 Msa0954130:intron 30.0%
! GAATGGTTTAAAACCAATCT+TGG - chr6_3:53434802-53434821 None:intergenic 30.0%
! ACCATTCTTCTGAAAGTAAA+CGG + chr6_3:53434815-53434834 Msa0954130:intron 30.0%
TATAACTAAGGGAAGACAAA+AGG - chr6_3:53435061-53435080 None:intergenic 30.0%
! CTTAGAGTAAACAGTGATTT+TGG - chr6_3:53435211-53435230 None:intergenic 30.0%
AAATTTGTATGAGCAAGCAA+GGG - chr6_3:53435356-53435375 None:intergenic 30.0%
TAAATTTGTATGAGCAAGCA+AGG - chr6_3:53435357-53435376 None:intergenic 30.0%
!! GCTAGTATCTGAGATATTTT+TGG + chr6_3:53435456-53435475 Msa0954130:intron 30.0%
ATCACATGCTCAAAGTAAAA+TGG + chr6_3:53435520-53435539 Msa0954130:intron 30.0%
! GCAAGAAAAGTTAGCATTTT+TGG - chr6_3:53435558-53435577 None:intergenic 30.0%
CTTTGCATCTTAGTAACAAT+GGG + chr6_3:53435610-53435629 Msa0954130:CDS 30.0%
!!! CAAGTCTTGAATAGTTTTGA+TGG - chr6_3:53435648-53435667 None:intergenic 30.0%
GGCTTATCATAGTTATTCAT+TGG + chr6_3:53435788-53435807 Msa0954130:intron 30.0%
CATGACAGCAAAATATATGT+GGG + chr6_3:53435813-53435832 Msa0954130:intron 30.0%
! TGGGTTTTCTTTCAATTTGA+TGG + chr6_3:53435832-53435851 Msa0954130:intron 30.0%
AAACAAATAGAATTCCGAGT+TGG + chr6_3:53435895-53435914 Msa0954130:CDS 30.0%
!! GTTTCTAGAGATTTTGATGA+AGG + chr6_3:53435919-53435938 Msa0954130:CDS 30.0%
GGTTCAATGATAGTACTGTT+AGG - chr6_3:53433978-53433997 None:intergenic 35.0%
TACTATCATTGAACCAGAAC+CGG + chr6_3:53433983-53434002 Msa0954130:CDS 35.0%
GCATGTCTCCAATAATCAAT+TGG + chr6_3:53434148-53434167 Msa0954130:CDS 35.0%
TTGATGTGTCTATCTTTCTC+AGG + chr6_3:53434449-53434468 Msa0954130:intron 35.0%
CTAAAACTACTGAATGTCTC+TGG - chr6_3:53434708-53434727 None:intergenic 35.0%
TGTTTCCTTATCACCTAATC+AGG + chr6_3:53434744-53434763 Msa0954130:intron 35.0%
TCTTTCCTGATTAGGTGATA+AGG - chr6_3:53434752-53434771 None:intergenic 35.0%
! TTTCTTTTTCCACCCAAGAT+TGG + chr6_3:53434786-53434805 Msa0954130:intron 35.0%
ACCGTTTACTTTCAGAAGAA+TGG - chr6_3:53434819-53434838 None:intergenic 35.0%
GTACATTTGAATTAGGGCAA+TGG - chr6_3:53435039-53435058 None:intergenic 35.0%
! TTTTGGTCCCTAAATATGCA+AGG - chr6_3:53435194-53435213 None:intergenic 35.0%
CTGAAGAGAAGATGAGATAA+AGG - chr6_3:53435259-53435278 None:intergenic 35.0%
GCTTTGCATCTTAGTAACAA+TGG + chr6_3:53435609-53435628 Msa0954130:CDS 35.0%
AACTATTGATATTCTTCGCC+AGG + chr6_3:53435707-53435726 Msa0954130:CDS 35.0%
GCATGACAGCAAAATATATG+TGG + chr6_3:53435812-53435831 Msa0954130:intron 35.0%
! AATCTCTAGAAACTCCAACT+CGG - chr6_3:53435912-53435931 None:intergenic 35.0%
GGTTCAATGATAGTACTGTT+AGG - chr6_3:53433978-53433997 None:intergenic 35.0%
TACTATCATTGAACCAGAAC+CGG + chr6_3:53433983-53434002 Msa0954130:CDS 35.0%
GCATGTCTCCAATAATCAAT+TGG + chr6_3:53434148-53434167 Msa0954130:CDS 35.0%
TTGATGTGTCTATCTTTCTC+AGG + chr6_3:53434449-53434468 Msa0954130:intron 35.0%
CTAAAACTACTGAATGTCTC+TGG - chr6_3:53434708-53434727 None:intergenic 35.0%
TGTTTCCTTATCACCTAATC+AGG + chr6_3:53434744-53434763 Msa0954130:intron 35.0%
TCTTTCCTGATTAGGTGATA+AGG - chr6_3:53434752-53434771 None:intergenic 35.0%
! TTTCTTTTTCCACCCAAGAT+TGG + chr6_3:53434786-53434805 Msa0954130:intron 35.0%
ACCGTTTACTTTCAGAAGAA+TGG - chr6_3:53434819-53434838 None:intergenic 35.0%
GTACATTTGAATTAGGGCAA+TGG - chr6_3:53435039-53435058 None:intergenic 35.0%
! TTTTGGTCCCTAAATATGCA+AGG - chr6_3:53435194-53435213 None:intergenic 35.0%
CTGAAGAGAAGATGAGATAA+AGG - chr6_3:53435259-53435278 None:intergenic 35.0%
GCTTTGCATCTTAGTAACAA+TGG + chr6_3:53435609-53435628 Msa0954130:CDS 35.0%
AACTATTGATATTCTTCGCC+AGG + chr6_3:53435707-53435726 Msa0954130:CDS 35.0%
GCATGACAGCAAAATATATG+TGG + chr6_3:53435812-53435831 Msa0954130:intron 35.0%
! AATCTCTAGAAACTCCAACT+CGG - chr6_3:53435912-53435931 None:intergenic 35.0%
AACTCTCAGAAAGCGACAAA+TGG + chr6_3:53434064-53434083 Msa0954130:intron 40.0%
GTCTCCAATAATCAATTGGC+TGG + chr6_3:53434152-53434171 Msa0954130:CDS 40.0%
AAGGCCAGCCAATTGATTAT+TGG - chr6_3:53434159-53434178 None:intergenic 40.0%
!!! ACCACTAAGTGGTGTTGTTT+TGG + chr6_3:53434407-53434426 Msa0954130:intron 40.0%
ACCAAAACAACACCACTTAG+TGG - chr6_3:53434411-53434430 None:intergenic 40.0%
GAAATGTCGTTCTCTTGTTG+AGG + chr6_3:53434498-53434517 Msa0954130:CDS 40.0%
TCAGGAAAGACAATTGAAGG+TGG + chr6_3:53434762-53434781 Msa0954130:intron 40.0%
! GGTTTAAAACCAATCTTGGG+TGG - chr6_3:53434798-53434817 None:intergenic 40.0%
! TTTGCATTTTCGGTACACTC+AGG + chr6_3:53435152-53435171 Msa0954130:intron 40.0%
! TTGCATTTTCGGTACACTCA+GGG + chr6_3:53435153-53435172 Msa0954130:intron 40.0%
TGAAACCGCCTTGCATATTT+AGG + chr6_3:53435183-53435202 Msa0954130:intron 40.0%
GAAACCGCCTTGCATATTTA+GGG + chr6_3:53435184-53435203 Msa0954130:intron 40.0%
TCAGTGATAGGGAAAAGCAA+AGG + chr6_3:53435408-53435427 Msa0954130:intron 40.0%
GGTCACAAATGTGGAGTATA+AGG - chr6_3:53435580-53435599 None:intergenic 40.0%
CTGCATAATGGTCACAAATG+TGG - chr6_3:53435589-53435608 None:intergenic 40.0%
CACATTTGTGACCATTATGC+AGG + chr6_3:53435587-53435606 Msa0954130:intron 40.0%
AAGATGCAAAGCCTGCATAA+TGG - chr6_3:53435601-53435620 None:intergenic 40.0%
TTCTGTATCATGGAGATCCA+AGG - chr6_3:53435685-53435704 None:intergenic 40.0%
AACTCTCAGAAAGCGACAAA+TGG + chr6_3:53434064-53434083 Msa0954130:intron 40.0%
GTCTCCAATAATCAATTGGC+TGG + chr6_3:53434152-53434171 Msa0954130:CDS 40.0%
AAGGCCAGCCAATTGATTAT+TGG - chr6_3:53434159-53434178 None:intergenic 40.0%
!!! ACCACTAAGTGGTGTTGTTT+TGG + chr6_3:53434407-53434426 Msa0954130:intron 40.0%
ACCAAAACAACACCACTTAG+TGG - chr6_3:53434411-53434430 None:intergenic 40.0%
GAAATGTCGTTCTCTTGTTG+AGG + chr6_3:53434498-53434517 Msa0954130:CDS 40.0%
TCAGGAAAGACAATTGAAGG+TGG + chr6_3:53434762-53434781 Msa0954130:intron 40.0%
! GGTTTAAAACCAATCTTGGG+TGG - chr6_3:53434798-53434817 None:intergenic 40.0%
! TTTGCATTTTCGGTACACTC+AGG + chr6_3:53435152-53435171 Msa0954130:intron 40.0%
! TTGCATTTTCGGTACACTCA+GGG + chr6_3:53435153-53435172 Msa0954130:intron 40.0%
TGAAACCGCCTTGCATATTT+AGG + chr6_3:53435183-53435202 Msa0954130:intron 40.0%
GAAACCGCCTTGCATATTTA+GGG + chr6_3:53435184-53435203 Msa0954130:intron 40.0%
TCAGTGATAGGGAAAAGCAA+AGG + chr6_3:53435408-53435427 Msa0954130:intron 40.0%
GGTCACAAATGTGGAGTATA+AGG - chr6_3:53435580-53435599 None:intergenic 40.0%
CTGCATAATGGTCACAAATG+TGG - chr6_3:53435589-53435608 None:intergenic 40.0%
CACATTTGTGACCATTATGC+AGG + chr6_3:53435587-53435606 Msa0954130:intron 40.0%
AAGATGCAAAGCCTGCATAA+TGG - chr6_3:53435601-53435620 None:intergenic 40.0%
TTCTGTATCATGGAGATCCA+AGG - chr6_3:53435685-53435704 None:intergenic 40.0%
AACTACTTTGCCATCTGCGT+TGG + chr6_3:53434100-53434119 Msa0954130:CDS 45.0%
ACTACTTTGCCATCTGCGTT+GGG + chr6_3:53434101-53434120 Msa0954130:CDS 45.0%
TGGGATCGATAACCTCTTTG+AGG + chr6_3:53434120-53434139 Msa0954130:CDS 45.0%
GGGATCGATAACCTCTTTGA+GGG + chr6_3:53434121-53434140 Msa0954130:CDS 45.0%
! CTGGCCTTCCTGATGAAATA+GGG + chr6_3:53434171-53434190 Msa0954130:CDS 45.0%
GATGCCCTATTTCATCAGGA+AGG - chr6_3:53434178-53434197 None:intergenic 45.0%
GTCAGATGCCCTATTTCATC+AGG - chr6_3:53434182-53434201 None:intergenic 45.0%
GTCGTTCTCTTGTTGAGGTA+TGG + chr6_3:53434503-53434522 Msa0954130:intron 45.0%
TTCCTTAACCTATGCCCTGA+GGG - chr6_3:53434914-53434933 None:intergenic 45.0%
ATTCCTTAACCTATGCCCTG+AGG - chr6_3:53434915-53434934 None:intergenic 45.0%
GTGTCTTAGAGCAGTCACTT+TGG + chr6_3:53435094-53435113 Msa0954130:intron 45.0%
TGGTCCCTAAATATGCAAGG+CGG - chr6_3:53435191-53435210 None:intergenic 45.0%
TGTATCATGGAGATCCAAGG+TGG - chr6_3:53435682-53435701 None:intergenic 45.0%
CAAAAACTAAGGTGCACACC+TGG - chr6_3:53435728-53435747 None:intergenic 45.0%
AACTACTTTGCCATCTGCGT+TGG + chr6_3:53434100-53434119 Msa0954130:CDS 45.0%
ACTACTTTGCCATCTGCGTT+GGG + chr6_3:53434101-53434120 Msa0954130:CDS 45.0%
TGGGATCGATAACCTCTTTG+AGG + chr6_3:53434120-53434139 Msa0954130:CDS 45.0%
GGGATCGATAACCTCTTTGA+GGG + chr6_3:53434121-53434140 Msa0954130:CDS 45.0%
! CTGGCCTTCCTGATGAAATA+GGG + chr6_3:53434171-53434190 Msa0954130:CDS 45.0%
GATGCCCTATTTCATCAGGA+AGG - chr6_3:53434178-53434197 None:intergenic 45.0%
GTCAGATGCCCTATTTCATC+AGG - chr6_3:53434182-53434201 None:intergenic 45.0%
GTCGTTCTCTTGTTGAGGTA+TGG + chr6_3:53434503-53434522 Msa0954130:intron 45.0%
TTCCTTAACCTATGCCCTGA+GGG - chr6_3:53434914-53434933 None:intergenic 45.0%
ATTCCTTAACCTATGCCCTG+AGG - chr6_3:53434915-53434934 None:intergenic 45.0%
GTGTCTTAGAGCAGTCACTT+TGG + chr6_3:53435094-53435113 Msa0954130:intron 45.0%
TGGTCCCTAAATATGCAAGG+CGG - chr6_3:53435191-53435210 None:intergenic 45.0%
TGTATCATGGAGATCCAAGG+TGG - chr6_3:53435682-53435701 None:intergenic 45.0%
CAAAAACTAAGGTGCACACC+TGG - chr6_3:53435728-53435747 None:intergenic 45.0%
!! ATCACGTAACTCACCGGTTC+TGG - chr6_3:53433999-53434018 None:intergenic 50.0%
GTTATCGATCCCAACGCAGA+TGG - chr6_3:53434113-53434132 None:intergenic 50.0%
!! GCTGGCCTTCCTGATGAAAT+AGG + chr6_3:53434170-53434189 Msa0954130:CDS 50.0%
TTGCTTGCAGCTTTCCACCT+TGG + chr6_3:53435665-53435684 Msa0954130:CDS 50.0%
!! ATCACGTAACTCACCGGTTC+TGG - chr6_3:53433999-53434018 None:intergenic 50.0%
GTTATCGATCCCAACGCAGA+TGG - chr6_3:53434113-53434132 None:intergenic 50.0%
!! GCTGGCCTTCCTGATGAAAT+AGG + chr6_3:53434170-53434189 Msa0954130:CDS 50.0%
TTGCTTGCAGCTTTCCACCT+TGG + chr6_3:53435665-53435684 Msa0954130:CDS 50.0%
GACATGCAGCTCCCTCAAAG+AGG - chr6_3:53434135-53434154 None:intergenic 55.0%
TCTTGCTAACCAGTGCCCTC+AGG + chr6_3:53434896-53434915 Msa0954130:intron 55.0%
CTTGCTAACCAGTGCCCTCA+GGG + chr6_3:53434897-53434916 Msa0954130:intron 55.0%
TGCCCTCAGGGCATAGGTTA+AGG + chr6_3:53434909-53434928 Msa0954130:intron 55.0%
GACATGCAGCTCCCTCAAAG+AGG - chr6_3:53434135-53434154 None:intergenic 55.0%
TCTTGCTAACCAGTGCCCTC+AGG + chr6_3:53434896-53434915 Msa0954130:intron 55.0%
CTTGCTAACCAGTGCCCTCA+GGG + chr6_3:53434897-53434916 Msa0954130:intron 55.0%
TGCCCTCAGGGCATAGGTTA+AGG + chr6_3:53434909-53434928 Msa0954130:intron 55.0%
AACCAGTGCCCTCAGGGCAT+AGG + chr6_3:53434903-53434922 Msa0954130:intron 60.0%
! AACCTATGCCCTGAGGGCAC+TGG - chr6_3:53434908-53434927 None:intergenic 60.0%
AACCAGTGCCCTCAGGGCAT+AGG + chr6_3:53434903-53434922 Msa0954130:intron 60.0%
! AACCTATGCCCTGAGGGCAC+TGG - chr6_3:53434908-53434927 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 53433895 53435957 53433895 ID=Msa0954130;Name=Msa0954130
chr6_3 mRNA 53433895 53435957 53433895 ID=Msa0954130-mRNA-1;Parent=Msa0954130;Name=Msa0954130-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|0|0|1|1|1|6|0|192
chr6_3 exon 53433895 53434004 53433895 ID=Msa0954130-mRNA-1:exon:11188;Parent=Msa0954130-mRNA-1
chr6_3 exon 53434097 53434234 53434097 ID=Msa0954130-mRNA-1:exon:11189;Parent=Msa0954130-mRNA-1
chr6_3 exon 53434471 53434519 53434471 ID=Msa0954130-mRNA-1:exon:11190;Parent=Msa0954130-mRNA-1
chr6_3 exon 53434672 53434737 53434672 ID=Msa0954130-mRNA-1:exon:11191;Parent=Msa0954130-mRNA-1
chr6_3 exon 53435609 53435730 53435609 ID=Msa0954130-mRNA-1:exon:11192;Parent=Msa0954130-mRNA-1
chr6_3 exon 53435864 53435957 53435864 ID=Msa0954130-mRNA-1:exon:11193;Parent=Msa0954130-mRNA-1
chr6_3 CDS 53433895 53434004 53433895 ID=Msa0954130-mRNA-1:cds;Parent=Msa0954130-mRNA-1
chr6_3 CDS 53434097 53434234 53434097 ID=Msa0954130-mRNA-1:cds;Parent=Msa0954130-mRNA-1
chr6_3 CDS 53434471 53434519 53434471 ID=Msa0954130-mRNA-1:cds;Parent=Msa0954130-mRNA-1
chr6_3 CDS 53434672 53434737 53434672 ID=Msa0954130-mRNA-1:cds;Parent=Msa0954130-mRNA-1
chr6_3 CDS 53435609 53435730 53435609 ID=Msa0954130-mRNA-1:cds;Parent=Msa0954130-mRNA-1
chr6_3 CDS 53435864 53435957 53435864 ID=Msa0954130-mRNA-1:cds;Parent=Msa0954130-mRNA-1
Gene Sequence

>Msa0954130

ATGTTGCAGAAACTATTTATTAATTCTAATAACTTGTTGGATGAATCAATTAACTGGGAAGCACTGTCAAATCTGAAGTACCTAACAGTACTATCATTGAACCAGAACCGTTTAACTACTTTGCCATCTGCGTTGGGATCGATAACCTCTTTGAGGGAGCTGCATGTCTCCAATAATCAATTGGCTGGCCTTCCTGATGAAATAGGGCATCTGACAAAGTTAGAAGTCTTGAAAGCCAACAATAATAGGATGAGTAAAATCAGTGAATTTATAGGGAAATGTCGTTCTCTTGTTGAGGTTGATTTCTCATCAAATTTTCTATCAGAGTTGCCAGAGACATTCAGTAGTTTTAGCAATTTGAAGGCTTTGCATCTTAGTAACAATGGGATGAAATCTCTGCCATCAAAACTATTCAAGACTTGCTTGCAGCTTTCCACCTTGGATCTCCATGATACAGAAATAACTATTGATATTCTTCGCCAGGTTTTTGATGAACGTCGTCGCTCAAAGCATCAGAAACAAATAGAATTCCGAGTTGGAGTTTCTAGAGATTTTGATGAAGGTGCTGATAAAAACTAA

Protein sequence

>Msa0954130

MLQKLFINSNNLLDESINWEALSNLKYLTVLSLNQNRLTTLPSALGSITSLRELHVSNNQLAGLPDEIGHLTKLEVLKANNNRMSKISEFIGKCRSLVEVDFSSNFLSELPETFSSFSNLKALHLSNNGMKSLPSKLFKTCLQLSTLDLHDTEITIDILRQVFDERRRSKHQKQIEFRVGVSRDFDEGADKN*