AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004350 MtrunA17_Chr1g0156901 96.216 370 14 0 1 370 1 370 0.0 728
Msa0004350 MtrunA17_Chr1g0156911 75.706 354 86 0 18 371 5 358 0.0 579
Msa0004350 MtrunA17_Chr1g0156891 72.000 350 97 1 23 371 16 365 0.0 545
Msa0004350 MtrunA17_Chr3g0142921 65.363 358 120 2 18 371 1 358 9.27e-173 485
Msa0004350 MtrunA17_Chr1g0156921 62.674 359 133 1 14 371 6 364 2.96e-171 481
Msa0004350 MtrunA17_Chr1g0156931 60.446 359 141 1 13 371 4 361 9.87e-169 475
Msa0004350 MtrunA17_Chr3g0142941 63.095 336 124 0 35 370 32 367 5.24e-164 463
Msa0004350 MtrunA17_Chr8g0371491 49.133 346 175 1 27 371 13 358 6.69e-125 363
Msa0004350 MtrunA17_Chr5g0405821 50.552 362 173 5 13 371 9 367 1.01e-124 363
Msa0004350 MtrunA17_Chr5g0405831 50.144 347 169 4 27 371 22 366 7.15e-123 358
Msa0004350 MtrunA17_Chr8g0371471 49.138 348 172 3 29 371 16 363 2.53e-120 352
Msa0004350 MtrunA17_Chr8g0371481 48.711 349 173 4 29 371 16 364 4.03e-117 344
Msa0004350 MtrunA17_Chr1g0157001 43.840 349 190 3 22 366 5 351 1.20e-95 290
Msa0004350 MtrunA17_Chr3g0105401 38.462 351 214 2 23 371 1 351 8.73e-91 276
Msa0004350 MtrunA17_Chr5g0438621 39.645 338 195 2 18 354 6 335 2.29e-90 275
Msa0004350 MtrunA17_Chr3g0120861 41.284 327 187 3 48 371 36 360 3.60e-89 273
Msa0004350 MtrunA17_Chr4g0046151 41.325 317 178 2 50 358 36 352 2.35e-87 268
Msa0004350 MtrunA17_Chr5g0432101 42.236 322 178 3 50 368 33 349 2.56e-87 268
Msa0004350 MtrunA17_Chr5g0438631 39.650 343 195 4 17 356 3 336 2.61e-87 267
Msa0004350 MtrunA17_Chr5g0438641 40.308 325 193 1 48 371 30 354 1.19e-84 261
Msa0004350 MtrunA17_Chr2g0320671 39.881 336 198 2 29 363 12 344 2.42e-84 260
Msa0004350 MtrunA17_Chr8g0341001 41.640 317 183 2 45 359 27 343 3.12e-84 259
Msa0004350 MtrunA17_Chr2g0330781 39.937 318 189 2 48 363 29 346 5.65e-81 251
Msa0004350 MtrunA17_Chr2g0283191 38.629 321 187 4 48 358 36 356 1.20e-80 251
Msa0004350 MtrunA17_Chr5g0437421 38.679 318 187 3 49 359 31 347 8.83e-77 241
Msa0004350 MtrunA17_Chr4g0027521 37.654 324 198 2 48 367 25 348 2.26e-74 234
Msa0004350 MtrunA17_Chr8g0380041 37.419 310 186 5 48 353 29 334 1.21e-64 209
Msa0004350 MtrunA17_Chr1g0182811 39.062 320 184 5 50 362 33 348 1.92e-64 209
Msa0004350 MtrunA17_Chr2g0285061 36.129 310 191 5 48 353 30 336 2.57e-62 204
Msa0004350 MtrunA17_Chr3g0086641 35.522 335 209 6 21 352 10 340 5.87e-62 203
Msa0004350 MtrunA17_Chr7g0275011 37.812 320 188 5 50 363 34 348 1.66e-61 202
Msa0004350 MtrunA17_Chr7g0275021 33.803 355 223 6 22 370 10 358 1.82e-61 201
Msa0004350 MtrunA17_Chr1g0189901 37.261 314 190 5 50 359 31 341 8.51e-61 199
Msa0004350 MtrunA17_Chr7g0275001 37.037 324 200 3 50 370 25 347 8.40e-60 197
Msa0004350 MtrunA17_Chr3g0077571 37.299 311 183 7 48 354 28 330 1.88e-58 193
Msa0004350 MtrunA17_Chr4g0008851 35.380 342 203 7 27 359 12 344 2.85e-58 193
Msa0004350 MtrunA17_Chr1g0189891 37.931 319 184 8 50 363 29 338 6.64e-58 192
Msa0004350 MtrunA17_Chr1g0189931 37.383 321 188 6 50 363 32 346 6.31e-57 189
Msa0004350 MtrunA17_Chr8g0374101 33.333 345 218 7 19 354 8 349 6.52e-57 190
Msa0004350 MtrunA17_Chr5g0396511 33.866 313 204 3 52 362 48 359 1.39e-56 189
Msa0004350 MtrunA17_Chr4g0017431 34.551 356 219 7 26 370 8 360 2.74e-56 188
Msa0004350 MtrunA17_Chr6g0463261 70.492 122 36 0 102 223 3 124 2.85e-56 180
Msa0004350 MtrunA17_Chr3g0131321 34.188 351 214 7 24 360 1 348 5.43e-56 187
Msa0004350 MtrunA17_Chr7g0274991 35.093 322 198 5 44 359 27 343 3.83e-55 185
Msa0004350 MtrunA17_Chr6g0457921 35.802 324 195 7 48 363 26 344 8.66e-55 184
Msa0004350 MtrunA17_Chr7g0215961 34.242 330 190 7 50 370 33 344 2.73e-54 182
Msa0004350 MtrunA17_Chr3g0077581 33.232 328 205 8 34 352 20 342 4.65e-54 182
Msa0004350 MtrunA17_Chr2g0294301 32.184 348 221 6 12 354 4 341 4.73e-52 177
Msa0004350 MtrunA17_Chr5g0434621 33.550 307 197 6 51 354 26 328 1.06e-51 176
Msa0004350 MtrunA17_Chr3g0092131 31.034 319 213 6 52 366 25 340 1.55e-50 173
Msa0004350 MtrunA17_Chr2g0294311 33.621 348 207 10 21 354 9 346 1.65e-50 173
Msa0004350 MtrunA17_Chr4g0060811 31.034 319 213 6 52 366 29 344 5.44e-50 171
Msa0004350 MtrunA17_Chr4g0068441 33.929 336 208 7 24 354 15 341 5.79e-50 171
Msa0004350 MtrunA17_Chr8g0380031 32.378 349 212 9 12 356 52 380 2.83e-49 171
Msa0004350 MtrunA17_Chr4g0027571 38.208 212 130 1 153 363 3 214 4.07e-49 165
Msa0004350 MtrunA17_Chr3g0099151 32.448 339 217 6 29 359 66 400 5.49e-49 170
Msa0004350 MtrunA17_Chr3g0099161 33.432 338 206 7 49 371 91 424 8.80e-49 170
Msa0004350 MtrunA17_Chr5g0444401 33.025 324 204 6 48 363 26 344 5.25e-48 166
Msa0004350 MtrunA17_Chr2g0284921 32.051 312 196 7 48 354 32 332 8.43e-46 160
Msa0004350 MtrunA17_Chr2g0284991 32.249 338 212 11 22 353 4 330 1.16e-45 160
Msa0004350 MtrunA17_Chr2g0301641 31.385 325 202 7 50 362 43 358 1.19e-45 161
Msa0004350 MtrunA17_Chr8g0349341 31.642 335 201 11 45 367 28 346 1.28e-45 160
Msa0004350 MtrunA17_Chr3g0085881 32.154 311 191 9 48 354 31 325 3.21e-45 159
Msa0004350 MtrunA17_Chr8g0344941 31.595 326 199 9 50 362 41 355 3.63e-45 159
Msa0004350 MtrunA17_Chr8g0349321 30.909 330 208 10 50 371 37 354 4.61e-44 156
Msa0004350 MtrunA17_Chr2g0284951 33.974 312 184 12 48 353 31 326 6.22e-44 155
Msa0004350 MtrunA17_Chr2g0285001 34.405 311 189 10 48 353 31 331 9.49e-44 155
Msa0004350 MtrunA17_Chr3g0099231 32.087 321 202 7 48 359 26 339 1.10e-42 152
Msa0004350 MtrunA17_Chr8g0344931 31.657 338 215 10 22 354 8 334 1.61e-41 149
Msa0004350 MtrunA17_Chr8g0349301 31.987 297 181 8 50 340 37 318 2.17e-41 147
Msa0004350 MtrunA17_Chr5g0420811 32.484 314 184 12 48 352 31 325 2.25e-38 140
Msa0004350 MtrunA17_Chr7g0229591 40.341 176 105 0 48 223 28 203 6.06e-38 135
Msa0004350 MtrunA17_Chr2g0284941 31.045 335 191 12 28 355 10 311 1.08e-36 136
Msa0004350 MtrunA17_Chr7g0229581 43.382 136 76 1 225 359 8 143 1.70e-35 127
Msa0004350 MtrunA17_Chr8g0370951 31.445 353 192 14 28 352 9 339 4.27e-35 132
Msa0004350 MtrunA17_Chr8g0349331 27.059 340 195 8 29 356 10 308 1.06e-33 127
Msa0004350 MtrunA17_Chr8g0370981 29.720 286 181 7 49 323 43 319 1.05e-31 124
Msa0004350 MtrunA17_Chr2g0283481 29.042 334 210 10 50 363 47 373 2.34e-30 119
Msa0004350 MtrunA17_Chr3g0085231 28.107 338 212 11 23 354 12 324 4.89e-30 118
Msa0004350 MtrunA17_Chr2g0283511 29.217 332 206 11 55 364 36 360 9.69e-30 118
Msa0004350 MtrunA17_Chr7g0273101 28.947 342 206 12 49 363 28 359 2.22e-29 117
Msa0004350 MtrunA17_Chr1g0160031 26.923 364 227 13 26 363 16 366 2.31e-29 117
Msa0004350 MtrunA17_Chr2g0301581 29.464 336 192 13 50 364 34 345 2.35e-29 116
Msa0004350 MtrunA17_Chr3g0104821 28.280 343 204 14 50 364 44 372 5.09e-29 115
Msa0004350 MtrunA17_Chr8g0381581 27.568 370 228 13 26 366 17 375 6.47e-29 115
Msa0004350 MtrunA17_Chr3g0112821 30.060 336 199 12 50 364 30 350 2.57e-28 113
Msa0004350 MtrunA17_Chr1g0160011 26.050 357 226 13 26 356 16 360 4.15e-28 113
Msa0004350 MtrunA17_Chr6g0469511 48.214 112 58 0 48 159 28 139 5.10e-28 107
Msa0004350 MtrunA17_Chr1g0159991 26.171 363 219 13 26 356 13 358 1.15e-27 112
Msa0004350 MtrunA17_Chr2g0301541 28.869 336 194 13 50 364 34 345 1.21e-27 111
Msa0004350 MtrunA17_Chr6g0450701 28.647 377 215 16 24 363 4 363 3.43e-27 110
Msa0004350 MtrunA17_Chr7g0226941 28.161 348 211 12 44 363 27 363 4.86e-27 110
Msa0004350 MtrunA17_Chr7g0254461 29.352 293 174 13 49 321 42 321 5.90e-27 110
Msa0004350 MtrunA17_Chr6g0450711 28.022 364 216 12 29 364 102 447 8.20e-27 110
Msa0004350 MtrunA17_Chr6g0450731 26.364 330 215 9 49 364 32 347 9.12e-27 109
Msa0004350 MtrunA17_Chr4g0018571 39.855 138 82 1 223 359 29 166 1.31e-26 104
Msa0004350 MtrunA17_Chr3g0093031 29.598 348 190 16 50 364 30 355 3.35e-26 107
Msa0004350 MtrunA17_Chr0c01g0489581 29.282 362 209 18 27 364 5 343 4.26e-26 107
Msa0004350 MtrunA17_Chr6g0469521 39.669 121 72 1 225 344 32 152 5.23e-26 102
Msa0004350 MtrunA17_Chr0c01g0489571 29.282 362 209 18 27 364 5 343 6.40e-26 107
Msa0004350 MtrunA17_Chr2g0317261 28.926 363 211 18 26 364 4 343 8.79e-26 106
Msa0004350 MtrunA17_Chr2g0317271 29.201 363 210 18 26 364 4 343 1.04e-25 106
Msa0004350 MtrunA17_Chr1g0160101 26.330 376 214 15 21 356 13 365 1.91e-25 106
Msa0004350 MtrunA17_Chr4g0057991 27.807 374 238 13 17 369 4 366 2.72e-25 105
Msa0004350 MtrunA17_Chr4g0027561 49.474 95 48 0 48 142 28 122 4.96e-25 99.4
Msa0004350 MtrunA17_Chr1g0191461 27.467 375 227 15 20 365 4 362 2.27e-24 102
Msa0004350 MtrunA17_Chr7g0271551 28.657 335 197 15 51 364 37 350 7.41e-24 101
Msa0004350 MtrunA17_Chr1g0159971 25.606 371 226 14 26 362 21 375 7.99e-24 101
Msa0004350 MtrunA17_Chr1g0159981 27.566 341 197 16 49 356 45 368 1.53e-23 100
Msa0004350 MtrunA17_Chr2g0283501 27.596 337 214 12 50 364 31 359 2.04e-23 100
Msa0004350 MtrunA17_Chr8g0352901 25.485 361 234 10 29 363 6 357 2.05e-23 100
Msa0004350 MtrunA17_Chr7g0266061 27.301 326 201 14 48 358 40 344 3.90e-23 99.0
Msa0004350 MtrunA17_Chr6g0450721 27.246 334 205 13 49 364 32 345 9.34e-23 98.2
Msa0004350 MtrunA17_Chr1g0178931 25.152 330 218 12 51 371 38 347 9.79e-23 97.8
Msa0004350 MtrunA17_Chr7g0275291 26.100 341 212 12 50 363 33 360 1.41e-22 97.8
Msa0004350 MtrunA17_Chr7g0226911 24.615 390 220 16 20 363 8 369 5.64e-21 93.2
Msa0004350 MtrunA17_Chr6g0455661 30.047 213 141 5 148 355 238 447 5.69e-21 94.0
Msa0004350 MtrunA17_Chr6g0455661 48.958 96 45 3 49 144 30 121 8.68e-17 81.6
Msa0004350 MtrunA17_Chr6g0459921 30.698 215 137 6 148 355 127 336 9.07e-21 92.4
Msa0004350 MtrunA17_Chr1g0198351 28.529 333 201 13 51 371 44 351 3.32e-20 90.9
Msa0004350 MtrunA17_Chr2g0301571 27.368 285 169 11 99 364 36 301 1.05e-19 88.6
Msa0004350 MtrunA17_Chr2g0321991 46.154 91 47 2 47 136 30 119 1.23e-19 84.0
Msa0004350 MtrunA17_Chr2g0283531 25.150 334 225 10 50 364 31 358 1.40e-19 89.0
Msa0004350 MtrunA17_Chr1g0189921 50.575 87 42 1 50 136 31 116 1.40e-19 84.7
Msa0004350 MtrunA17_Chr8g0339251 27.333 300 197 11 29 320 6 292 1.57e-19 88.6
Msa0004350 MtrunA17_Chr2g0301551 27.018 285 170 10 99 364 36 301 2.07e-19 87.8
Msa0004350 MtrunA17_Chr8g0370961 25.000 204 146 4 153 354 20 218 3.80e-19 85.9
Msa0004350 MtrunA17_Chr7g0226931 23.823 361 213 14 50 363 38 383 4.87e-19 87.8
Msa0004350 MtrunA17_Chr2g0301591 28.669 293 160 12 22 296 10 271 5.79e-19 86.3
Msa0004350 MtrunA17_Chr1g0198381 27.052 329 199 15 51 362 3 307 1.06e-18 85.9
Msa0004350 MtrunA17_Chr8g0347751 25.000 344 216 11 50 363 36 367 1.34e-18 86.3
Msa0004350 MtrunA17_Chr1g0178941 24.779 339 216 14 51 371 41 358 1.49e-18 85.9
Msa0004350 MtrunA17_Chr3g0096551 26.346 353 207 12 50 364 29 366 2.18e-18 85.9
Msa0004350 MtrunA17_Chr3g0112691 27.378 347 197 16 50 364 30 353 8.11e-18 84.0
Msa0004350 MtrunA17_Chr5g0440501 27.397 219 140 5 149 354 10 222 1.83e-16 78.2
Msa0004350 MtrunA17_Chr4g0027581 31.250 144 74 3 240 359 41 183 7.99e-16 75.5
Msa0004350 MtrunA17_Chr8g0370971 36.190 105 63 1 49 149 37 141 3.70e-14 69.7
Msa0004350 MtrunA17_Chr3g0104801 34.752 141 77 6 50 182 44 177 7.49e-14 69.3
Msa0004350 MtrunA17_Chr5g0432081 51.786 56 26 1 309 364 10 64 1.26e-13 65.9
Msa0004350 MtrunA17_Chr4g0018561 52.830 53 25 0 48 100 28 80 3.64e-13 65.1
Msa0004350 MtrunA17_Chr2g0308201 55.556 54 23 1 48 101 33 85 4.16e-13 64.7
Msa0004350 MtrunA17_Chr3g0104831 24.460 278 169 13 115 364 27 291 1.06e-12 68.2
Msa0004350 MtrunA17_Chr2g0301561 28.070 228 138 8 99 309 36 254 3.26e-12 66.2
Msa0004350 MtrunA17_Chr7g0228261 41.538 65 38 0 299 363 10 74 9.50e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004350 AT1G75880.2 51.220 369 179 1 4 371 6 374 1.52e-136 394
Msa0004350 AT1G75880.1 51.351 370 178 2 4 371 6 375 7.16e-136 392
Msa0004350 AT1G75890.2 52.770 343 158 3 29 367 24 366 1.44e-133 386
Msa0004350 AT1G75890.3 52.770 343 158 3 29 367 53 395 2.01e-133 387
Msa0004350 AT1G75900.1 50.568 352 169 3 21 371 17 364 9.03e-132 382
Msa0004350 AT1G75890.1 50.843 356 158 4 29 367 24 379 3.74e-130 378
Msa0004350 AT5G42170.1 52.537 335 155 2 38 371 38 369 2.33e-128 373
Msa0004350 AT1G59406.1 49.148 352 172 5 21 370 2 348 1.54e-119 350
Msa0004350 AT1G59030.1 49.148 352 172 5 21 370 2 348 1.54e-119 350
Msa0004350 AT1G58725.1 49.148 352 172 5 21 370 2 348 1.54e-119 350
Msa0004350 AT3G14820.1 50.926 324 154 3 48 370 30 349 7.39e-119 348
Msa0004350 AT3G43570.1 47.429 350 147 7 23 370 5 319 1.63e-108 321
Msa0004350 AT1G20132.1 48.012 327 169 1 45 370 56 382 2.72e-108 322
Msa0004350 AT1G58520.3 48.968 339 157 7 35 370 16 341 3.88e-108 321
Msa0004350 AT1G58525.1 48.968 339 157 7 35 370 16 341 3.88e-108 321
Msa0004350 AT1G20120.1 45.619 331 179 1 38 367 66 396 5.73e-106 317
Msa0004350 AT2G04570.1 41.846 325 188 1 48 371 26 350 1.59e-91 278
Msa0004350 AT3G43550.1 50.355 282 133 4 30 309 10 286 3.83e-91 275
Msa0004350 AT1G20130.2 42.433 337 180 3 45 370 179 512 2.15e-90 281
Msa0004350 AT1G20130.1 42.433 337 180 3 45 370 199 532 2.90e-90 281
Msa0004350 AT5G03810.1 43.082 318 179 2 48 363 28 345 2.55e-89 273
Msa0004350 AT2G31540.1 40.556 360 206 5 15 368 2 359 1.42e-88 271
Msa0004350 AT1G73610.1 42.045 352 186 8 21 370 8 343 6.03e-88 269
Msa0004350 AT1G06990.1 38.440 359 211 3 22 370 1 359 8.31e-88 269
Msa0004350 AT2G30310.1 42.296 331 182 5 30 355 16 342 5.18e-87 267
Msa0004350 AT2G30220.1 41.617 334 185 5 30 358 16 344 6.80e-87 267
Msa0004350 AT5G22810.1 42.308 338 188 4 30 363 17 351 9.09e-87 266
Msa0004350 AT1G58430.1 40.525 343 199 4 16 355 3 343 6.72e-85 262
Msa0004350 AT5G03820.2 39.785 372 208 4 6 363 8 377 1.21e-84 262
Msa0004350 AT2G40250.1 40.426 329 187 3 44 365 30 356 2.18e-84 261
Msa0004350 AT5G03820.1 40.290 345 201 3 22 363 7 349 1.55e-83 258
Msa0004350 AT2G42990.1 40.308 325 192 2 48 371 26 349 1.98e-83 258
Msa0004350 AT2G24560.1 38.012 342 208 4 18 355 1 342 1.25e-82 256
Msa0004350 AT5G63170.1 39.169 337 186 5 21 355 3 322 6.16e-82 253
Msa0004350 AT4G26790.1 38.602 329 199 3 40 366 18 345 7.85e-81 251
Msa0004350 AT4G26790.2 38.602 329 199 3 40 366 18 345 7.85e-81 251
Msa0004350 AT3G16370.1 38.838 327 198 2 39 363 19 345 1.49e-80 251
Msa0004350 AT3G53100.1 38.439 346 202 3 21 365 10 345 5.08e-80 249
Msa0004350 AT5G45960.1 38.608 316 189 2 48 358 45 360 1.98e-79 248
Msa0004350 AT1G23500.1 41.945 329 174 6 45 370 30 344 3.68e-79 247
Msa0004350 AT1G75920.2 40.173 346 192 3 21 364 4 336 4.47e-78 244
Msa0004350 AT1G75910.1 40.286 350 192 5 18 364 1 336 2.13e-76 239
Msa0004350 AT1G20135.1 39.744 312 173 5 50 359 29 327 1.36e-75 237
Msa0004350 AT1G75920.1 38.440 359 191 4 23 364 1 346 1.34e-73 233
Msa0004350 AT5G45950.1 34.877 324 206 4 48 371 38 356 1.86e-69 222
Msa0004350 AT1G75920.4 39.934 303 171 2 64 364 15 308 9.81e-68 216
Msa0004350 AT5G33370.1 37.059 340 203 5 30 363 10 344 1.08e-62 205
Msa0004350 AT1G29670.1 36.499 337 203 7 23 354 5 335 1.73e-62 204
Msa0004350 AT5G08460.1 35.569 343 214 4 17 353 16 357 2.05e-62 205
Msa0004350 AT4G28780.1 34.286 350 217 5 16 363 7 345 5.67e-62 203
Msa0004350 AT1G29670.2 36.499 337 203 7 23 354 73 403 7.85e-62 204
Msa0004350 AT2G24560.2 36.242 298 186 4 18 311 1 298 1.66e-60 197
Msa0004350 AT3G50400.1 37.224 317 188 7 48 354 32 347 2.49e-60 199
Msa0004350 AT1G75920.3 35.260 346 178 4 21 364 4 305 8.07e-60 196
Msa0004350 AT1G33811.1 33.237 346 213 9 21 354 5 344 3.39e-58 193
Msa0004350 AT5G18430.1 34.770 348 215 4 26 367 10 351 3.66e-57 190
Msa0004350 AT3G04290.1 34.072 361 217 7 19 370 5 353 5.41e-57 190
Msa0004350 AT2G23540.1 34.494 316 197 6 48 354 46 360 3.12e-56 189
Msa0004350 AT4G18970.1 35.161 310 194 5 49 354 27 333 4.21e-56 187
Msa0004350 AT4G18970.2 35.161 310 194 5 49 354 27 333 7.56e-56 188
Msa0004350 AT1G75930.1 35.455 330 198 6 45 370 24 342 7.88e-56 186
Msa0004350 AT5G45670.1 33.038 339 217 6 20 354 2 334 2.32e-55 186
Msa0004350 AT1G29660.1 33.542 319 204 5 40 354 22 336 1.17e-54 184
Msa0004350 AT1G71691.2 36.452 310 188 7 48 354 53 356 1.73e-54 184
Msa0004350 AT4G10950.2 31.190 311 209 4 47 354 68 376 1.50e-53 182
Msa0004350 AT5G15720.1 36.364 319 191 9 49 360 29 342 9.47e-53 179
Msa0004350 AT1G71250.1 32.749 342 220 5 21 354 7 346 3.17e-52 178
Msa0004350 AT5G37690.1 30.499 341 227 7 22 359 2 335 4.85e-52 177
Msa0004350 AT2G19050.1 33.546 313 185 10 48 354 29 324 4.46e-51 174
Msa0004350 AT2G19060.1 34.688 320 184 11 48 359 28 330 4.61e-51 174
Msa0004350 AT4G10950.1 31.190 311 205 5 47 354 68 372 6.29e-51 175
Msa0004350 AT5G41890.1 33.333 369 204 11 4 354 4 348 2.45e-50 173
Msa0004350 AT2G31550.1 39.604 202 120 2 156 355 1 202 3.46e-50 168
Msa0004350 AT2G19010.2 34.505 313 180 11 49 354 59 353 2.81e-49 170
Msa0004350 AT2G19010.1 34.505 313 180 11 49 354 29 323 3.66e-49 169
Msa0004350 AT5G33370.2 34.756 328 195 7 30 350 10 325 3.09e-48 166
Msa0004350 AT1G53920.1 29.738 343 228 7 27 362 25 361 3.92e-48 167
Msa0004350 AT1G74460.1 31.761 318 209 7 52 365 25 338 5.69e-48 166
Msa0004350 AT5G37690.2 29.912 341 221 8 22 359 2 327 2.69e-47 164
Msa0004350 AT5G55050.1 33.232 328 201 9 48 363 37 358 8.28e-45 158
Msa0004350 AT5G40990.1 32.416 327 198 9 50 362 37 354 6.16e-44 156
Msa0004350 AT2G03980.2 32.110 327 175 10 49 352 42 344 2.42e-42 152
Msa0004350 AT2G03980.3 32.110 327 175 10 49 352 42 344 2.42e-42 152
Msa0004350 AT2G03980.1 32.110 327 175 10 49 352 42 344 2.42e-42 152
Msa0004350 AT2G03980.4 32.110 327 175 10 49 352 42 344 2.42e-42 152
Msa0004350 AT4G16230.1 39.462 223 129 3 48 266 28 248 6.77e-42 147
Msa0004350 AT2G19050.2 34.127 252 153 7 48 296 29 270 9.02e-41 145
Msa0004350 AT4G30140.1 31.715 309 192 9 49 354 32 324 2.00e-40 146
Msa0004350 AT1G53940.2 30.960 323 208 8 50 362 39 356 2.82e-40 146
Msa0004350 AT1G71120.1 32.381 315 197 8 48 356 29 333 3.55e-40 145
Msa0004350 AT5G15720.2 35.448 268 162 8 49 309 29 292 8.05e-38 138
Msa0004350 AT3G14225.1 28.875 329 211 8 50 362 37 358 1.65e-37 139
Msa0004350 AT1G71691.3 34.717 265 164 7 48 309 53 311 3.34e-37 137
Msa0004350 AT3G14225.2 29.141 326 210 8 50 362 37 354 4.42e-37 138
Msa0004350 AT1G53990.1 30.061 326 200 9 50 362 35 345 2.47e-36 135
Msa0004350 AT2G04020.1 37.104 221 114 8 49 257 42 249 2.58e-34 127
Msa0004350 AT1G71691.1 32.171 258 167 6 100 354 3 255 1.47e-33 126
Msa0004350 AT2G04020.2 37.681 207 106 7 49 245 42 235 1.88e-33 127
Msa0004350 AT5G15720.3 32.296 257 165 7 111 360 57 311 2.98e-32 124
Msa0004350 AT5G14450.1 28.947 380 216 14 21 363 9 371 9.99e-32 124
Msa0004350 AT1G54790.3 26.149 348 208 13 49 363 31 362 3.02e-29 117
Msa0004350 AT1G53940.1 31.061 264 173 7 50 309 39 297 1.06e-28 114
Msa0004350 AT3G05180.1 27.059 340 215 8 49 363 35 366 2.94e-28 114
Msa0004350 AT5G03610.1 28.117 377 220 13 21 371 6 357 2.49e-27 111
Msa0004350 AT3G48460.1 27.100 369 232 16 15 359 2 357 2.77e-27 111
Msa0004350 AT2G27360.1 28.024 339 209 10 50 363 33 361 6.09e-26 107
Msa0004350 AT1G56670.1 25.893 336 222 11 49 369 39 362 1.74e-25 106
Msa0004350 AT1G09390.1 28.829 333 206 13 49 364 36 354 3.47e-25 105
Msa0004350 AT1G54790.1 25.072 347 213 12 49 363 30 361 3.78e-25 105
Msa0004350 AT1G54000.1 28.011 357 216 15 22 363 8 338 4.17e-25 105
Msa0004350 AT3G26430.1 28.035 346 198 16 44 354 25 354 2.56e-24 103
Msa0004350 AT1G54020.2 28.889 315 195 12 48 354 29 322 7.31e-24 101
Msa0004350 AT1G54010.1 27.326 344 218 12 22 354 8 330 7.59e-24 102
Msa0004350 AT1G28580.1 27.151 372 236 13 16 364 6 365 1.16e-23 101
Msa0004350 AT3G27950.1 26.331 357 227 11 20 354 4 346 5.20e-23 99.4
Msa0004350 AT1G67830.1 25.281 356 222 13 47 369 27 371 1.12e-22 98.6
Msa0004350 AT1G54030.1 24.051 316 204 11 47 354 49 336 1.17e-22 99.0
Msa0004350 AT1G28570.1 27.297 370 231 15 22 364 4 362 1.21e-22 98.6
Msa0004350 AT5G45910.1 26.575 365 233 18 28 364 6 363 1.40e-22 98.2
Msa0004350 AT1G28610.2 26.531 343 213 13 48 364 29 358 4.95e-22 96.7
Msa0004350 AT1G28600.1 26.558 369 230 13 23 364 4 358 7.23e-22 96.3
Msa0004350 AT3G09930.2 27.350 351 202 14 41 370 34 352 1.46e-21 95.1
Msa0004350 AT3G09930.1 27.350 351 202 14 41 370 34 352 1.46e-21 95.1
Msa0004350 AT1G28650.1 27.647 340 208 15 50 363 37 364 2.95e-21 94.4
Msa0004350 AT4G01130.1 24.855 346 214 11 50 363 34 365 3.98e-21 94.0
Msa0004350 AT1G28640.1 26.844 339 212 16 50 363 35 362 4.96e-21 94.0
Msa0004350 AT1G31550.2 26.686 341 211 15 50 364 36 363 2.04e-20 92.0
Msa0004350 AT1G54790.2 24.397 373 209 15 49 363 30 387 3.49e-20 91.7
Msa0004350 AT1G28660.1 26.549 339 213 13 50 363 35 362 3.98e-20 91.3
Msa0004350 AT1G28670.1 27.300 337 214 14 50 363 35 363 7.25e-20 90.5
Msa0004350 AT1G28590.1 26.471 340 214 13 50 364 36 364 9.84e-20 90.1
Msa0004350 AT1G28660.2 25.737 373 238 15 18 363 1 361 1.59e-19 89.4
Msa0004350 AT3G62280.1 28.190 337 199 15 49 363 35 350 3.10e-19 88.6
Msa0004350 AT1G31550.1 26.176 340 211 15 50 364 36 360 6.76e-19 87.8
Msa0004350 AT1G56670.2 26.937 271 176 9 49 309 39 297 1.24e-18 85.9
Msa0004350 AT2G36325.1 26.300 327 204 14 51 363 48 351 3.00e-18 85.5
Msa0004350 AT3G14210.1 28.443 334 192 17 44 359 33 337 1.08e-17 84.3
Msa0004350 AT4G16220.1 46.067 89 46 1 48 136 28 114 1.56e-16 79.0
Msa0004350 AT5G03600.1 25.857 321 203 15 48 358 12 307 6.32e-15 75.5
Msa0004350 AT4G01130.3 22.776 281 182 7 114 363 3 279 8.13e-15 74.7
Msa0004350 AT5G03600.2 25.857 321 203 15 48 358 47 342 8.54e-15 75.5
Msa0004350 AT3G62280.2 28.417 278 161 13 49 309 35 291 4.93e-14 72.4
Msa0004350 AT1G54030.2 22.878 271 175 9 47 309 49 293 9.25e-14 71.6
Msa0004350 AT4G16233.1 35.185 108 65 2 258 360 6 113 3.48e-13 66.6
Msa0004350 AT1G54020.1 25.490 255 166 9 105 354 1 236 2.46e-11 64.3
Msa0004350 AT1G54020.5 25.490 255 166 9 105 354 1 236 2.46e-11 64.3
Msa0004350 AT1G54020.3 25.490 255 166 9 105 354 1 236 2.46e-11 64.3

Find 86 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATCTACCAGCATATT+TGG 0.160114 1_1:+6798025 Msa0004350:CDS
GATTACATTGTGAGGCTTAA+AGG 0.180867 1_1:+6798526 Msa0004350:CDS
ACTTGGAAAATTCCGCTTAA+AGG 0.201215 1_1:-6799126 None:intergenic
CTGTGAACGAATGATTATTT+AGG 0.216898 1_1:+6800324 Msa0004350:exon
CTCCATCATATTGCAGAAAA+AGG 0.239049 1_1:+6797071 Msa0004350:five_prime_UTR
AATTGAAATTACCATAGTTT+TGG 0.285687 1_1:-6799205 None:intergenic
ACGATTTGGATTATGTGTTT+TGG 0.288122 1_1:+6800226 Msa0004350:CDS
TCCTACATACTCTGACCTTT+TGG 0.307233 1_1:+6798672 Msa0004350:CDS
ACCCACTTGTCCCAACGATT+TGG 0.315870 1_1:+6800212 Msa0004350:CDS
GTATTATCAGTTGAAGAATT+AGG 0.335912 1_1:+6797996 Msa0004350:intron
CCTTTAAAATCTTTCCCATA+TGG 0.337601 1_1:-6797389 None:intergenic
TTTAACAACAAGTTGTCAAT+TGG 0.339699 1_1:+6799095 Msa0004350:CDS
AATTCACTAGGCTGGAGATT+TGG 0.355867 1_1:-6798050 None:intergenic
ATTCCAGCAGTGTTTGTGTT+TGG 0.371256 1_1:+6797302 Msa0004350:CDS
GCATGTATTTCTGTAGAATA+GGG 0.379580 1_1:-6800293 None:intergenic
TCCTTTAACAGCAAAATTAG+AGG 0.379617 1_1:+6798115 Msa0004350:CDS
CGGTGCAATTACCCTCCATA+TGG 0.404107 1_1:+6797374 Msa0004350:CDS
AACTTTGCATCCGGTGGTGC+AGG 0.406962 1_1:+6798086 Msa0004350:CDS
GGAGATTCAATCATGGATAC+TGG 0.411214 1_1:+6797323 Msa0004350:CDS
AAATCTCCAGCCTAGTGAAT+TGG 0.416543 1_1:+6798052 Msa0004350:CDS
TGCATGTATTTCTGTAGAAT+AGG 0.418856 1_1:-6800294 None:intergenic
ACTGCTGGAATATAAACATT+TGG 0.427883 1_1:-6797290 None:intergenic
GTATTTAATGCACCACCAAT+GGG 0.439759 1_1:+6798993 Msa0004350:CDS
TTAACAACAAGTTGTCAATT+GGG 0.443641 1_1:+6799096 Msa0004350:CDS
ATTGTAAACAACCAAAACTA+TGG 0.453414 1_1:+6799194 Msa0004350:CDS
AAGTAGCAGGATTGTTTACA+TGG 0.453720 1_1:+6799145 Msa0004350:CDS
AACACATAATCCAAATCGTT+GGG 0.476159 1_1:-6800222 None:intergenic
CCGTTGCTAAATCTTCCTGT+TGG 0.476196 1_1:-6797419 None:intergenic
ATGTAAACAATCCTGCTACT+TGG 0.479168 1_1:-6799143 None:intergenic
TTTAAAGGAGGAATTCCAAC+AGG 0.484136 1_1:+6797404 Msa0004350:CDS
GTGAGGCTTAAAGGACTAGT+TGG 0.485335 1_1:+6798535 Msa0004350:CDS
CAACTTGTAGGGTATGAAGT+TGG 0.489461 1_1:+6800129 Msa0004350:intron
TCTCCAAACACAAACACTGC+TGG 0.493133 1_1:-6797305 None:intergenic
AGTATTTAATGCACCACCAA+TGG 0.496818 1_1:+6798992 Msa0004350:CDS
ACTGGCGTTAACTTTGCATC+CGG 0.499151 1_1:+6798077 Msa0004350:CDS
ATCCAAATCGTTGGGACAAG+TGG 0.508847 1_1:-6800214 None:intergenic
CCTGCCATTGTTCTCTGAAA+CGG 0.511346 1_1:-6799023 None:intergenic
AATCTTTGAATAAGTCTAGC+TGG 0.512632 1_1:-6798507 None:intergenic
CAACTAGGTGCAAGGAGGAT+AGG 0.513503 1_1:+6798969 Msa0004350:CDS
TTAAAGCTGAGTTGACCAAA+AGG 0.515386 1_1:-6798687 None:intergenic
CAGGTGGCTATATCTATGTC+TGG 0.516457 1_1:+6798484 Msa0004350:intron
TTAAAATCTTTCCCATATGG+AGG 0.518010 1_1:-6797386 None:intergenic
GACAGAGGATGTTGTGGCAC+AGG 0.521868 1_1:+6800153 Msa0004350:CDS
AAGTTTAGTACAGATTGAAG+TGG 0.535396 1_1:-6797204 None:intergenic
CAGTGGCCAATTCACTAGGC+TGG 0.536111 1_1:-6798058 None:intergenic
CTCAGCTTTAAATTTCTACC+AGG 0.536839 1_1:+6798699 Msa0004350:CDS
TGGGACAAGTGGGTTGCAAA+TGG 0.537399 1_1:-6800203 None:intergenic
GGTGCAATTACCCTCCATAT+GGG 0.539218 1_1:+6797375 Msa0004350:CDS
ACGCCAGTGGCCAATTCACT+AGG 0.540199 1_1:-6798062 None:intergenic
GGGTATGAAGTTGGAGACAG+AGG 0.544217 1_1:+6800138 Msa0004350:intron
TTCTGTAAACGGATTCAGTA+GGG 0.545237 1_1:-6800260 None:intergenic
AGTATAGAAACTGTAAATAA+CGG 0.545545 1_1:-6797122 None:intergenic
CAGCCTAGTGAATTGGCCAC+TGG 0.548803 1_1:+6798059 Msa0004350:CDS
GGCGTTAACTTTGCATCCGG+TGG 0.549918 1_1:+6798080 Msa0004350:CDS
TTACAATAATATCGAGTAGA+GGG 0.553880 1_1:-6799178 None:intergenic
TAAAATCTTTCCCATATGGA+GGG 0.555342 1_1:-6797385 None:intergenic
AGGATCATATCCTGCACCAC+CGG 0.557628 1_1:-6798096 None:intergenic
GCTGGAATATAAACATTTGG+TGG 0.560701 1_1:-6797287 None:intergenic
TTTACAATAATATCGAGTAG+AGG 0.561107 1_1:-6799179 None:intergenic
AACGGTACACACCCCATTGG+TGG 0.566232 1_1:-6799005 None:intergenic
TGTGTTTGGAGATTCAATCA+TGG 0.568043 1_1:+6797316 Msa0004350:CDS
AGATTTGGATCCAAATATGC+TGG 0.570345 1_1:-6798035 None:intergenic
TTTCTGTAAACGGATTCAGT+AGG 0.573755 1_1:-6800261 None:intergenic
AAACACATAATCCAAATCGT+TGG 0.574159 1_1:-6800223 None:intergenic
GGAGGGTAATTGCACCGAGA+TGG 0.583193 1_1:-6797368 None:intergenic
TATTCAAAGATTACATTGTG+AGG 0.587370 1_1:+6798518 Msa0004350:CDS
TCCAAATCGTTGGGACAAGT+GGG 0.589482 1_1:-6800213 None:intergenic
CCGTTTCAGAGAACAATGGC+AGG 0.591439 1_1:+6799023 Msa0004350:CDS
AAATGTATCAACTAGGTGCA+AGG 0.593045 1_1:+6798961 Msa0004350:CDS
AGGAAGATTTAGCAACGGAA+AGG 0.607707 1_1:+6797424 Msa0004350:CDS
TGAAACGGTACACACCCCAT+TGG 0.610153 1_1:-6799008 None:intergenic
ACCAAAAGGTCAGAGTATGT+AGG 0.611727 1_1:-6798673 None:intergenic
CATGTATTTCTGTAGAATAG+GGG 0.613238 1_1:-6800292 None:intergenic
ACAACATGACAACACCATCT+CGG 0.621905 1_1:+6797354 Msa0004350:CDS
TTCAGAGAACAATGGCAGGA+GGG 0.626380 1_1:+6799027 Msa0004350:CDS
TATATACCTACAAAATCCGA+CGG 0.635287 1_1:-6797449 None:intergenic
TTGGGATTGATACCTTTAAG+CGG 0.640538 1_1:+6799114 Msa0004350:CDS
CCAACAGGAAGATTTAGCAA+CGG 0.641174 1_1:+6797419 Msa0004350:CDS
ATAAAGGAAATGTATCAACT+AGG 0.641574 1_1:+6798954 Msa0004350:intron
TTTCAGAGAACAATGGCAGG+AGG 0.642795 1_1:+6799026 Msa0004350:CDS
TAGCAACGGAAAGGTTCCGT+CGG 0.666232 1_1:+6797433 Msa0004350:CDS
GTTGGAGACAGAGGATGTTG+TGG 0.669718 1_1:+6800147 Msa0004350:CDS
GGATGCAAAGTTAACGCCAG+TGG 0.678422 1_1:-6798075 None:intergenic
TATTTAATGCACCACCAATG+GGG 0.704341 1_1:+6798994 Msa0004350:CDS
TGTATCAACTAGGTGCAAGG+AGG 0.714837 1_1:+6798964 Msa0004350:CDS
TGTACCGTTTCAGAGAACAA+TGG 0.733354 1_1:+6799019 Msa0004350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATATATGAAATAAAAA+AGG + chr1_1:6797493-6797512 Msa0004350:intron 10.0%
!! TCAATATATGAAATAAAAAA+GGG + chr1_1:6797494-6797513 Msa0004350:intron 10.0%
!!! TTTACTTATATTTTTTGTTA+GGG - chr1_1:6797842-6797861 None:intergenic 10.0%
!!! TTTTACTTATATTTTTTGTT+AGG - chr1_1:6797843-6797862 None:intergenic 10.0%
!!! TTTAGAATAAATTATCAATT+TGG + chr1_1:6798148-6798167 Msa0004350:intron 10.0%
!!! TATTATATTTTTATAATTCG+AGG - chr1_1:6798203-6798222 None:intergenic 10.0%
!! TATAAATAGTTACTTATAGT+AGG + chr1_1:6797519-6797538 Msa0004350:intron 15.0%
!! ATGATTATTATTAATCAATC+AGG - chr1_1:6798310-6798329 None:intergenic 15.0%
!! AAATTAACAAGTTTCATATT+TGG + chr1_1:6798439-6798458 Msa0004350:intron 15.0%
!! TTCATGTATATTTATATAAC+AGG + chr1_1:6798465-6798484 Msa0004350:intron 15.0%
!! CTATTAAGATGATATATTAT+TGG - chr1_1:6799533-6799552 None:intergenic 15.0%
!!! AAAATGAATACTTCTATTTT+AGG + chr1_1:6799605-6799624 Msa0004350:intron 15.0%
!!! TAAATTAAGAGAATTTTATG+TGG - chr1_1:6799723-6799742 None:intergenic 15.0%
!! AATGAAATCAATATGAAATT+AGG - chr1_1:6800014-6800033 None:intergenic 15.0%
!!! TGAAAAGATTTTTTTTTCAA+AGG - chr1_1:6800111-6800130 None:intergenic 15.0%
!!! GGTATATAATTTTGTTAACT+AGG - chr1_1:6797104-6797123 None:intergenic 20.0%
!! AGTATAGAAACTGTAAATAA+CGG - chr1_1:6797125-6797144 None:intergenic 20.0%
!! TAAGTAAAAGAAGTTGTATT+TGG + chr1_1:6797854-6797873 Msa0004350:intron 20.0%
!! TTAGAGACTAAATTAAGTAA+AGG + chr1_1:6798365-6798384 Msa0004350:intron 20.0%
!! TAGAGACTAAATTAAGTAAA+GGG + chr1_1:6798366-6798385 Msa0004350:intron 20.0%
!! ATGTATATTTATATAACAGG+TGG + chr1_1:6798468-6798487 Msa0004350:intron 20.0%
!! TAAAATTATATAGATGTACC+TGG - chr1_1:6798720-6798739 None:intergenic 20.0%
!! TTCTTGTGTTTACAATATAA+AGG + chr1_1:6798938-6798957 Msa0004350:intron 20.0%
!!! AATTGAAATTACCATAGTTT+TGG - chr1_1:6799208-6799227 None:intergenic 20.0%
!! CTAACTCAATCTTATAAAAA+CGG + chr1_1:6799257-6799276 Msa0004350:intron 20.0%
!!! TTTTTAAATTATGTGTGTTC+CGG - chr1_1:6799454-6799473 None:intergenic 20.0%
!!! AAAATATCTTAGTGTTTTTG+TGG + chr1_1:6800043-6800062 Msa0004350:intron 20.0%
!!! AAAAAATCTTTTCAACTTGT+AGG + chr1_1:6800117-6800136 Msa0004350:intron 20.0%
!!! AAAAATCTTTTCAACTTGTA+GGG + chr1_1:6800118-6800137 Msa0004350:intron 20.0%
! ACAGGGAAAAATAATAAGAT+GGG - chr1_1:6797169-6797188 None:intergenic 25.0%
! AACAGGGAAAAATAATAAGA+TGG - chr1_1:6797170-6797189 None:intergenic 25.0%
! ATTGAAGTGGAAAAAAGATA+AGG - chr1_1:6797194-6797213 None:intergenic 25.0%
! TGTAACTATAACACTATGTT+TGG - chr1_1:6797724-6797743 None:intergenic 25.0%
!! TGTTATAGTTACATTTTGCT+TGG + chr1_1:6797731-6797750 Msa0004350:intron 25.0%
! GTATAGGTTTAATCAATGAA+TGG - chr1_1:6797881-6797900 None:intergenic 25.0%
! ACTGCAACAAAAATTAGTAT+AGG - chr1_1:6797897-6797916 None:intergenic 25.0%
! ATATTAACATACACACATCT+TGG - chr1_1:6797949-6797968 None:intergenic 25.0%
! GTATTATCAGTTGAAGAATT+AGG + chr1_1:6797996-6798015 Msa0004350:intron 25.0%
! TATTCAAAGATTACATTGTG+AGG + chr1_1:6798518-6798537 Msa0004350:CDS 25.0%
!!! CTTTTTTATATATGTGATGC+TGG + chr1_1:6798864-6798883 Msa0004350:intron 25.0%
! ATAAAGGAAATGTATCAACT+AGG + chr1_1:6798954-6798973 Msa0004350:intron 25.0%
! TTTAACAACAAGTTGTCAAT+TGG + chr1_1:6799095-6799114 Msa0004350:CDS 25.0%
! TTAACAACAAGTTGTCAATT+GGG + chr1_1:6799096-6799115 Msa0004350:CDS 25.0%
! TTACAATAATATCGAGTAGA+GGG - chr1_1:6799181-6799200 None:intergenic 25.0%
! TTTACAATAATATCGAGTAG+AGG - chr1_1:6799182-6799201 None:intergenic 25.0%
! ATTGTAAACAACCAAAACTA+TGG + chr1_1:6799194-6799213 Msa0004350:CDS 25.0%
! TAATTAGATCCTAGAAAACA+TGG + chr1_1:6799315-6799334 Msa0004350:intron 25.0%
! TAAATTATCCTTACTTTGAG+AGG + chr1_1:6799495-6799514 Msa0004350:intron 25.0%
GGAAAAAAGATAAGGTAACA+GGG - chr1_1:6797186-6797205 None:intergenic 30.0%
TGGAAAAAAGATAAGGTAAC+AGG - chr1_1:6797187-6797206 None:intergenic 30.0%
AAGTTTAGTACAGATTGAAG+TGG - chr1_1:6797207-6797226 None:intergenic 30.0%
ACTGCTGGAATATAAACATT+TGG - chr1_1:6797293-6797312 None:intergenic 30.0%
TAAAATCTTTCCCATATGGA+GGG - chr1_1:6797388-6797407 None:intergenic 30.0%
TTAAAATCTTTCCCATATGG+AGG - chr1_1:6797389-6797408 None:intergenic 30.0%
!! CCTTTAAAATCTTTCCCATA+TGG - chr1_1:6797392-6797411 None:intergenic 30.0%
! CCATATGGGAAAGATTTTAA+AGG + chr1_1:6797389-6797408 Msa0004350:CDS 30.0%
!! TATGGGAAAGATTTTAAAGG+AGG + chr1_1:6797392-6797411 Msa0004350:CDS 30.0%
TATATACCTACAAAATCCGA+CGG - chr1_1:6797452-6797471 None:intergenic 30.0%
ACTATAACACTATGTTTGGA+AGG - chr1_1:6797720-6797739 None:intergenic 30.0%
AGAATATCTACCAGCATATT+TGG + chr1_1:6798025-6798044 Msa0004350:CDS 30.0%
TCCTTTAACAGCAAAATTAG+AGG + chr1_1:6798115-6798134 Msa0004350:CDS 30.0%
!!! ACCTCTAATTTTGCTGTTAA+AGG - chr1_1:6798119-6798138 None:intergenic 30.0%
TTCGAGGACTAAACTAAAAA+GGG - chr1_1:6798187-6798206 None:intergenic 30.0%
ATTCGAGGACTAAACTAAAA+AGG - chr1_1:6798188-6798207 None:intergenic 30.0%
AATCTTTGAATAAGTCTAGC+TGG - chr1_1:6798510-6798529 None:intergenic 30.0%
TACCACAAGAAAAAGACTAT+TGG - chr1_1:6798587-6798606 None:intergenic 30.0%
!! ATATAAAAAAGTGCTGCTAC+AGG - chr1_1:6798855-6798874 None:intergenic 30.0%
TATATATGTGATGCTGGTAA+TGG + chr1_1:6798870-6798889 Msa0004350:intron 30.0%
TCTTATAAAAACGGCTTGTA+TGG + chr1_1:6799266-6799285 Msa0004350:intron 30.0%
AATCTAAACCTCTCAAAGTA+AGG - chr1_1:6799506-6799525 None:intergenic 30.0%
!! ATTAGAAAGAAGTGTTAGAG+AGG + chr1_1:6799743-6799762 Msa0004350:intron 30.0%
AACACATAATCCAAATCGTT+GGG - chr1_1:6800225-6800244 None:intergenic 30.0%
AAACACATAATCCAAATCGT+TGG - chr1_1:6800226-6800245 None:intergenic 30.0%
!! ACGATTTGGATTATGTGTTT+TGG + chr1_1:6800226-6800245 Msa0004350:CDS 30.0%
!! CGATTTGGATTATGTGTTTT+GGG + chr1_1:6800227-6800246 Msa0004350:CDS 30.0%
! CATGTATTTCTGTAGAATAG+GGG - chr1_1:6800295-6800314 None:intergenic 30.0%
! GCATGTATTTCTGTAGAATA+GGG - chr1_1:6800296-6800315 None:intergenic 30.0%
! TGCATGTATTTCTGTAGAAT+AGG - chr1_1:6800297-6800316 None:intergenic 30.0%
CTGTGAACGAATGATTATTT+AGG + chr1_1:6800324-6800343 Msa0004350:exon 30.0%
! CTTTTTCTGCAATATGATGG+AGG - chr1_1:6797073-6797092 None:intergenic 35.0%
CTCCATCATATTGCAGAAAA+AGG + chr1_1:6797071-6797090 Msa0004350:five_prime_UTR 35.0%
! CTCCTTTTTCTGCAATATGA+TGG - chr1_1:6797076-6797095 None:intergenic 35.0%
GCTGGAATATAAACATTTGG+TGG - chr1_1:6797290-6797309 None:intergenic 35.0%
TGTGTTTGGAGATTCAATCA+TGG + chr1_1:6797316-6797335 Msa0004350:CDS 35.0%
TTTAAAGGAGGAATTCCAAC+AGG + chr1_1:6797404-6797423 Msa0004350:CDS 35.0%
TTTCTCTCCTATACCAAACA+CGG + chr1_1:6797631-6797650 Msa0004350:intron 35.0%
AGATTTGGATCCAAATATGC+TGG - chr1_1:6798038-6798057 None:intergenic 35.0%
TCGAGGACTAAACTAAAAAG+GGG - chr1_1:6798186-6798205 None:intergenic 35.0%
GATTACATTGTGAGGCTTAA+AGG + chr1_1:6798526-6798545 Msa0004350:CDS 35.0%
! AGCCAATAGTCTTTTTCTTG+TGG + chr1_1:6798582-6798601 Msa0004350:CDS 35.0%
! AGTCTTTTTCTTGTGGTACT+AGG + chr1_1:6798589-6798608 Msa0004350:CDS 35.0%
! TTAAAGCTGAGTTGACCAAA+AGG - chr1_1:6798690-6798709 None:intergenic 35.0%
!! CTCAGCTTTAAATTTCTACC+AGG + chr1_1:6798699-6798718 Msa0004350:CDS 35.0%
AAATGTATCAACTAGGTGCA+AGG + chr1_1:6798961-6798980 Msa0004350:CDS 35.0%
AGTATTTAATGCACCACCAA+TGG + chr1_1:6798992-6799011 Msa0004350:CDS 35.0%
GTATTTAATGCACCACCAAT+GGG + chr1_1:6798993-6799012 Msa0004350:CDS 35.0%
TATTTAATGCACCACCAATG+GGG + chr1_1:6798994-6799013 Msa0004350:CDS 35.0%
TTGGGATTGATACCTTTAAG+CGG + chr1_1:6799114-6799133 Msa0004350:CDS 35.0%
ACTTGGAAAATTCCGCTTAA+AGG - chr1_1:6799129-6799148 None:intergenic 35.0%
ATGTAAACAATCCTGCTACT+TGG - chr1_1:6799146-6799165 None:intergenic 35.0%
AAGTAGCAGGATTGTTTACA+TGG + chr1_1:6799145-6799164 Msa0004350:CDS 35.0%
! GTTATGTGTCCATGTTTTCT+AGG - chr1_1:6799327-6799346 None:intergenic 35.0%
GATAATAGATGTCGATGTGT+CGG - chr1_1:6799362-6799381 None:intergenic 35.0%
TCTAACGAGAAACTCTTCTA+TGG - chr1_1:6799939-6799958 None:intergenic 35.0%
! TTCTGTAAACGGATTCAGTA+GGG - chr1_1:6800263-6800282 None:intergenic 35.0%
! TTTCTGTAAACGGATTCAGT+AGG - chr1_1:6800264-6800283 None:intergenic 35.0%
! GGCAACAAGTTTTCTGTAAA+CGG - chr1_1:6800274-6800293 None:intergenic 35.0%
ATTCCAGCAGTGTTTGTGTT+TGG + chr1_1:6797302-6797321 Msa0004350:CDS 40.0%
GGAGATTCAATCATGGATAC+TGG + chr1_1:6797323-6797342 Msa0004350:CDS 40.0%
ACAACATGACAACACCATCT+CGG + chr1_1:6797354-6797373 Msa0004350:CDS 40.0%
CCAACAGGAAGATTTAGCAA+CGG + chr1_1:6797419-6797438 Msa0004350:CDS 40.0%
AGGAAGATTTAGCAACGGAA+AGG + chr1_1:6797424-6797443 Msa0004350:CDS 40.0%
CGAAGAGACCTAAAAGTGAT+AGG + chr1_1:6797579-6797598 Msa0004350:intron 40.0%
AATTCACTAGGCTGGAGATT+TGG - chr1_1:6798053-6798072 None:intergenic 40.0%
AAATCTCCAGCCTAGTGAAT+TGG + chr1_1:6798052-6798071 Msa0004350:CDS 40.0%
AAGTAAAGGGCAACAACTCA+TGG + chr1_1:6798379-6798398 Msa0004350:intron 40.0%
! TCCTACATACTCTGACCTTT+TGG + chr1_1:6798672-6798691 Msa0004350:CDS 40.0%
ACCAAAAGGTCAGAGTATGT+AGG - chr1_1:6798676-6798695 None:intergenic 40.0%
TGTACCGTTTCAGAGAACAA+TGG + chr1_1:6799019-6799038 Msa0004350:CDS 40.0%
CAACTTGTAGGGTATGAAGT+TGG + chr1_1:6800129-6800148 Msa0004350:intron 40.0%
TCTCCAAACACAAACACTGC+TGG - chr1_1:6797308-6797327 None:intergenic 45.0%
GGTGCAATTACCCTCCATAT+GGG + chr1_1:6797375-6797394 Msa0004350:CDS 45.0%
CCGTTGCTAAATCTTCCTGT+TGG - chr1_1:6797422-6797441 None:intergenic 45.0%
! AAGGTTCCGTCGGATTTTGT+AGG + chr1_1:6797443-6797462 Msa0004350:CDS 45.0%
CGCTCAGATGCGAAGAAAAT+GGG - chr1_1:6797561-6797580 None:intergenic 45.0%
TCGCTCAGATGCGAAGAAAA+TGG - chr1_1:6797562-6797581 None:intergenic 45.0%
ACGAGAGAGACCAAATTGGT+GGG - chr1_1:6797606-6797625 None:intergenic 45.0%
AGAGACGAGAGAGACCAAAT+TGG - chr1_1:6797610-6797629 None:intergenic 45.0%
ATGACCACCGTGTTTGGTAT+AGG - chr1_1:6797641-6797660 None:intergenic 45.0%
TATACCAAACACGGTGGTCA+TGG + chr1_1:6797640-6797659 Msa0004350:intron 45.0%
TTCTCTCCACTTTCTCTCGT+AGG + chr1_1:6797666-6797685 Msa0004350:intron 45.0%
ACTGGCGTTAACTTTGCATC+CGG + chr1_1:6798077-6798096 Msa0004350:CDS 45.0%
CAGGTGGCTATATCTATGTC+TGG + chr1_1:6798484-6798503 Msa0004350:intron 45.0%
! GTGAGGCTTAAAGGACTAGT+TGG + chr1_1:6798535-6798554 Msa0004350:CDS 45.0%
TGTATCAACTAGGTGCAAGG+AGG + chr1_1:6798964-6798983 Msa0004350:CDS 45.0%
! CCTGCCATTGTTCTCTGAAA+CGG - chr1_1:6799026-6799045 None:intergenic 45.0%
TTTCAGAGAACAATGGCAGG+AGG + chr1_1:6799026-6799045 Msa0004350:CDS 45.0%
TTCAGAGAACAATGGCAGGA+GGG + chr1_1:6799027-6799046 Msa0004350:CDS 45.0%
! AGCGGAATTTTCCAAGTAGC+AGG + chr1_1:6799132-6799151 Msa0004350:CDS 45.0%
ACCAAACATGTGTCTGACAC+CGG + chr1_1:6799432-6799451 Msa0004350:intron 45.0%
TCCAAATCGTTGGGACAAGT+GGG - chr1_1:6800216-6800235 None:intergenic 45.0%
ATCCAAATCGTTGGGACAAG+TGG - chr1_1:6800217-6800236 None:intergenic 45.0%
CGGTGCAATTACCCTCCATA+TGG + chr1_1:6797374-6797393 Msa0004350:CDS 50.0%
TAGCAACGGAAAGGTTCCGT+CGG + chr1_1:6797433-6797452 Msa0004350:CDS 50.0%
!! TGGTGGGGCCTATCACTTTT+AGG - chr1_1:6797590-6797609 None:intergenic 50.0%
AGTGATAGGCCCCACCAATT+TGG + chr1_1:6797593-6797612 Msa0004350:intron 50.0%
CGAGAGAGACCAAATTGGTG+GGG - chr1_1:6797605-6797624 None:intergenic 50.0%
GACGAGAGAGACCAAATTGG+TGG - chr1_1:6797607-6797626 None:intergenic 50.0%
CTCTCCTATACCAAACACGG+TGG + chr1_1:6797634-6797653 Msa0004350:intron 50.0%
AAGACCATGACCACCGTGTT+TGG - chr1_1:6797647-6797666 None:intergenic 50.0%
GGATGCAAAGTTAACGCCAG+TGG - chr1_1:6798078-6798097 None:intergenic 50.0%
AGGATCATATCCTGCACCAC+CGG - chr1_1:6798099-6798118 None:intergenic 50.0%
CAACTAGGTGCAAGGAGGAT+AGG + chr1_1:6798969-6798988 Msa0004350:CDS 50.0%
TGAAACGGTACACACCCCAT+TGG - chr1_1:6799011-6799030 None:intergenic 50.0%
CCGTTTCAGAGAACAATGGC+AGG + chr1_1:6799023-6799042 Msa0004350:CDS 50.0%
! TCCGGTGTCAGACACATGTT+TGG - chr1_1:6799436-6799455 None:intergenic 50.0%
GGGTATGAAGTTGGAGACAG+AGG + chr1_1:6800138-6800157 Msa0004350:intron 50.0%
GTTGGAGACAGAGGATGTTG+TGG + chr1_1:6800147-6800166 Msa0004350:CDS 50.0%
!! TGGGACAAGTGGGTTGCAAA+TGG - chr1_1:6800206-6800225 None:intergenic 50.0%
ACCCACTTGTCCCAACGATT+TGG + chr1_1:6800212-6800231 Msa0004350:CDS 50.0%
GGAGGGTAATTGCACCGAGA+TGG - chr1_1:6797371-6797390 None:intergenic 55.0%
CTCCACTTTCTCTCGTAGGC+AGG + chr1_1:6797670-6797689 Msa0004350:intron 55.0%
TGCCTGCCTACGAGAGAAAG+TGG - chr1_1:6797675-6797694 None:intergenic 55.0%
CAGTGGCCAATTCACTAGGC+TGG - chr1_1:6798061-6798080 None:intergenic 55.0%
CAGCCTAGTGAATTGGCCAC+TGG + chr1_1:6798059-6798078 Msa0004350:CDS 55.0%
ACGCCAGTGGCCAATTCACT+AGG - chr1_1:6798065-6798084 None:intergenic 55.0%
GGCGTTAACTTTGCATCCGG+TGG + chr1_1:6798080-6798099 Msa0004350:CDS 55.0%
AACTTTGCATCCGGTGGTGC+AGG + chr1_1:6798086-6798105 Msa0004350:CDS 55.0%
AACGGTACACACCCCATTGG+TGG - chr1_1:6799008-6799027 None:intergenic 55.0%
GACAGAGGATGTTGTGGCAC+AGG + chr1_1:6800153-6800172 Msa0004350:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6797025 6800417 6797025 ID=Msa0004350;Name=Msa0004350
chr1_1 mRNA 6797025 6800417 6797025 ID=Msa0004350-mRNA-1;Parent=Msa0004350;Name=Msa0004350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=136|1|1|1|1|1|5|88|371
chr1_1 exon 6797025 6797464 6797025 ID=Msa0004350-mRNA-1:exon:2357;Parent=Msa0004350-mRNA-1
chr1_1 exon 6798006 6798136 6798006 ID=Msa0004350-mRNA-1:exon:2358;Parent=Msa0004350-mRNA-1
chr1_1 exon 6798487 6798720 6798487 ID=Msa0004350-mRNA-1:exon:2359;Parent=Msa0004350-mRNA-1
chr1_1 exon 6798960 6799215 6798960 ID=Msa0004350-mRNA-1:exon:2360;Parent=Msa0004350-mRNA-1
chr1_1 exon 6800139 6800417 6800139 ID=Msa0004350-mRNA-1:exon:2361;Parent=Msa0004350-mRNA-1
chr1_1 five_prime_UTR 6797025 6797160 6797025 ID=Msa0004350-mRNA-1:five_prime_utr;Parent=Msa0004350-mRNA-1
chr1_1 CDS 6797161 6797464 6797161 ID=Msa0004350-mRNA-1:cds;Parent=Msa0004350-mRNA-1
chr1_1 CDS 6798006 6798136 6798006 ID=Msa0004350-mRNA-1:cds;Parent=Msa0004350-mRNA-1
chr1_1 CDS 6798487 6798720 6798487 ID=Msa0004350-mRNA-1:cds;Parent=Msa0004350-mRNA-1
chr1_1 CDS 6798960 6799215 6798960 ID=Msa0004350-mRNA-1:cds;Parent=Msa0004350-mRNA-1
chr1_1 CDS 6800139 6800329 6800139 ID=Msa0004350-mRNA-1:cds;Parent=Msa0004350-mRNA-1
chr1_1 three_prime_UTR 6800330 6800417 6800330 ID=Msa0004350-mRNA-1:three_prime_utr;Parent=Msa0004350-mRNA-1
Gene Sequence

>Msa0004350

ATGTTCCCATCTTATTATTTTTCCCTGTTACCTTATCTTTTTTCCACTTCAATCTGTACTAAACTTCTTCTACGTTTGACAATATTTTTAGTTGTTTTTTGCAAAACAAATGCTGTTTTGAAACTACCACCAAATGTTTATATTCCAGCAGTGTTTGTGTTTGGAGATTCAATCATGGATACTGGAAATAACAACAACATGACAACACCATCTCGGTGCAATTACCCTCCATATGGGAAAGATTTTAAAGGAGGAATTCCAACAGGAAGATTTAGCAACGGAAAGGTTCCGTCGGATTTTGTAGTTGAAGAATTAGGCATTAAAGAATATCTACCAGCATATTTGGATCCAAATCTCCAGCCTAGTGAATTGGCCACTGGCGTTAACTTTGCATCCGGTGGTGCAGGATATGATCCTTTAACAGCAAAATTAGAGGTGGCTATATCTATGTCTGGCCAGCTAGACTTATTCAAAGATTACATTGTGAGGCTTAAAGGACTAGTTGGTGAAGATAGAGCAAATTTCATCTTAGCCAATAGTCTTTTTCTTGTGGTACTAGGAAGCAATGACATTTCTAACACGTACTACTTGTCTCATTTAAGACAAGCACAATATGACTTTCCTACATACTCTGACCTTTTGGTCAACTCAGCTTTAAATTTCTACCAGGAAATGTATCAACTAGGTGCAAGGAGGATAGGAGTATTTAATGCACCACCAATGGGGTGTGTACCGTTTCAGAGAACAATGGCAGGAGGGATAATAAGAACATGTGTGCAAGAGTACAATGATGCAGCTGTGTTTTTTAACAACAAGTTGTCAATTGGGATTGATACCTTTAAGCGGAATTTTCCAAGTAGCAGGATTGTTTACATGGATGTTTACAACCCTCTACTCGATATTATTGTAAACAACCAAAACTATGGGTATGAAGTTGGAGACAGAGGATGTTGTGGCACAGGCACACTAGAAGTTACTTATTTATGCAACCATTTGCAACCCACTTGTCCCAACGATTTGGATTATGTGTTTTGGGACAGTTTTCACCCTACTGAATCCGTTTACAGAAAACTTGTTGCCCCTATTCTACAGAAATACATGCAGCAGTTACTGTGA
Protein sequence

>Msa0004350

MFPSYYFSLLPYLFSTSICTKLLLRLTIFLVVFCKTNAVLKLPPNVYIPAVFVFGDSIMDTGNNNNMTTPSRCNYPPYGKDFKGGIPTGRFSNGKVPSDFVVEELGIKEYLPAYLDPNLQPSELATGVNFASGGAGYDPLTAKLEVAISMSGQLDLFKDYIVRLKGLVGEDRANFILANSLFLVVLGSNDISNTYYLSHLRQAQYDFPTYSDLLVNSALNFYQEMYQLGARRIGVFNAPPMGCVPFQRTMAGGIIRTCVQEYNDAAVFFNNKLSIGIDTFKRNFPSSRIVYMDVYNPLLDIIVNNQNYGYEVGDRGCCGTGTLEVTYLCNHLQPTCPNDLDYVFWDSFHPTESVYRKLVAPILQKYMQQLL*