Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100090 | Msa0997310 | 0.803150 | 3.999756e-49 | -8.615850e-47 |
| Msa0109590 | Msa0997310 | 0.805165 | 1.522933e-49 | -8.615850e-47 |
| Msa0114060 | Msa0997310 | 0.804844 | 1.777475e-49 | -8.615850e-47 |
| Msa0115270 | Msa0997310 | 0.811961 | 5.387842e-51 | -8.615850e-47 |
| Msa0608140 | Msa0997310 | 0.803578 | 3.260204e-49 | -8.615850e-47 |
| Msa0608160 | Msa0997310 | 0.825190 | 5.364438e-54 | -8.615850e-47 |
| Msa0648080 | Msa0997310 | 0.824746 | 6.829050e-54 | -8.615850e-47 |
| Msa0652940 | Msa0997310 | 0.804217 | 2.402242e-49 | -8.615850e-47 |
| Msa0663240 | Msa0997310 | 0.817376 | 3.406098e-52 | -8.615850e-47 |
| Msa0672690 | Msa0997310 | 0.810159 | 1.323851e-50 | -8.615850e-47 |
| Msa0688480 | Msa0997310 | 0.823986 | 1.030747e-53 | -8.615850e-47 |
| Msa0817460 | Msa0997310 | 0.801325 | 9.496933e-49 | -8.615850e-47 |
| Msa0197660 | Msa0997310 | 0.825346 | 4.927894e-54 | -8.615850e-47 |
| Msa0393770 | Msa0997310 | 0.800006 | 1.764704e-48 | -8.615850e-47 |
| Msa0453330 | Msa0997310 | 0.813793 | 2.138045e-51 | -8.615850e-47 |
| Msa0997310 | Msa1002850 | 0.806937 | 6.452371e-50 | -8.615850e-47 |
| Msa0997310 | Msa1014540 | 0.801007 | 1.103188e-48 | -8.615850e-47 |
| Msa0997310 | Msa1082500 | 0.808161 | 3.549009e-50 | -8.615850e-47 |
| Msa0997310 | Msa1275360 | 0.802380 | 5.767203e-49 | -8.615850e-47 |
| Msa0997310 | Msa1411020 | 0.803987 | 2.682031e-49 | -8.615850e-47 |
| Msa0997310 | Msa1420490 | 0.819978 | 8.742083e-53 | -8.615850e-47 |
| Msa0997310 | Msa1423390 | 0.820773 | 5.745332e-53 | -8.615850e-47 |
| Msa0997310 | Msa1440370 | 0.817080 | 3.970482e-52 | -8.615850e-47 |
| Msa0997310 | Msa1440810 | 0.812375 | 4.375856e-51 | -8.615850e-47 |
| Msa0997310 | Msa1460050 | 0.810320 | 1.222371e-50 | -8.615850e-47 |
| Msa0239800 | Msa0997310 | 0.827622 | 1.412983e-54 | -8.615850e-47 |
| Msa0277820 | Msa0997310 | 0.802120 | 6.522600e-49 | -8.615850e-47 |
| Msa0317510 | Msa0997310 | 0.818681 | 1.726815e-52 | -8.615850e-47 |
| Msa0326520 | Msa0997310 | 0.807598 | 4.673964e-50 | -8.615850e-47 |
| Msa0585230 | Msa0997310 | 0.803578 | 3.260977e-49 | -8.615850e-47 |
| Msa0857640 | Msa0997310 | 0.809546 | 1.794018e-50 | -8.615850e-47 |
| Msa0923790 | Msa0997310 | 0.838435 | 2.880845e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTGTAGGCTTGGCTTTC+TGG | 0.089164 | 6_4:+76685576 | Msa0997310:five_prime_UTR |
| TGTTTAGGCTGTTGAAGGTT+GGG | 0.310010 | 6_4:+76685971 | Msa0997310:intron |
| TGTTGGTTTGTTTGTGCTCA+TGG | 0.333097 | 6_4:+76683962 | Msa0997310:intron |
| ACTTATTTATATTTAGTAAT+GGG | 0.349767 | 6_4:-76686207 | None:intergenic |
| TAAAGTCAGGAGATGAATTA+TGG | 0.353844 | 6_4:+76686015 | Msa0997310:CDS |
| CCATACTTAGGTGGCTCATT+TGG | 0.362701 | 6_4:+76685820 | Msa0997310:CDS |
| ACTTGATGCAAGACATGCTT+TGG | 0.365400 | 6_4:-76686344 | None:intergenic |
| CTGGATTAGCATGGCACCTT+GGG | 0.371240 | 6_4:+76685595 | Msa0997310:exon |
| TGCAAGACATGCTTTGGAAT+TGG | 0.380086 | 6_4:-76686338 | None:intergenic |
| CCAAATGAGCCACCTAAGTA+TGG | 0.382983 | 6_4:-76685820 | None:intergenic |
| GTTTAGGCTGTTGAAGGTTG+GGG | 0.389434 | 6_4:+76685972 | Msa0997310:intron |
| TATCTTGTTTAGGCTGTTGA+AGG | 0.389713 | 6_4:+76685966 | Msa0997310:intron |
| TTGTTTAGGCTGTTGAAGGT+TGG | 0.438805 | 6_4:+76685970 | Msa0997310:intron |
| GACTTATTTATATTTAGTAA+TGG | 0.441698 | 6_4:-76686208 | None:intergenic |
| TACAATAGAGTGTTTGTTGT+TGG | 0.465606 | 6_4:-76685330 | None:intergenic |
| TTGGATGTTGCAGAAAGAAA+AGG | 0.471032 | 6_4:-76686404 | None:intergenic |
| GGATTCACGAAAACAGCAAA+TGG | 0.474560 | 6_4:+76686053 | Msa0997310:CDS |
| TCTGGATTAGCATGGCACCT+TGG | 0.479623 | 6_4:+76685594 | Msa0997310:exon |
| GTGTGTTTGTAGTGGAGACT+TGG | 0.486501 | 6_4:-76686179 | None:intergenic |
| GAAGCTGCATGAAAAGTAAG+AGG | 0.486955 | 6_4:-76686257 | None:intergenic |
| GACAAAGAATGGTGTAGGCT+TGG | 0.487669 | 6_4:+76685568 | Msa0997310:five_prime_UTR |
| TAAACTCAATGGACAAAGAA+TGG | 0.488753 | 6_4:+76685557 | Msa0997310:five_prime_UTR |
| GCAAAAGCAGGGTTAAAGTC+AGG | 0.500832 | 6_4:+76686002 | Msa0997310:CDS |
| ATAGAAATTATTTGTCTCGA+AGG | 0.504218 | 6_4:+76686106 | Msa0997310:exon |
| CTTGGCTTTCTGGATTAGCA+TGG | 0.510281 | 6_4:+76685586 | Msa0997310:exon |
| TTATATTTAGTAATGGGTGT+TGG | 0.513099 | 6_4:-76686201 | None:intergenic |
| GGGTGTTGGTGTGTTTGTAG+TGG | 0.525806 | 6_4:-76686187 | None:intergenic |
| TACTAAATATAAATAAGTCG+TGG | 0.532381 | 6_4:+76686212 | Msa0997310:three_prime_UTR |
| GTGAATCCAAGCTTATCTGC+TGG | 0.535393 | 6_4:-76686038 | None:intergenic |
| TTATGGCCAGCAGATAAGCT+TGG | 0.539708 | 6_4:+76686032 | Msa0997310:CDS |
| TGTTGTTGGTGTAGAAAATG+AGG | 0.543974 | 6_4:-76685316 | None:intergenic |
| TTTAGGCTGTTGAAGGTTGG+GGG | 0.552652 | 6_4:+76685973 | Msa0997310:intron |
| CTATGGCAGGTACCATACTT+AGG | 0.555359 | 6_4:+76685808 | Msa0997310:intron |
| ACTAAATATAAATAAGTCGT+GGG | 0.563621 | 6_4:+76686213 | Msa0997310:three_prime_UTR |
| CACTCACAGCAGGTTTCTCA+AGG | 0.568836 | 6_4:-76685855 | None:intergenic |
| CAATGGACAAAGAATGGTGT+AGG | 0.571360 | 6_4:+76685563 | Msa0997310:five_prime_UTR |
| TTGAAGACGACATAGCTGTA+AGG | 0.582330 | 6_4:+76685282 | Msa0997310:five_prime_UTR |
| GAGGAATTAATATAGCAAGT+AGG | 0.597914 | 6_4:-76686238 | None:intergenic |
| AAGTGATTTGGTGTGTGAGT+GGG | 0.605770 | 6_4:-76683607 | None:intergenic |
| GGTGTAGAAAATGAGGATGC+AGG | 0.627573 | 6_4:-76685309 | None:intergenic |
| TCACAAGAAAATGCATGACC+TGG | 0.631525 | 6_4:-76686374 | None:intergenic |
| GAAGTGATTTGGTGTGTGAG+TGG | 0.631848 | 6_4:-76683608 | None:intergenic |
| TTGGAGATAGAACAGCTGAA+AGG | 0.635079 | 6_4:-76686319 | None:intergenic |
| TCACAATCGCTGATTCGATG+AGG | 0.682337 | 6_4:+76684068 | Msa0997310:five_prime_UTR |
| TGGCAGGTACCATACTTAGG+TGG | 0.694561 | 6_4:+76685811 | Msa0997310:intron |
| GATGAAGCAGATCTGATGAG+CGG | 0.792182 | 6_4:-76684008 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTATATTTAGTAAT+GGG | - | chr6_4:76686210-76686229 | None:intergenic | 10.0% |
| !!! | TAATTTCAAGTTTTTTTTGT+TGG | + | chr6_4:76684507-76684526 | Msa0997310:intron | 15.0% |
| !!! | AATATTCAACAACATTTTTA+TGG | - | chr6_4:76684671-76684690 | None:intergenic | 15.0% |
| !!! | GGAAACAAAATTATAAATTT+TGG | + | chr6_4:76684819-76684838 | Msa0997310:intron | 15.0% |
| !! | TAATAAATTTATCATGTATG+AGG | - | chr6_4:76685894-76685913 | None:intergenic | 15.0% |
| !! | GACTTATTTATATTTAGTAA+TGG | - | chr6_4:76686211-76686230 | None:intergenic | 15.0% |
| !!! | GAATTATGATGTTTTAAGTT+TGG | + | chr6_4:76684144-76684163 | Msa0997310:intron | 20.0% |
| !!! | TTTTTTTGTTGGTTTATTTG+TGG | + | chr6_4:76684518-76684537 | Msa0997310:intron | 20.0% |
| !!! | AATTTTGGAATAGTAAACAT+AGG | + | chr6_4:76684834-76684853 | Msa0997310:intron | 20.0% |
| !!! | ATTTTGGAATAGTAAACATA+GGG | + | chr6_4:76684835-76684854 | Msa0997310:intron | 20.0% |
| !!! | TTCTTTTTTAGTAAACTCAA+TGG | + | chr6_4:76685546-76685565 | Msa0997310:intron | 20.0% |
| !! | TAAGCATGTAAATTTGTATA+AGG | - | chr6_4:76685726-76685745 | None:intergenic | 20.0% |
| !! | TACAAATTTACATGCTTATA+TGG | + | chr6_4:76685728-76685747 | Msa0997310:intron | 20.0% |
| !!! | AAACTCAATAACTTTTATCA+TGG | - | chr6_4:76685782-76685801 | None:intergenic | 20.0% |
| !! | TTATTGAGTTTAATTCACTA+TGG | + | chr6_4:76685791-76685810 | Msa0997310:intron | 20.0% |
| !!! | ATTGATTCTAACTATAAAAG+TGG | - | chr6_4:76685918-76685937 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTTAGAATCAA+TGG | + | chr6_4:76685917-76685936 | Msa0997310:intron | 20.0% |
| !! | TACTAAATATAAATAAGTCG+TGG | + | chr6_4:76686212-76686231 | Msa0997310:three_prime_UTR | 20.0% |
| !! | ACTAAATATAAATAAGTCGT+GGG | + | chr6_4:76686213-76686232 | Msa0997310:three_prime_UTR | 20.0% |
| ! | TGCTCTAATTTGATATTTCT+AGG | + | chr6_4:76683775-76683794 | Msa0997310:intron | 25.0% |
| !!! | TGATGCAATTGACATTTTTT+AGG | + | chr6_4:76683815-76683834 | Msa0997310:intron | 25.0% |
| !!! | GTTGTTTTTGTTTGTTTTGT+TGG | + | chr6_4:76683945-76683964 | Msa0997310:intron | 25.0% |
| !!! | ATGTGATGTTTAAGTTTTGT+TGG | + | chr6_4:76684300-76684319 | Msa0997310:intron | 25.0% |
| !! | ATGAGAATAAGATGATTTGT+AGG | + | chr6_4:76684339-76684358 | Msa0997310:intron | 25.0% |
| ! | ACTAATCAAAAGCTATACTA+AGG | - | chr6_4:76684964-76684983 | None:intergenic | 25.0% |
| !!! | CTACTTTGAGGAAATATTTT+TGG | - | chr6_4:76684992-76685011 | None:intergenic | 25.0% |
| ! | AAGCACAAACATACATATAT+TGG | - | chr6_4:76685078-76685097 | None:intergenic | 25.0% |
| ! | TCTTTAATGCTCATATTGTT+AGG | + | chr6_4:76685097-76685116 | Msa0997310:intron | 25.0% |
| ! | CAGCTTGAAGTATAAATTTA+TGG | - | chr6_4:76685224-76685243 | None:intergenic | 25.0% |
| ! | TCTGTTGAAGATAAAATACA+AGG | - | chr6_4:76685370-76685389 | None:intergenic | 25.0% |
| ! | ACAATGAGAAAACTATTCTA+GGG | - | chr6_4:76685394-76685413 | None:intergenic | 25.0% |
| ! | TACAATGAGAAAACTATTCT+AGG | - | chr6_4:76685395-76685414 | None:intergenic | 25.0% |
| ! | CTAGTTATCTAACAAGTAAA+AGG | - | chr6_4:76685492-76685511 | None:intergenic | 25.0% |
| !! | ACTTGTTAGATAACTAGATA+TGG | + | chr6_4:76685495-76685514 | Msa0997310:intron | 25.0% |
| !! | TTATCAATTTTACTTACCCA+AGG | - | chr6_4:76685614-76685633 | None:intergenic | 25.0% |
| ! | AGATAGATAATTGCAATATC+AGG | - | chr6_4:76685951-76685970 | None:intergenic | 25.0% |
| !! | TGCAATTATCTATCTTGTTT+AGG | + | chr6_4:76685956-76685975 | Msa0997310:intron | 25.0% |
| ! | ATAGAAATTATTTGTCTCGA+AGG | + | chr6_4:76686106-76686125 | Msa0997310:exon | 25.0% |
| !!! | TTATATTTAGTAATGGGTGT+TGG | - | chr6_4:76686204-76686223 | None:intergenic | 25.0% |
| ! | GATTTTCAGATGAAGTGATT+TGG | - | chr6_4:76683622-76683641 | None:intergenic | 30.0% |
| AGAGCAAAATAAATACGCAA+AGG | - | chr6_4:76683761-76683780 | None:intergenic | 30.0% | |
| GATTTGTAGGTTAATCTGAT+TGG | + | chr6_4:76684352-76684371 | Msa0997310:intron | 30.0% | |
| TTTGTGGATGATTTATCTAC+CGG | + | chr6_4:76684534-76684553 | Msa0997310:intron | 30.0% | |
| TAATCAAAATGCAGCAACAT+GGG | - | chr6_4:76684639-76684658 | None:intergenic | 30.0% | |
| !!! | TTGCTGCATTTTGATTAGTT+TGG | + | chr6_4:76684642-76684661 | Msa0997310:intron | 30.0% |
| AAAATTTGTGCACAGTAGTA+TGG | + | chr6_4:76684734-76684753 | Msa0997310:intron | 30.0% | |
| TGTTGCTGAAAAATAAACTG+TGG | + | chr6_4:76684767-76684786 | Msa0997310:intron | 30.0% | |
| GTTGCTGAAAAATAAACTGT+GGG | + | chr6_4:76684768-76684787 | Msa0997310:intron | 30.0% | |
| AGCTTTCATTGATCATTAGA+TGG | + | chr6_4:76684798-76684817 | Msa0997310:intron | 30.0% | |
| ! | AATCCAAAGTGTTTGTTAAG+TGG | + | chr6_4:76685051-76685070 | Msa0997310:intron | 30.0% |
| !! | TACAATAGAGTGTTTGTTGT+TGG | - | chr6_4:76685333-76685352 | None:intergenic | 30.0% |
| ACAACAAACACTCTATTGTA+TGG | + | chr6_4:76685333-76685352 | Msa0997310:intron | 30.0% | |
| TAAACTCAATGGACAAAGAA+TGG | + | chr6_4:76685557-76685576 | Msa0997310:five_prime_UTR | 30.0% | |
| ATAGTTAGAATCAATGGTCT+TGG | + | chr6_4:76685923-76685942 | Msa0997310:intron | 30.0% | |
| TAAAGTCAGGAGATGAATTA+TGG | + | chr6_4:76686015-76686034 | Msa0997310:CDS | 30.0% | |
| GAGGAATTAATATAGCAAGT+AGG | - | chr6_4:76686241-76686260 | None:intergenic | 30.0% | |
| TTTCCGTGTAATGAAAAAAC+TGG | - | chr6_4:76686296-76686315 | None:intergenic | 30.0% | |
| ! | CACTTTTCTTCACGAATTTG+CGG | + | chr6_4:76683723-76683742 | Msa0997310:intron | 35.0% |
| CTAATCAAAATGCAGCAACA+TGG | - | chr6_4:76684640-76684659 | None:intergenic | 35.0% | |
| TCCTCAAAGTAGATCTTCAT+TGG | + | chr6_4:76685000-76685019 | Msa0997310:intron | 35.0% | |
| TCCAATGAAGATCTACTTTG+AGG | - | chr6_4:76685004-76685023 | None:intergenic | 35.0% | |
| !! | GGAGTAGCTTTTGATTAGTT+TGG | + | chr6_4:76685021-76685040 | Msa0997310:intron | 35.0% |
| TGTTGTTGGTGTAGAAAATG+AGG | - | chr6_4:76685319-76685338 | None:intergenic | 35.0% | |
| TGAGTTTAATTCACTATGGC+AGG | + | chr6_4:76685795-76685814 | Msa0997310:intron | 35.0% | |
| ! | TATCTTGTTTAGGCTGTTGA+AGG | + | chr6_4:76685966-76685985 | Msa0997310:intron | 35.0% |
| !!! | CCTCCAGTTTTTTCATTACA+CGG | + | chr6_4:76686290-76686309 | Msa0997310:three_prime_UTR | 35.0% |
| !! | AAGTGATTTGGTGTGTGAGT+GGG | - | chr6_4:76683610-76683629 | None:intergenic | 40.0% |
| !! | TGTTGGTTTGTTTGTGCTCA+TGG | + | chr6_4:76683962-76683981 | Msa0997310:intron | 40.0% |
| AACTTGGATCGCAAGAGATA+CGG | - | chr6_4:76684588-76684607 | None:intergenic | 40.0% | |
| CACGACAAAGTGAACAAACT+TGG | - | chr6_4:76684604-76684623 | None:intergenic | 40.0% | |
| GGTCCACTTAACAAACACTT+TGG | - | chr6_4:76685057-76685076 | None:intergenic | 40.0% | |
| TTGAAGACGACATAGCTGTA+AGG | + | chr6_4:76685282-76685301 | Msa0997310:five_prime_UTR | 40.0% | |
| CAATGGACAAAGAATGGTGT+AGG | + | chr6_4:76685563-76685582 | Msa0997310:five_prime_UTR | 40.0% | |
| ATTAATCTACCACTCACAGC+AGG | - | chr6_4:76685868-76685887 | None:intergenic | 40.0% | |
| TTGTTTAGGCTGTTGAAGGT+TGG | + | chr6_4:76685970-76685989 | Msa0997310:intron | 40.0% | |
| TGTTTAGGCTGTTGAAGGTT+GGG | + | chr6_4:76685971-76685990 | Msa0997310:intron | 40.0% | |
| GGATTCACGAAAACAGCAAA+TGG | + | chr6_4:76686053-76686072 | Msa0997310:CDS | 40.0% | |
| GAAGCTGCATGAAAAGTAAG+AGG | - | chr6_4:76686260-76686279 | None:intergenic | 40.0% | |
| CCGTGTAATGAAAAAACTGG+AGG | - | chr6_4:76686293-76686312 | None:intergenic | 40.0% | |
| TTGGAGATAGAACAGCTGAA+AGG | - | chr6_4:76686322-76686341 | None:intergenic | 40.0% | |
| !! | TGCAAGACATGCTTTGGAAT+TGG | - | chr6_4:76686341-76686360 | None:intergenic | 40.0% |
| ACTTGATGCAAGACATGCTT+TGG | - | chr6_4:76686347-76686366 | None:intergenic | 40.0% | |
| ! | TTGCATCAAGTCTTTTCACC+AGG | + | chr6_4:76686356-76686375 | Msa0997310:three_prime_UTR | 40.0% |
| TCACAAGAAAATGCATGACC+TGG | - | chr6_4:76686377-76686396 | None:intergenic | 40.0% | |
| !! | GAAGTGATTTGGTGTGTGAG+TGG | - | chr6_4:76683611-76683630 | None:intergenic | 45.0% |
| GATGAAGCAGATCTGATGAG+CGG | - | chr6_4:76684011-76684030 | None:intergenic | 45.0% | |
| !! | TCACAATCGCTGATTCGATG+AGG | + | chr6_4:76684068-76684087 | Msa0997310:five_prime_UTR | 45.0% |
| GCAAATGCTCAGTGAAGTAC+CGG | - | chr6_4:76684556-76684575 | None:intergenic | 45.0% | |
| CCACAATCGATACACGTGAA+CGG | - | chr6_4:76684709-76684728 | None:intergenic | 45.0% | |
| GGTGTAGAAAATGAGGATGC+AGG | - | chr6_4:76685312-76685331 | None:intergenic | 45.0% | |
| GACAAAGAATGGTGTAGGCT+TGG | + | chr6_4:76685568-76685587 | Msa0997310:five_prime_UTR | 45.0% | |
| !! | CTTGGCTTTCTGGATTAGCA+TGG | + | chr6_4:76685586-76685605 | Msa0997310:exon | 45.0% |
| CTATGGCAGGTACCATACTT+AGG | + | chr6_4:76685808-76685827 | Msa0997310:intron | 45.0% | |
| CCAAATGAGCCACCTAAGTA+TGG | - | chr6_4:76685823-76685842 | None:intergenic | 45.0% | |
| CCATACTTAGGTGGCTCATT+TGG | + | chr6_4:76685820-76685839 | Msa0997310:CDS | 45.0% | |
| GTTTAGGCTGTTGAAGGTTG+GGG | + | chr6_4:76685972-76685991 | Msa0997310:intron | 45.0% | |
| TTTAGGCTGTTGAAGGTTGG+GGG | + | chr6_4:76685973-76685992 | Msa0997310:intron | 45.0% | |
| GCAAAAGCAGGGTTAAAGTC+AGG | + | chr6_4:76686002-76686021 | Msa0997310:CDS | 45.0% | |
| TTATGGCCAGCAGATAAGCT+TGG | + | chr6_4:76686032-76686051 | Msa0997310:CDS | 45.0% | |
| GTGAATCCAAGCTTATCTGC+TGG | - | chr6_4:76686041-76686060 | None:intergenic | 45.0% | |
| ! | GTGTGTTTGTAGTGGAGACT+TGG | - | chr6_4:76686182-76686201 | None:intergenic | 45.0% |
| !!! | TACTAATTTTATTATTTAAT+TGG | + | chr6_4:76685178-76685197 | Msa0997310:intron | 5.0% |
| !! | CCGTTCACGTGTATCGATTG+TGG | + | chr6_4:76684706-76684725 | Msa0997310:intron | 50.0% |
| ! | ATGGTGTAGGCTTGGCTTTC+TGG | + | chr6_4:76685576-76685595 | Msa0997310:five_prime_UTR | 50.0% |
| !! | TCTGGATTAGCATGGCACCT+TGG | + | chr6_4:76685594-76685613 | Msa0997310:exon | 50.0% |
| !! | CTGGATTAGCATGGCACCTT+GGG | + | chr6_4:76685595-76685614 | Msa0997310:exon | 50.0% |
| TGGCAGGTACCATACTTAGG+TGG | + | chr6_4:76685811-76685830 | Msa0997310:intron | 50.0% | |
| CACTCACAGCAGGTTTCTCA+AGG | - | chr6_4:76685858-76685877 | None:intergenic | 50.0% | |
| CTTGAGAAACCTGCTGTGAG+TGG | + | chr6_4:76685856-76685875 | Msa0997310:intron | 50.0% | |
| !! | GGGTGTTGGTGTGTTTGTAG+TGG | - | chr6_4:76686190-76686209 | None:intergenic | 50.0% |
| TGGGGGAATGCAGCAAAAGC+AGG | + | chr6_4:76685990-76686009 | Msa0997310:CDS | 55.0% | |
| GGGGGAATGCAGCAAAAGCA+GGG | + | chr6_4:76685991-76686010 | Msa0997310:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 76683586 | 76686413 | 76683586 | ID=Msa0997310;Name=Msa0997310 |
| chr6_4 | mRNA | 76683586 | 76686413 | 76683586 | ID=Msa0997310-mRNA-1;Parent=Msa0997310;Name=Msa0997310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=380|1|1|1|0.4|0.33|6|304|65 |
| chr6_4 | exon | 76683586 | 76683735 | 76683586 | ID=Msa0997310-mRNA-1:exon:14439;Parent=Msa0997310-mRNA-1 |
| chr6_4 | exon | 76683976 | 76684089 | 76683976 | ID=Msa0997310-mRNA-1:exon:14440;Parent=Msa0997310-mRNA-1 |
| chr6_4 | exon | 76685282 | 76685349 | 76685282 | ID=Msa0997310-mRNA-1:exon:14441;Parent=Msa0997310-mRNA-1 |
| chr6_4 | exon | 76685557 | 76685616 | 76685557 | ID=Msa0997310-mRNA-1:exon:14442;Parent=Msa0997310-mRNA-1 |
| chr6_4 | exon | 76685817 | 76685870 | 76685817 | ID=Msa0997310-mRNA-1:exon:14443;Parent=Msa0997310-mRNA-1 |
| chr6_4 | exon | 76685978 | 76686413 | 76685978 | ID=Msa0997310-mRNA-1:exon:14444;Parent=Msa0997310-mRNA-1 |
| chr6_4 | five_prime_UTR | 76683586 | 76683735 | 76683586 | ID=Msa0997310-mRNA-1:five_prime_utr;Parent=Msa0997310-mRNA-1 |
| chr6_4 | five_prime_UTR | 76683976 | 76684089 | 76683976 | ID=Msa0997310-mRNA-1:five_prime_utr;Parent=Msa0997310-mRNA-1 |
| chr6_4 | five_prime_UTR | 76685282 | 76685349 | 76685282 | ID=Msa0997310-mRNA-1:five_prime_utr;Parent=Msa0997310-mRNA-1 |
| chr6_4 | five_prime_UTR | 76685557 | 76685604 | 76685557 | ID=Msa0997310-mRNA-1:five_prime_utr;Parent=Msa0997310-mRNA-1 |
| chr6_4 | CDS | 76685605 | 76685616 | 76685605 | ID=Msa0997310-mRNA-1:cds;Parent=Msa0997310-mRNA-1 |
| chr6_4 | CDS | 76685817 | 76685870 | 76685817 | ID=Msa0997310-mRNA-1:cds;Parent=Msa0997310-mRNA-1 |
| chr6_4 | CDS | 76685978 | 76686109 | 76685978 | ID=Msa0997310-mRNA-1:cds;Parent=Msa0997310-mRNA-1 |
| chr6_4 | three_prime_UTR | 76686110 | 76686413 | 76686110 | ID=Msa0997310-mRNA-1:three_prime_utr;Parent=Msa0997310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
