Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992350 | XP_003620731.1 | 97.386 | 459 | 12 | 0 | 1 | 459 | 1 | 459 | 0.0 | 940 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992350 | sp|P54873|HMCS_ARATH | 77.162 | 451 | 101 | 1 | 5 | 453 | 1 | 451 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992350 | G7KQF5 | 97.386 | 459 | 12 | 0 | 1 | 459 | 1 | 459 | 0.0 | 940 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa0992350 | -0.838526 | 2.728559e-57 | -8.615850e-47 |
| Msa0658570 | Msa0992350 | 0.810486 | 1.125312e-50 | -8.615850e-47 |
| Msa0719490 | Msa0992350 | -0.802419 | 5.660782e-49 | -8.615850e-47 |
| Msa0736060 | Msa0992350 | 0.809416 | 1.912942e-50 | -8.615850e-47 |
| Msa0777930 | Msa0992350 | 0.801731 | 7.842241e-49 | -8.615850e-47 |
| Msa0789690 | Msa0992350 | 0.836555 | 8.735516e-57 | -8.615850e-47 |
| Msa0802470 | Msa0992350 | -0.813844 | 2.084097e-51 | -8.615850e-47 |
| Msa0832370 | Msa0992350 | 0.808002 | 3.836508e-50 | -8.615850e-47 |
| Msa0133980 | Msa0992350 | -0.800292 | 1.543076e-48 | -8.615850e-47 |
| Msa0190830 | Msa0992350 | 0.819783 | 9.688920e-53 | -8.615850e-47 |
| Msa0226250 | Msa0992350 | 0.803641 | 3.164375e-49 | -8.615850e-47 |
| Msa0233190 | Msa0992350 | 0.804502 | 2.095148e-49 | -8.615850e-47 |
| Msa0388960 | Msa0992350 | 0.804890 | 1.738208e-49 | -8.615850e-47 |
| Msa0448550 | Msa0992350 | -0.821624 | 3.657988e-53 | -8.615850e-47 |
| Msa0466390 | Msa0992350 | 0.823747 | 1.172952e-53 | -8.615850e-47 |
| Msa0992350 | Msa1008490 | 0.818317 | 2.087439e-52 | -8.615850e-47 |
| Msa0992350 | Msa1025830 | 0.808286 | 3.337896e-50 | -8.615850e-47 |
| Msa0992350 | Msa1026500 | 0.815638 | 8.345690e-52 | -8.615850e-47 |
| Msa0992350 | Msa1069310 | 0.815196 | 1.046570e-51 | -8.615850e-47 |
| Msa0992350 | Msa1073110 | -0.808647 | 2.794154e-50 | -8.615850e-47 |
| Msa0992350 | Msa1075220 | -0.816754 | 4.698909e-52 | -8.615850e-47 |
| Msa0992350 | Msa1083410 | 0.871262 | 7.813662e-67 | -8.615850e-47 |
| Msa0992350 | Msa1101620 | 0.804017 | 2.643181e-49 | -8.615850e-47 |
| Msa0992350 | Msa1111760 | 0.818417 | 1.982188e-52 | -8.615850e-47 |
| Msa0992350 | Msa1128160 | 0.820712 | 5.932895e-53 | -8.615850e-47 |
| Msa0992350 | Msa1154070 | 0.817996 | 2.467582e-52 | -8.615850e-47 |
| Msa0992350 | Msa1162550 | -0.812801 | 3.531775e-51 | -8.615850e-47 |
| Msa0992350 | Msa1165360 | 0.820573 | 6.388270e-53 | -8.615850e-47 |
| Msa0992350 | Msa1229600 | 0.802915 | 4.471859e-49 | -8.615850e-47 |
| Msa0992350 | Msa1271300 | 0.802363 | 5.813629e-49 | -8.615850e-47 |
| Msa0992350 | Msa1322890 | 0.805499 | 1.296132e-49 | -8.615850e-47 |
| Msa0992350 | Msa1376890 | 0.804429 | 2.169922e-49 | -8.615850e-47 |
| Msa0992350 | Msa1378760 | 0.810469 | 1.135130e-50 | -8.615850e-47 |
| Msa0992350 | Msa1393410 | 0.807346 | 5.286087e-50 | -8.615850e-47 |
| Msa0992350 | Msa1411090 | 0.804900 | 1.729664e-49 | -8.615850e-47 |
| Msa0992350 | Msa1423880 | 0.814203 | 1.736745e-51 | -8.615850e-47 |
| Msa0992350 | Msa1428310 | 0.806138 | 9.515541e-50 | -8.615850e-47 |
| Msa0992350 | Msa1431430 | 0.821995 | 3.000979e-53 | -8.615850e-47 |
| Msa0992350 | Msa1435420 | 0.806505 | 7.961767e-50 | -8.615850e-47 |
| Msa0992350 | Msa1465900 | 0.812502 | 4.104854e-51 | -8.615850e-47 |
| Msa0992350 | Msa1466810 | 0.846748 | 1.787586e-59 | -8.615850e-47 |
| Msa0266000 | Msa0992350 | -0.810023 | 1.416116e-50 | -8.615850e-47 |
| Msa0294950 | Msa0992350 | 0.810133 | 1.341038e-50 | -8.615850e-47 |
| Msa0311580 | Msa0992350 | 0.831672 | 1.461710e-55 | -8.615850e-47 |
| Msa0331920 | Msa0992350 | 0.815491 | 8.998146e-52 | -8.615850e-47 |
| Msa0338110 | Msa0992350 | 0.804077 | 2.568860e-49 | -8.615850e-47 |
| Msa0533070 | Msa0992350 | 0.810061 | 1.390114e-50 | -8.615850e-47 |
| Msa0548280 | Msa0992350 | -0.808887 | 2.482888e-50 | -8.615850e-47 |
| Msa0564510 | Msa0992350 | 0.807016 | 6.210844e-50 | -8.615850e-47 |
| Msa0892230 | Msa0992350 | 0.881706 | 1.920694e-70 | -8.615850e-47 |
| Msa0965600 | Msa0992350 | 0.820114 | 8.136067e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992350 | MtrunA17_Chr6g0474311 | 97.386 | 459 | 12 | 0 | 1 | 459 | 1 | 459 | 0.0 | 940 |
| Msa0992350 | MtrunA17_Chr5g0398151 | 78.022 | 455 | 100 | 0 | 1 | 455 | 1 | 455 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0992350 | AT4G11820.2 | 77.162 | 451 | 101 | 1 | 5 | 453 | 1 | 451 | 0.0 | 746 |
| Msa0992350 | AT4G11820.3 | 76.010 | 396 | 93 | 1 | 60 | 453 | 1 | 396 | 0.0 | 641 |
| Msa0992350 | AT4G11820.1 | 76.010 | 396 | 93 | 1 | 60 | 453 | 1 | 396 | 0.0 | 641 |
Find 102 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGACAGTGTTAAATGTTTC+TGG | 0.183733 | 6_4:-60564205 | Msa0992350:CDS |
| TAAATGTGCAGGTAGGTAAA+AGG | 0.219590 | 6_4:-60564321 | Msa0992350:intron |
| CATATGATTACCTTGTTATA+TGG | 0.231142 | 6_4:+60565668 | None:intergenic |
| CACAATGTTCAACAAGTTAA+AGG | 0.249649 | 6_4:+60564225 | None:intergenic |
| CTTTGTTCAATTGTGTGAAT+TGG | 0.279091 | 6_4:-60567193 | Msa0992350:CDS |
| CTGCTGTATTTGATGCCTTA+TGG | 0.307858 | 6_4:-60563656 | Msa0992350:three_prime_UTR |
| GGCACTTGATTCTTGCTATC+AGG | 0.314542 | 6_4:-60565838 | Msa0992350:CDS |
| ATCTAGTGTTGTGGTGGATT+TGG | 0.330141 | 6_4:+60569362 | None:intergenic |
| TTGAGAAAAGTAGTTTGTTA+TGG | 0.334932 | 6_4:-60563684 | Msa0992350:three_prime_UTR |
| CCCTCCCACTTGTGTTCAAC+AGG | 0.344509 | 6_4:-60569220 | Msa0992350:intron |
| GGGTATTCACTTGCAAGATT+TGG | 0.347603 | 6_4:+60566778 | None:intergenic |
| AAAATCATGGAGCACCATTA+TGG | 0.348395 | 6_4:-60563881 | Msa0992350:CDS |
| GCTGCAATTGCAATGCTTGT+AGG | 0.354392 | 6_4:-60566874 | Msa0992350:CDS |
| GCGAGGATTCCAACATTGTT+GGG | 0.367851 | 6_4:+60569258 | None:intergenic |
| GACTGTAACTACTTACTTCC+AGG | 0.372332 | 6_4:-60563833 | Msa0992350:CDS |
| TCACCGGTTAAGGATGAATA+AGG | 0.372882 | 6_4:+60564909 | None:intergenic |
| AAAATATAAAAGTATGTTGT+TGG | 0.375421 | 6_4:-60563510 | Msa0992350:three_prime_UTR |
| ATTTGGCTTGTAAAAGTCAT+AGG | 0.378305 | 6_4:+60566795 | None:intergenic |
| ACATGTTGCCAACTTGCTTT+GGG | 0.379546 | 6_4:+60564490 | None:intergenic |
| ATCAAGTGCCATGAGATAAC+AGG | 0.388511 | 6_4:+60565851 | None:intergenic |
| TACATGTTGCCAACTTGCTT+TGG | 0.396808 | 6_4:+60564489 | None:intergenic |
| AGTTTGCTTTCAAAAGCAAT+AGG | 0.408882 | 6_4:+60566841 | None:intergenic |
| TGCAATTGCAGCTGCTCCTC+CGG | 0.410216 | 6_4:+60566885 | None:intergenic |
| CCAAAGTTGATTCCATGTAT+AGG | 0.410814 | 6_4:-60563796 | Msa0992350:CDS |
| TTTCTCGTGTAGGTTGTTGA+TGG | 0.415131 | 6_4:-60565888 | Msa0992350:intron |
| CTGCAATTGCAATGCTTGTA+GGG | 0.421131 | 6_4:-60566873 | Msa0992350:CDS |
| AGTTCATGGGACGGACGTTA+TGG | 0.430701 | 6_4:-60567161 | Msa0992350:CDS |
| GCACCTTATTCATCCTTAAC+CGG | 0.431079 | 6_4:-60564912 | Msa0992350:CDS |
| AAATGTGCAGGTAGGTAAAA+GGG | 0.431259 | 6_4:-60564320 | Msa0992350:intron |
| CAAAGTCCTTTCCACCATAA+TGG | 0.433981 | 6_4:+60563867 | None:intergenic |
| TTTGTTCAATTGTGTGAATT+GGG | 0.438040 | 6_4:-60567192 | Msa0992350:CDS |
| TGTGTTTGAATTGAAATGAA+TGG | 0.442777 | 6_4:+60569455 | None:intergenic |
| GTGATTCTGGTAGGAAGCTT+TGG | 0.443002 | 6_4:-60568571 | Msa0992350:intron |
| ATAACTATAGTTTGATCAGT+TGG | 0.444119 | 6_4:-60563572 | Msa0992350:three_prime_UTR |
| ACAATGTTCAACAAGTTAAA+GGG | 0.444456 | 6_4:+60564226 | None:intergenic |
| TCAAAAGCAATAGGAGCATC+TGG | 0.448706 | 6_4:+60566850 | None:intergenic |
| AATATTGATCCGAAGAAAAT+CGG | 0.449119 | 6_4:-60567994 | Msa0992350:CDS |
| CCTATACATGGAATCAACTT+TGG | 0.458961 | 6_4:+60563796 | None:intergenic |
| AGCGAGGATTCCAACATTGT+TGG | 0.467020 | 6_4:+60569257 | None:intergenic |
| ATAAGGTGCTAGAGCTTGCC+TGG | 0.468564 | 6_4:+60564926 | None:intergenic |
| AGGGATGTTGACTTTCTTGA+AGG | 0.470554 | 6_4:+60564245 | None:intergenic |
| AGGGTAGTTATGTTCTCATA+TGG | 0.473249 | 6_4:-60564301 | Msa0992350:CDS |
| TGGACTTGGACAGGATTGTA+TGG | 0.475047 | 6_4:-60568511 | Msa0992350:CDS |
| GAAGAAAATCGGTCGATTGG+AGG | 0.479321 | 6_4:-60567983 | Msa0992350:CDS |
| GAAGGACCGGCTCGTCCTAC+CGG | 0.488904 | 6_4:-60566904 | Msa0992350:CDS |
| CTCATGATGGTGTGAGCAAA+GGG | 0.493636 | 6_4:-60568545 | Msa0992350:CDS |
| GGTAGGACGAGCCGGTCCTT+CGG | 0.494265 | 6_4:+60566906 | None:intergenic |
| ATATACCATTGGACTTGGAC+AGG | 0.504539 | 6_4:-60568520 | Msa0992350:CDS |
| AACTAGAATAAATAGCCATA+AGG | 0.509192 | 6_4:+60563641 | None:intergenic |
| TCTTCACTCCCCAACAATGT+TGG | 0.511162 | 6_4:-60569267 | Msa0992350:CDS |
| TCCGAAGAAAATCGGTCGAT+TGG | 0.512915 | 6_4:-60567986 | Msa0992350:CDS |
| GCTCCTCCGGTAGGACGAGC+CGG | 0.515696 | 6_4:+60566898 | None:intergenic |
| TTGACTTTCTTGAAGGCGGA+AGG | 0.518913 | 6_4:+60564252 | None:intergenic |
| TCAAAGTCGTGATCTTGAAA+AGG | 0.519954 | 6_4:-60564877 | Msa0992350:intron |
| GAAGTAAGTAGTTACAGTCT+TGG | 0.520987 | 6_4:+60563837 | None:intergenic |
| TCAGGTATATGCCGAAGGAC+CGG | 0.521233 | 6_4:-60566917 | Msa0992350:intron |
| GTTATGTTCTCATATGGAAG+TGG | 0.521574 | 6_4:-60564295 | Msa0992350:CDS |
| GGGAAATATACCATTGGACT+TGG | 0.523041 | 6_4:-60568525 | Msa0992350:CDS |
| TCACAATAAGCACGACTCAC+TGG | 0.531942 | 6_4:-60564430 | Msa0992350:intron |
| ACATTAATCCCAAAGCAAGT+TGG | 0.536278 | 6_4:-60564498 | Msa0992350:CDS |
| TCGACAAATGCTTGCTATGG+TGG | 0.544162 | 6_4:-60567224 | Msa0992350:CDS |
| CATAAGGCATCAAATACAGC+AGG | 0.544570 | 6_4:+60563657 | None:intergenic |
| AGCGTAAAATCTCCTATACA+TGG | 0.550598 | 6_4:+60563784 | None:intergenic |
| ATTGGGTCGAGAGTAGTTCA+TGG | 0.552094 | 6_4:-60567175 | Msa0992350:CDS |
| TTGGTGAGATAGAATGTGCC+TGG | 0.557441 | 6_4:+60563815 | None:intergenic |
| TGCTTTGGGATTAATGTGCT+AGG | 0.560072 | 6_4:+60564504 | None:intergenic |
| ACCACAACACTAGATTCATT+CGG | 0.561173 | 6_4:-60569354 | Msa0992350:five_prime_UTR |
| GCTCATGATGGTGTGAGCAA+AGG | 0.562689 | 6_4:-60568546 | Msa0992350:CDS |
| ATGACTTCCTCAGAAATCCA+AGG | 0.565852 | 6_4:-60565375 | Msa0992350:intron |
| ATTGCAGCTGCTCCTCCGGT+AGG | 0.573946 | 6_4:+60566889 | None:intergenic |
| AGCAAAGGGAAATATACCAT+TGG | 0.577238 | 6_4:-60568531 | Msa0992350:CDS |
| CTCACAGACCTGTTATCTCA+TGG | 0.581493 | 6_4:-60565859 | Msa0992350:CDS |
| CCACAAACCTTGGATTTCTG+AGG | 0.582412 | 6_4:+60565368 | None:intergenic |
| GTGAGTCGTGCTTATTGTGA+AGG | 0.584670 | 6_4:+60564433 | None:intergenic |
| AGCGGTAATACTGACATTGA+AGG | 0.588444 | 6_4:-60567254 | Msa0992350:CDS |
| GATTCGACAAATGCTTGCTA+TGG | 0.594050 | 6_4:-60567227 | Msa0992350:CDS |
| ATCATGGAGCACCATTATGG+TGG | 0.594905 | 6_4:-60563878 | Msa0992350:CDS |
| CGAGGATTCCAACATTGTTG+GGG | 0.596716 | 6_4:+60569259 | None:intergenic |
| ACTTTGATAGCTCTCATCAC+CGG | 0.600555 | 6_4:+60564893 | None:intergenic |
| TTGGAAATATGCAATTGTAG+TGG | 0.607204 | 6_4:-60563491 | Msa0992350:three_prime_UTR |
| GGTGGAAAGGACTTTGTGAC+TGG | 0.608496 | 6_4:-60563860 | Msa0992350:CDS |
| TTGGGTCGAGAGTAGTTCAT+GGG | 0.609043 | 6_4:-60567174 | Msa0992350:CDS |
| GGAGCACCATTATGGTGGAA+AGG | 0.610343 | 6_4:-60563873 | Msa0992350:CDS |
| ACAATCCTGTCCAAGTCCAA+TGG | 0.611651 | 6_4:+60568515 | None:intergenic |
| ATATACCTGTTGAACACAAG+TGG | 0.612746 | 6_4:+60569215 | None:intergenic |
| CCTGTTGAACACAAGTGGGA+GGG | 0.626460 | 6_4:+60569220 | None:intergenic |
| GAAGCTTTGGAAGCTCATGA+TGG | 0.632753 | 6_4:-60568558 | Msa0992350:CDS |
| ACCTGTTGAACACAAGTGGG+AGG | 0.635317 | 6_4:+60569219 | None:intergenic |
| GGACCGGCTCGTCCTACCGG+AGG | 0.638433 | 6_4:-60566901 | Msa0992350:CDS |
| AAAATCGGTCGATTGGAGGT+AGG | 0.639954 | 6_4:-60567979 | Msa0992350:CDS |
| CAAGTTGAAGCAGAGAGTTG+AGG | 0.640567 | 6_4:-60564182 | Msa0992350:intron |
| GATGTTGACTTTCTTGAAGG+CGG | 0.642816 | 6_4:+60564248 | None:intergenic |
| TATACCTGTTGAACACAAGT+GGG | 0.647490 | 6_4:+60569216 | None:intergenic |
| GAATGAATCTAGTGTTGTGG+TGG | 0.654918 | 6_4:+60569356 | None:intergenic |
| ACCGAATGAATCTAGTGTTG+TGG | 0.659364 | 6_4:+60569353 | None:intergenic |
| GGAAATAGATGTCTATAGCG+AGG | 0.665710 | 6_4:+60569241 | None:intergenic |
| GTCGAGAGTAGTTCATGGGA+CGG | 0.680444 | 6_4:-60567170 | Msa0992350:CDS |
| TTGAAGATATTATCTCAATG+AGG | 0.682145 | 6_4:-60568473 | Msa0992350:intron |
| TTGTATGGCATTCTGTACTG+AGG | 0.700133 | 6_4:-60568496 | Msa0992350:CDS |
| TGTTGTAATAATCAGGACAG+CGG | 0.715900 | 6_4:-60567272 | Msa0992350:intron |
| GCGGAAGGAGAACATCGTAG+AGG | 0.725504 | 6_4:+60564267 | None:intergenic |
| TGTTGTCTGTACAGACAGTG+CGG | 0.761388 | 6_4:-60567135 | Msa0992350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTTTGACAAA+AGG | + | chr6_4:60563528-60563547 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTTTCATTTG+TGG | - | chr6_4:60564016-60564035 | Msa0992350:intron | 10.0% |
| !!! | TTTTTATTTTTTTCATTTGT+GGG | - | chr6_4:60564017-60564036 | Msa0992350:intron | 10.0% |
| !!! | AATGAATTTTTTTTTGTTTA+TGG | - | chr6_4:60564047-60564066 | Msa0992350:intron | 10.0% |
| !! | TTAATATAAGAAATGATATT+TGG | + | chr6_4:60568983-60569002 | None:intergenic | 10.0% |
| !!! | TATTTATTTTTTTGTCCAAA+TGG | - | chr6_4:60563908-60563927 | Msa0992350:CDS | 15.0% |
| !!! | ATTTATTTTTTTGTCCAAAT+GGG | - | chr6_4:60563909-60563928 | Msa0992350:CDS | 15.0% |
| !!! | TTTTATTTTTTTCATTTGTG+GGG | - | chr6_4:60564018-60564037 | Msa0992350:intron | 15.0% |
| !!! | TCATTTTCTCAAAATTTTAT+CGG | - | chr6_4:60564281-60564300 | Msa0992350:CDS | 15.0% |
| !!! | AGTTTTTTTTTCCTATTTTT+TGG | + | chr6_4:60564746-60564765 | None:intergenic | 15.0% |
| !! | AAAATAGGAAAAAAAAACTA+TGG | - | chr6_4:60564747-60564766 | Msa0992350:intron | 15.0% |
| !!! | ACAAATTTTTCATGTTTTTA+TGG | - | chr6_4:60565637-60565656 | Msa0992350:intron | 15.0% |
| !!! | TAAAAATTTGAAGAGTTTTT+TGG | + | chr6_4:60567172-60567191 | None:intergenic | 15.0% |
| !! | ATATTATATCATATTCTGTT+AGG | - | chr6_4:60567854-60567873 | Msa0992350:intron | 15.0% |
| !!! | TTTTAGAATTGATTATAACA+TGG | + | chr6_4:60568282-60568301 | None:intergenic | 15.0% |
| !!! | AAAATATAAAAGTATGTTGT+TGG | - | chr6_4:60569445-60569464 | Msa0992350:five_prime_UTR | 15.0% |
| !!! | TGTTTTTTTTTCTTCTTATG+TGG | - | chr6_4:60563816-60563835 | Msa0992350:CDS | 20.0% |
| !! | TTATAGATTATGAGTTAGTT+TGG | - | chr6_4:60564159-60564178 | Msa0992350:intron | 20.0% |
| !! | GAGAAAATGATATATTAATG+TGG | + | chr6_4:60564271-60564290 | None:intergenic | 20.0% |
| !!! | TGTTTTTGTTTTTTCATTTG+TGG | - | chr6_4:60564355-60564374 | Msa0992350:intron | 20.0% |
| !!! | GTTTTTGTTTTTTCATTTGT+GGG | - | chr6_4:60564356-60564375 | Msa0992350:intron | 20.0% |
| !!! | TTTTCAATCATTGATTTGAT+TGG | - | chr6_4:60564704-60564723 | Msa0992350:intron | 20.0% |
| !!! | TAATAGTTTTGCCAAAAAAT+AGG | - | chr6_4:60564732-60564751 | Msa0992350:intron | 20.0% |
| !! | AATATCTTTAAGCAAAATGT+TGG | + | chr6_4:60565090-60565109 | None:intergenic | 20.0% |
| !!! | TATTTTAGCAGTTAGTTTAT+AGG | - | chr6_4:60565106-60565125 | Msa0992350:intron | 20.0% |
| !!! | ATTTTAGCAGTTAGTTTATA+GGG | - | chr6_4:60565107-60565126 | Msa0992350:intron | 20.0% |
| !! | AAGTTTAGGAAACAATAAAT+CGG | + | chr6_4:60565583-60565602 | None:intergenic | 20.0% |
| !! | TATAAATGTCTTATATGAAG+TGG | - | chr6_4:60566242-60566261 | Msa0992350:intron | 20.0% |
| !! | AGAAGAAATTAATGAAATAG+AGG | + | chr6_4:60566878-60566897 | None:intergenic | 20.0% |
| !! | ATAATATCAAATACCAACAA+TGG | - | chr6_4:60566901-60566920 | Msa0992350:CDS | 20.0% |
| !!! | TTAAACAAAAAGCAGATTTT+AGG | + | chr6_4:60567401-60567420 | None:intergenic | 20.0% |
| !! | AAATAATCACAAAAGGAAAA+TGG | + | chr6_4:60567641-60567660 | None:intergenic | 20.0% |
| !! | TACAATTAAAATTATCCAGA+AGG | + | chr6_4:60567669-60567688 | None:intergenic | 20.0% |
| !! | GAACAAAAACAATTATGAAT+AGG | + | chr6_4:60567970-60567989 | None:intergenic | 20.0% |
| !! | TGAATGTAGAAATATTTGTT+TGG | - | chr6_4:60568232-60568251 | Msa0992350:intron | 20.0% |
| ! | TGTGTTTGAATTGAAATGAA+TGG | + | chr6_4:60563503-60563522 | None:intergenic | 25.0% |
| !! | TAAAAATTCATTTTCCCTGA+AGG | - | chr6_4:60563541-60563560 | Msa0992350:three_prime_UTR | 25.0% |
| ! | ATATATTAATGTGGAACATC+AGG | + | chr6_4:60564262-60564281 | None:intergenic | 25.0% |
| ! | TTGAAGATATTATCTCAATG+AGG | - | chr6_4:60564482-60564501 | Msa0992350:CDS | 25.0% |
| ! | AATATTGATCCGAAGAAAAT+CGG | - | chr6_4:60564961-60564980 | Msa0992350:intron | 25.0% |
| !! | TAAAAGAGTTCTAACTAGAA+AGG | + | chr6_4:60565146-60565165 | None:intergenic | 25.0% |
| !!! | TGTCATTATTTTAGCTTATG+TGG | - | chr6_4:60565220-60565239 | Msa0992350:intron | 25.0% |
| !! | CATAAATTTAAAGTCGTGTT+TGG | - | chr6_4:60565419-60565438 | Msa0992350:intron | 25.0% |
| ! | TATGCAAGAATACAAAAGAT+AGG | + | chr6_4:60565503-60565522 | None:intergenic | 25.0% |
| ! | TATCATCTTTATTGTTCCTT+CGG | + | chr6_4:60565533-60565552 | None:intergenic | 25.0% |
| ! | TTTATCTCATCTGTAAGTTT+AGG | + | chr6_4:60565597-60565616 | None:intergenic | 25.0% |
| ! | ACTTACAGATGAGATAAATT+TGG | - | chr6_4:60565599-60565618 | Msa0992350:intron | 25.0% |
| ! | TCATGTATGTTGTAATAATC+AGG | - | chr6_4:60565676-60565695 | Msa0992350:intron | 25.0% |
| ! | TTTGTTCAATTGTGTGAATT+GGG | - | chr6_4:60565763-60565782 | Msa0992350:intron | 25.0% |
| !!! | ACCTTTGACATTATTTTTTC+AGG | - | chr6_4:60566020-60566039 | Msa0992350:intron | 25.0% |
| ! | ACCTGAAAAAATAATGTCAA+AGG | + | chr6_4:60566024-60566043 | None:intergenic | 25.0% |
| ! | TTTCTATTATCTAGCTATCT+AGG | - | chr6_4:60566437-60566456 | Msa0992350:intron | 25.0% |
| ! | ATAAGCGCATATTATATAAG+TGG | + | chr6_4:60566579-60566598 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTATAACTAAC+TGG | + | chr6_4:60566813-60566832 | None:intergenic | 25.0% |
| ! | CAGTTAGTTATAACTATCTT+AGG | - | chr6_4:60566811-60566830 | Msa0992350:CDS | 25.0% |
| ! | ATACAATGGCTGTATTATAT+AGG | + | chr6_4:60566840-60566859 | None:intergenic | 25.0% |
| !! | AATTAATGAAATAGAGGTGT+AGG | + | chr6_4:60566872-60566891 | None:intergenic | 25.0% |
| ! | TTTAATCTATGTTTGTAGAC+TGG | + | chr6_4:60567022-60567041 | None:intergenic | 25.0% |
| ! | CATGTACAGATTTGAAAAAT+CGG | - | chr6_4:60567214-60567233 | Msa0992350:CDS | 25.0% |
| !! | TTTTCATTCTCCATATAACA+AGG | - | chr6_4:60567277-60567296 | Msa0992350:intron | 25.0% |
| !! | CATATGATTACCTTGTTATA+TGG | + | chr6_4:60567290-60567309 | None:intergenic | 25.0% |
| ! | TTGAAGGAGTTAAAAGAATA+GGG | + | chr6_4:60567484-60567503 | None:intergenic | 25.0% |
| ! | GGTAAACAAATAATCACAAA+AGG | + | chr6_4:60567648-60567667 | None:intergenic | 25.0% |
| ! | TTTAATTGTAATAAGCCAGT+AGG | - | chr6_4:60567679-60567698 | Msa0992350:intron | 25.0% |
| !!! | TCATAATTGTTTTTGTTCTC+TGG | - | chr6_4:60567972-60567991 | Msa0992350:CDS | 25.0% |
| !! | CAATTTGAGTTTAGTATGTT+TGG | + | chr6_4:60568331-60568350 | None:intergenic | 25.0% |
| ! | AAAAAAAATATATGACGCGA+AGG | - | chr6_4:60568423-60568442 | Msa0992350:intron | 25.0% |
| ! | ACAATGTTCAACAAGTTAAA+GGG | + | chr6_4:60568732-60568751 | None:intergenic | 25.0% |
| !!! | GTTTTGTTAAAGATGATGTT+TGG | + | chr6_4:60569008-60569027 | None:intergenic | 25.0% |
| !!! | TTGAGAAAAGTAGTTTGTTA+TGG | - | chr6_4:60569271-60569290 | Msa0992350:CDS | 25.0% |
| ! | AACTAGAATAAATAGCCATA+AGG | + | chr6_4:60569317-60569336 | None:intergenic | 25.0% |
| ! | ATAACTATAGTTTGATCAGT+TGG | - | chr6_4:60569383-60569402 | Msa0992350:five_prime_UTR | 25.0% |
| !! | TTTTTCAACTAACTCCTTCA+GGG | + | chr6_4:60563558-60563577 | None:intergenic | 30.0% |
| !!! | TTTTTTCAACTAACTCCTTC+AGG | + | chr6_4:60563559-60563578 | None:intergenic | 30.0% |
| !!! | TATTTTTTTGTCCAAATGGG+TGG | - | chr6_4:60563912-60563931 | Msa0992350:CDS | 30.0% |
| !! | GAAAAGTATCTTAGTAACAC+CGG | + | chr6_4:60564680-60564699 | None:intergenic | 30.0% |
| ATACCTCAAAAATTTGCATC+AGG | + | chr6_4:60565044-60565063 | None:intergenic | 30.0% | |
| TCAATCTTATACCAAAAGGA+GGG | + | chr6_4:60565465-60565484 | None:intergenic | 30.0% | |
| TCACTCAATCTTATACCAAA+AGG | + | chr6_4:60565469-60565488 | None:intergenic | 30.0% | |
| TTAGGAAACAATAAATCGGA+TGG | + | chr6_4:60565579-60565598 | None:intergenic | 30.0% | |
| ACAGATGAGATAAATTTGGT+AGG | - | chr6_4:60565603-60565622 | Msa0992350:intron | 30.0% | |
| CTTTGTTCAATTGTGTGAAT+TGG | - | chr6_4:60565762-60565781 | Msa0992350:intron | 30.0% | |
| ! | GAGAAAGATTTTTGTATGCT+AGG | + | chr6_4:60565854-60565873 | None:intergenic | 30.0% |
| AAACAGTAGCAAAAGAAAGT+AGG | + | chr6_4:60565879-60565898 | None:intergenic | 30.0% | |
| ! | AGTTTGCTTTCAAAAGCAAT+AGG | + | chr6_4:60566117-60566136 | None:intergenic | 30.0% |
| !! | ATTTGGCTTGTAAAAGTCAT+AGG | + | chr6_4:60566163-60566182 | None:intergenic | 30.0% |
| AAGTAAAACTAACACAGAGA+AGG | + | chr6_4:60566218-60566237 | None:intergenic | 30.0% | |
| ATTGAAACCAACTTCACTTA+GGG | - | chr6_4:60566303-60566322 | Msa0992350:intron | 30.0% | |
| !! | GACTTTAATAAGGTCTTGTT+TGG | + | chr6_4:60566630-60566649 | None:intergenic | 30.0% |
| TTGAGGACATGACTTTAATA+AGG | + | chr6_4:60566640-60566659 | None:intergenic | 30.0% | |
| !! | ATATAGAAGCGTACTCTTTT+CGG | + | chr6_4:60566673-60566692 | None:intergenic | 30.0% |
| ! | TTTTAGTGTCAAACCATTGT+TGG | + | chr6_4:60566917-60566936 | None:intergenic | 30.0% |
| ! | TTTTAACCTTTTTCTCGTGT+AGG | - | chr6_4:60567057-60567076 | Msa0992350:intron | 30.0% |
| TACAGATTTGAAAAATCGGA+GGG | - | chr6_4:60567218-60567237 | Msa0992350:CDS | 30.0% | |
| TGAAATCATTTCTCCATACT+TGG | - | chr6_4:60567329-60567348 | Msa0992350:intron | 30.0% | |
| ATTTCTCCATACTTGGATTT+CGG | - | chr6_4:60567336-60567355 | Msa0992350:intron | 30.0% | |
| AAAAAACCGAAATCCAAGTA+TGG | + | chr6_4:60567345-60567364 | None:intergenic | 30.0% | |
| GTTGAAGGAGTTAAAAGAAT+AGG | + | chr6_4:60567485-60567504 | None:intergenic | 30.0% | |
| ! | TGAAAGTTAAAACAGGTTGA+AGG | + | chr6_4:60567500-60567519 | None:intergenic | 30.0% |
| GTACTCATGAAAGTTAAAAC+AGG | + | chr6_4:60567507-60567526 | None:intergenic | 30.0% | |
| !! | TTGTGCAAAAAAGTTTTGGT+CGG | - | chr6_4:60567547-60567566 | Msa0992350:intron | 30.0% |
| GTGATTATTTGTTTACCTTC+TGG | - | chr6_4:60567651-60567670 | Msa0992350:intron | 30.0% | |
| !! | CATGATTTGCTAGTACTTAT+TGG | - | chr6_4:60567750-60567769 | Msa0992350:intron | 30.0% |
| TGAAACATGAAATTTCTGCA+TGG | - | chr6_4:60567791-60567810 | Msa0992350:intron | 30.0% | |
| ! | TTTGAGTTTAGTATGTTTGG+TGG | + | chr6_4:60568328-60568347 | None:intergenic | 30.0% |
| !!! | ATATTTTTTTTGCAGCTTGC+TGG | + | chr6_4:60568414-60568433 | None:intergenic | 30.0% |
| CACAATGTTCAACAAGTTAA+AGG | + | chr6_4:60568733-60568752 | None:intergenic | 30.0% | |
| GAAGAGAAAGAAAATAAGGT+GGG | + | chr6_4:60568935-60568954 | None:intergenic | 30.0% | |
| TGAAGAGAAAGAAAATAAGG+TGG | + | chr6_4:60568936-60568955 | None:intergenic | 30.0% | |
| GTGTGAAGAGAAAGAAAATA+AGG | + | chr6_4:60568939-60568958 | None:intergenic | 30.0% | |
| !!! | TTTTCGACAAATTTTTCAGG+TGG | + | chr6_4:60569050-60569069 | None:intergenic | 30.0% |
| ! | GTGTTTTCGACAAATTTTTC+AGG | + | chr6_4:60569053-60569072 | None:intergenic | 30.0% |
| TGTCGAAAACACAAAAATCA+TGG | - | chr6_4:60569061-60569080 | Msa0992350:intron | 30.0% | |
| TTGGAAATATGCAATTGTAG+TGG | - | chr6_4:60569464-60569483 | Msa0992350:five_prime_UTR | 30.0% | |
| ACCACAACACTAGATTCATT+CGG | - | chr6_4:60563601-60563620 | Msa0992350:three_prime_UTR | 35.0% | |
| TATACCTGTTGAACACAAGT+GGG | + | chr6_4:60563742-60563761 | None:intergenic | 35.0% | |
| ATATACCTGTTGAACACAAG+TGG | + | chr6_4:60563743-60563762 | None:intergenic | 35.0% | |
| ! | AAGAAGAAAGTGCATGATGA+TGG | + | chr6_4:60563769-60563788 | None:intergenic | 35.0% |
| AGCAAAGGGAAATATACCAT+TGG | - | chr6_4:60564424-60564443 | Msa0992350:intron | 35.0% | |
| CTCAAAAATTTGCATCAGGA+AGG | + | chr6_4:60565040-60565059 | None:intergenic | 35.0% | |
| ! | CTTCCTGATGCAAATTTTTG+AGG | - | chr6_4:60565038-60565057 | Msa0992350:intron | 35.0% |
| TCTGTTAGATCTATTGTCTC+TGG | - | chr6_4:60565311-60565330 | Msa0992350:intron | 35.0% | |
| CGAAATATTGCGATCAATTG+CGG | + | chr6_4:60565360-60565379 | None:intergenic | 35.0% | |
| ATCGCAATATTTCGCAATCT+GGG | - | chr6_4:60565366-60565385 | Msa0992350:intron | 35.0% | |
| TGCTGTCAGTTATAGAAATC+TGG | + | chr6_4:60565401-60565420 | None:intergenic | 35.0% | |
| CTCAATCTTATACCAAAAGG+AGG | + | chr6_4:60565466-60565485 | None:intergenic | 35.0% | |
| TGTTGTAATAATCAGGACAG+CGG | - | chr6_4:60565683-60565702 | Msa0992350:CDS | 35.0% | |
| !!! | TTTTTTCAGGTATATGCCGA+AGG | - | chr6_4:60566033-60566052 | Msa0992350:intron | 35.0% |
| !! | TTGCTTTTGAAAGCAAACTC+AGG | - | chr6_4:60566118-60566137 | Msa0992350:intron | 35.0% |
| !! | TGCTTTTGAAAGCAAACTCA+GGG | - | chr6_4:60566119-60566138 | Msa0992350:intron | 35.0% |
| TAAAACTAACACAGAGAAGG+TGG | + | chr6_4:60566215-60566234 | None:intergenic | 35.0% | |
| CATTGAAACCAACTTCACTT+AGG | - | chr6_4:60566302-60566321 | Msa0992350:intron | 35.0% | |
| AAATAGACCCTAAGTGAAGT+TGG | + | chr6_4:60566313-60566332 | None:intergenic | 35.0% | |
| AACTTCACTTAGGGTCTATT+TGG | - | chr6_4:60566312-60566331 | Msa0992350:intron | 35.0% | |
| GTAGGATAGCTATGATACAA+TGG | + | chr6_4:60566854-60566873 | None:intergenic | 35.0% | |
| ATCTATGTTTGTAGACTGGT+TGG | + | chr6_4:60567018-60567037 | None:intergenic | 35.0% | |
| ! | CAGGTGTTTTGTGAAAAGTA+AGG | - | chr6_4:60567136-60567155 | Msa0992350:CDS | 35.0% |
| GTACAGATTTGAAAAATCGG+AGG | - | chr6_4:60567217-60567236 | Msa0992350:CDS | 35.0% | |
| ACAGATTTGAAAAATCGGAG+GGG | - | chr6_4:60567219-60567238 | Msa0992350:CDS | 35.0% | |
| AAAGAATAGGGTTCAAACAC+TGG | + | chr6_4:60567472-60567491 | None:intergenic | 35.0% | |
| !!! | CAAAACTTTTTTGCACAAGC+TGG | + | chr6_4:60567545-60567564 | None:intergenic | 35.0% |
| ! | CAGCTTGTGCAAAAAAGTTT+TGG | - | chr6_4:60567543-60567562 | Msa0992350:intron | 35.0% |
| TGGAATTAACAGTGCAATGA+AGG | + | chr6_4:60567621-60567640 | None:intergenic | 35.0% | |
| AATTGTAATAAGCCAGTAGG+TGG | - | chr6_4:60567682-60567701 | Msa0992350:intron | 35.0% | |
| ! | TTTTATCGTTCATGTACTCC+TGG | + | chr6_4:60567915-60567934 | None:intergenic | 35.0% |
| TCAAAGTCGTGATCTTGAAA+AGG | - | chr6_4:60568078-60568097 | Msa0992350:intron | 35.0% | |
| ! | TTTAGTATGTTTGGTGGTAC+TGG | + | chr6_4:60568322-60568341 | None:intergenic | 35.0% |
| AATATGTGGTCACGATCATA+AGG | + | chr6_4:60568590-60568609 | None:intergenic | 35.0% | |
| ! | GAACACGTTTTTAAATGTGC+AGG | - | chr6_4:60568623-60568642 | Msa0992350:intron | 35.0% |
| ! | ACGTTTTTAAATGTGCAGGT+AGG | - | chr6_4:60568627-60568646 | Msa0992350:intron | 35.0% |
| TAAATGTGCAGGTAGGTAAA+AGG | - | chr6_4:60568634-60568653 | Msa0992350:intron | 35.0% | |
| AAATGTGCAGGTAGGTAAAA+GGG | - | chr6_4:60568635-60568654 | Msa0992350:intron | 35.0% | |
| AGGGTAGTTATGTTCTCATA+TGG | - | chr6_4:60568654-60568673 | Msa0992350:intron | 35.0% | |
| GTTATGTTCTCATATGGAAG+TGG | - | chr6_4:60568660-60568679 | Msa0992350:intron | 35.0% | |
| GTGACAGTGTTAAATGTTTC+TGG | - | chr6_4:60568750-60568769 | Msa0992350:intron | 35.0% | |
| TACACGAAGCGATATAAAAG+TGG | + | chr6_4:60568812-60568831 | None:intergenic | 35.0% | |
| TGGTAACTGCAATCAAAAGT+AGG | + | chr6_4:60569030-60569049 | None:intergenic | 35.0% | |
| ! | AAAATCATGGAGCACCATTA+TGG | - | chr6_4:60569074-60569093 | Msa0992350:intron | 35.0% |
| GAAGTAAGTAGTTACAGTCT+TGG | + | chr6_4:60569121-60569140 | None:intergenic | 35.0% | |
| CCTATACATGGAATCAACTT+TGG | + | chr6_4:60569162-60569181 | None:intergenic | 35.0% | |
| ! | CCAAAGTTGATTCCATGTAT+AGG | - | chr6_4:60569159-60569178 | Msa0992350:intron | 35.0% |
| AGCGTAAAATCTCCTATACA+TGG | + | chr6_4:60569174-60569193 | None:intergenic | 35.0% | |
| !! | ATCTAGTGTTGTGGTGGATT+TGG | + | chr6_4:60563596-60563615 | None:intergenic | 40.0% |
| GAATGAATCTAGTGTTGTGG+TGG | + | chr6_4:60563602-60563621 | None:intergenic | 40.0% | |
| ACCGAATGAATCTAGTGTTG+TGG | + | chr6_4:60563605-60563624 | None:intergenic | 40.0% | |
| GGAAATAGATGTCTATAGCG+AGG | + | chr6_4:60563717-60563736 | None:intergenic | 40.0% | |
| CACAATTTCAACCACCCATT+TGG | + | chr6_4:60563926-60563945 | None:intergenic | 40.0% | |
| TTTGTGGGTTTGTGTGATTC+TGG | - | chr6_4:60564371-60564390 | Msa0992350:intron | 40.0% | |
| GGGAAATATACCATTGGACT+TGG | - | chr6_4:60564430-60564449 | Msa0992350:intron | 40.0% | |
| ATATACCATTGGACTTGGAC+AGG | - | chr6_4:60564435-60564454 | Msa0992350:CDS | 40.0% | |
| TTGTATGGCATTCTGTACTG+AGG | - | chr6_4:60564459-60564478 | Msa0992350:CDS | 40.0% | |
| !! | CATTACCAATGTCGACTTGT+AGG | + | chr6_4:60564553-60564572 | None:intergenic | 40.0% |
| TCAAACACACCTTTGATCAG+AGG | - | chr6_4:60564652-60564671 | Msa0992350:intron | 40.0% | |
| CTTGTTTGATAAAGCTGCAG+TGG | - | chr6_4:60564820-60564839 | Msa0992350:intron | 40.0% | |
| !! | TCCAATCGACCGATTTTCTT+CGG | + | chr6_4:60564973-60564992 | None:intergenic | 40.0% |
| !!! | TTTTGAGGTATGCCATTCTC+AGG | - | chr6_4:60565053-60565072 | Msa0992350:intron | 40.0% |
| GCGATTGAAAAACCTGAGAA+TGG | + | chr6_4:60565068-60565087 | None:intergenic | 40.0% | |
| ! | AGAACTCTTTTAACGTCGCT+CGG | - | chr6_4:60565154-60565173 | Msa0992350:intron | 40.0% |
| GATCGCAATATTTCGCAATC+TGG | - | chr6_4:60565365-60565384 | Msa0992350:intron | 40.0% | |
| TCTTGCATATTTGAGTCCGA+AGG | - | chr6_4:60565514-60565533 | Msa0992350:intron | 40.0% | |
| AGCGGTAATACTGACATTGA+AGG | - | chr6_4:60565701-60565720 | Msa0992350:CDS | 40.0% | |
| ! | GATTCGACAAATGCTTGCTA+TGG | - | chr6_4:60565728-60565747 | Msa0992350:CDS | 40.0% |
| CTGCAATTGCAATGCTTGTA+GGG | - | chr6_4:60566082-60566101 | Msa0992350:intron | 40.0% | |
| !! | TCAAAAGCAATAGGAGCATC+TGG | + | chr6_4:60566108-60566127 | None:intergenic | 40.0% |
| !! | GCTTTTGAAAGCAAACTCAG+GGG | - | chr6_4:60566120-60566139 | Msa0992350:intron | 40.0% |
| GGGTATTCACTTGCAAGATT+TGG | + | chr6_4:60566180-60566199 | None:intergenic | 40.0% | |
| !! | GAAGGTGGAAAAGCATTACT+GGG | + | chr6_4:60566200-60566219 | None:intergenic | 40.0% |
| !! | AGAAGGTGGAAAAGCATTAC+TGG | + | chr6_4:60566201-60566220 | None:intergenic | 40.0% |
| ACGCTTCTATATTCCGAAAC+TGG | - | chr6_4:60566681-60566700 | Msa0992350:intron | 40.0% | |
| TCGAAACTTCACTCCAGTTT+CGG | + | chr6_4:60566697-60566716 | None:intergenic | 40.0% | |
| CTAACTGGCTAGATAACTTG+TGG | + | chr6_4:60566798-60566817 | None:intergenic | 40.0% | |
| CAACAACCTACACGAGAAAA+AGG | + | chr6_4:60567066-60567085 | None:intergenic | 40.0% | |
| TTTCTCGTGTAGGTTGTTGA+TGG | - | chr6_4:60567067-60567086 | Msa0992350:intron | 40.0% | |
| ATCAAGTGCCATGAGATAAC+AGG | + | chr6_4:60567107-60567126 | None:intergenic | 40.0% | |
| ATGACTTCCTCAGAAATCCA+AGG | - | chr6_4:60567580-60567599 | Msa0992350:intron | 40.0% | |
| CTAAAAAACGTACCACCTAC+TGG | + | chr6_4:60567697-60567716 | None:intergenic | 40.0% | |
| !! | TCATGTACTCCTGGTTTTCT+TGG | + | chr6_4:60567906-60567925 | None:intergenic | 40.0% |
| !!! | TTGTACCAGTTTTGTTGACG+AGG | - | chr6_4:60568003-60568022 | Msa0992350:CDS | 40.0% |
| GCACCTTATTCATCCTTAAC+CGG | - | chr6_4:60568043-60568062 | Msa0992350:intron | 40.0% | |
| ! | TCACCGGTTAAGGATGAATA+AGG | + | chr6_4:60568049-60568068 | None:intergenic | 40.0% |
| ! | ACTTTGATAGCTCTCATCAC+CGG | + | chr6_4:60568065-60568084 | None:intergenic | 40.0% |
| TAAGTGCGTGTTTCGTTCAA+CGG | - | chr6_4:60568145-60568164 | Msa0992350:intron | 40.0% | |
| AACACGAACTTAGATGCAAG+CGG | - | chr6_4:60568366-60568385 | Msa0992350:intron | 40.0% | |
| !! | TGCTTTGGGATTAATGTGCT+AGG | + | chr6_4:60568454-60568473 | None:intergenic | 40.0% |
| TGATCGTGACCACATATTAG+AGG | - | chr6_4:60568592-60568611 | Msa0992350:intron | 40.0% | |
| CAATGTCGACCTCTAATATG+TGG | + | chr6_4:60568604-60568623 | None:intergenic | 40.0% | |
| !! | GATGTTGACTTTCTTGAAGG+CGG | + | chr6_4:60568710-60568729 | None:intergenic | 40.0% |
| !! | AGGGATGTTGACTTTCTTGA+AGG | + | chr6_4:60568713-60568732 | None:intergenic | 40.0% |
| CAAAGTCCTTTCCACCATAA+TGG | + | chr6_4:60569091-60569110 | None:intergenic | 40.0% | |
| GACTGTAACTACTTACTTCC+AGG | - | chr6_4:60569122-60569141 | Msa0992350:intron | 40.0% | |
| ! | CATAAGGCATCAAATACAGC+AGG | + | chr6_4:60569301-60569320 | None:intergenic | 40.0% |
| CTGCTGTATTTGATGCCTTA+TGG | - | chr6_4:60569299-60569318 | Msa0992350:five_prime_UTR | 40.0% | |
| TCTTCACTCCCCAACAATGT+TGG | - | chr6_4:60563688-60563707 | Msa0992350:three_prime_UTR | 45.0% | |
| CGAGGATTCCAACATTGTTG+GGG | + | chr6_4:60563699-60563718 | None:intergenic | 45.0% | |
| GCGAGGATTCCAACATTGTT+GGG | + | chr6_4:60563700-60563719 | None:intergenic | 45.0% | |
| AGCGAGGATTCCAACATTGT+TGG | + | chr6_4:60563701-60563720 | None:intergenic | 45.0% | |
| ! | GCACTGACACTTCTGATTGA+AGG | - | chr6_4:60564205-60564224 | Msa0992350:CDS | 45.0% |
| GTCCTGATGTTCCACATTGA+AGG | - | chr6_4:60564231-60564250 | Msa0992350:CDS | 45.0% | |
| TGCCTTCAATGTGGAACATC+AGG | + | chr6_4:60564236-60564255 | None:intergenic | 45.0% | |
| ATCAGGACATGCCTTCAATG+TGG | + | chr6_4:60564245-60564264 | None:intergenic | 45.0% | |
| TGGGTTTGTGTGATTCTGGT+AGG | - | chr6_4:60564375-60564394 | Msa0992350:intron | 45.0% | |
| GTGATTCTGGTAGGAAGCTT+TGG | - | chr6_4:60564384-60564403 | Msa0992350:intron | 45.0% | |
| !! | GAAGCTTTGGAAGCTCATGA+TGG | - | chr6_4:60564397-60564416 | Msa0992350:intron | 45.0% |
| ! | CTCATGATGGTGTGAGCAAA+GGG | - | chr6_4:60564410-60564429 | Msa0992350:intron | 45.0% |
| ACAATCCTGTCCAAGTCCAA+TGG | + | chr6_4:60564443-60564462 | None:intergenic | 45.0% | |
| TGGACTTGGACAGGATTGTA+TGG | - | chr6_4:60564444-60564463 | Msa0992350:CDS | 45.0% | |
| CACAACCTACAAGTCGACAT+TGG | - | chr6_4:60564545-60564564 | Msa0992350:CDS | 45.0% | |
| GACATGTGTCAGTGTCATGT+TGG | - | chr6_4:60564603-60564622 | Msa0992350:intron | 45.0% | |
| GTGTGTTTGATGTTCGACAC+GGG | + | chr6_4:60564642-60564661 | None:intergenic | 45.0% | |
| GGTGTGTTTGATGTTCGACA+CGG | + | chr6_4:60564643-60564662 | None:intergenic | 45.0% | |
| TCCGAAGAAAATCGGTCGAT+TGG | - | chr6_4:60564969-60564988 | Msa0992350:intron | 45.0% | |
| GAAGAAAATCGGTCGATTGG+AGG | - | chr6_4:60564972-60564991 | Msa0992350:intron | 45.0% | |
| AAAATCGGTCGATTGGAGGT+AGG | - | chr6_4:60564976-60564995 | Msa0992350:intron | 45.0% | |
| CATCAACTGAGTTGTCTGCT+TGG | - | chr6_4:60565179-60565198 | Msa0992350:intron | 45.0% | |
| ATCCAGGAATTTCATCTCGC+TGG | + | chr6_4:60565286-60565305 | None:intergenic | 45.0% | |
| GATCTAACAGAGATCGATCC+AGG | + | chr6_4:60565302-60565321 | None:intergenic | 45.0% | |
| CAAAAGGAGGGTCAAGATAC+AGG | + | chr6_4:60565453-60565472 | None:intergenic | 45.0% | |
| ! | CTGTATCTTGACCCTCCTTT+TGG | - | chr6_4:60565451-60565470 | Msa0992350:intron | 45.0% |
| !! | TCGACAAATGCTTGCTATGG+TGG | - | chr6_4:60565731-60565750 | Msa0992350:CDS | 45.0% |
| ATTGGGTCGAGAGTAGTTCA+TGG | - | chr6_4:60565780-60565799 | Msa0992350:intron | 45.0% | |
| TTGGGTCGAGAGTAGTTCAT+GGG | - | chr6_4:60565781-60565800 | Msa0992350:intron | 45.0% | |
| TGTTGTCTGTACAGACAGTG+CGG | - | chr6_4:60565820-60565839 | Msa0992350:intron | 45.0% | |
| GCTGCAATTGCAATGCTTGT+AGG | - | chr6_4:60566081-60566100 | Msa0992350:intron | 45.0% | |
| CTCACAGACCTGTTATCTCA+TGG | - | chr6_4:60567096-60567115 | Msa0992350:intron | 45.0% | |
| ! | GGCACTTGATTCTTGCTATC+AGG | - | chr6_4:60567117-60567136 | Msa0992350:intron | 45.0% |
| !!! | GGAGGGGAAGCATTTTTCAA+TGG | - | chr6_4:60567235-60567254 | Msa0992350:CDS | 45.0% |
| !!! | GGGGAAGCATTTTTCAATGG+CGG | - | chr6_4:60567238-60567257 | Msa0992350:CDS | 45.0% |
| CCACAAACCTTGGATTTCTG+AGG | + | chr6_4:60567590-60567609 | None:intergenic | 45.0% | |
| CCTCAGAAATCCAAGGTTTG+TGG | - | chr6_4:60567587-60567606 | Msa0992350:intron | 45.0% | |
| GGCAAAAGATCCACAAACCT+TGG | + | chr6_4:60567600-60567619 | None:intergenic | 45.0% | |
| CTAACTGCTCCAAGAAAACC+AGG | - | chr6_4:60567894-60567913 | Msa0992350:intron | 45.0% | |
| GGAAACCTCGTCAACAAAAC+TGG | + | chr6_4:60568011-60568030 | None:intergenic | 45.0% | |
| !! | GTTTTGTTGACGAGGTTTCC+AGG | - | chr6_4:60568011-60568030 | Msa0992350:CDS | 45.0% |
| ! | ATAGCTCTCATCACCGGTTA+AGG | + | chr6_4:60568059-60568078 | None:intergenic | 45.0% |
| AGCGGTCGTTGTGATTATGT+AGG | - | chr6_4:60568384-60568403 | Msa0992350:intron | 45.0% | |
| GTGAGTCGTGCTTATTGTGA+AGG | + | chr6_4:60568525-60568544 | None:intergenic | 45.0% | |
| TCACAATAAGCACGACTCAC+TGG | - | chr6_4:60568525-60568544 | Msa0992350:CDS | 45.0% | |
| ATAAGCACGACTCACTGGTA+TGG | - | chr6_4:60568530-60568549 | Msa0992350:CDS | 45.0% | |
| TGTGGTCACGATCATAAGGA+AGG | + | chr6_4:60568586-60568605 | None:intergenic | 45.0% | |
| TTGACTTTCTTGAAGGCGGA+AGG | + | chr6_4:60568706-60568725 | None:intergenic | 45.0% | |
| ! | CAAGTTGAAGCAGAGAGTTG+AGG | - | chr6_4:60568773-60568792 | Msa0992350:intron | 45.0% |
| ! | ATCATGGAGCACCATTATGG+TGG | - | chr6_4:60569077-60569096 | Msa0992350:intron | 45.0% |
| TTGGTGAGATAGAATGTGCC+TGG | + | chr6_4:60569143-60569162 | None:intergenic | 45.0% | |
| CCTGTTGAACACAAGTGGGA+GGG | + | chr6_4:60563738-60563757 | None:intergenic | 50.0% | |
| ACCTGTTGAACACAAGTGGG+AGG | + | chr6_4:60563739-60563758 | None:intergenic | 50.0% | |
| ! | GCTCATGATGGTGTGAGCAA+AGG | - | chr6_4:60564409-60564428 | Msa0992350:intron | 50.0% |
| TGTCAGTGTCATGTTGGCGT+CGG | - | chr6_4:60564609-60564628 | Msa0992350:intron | 50.0% | |
| GTTTGATGTTCGACACGGGT+CGG | + | chr6_4:60564638-60564657 | None:intergenic | 50.0% | |
| ! | ACACCTTTGATCAGAGGTGC+CGG | - | chr6_4:60564658-60564677 | Msa0992350:intron | 50.0% |
| CTCCAGCGAGATGAAATTCC+TGG | - | chr6_4:60565281-60565300 | Msa0992350:intron | 50.0% | |
| GTCGAGAGTAGTTCATGGGA+CGG | - | chr6_4:60565785-60565804 | Msa0992350:intron | 50.0% | |
| AGTTCATGGGACGGACGTTA+TGG | - | chr6_4:60565794-60565813 | Msa0992350:intron | 50.0% | |
| TCAGGTATATGCCGAAGGAC+CGG | - | chr6_4:60566038-60566057 | Msa0992350:intron | 50.0% | |
| AAGTCATGTCCTCAACGCGT+CGG | - | chr6_4:60566645-60566664 | Msa0992350:intron | 50.0% | |
| ! | ATAAGGTGCTAGAGCTTGCC+TGG | + | chr6_4:60568032-60568051 | None:intergenic | 50.0% |
| ! | GGAGCACCATTATGGTGGAA+AGG | - | chr6_4:60569082-60569101 | Msa0992350:intron | 50.0% |
| GGTGGAAAGGACTTTGTGAC+TGG | - | chr6_4:60569095-60569114 | Msa0992350:intron | 50.0% | |
| CCCTCCCACTTGTGTTCAAC+AGG | - | chr6_4:60563735-60563754 | Msa0992350:three_prime_UTR | 55.0% | |
| ACACCGGCACCTCTGATCAA+AGG | + | chr6_4:60564664-60564683 | None:intergenic | 55.0% | |
| TGCAATTGCAGCTGCTCCTC+CGG | + | chr6_4:60566073-60566092 | None:intergenic | 55.0% | |
| GCGGAAGGAGAACATCGTAG+AGG | + | chr6_4:60568691-60568710 | None:intergenic | 55.0% | |
| ATTGCAGCTGCTCCTCCGGT+AGG | + | chr6_4:60566069-60566088 | None:intergenic | 60.0% | |
| ! | TTTTCGGCTCCGACGCGTTG+AGG | + | chr6_4:60566657-60566676 | None:intergenic | 60.0% |
| GGTAGGACGAGCCGGTCCTT+CGG | + | chr6_4:60566052-60566071 | None:intergenic | 65.0% | |
| !! | GAAGGACCGGCTCGTCCTAC+CGG | - | chr6_4:60566051-60566070 | Msa0992350:intron | 65.0% |
| GCTCCTCCGGTAGGACGAGC+CGG | + | chr6_4:60566060-60566079 | None:intergenic | 70.0% | |
| !! | GGACCGGCTCGTCCTACCGG+AGG | - | chr6_4:60566054-60566073 | Msa0992350:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 60563475 | 60569502 | 60563475 | ID=Msa0992350;Name=Msa0992350 |
| chr6_4 | mRNA | 60563475 | 60569502 | 60563475 | ID=Msa0992350-mRNA-1;Parent=Msa0992350;Name=Msa0992350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=207|1|1|1|1|1|12|282|459 |
| chr6_4 | exon | 60563475 | 60563933 | 60563475 | ID=Msa0992350-mRNA-1:exon:11798;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60564183 | 60564332 | 60564183 | ID=Msa0992350-mRNA-1:exon:11797;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60564431 | 60564571 | 60564431 | ID=Msa0992350-mRNA-1:exon:11796;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60564878 | 60564965 | 60564878 | ID=Msa0992350-mRNA-1:exon:11795;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60565376 | 60565431 | 60565376 | ID=Msa0992350-mRNA-1:exon:11794;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60565679 | 60565754 | 60565679 | ID=Msa0992350-mRNA-1:exon:11793;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60565825 | 60565898 | 60565825 | ID=Msa0992350-mRNA-1:exon:11792;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60566777 | 60566935 | 60566777 | ID=Msa0992350-mRNA-1:exon:11791;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60567136 | 60567279 | 60567136 | ID=Msa0992350-mRNA-1:exon:11790;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60567918 | 60568050 | 60567918 | ID=Msa0992350-mRNA-1:exon:11789;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60568474 | 60568580 | 60568474 | ID=Msa0992350-mRNA-1:exon:11788;Parent=Msa0992350-mRNA-1 |
| chr6_4 | exon | 60569221 | 60569502 | 60569221 | ID=Msa0992350-mRNA-1:exon:11787;Parent=Msa0992350-mRNA-1 |
| chr6_4 | five_prime_UTR | 60569296 | 60569502 | 60569296 | ID=Msa0992350-mRNA-1:five_prime_utr;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60569221 | 60569295 | 60569221 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60568474 | 60568580 | 60568474 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60567918 | 60568050 | 60567918 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60567136 | 60567279 | 60567136 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60566777 | 60566935 | 60566777 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60565825 | 60565898 | 60565825 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60565679 | 60565754 | 60565679 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60565376 | 60565431 | 60565376 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60564878 | 60564965 | 60564878 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60564431 | 60564571 | 60564431 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60564183 | 60564332 | 60564183 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | CDS | 60563757 | 60563933 | 60563757 | ID=Msa0992350-mRNA-1:cds;Parent=Msa0992350-mRNA-1 |
| chr6_4 | three_prime_UTR | 60563475 | 60563756 | 60563475 | ID=Msa0992350-mRNA-1:three_prime_utr;Parent=Msa0992350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
