AlfalfaGEDB | Msa1043420

M. sativa cultivar zhongmu-4 / Msa1043420

KEGG: -
GO: -
PFAM: PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043420	KEH25938.1	80.691	492	94	1	84	574	31	522	0.0	819

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043420	sp\|V9M398\|RUN1_VITRO	40.486	494	284	5	85	573	60	548	1.51e-107	355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043420	A0A072UA30	80.691	492	94	1	84	574	31	522	0.0	819

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002460	Msa1043420	0.811793	5.861340e-51	-8.615850e-47
Msa0045790	Msa1043420	0.805585	1.243509e-49	-8.615850e-47
Msa0046160	Msa1043420	0.803154	3.991645e-49	-8.615850e-47
Msa0204840	Msa1043420	0.855054	8.156961e-62	-8.615850e-47
Msa0219590	Msa1043420	0.806281	8.877911e-50	-8.615850e-47
Msa0358890	Msa1043420	0.810794	9.654843e-51	-8.615850e-47
Msa0468800	Msa1043420	0.802199	6.282817e-49	-8.615850e-47
Msa0559500	Msa1043420	0.803837	2.880413e-49	-8.615850e-47
Msa0572480	Msa1043420	0.808431	3.107308e-50	-8.615850e-47
Msa0579660	Msa1043420	0.801866	7.355782e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043420	MtrunA17_Chr4g0041611	77.000	500	115	0	84	583	53	552	0.0	782
Msa1043420	MtrunA17_Chr4g0042011	58.333	492	203	2	84	574	57	547	0.0	572
Msa1043420	MtrunA17_Chr4g0041441	55.847	496	217	2	84	578	38	532	0.0	560
Msa1043420	MtrunA17_Chr4g0041931	56.883	494	209	4	84	574	56	548	0.0	544
Msa1043420	MtrunA17_Chr4g0041231	55.315	508	225	2	84	590	55	561	0.0	540
Msa1043420	MtrunA17_Chr4g0041241	55.804	491	215	2	84	573	55	544	1.87e-177	530
Msa1043420	MtrunA17_Chr4g0041941	51.451	517	245	6	84	595	42	557	3.40e-171	512
Msa1043420	MtrunA17_Chr6g0486521	54.675	492	220	3	84	573	53	543	8.65e-167	508
Msa1043420	MtrunA17_Chr6g0486271	52.846	492	229	3	84	573	53	543	4.22e-166	489
Msa1043420	MtrunA17_Chr6g0486731	54.564	493	220	4	84	573	53	544	1.70e-165	497

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043420	AT5G17680.1	40.733	491	281	4	84	573	51	532	1.97e-119	384
Msa1043420	AT5G17680.2	40.404	495	278	6	84	573	51	533	3.15e-119	383
Msa1043420	AT5G18360.1	39.484	504	274	12	85	573	49	536	1.82e-98	320
Msa1043420	AT5G36930.3	37.800	500	291	7	83	574	46	533	3.87e-96	318
Msa1043420	AT5G36930.2	37.800	500	291	7	83	574	49	536	7.36e-96	318
Msa1043420	AT5G36930.4	37.800	500	291	7	83	574	46	533	7.64e-96	318
Msa1043420	AT5G36930.1	37.800	500	291	7	83	574	46	533	7.64e-96	318
Msa1043420	AT4G16950.5	38.124	501	285	9	85	575	45	530	1.92e-90	305
Msa1043420	AT5G18370.1	36.986	511	293	8	85	574	94	596	2.06e-90	303
Msa1043420	AT4G16950.6	38.124	501	285	9	85	575	45	530	2.16e-90	305

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Find 112 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGATATCATGAG+TGG	0.594376	7_2:-1619299	Msa1043420:CDS
AACAAAATTTCAACTTTACA+TGG	0.414843	7_2:-1619848	Msa1043420:CDS
AACATTATCAAGAACTACAA+GGG	0.606111	7_2:+1619502	None:intergenic
AAGAAAGTGGAACAGGTTGT+GGG	0.571504	7_2:-1618868	Msa1043420:CDS
AAGAACCAAGAAAGTGGAAC+AGG	0.472893	7_2:-1618875	Msa1043420:CDS
AAGATTCAAAGAAAACTTAG+AGG	0.407361	7_2:-1620246	Msa1043420:CDS
AAGGGCATTATTATGATCCT+GGG	0.474308	7_2:+1619346	None:intergenic
ACACACGTAGCCAATCTCTC+TGG	0.545845	7_2:-1620197	Msa1043420:CDS
ACACGAGAATGTCTAGGTAC+AGG	0.507195	7_2:-1619446	Msa1043420:CDS
ACACTTTAATTGCTAATGGA+TGG	0.538849	7_2:+1619234	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCCATAATTGGACAATATT+TGG	+	chr7_2:1618791-1618810	None:intergenic	30.0%
CGAAAATGACCTATATTACA+GGG	-	chr7_2:1618963-1618982	Msa1043420:CDS	30.0%
GAAAATGACCTATATTACAG+GGG	-	chr7_2:1618964-1618983	Msa1043420:CDS	30.0%
CATGTTAGTGTGAAGAAAAA+TGG	-	chr7_2:1619268-1619287	Msa1043420:CDS	30.0%
TTTACCTTCAAACACAAACT+TGG	+	chr7_2:1619421-1619440	None:intergenic	30.0%
GAAAATTCAATGAAGGAGAA+AGG	+	chr7_2:1619575-1619594	None:intergenic	30.0%
TTAGATGAAAAGAAGGTTTG+GGG	+	chr7_2:1620272-1620291	None:intergenic	30.0%
GTTAGATGAAAAGAAGGTTT+GGG	+	chr7_2:1620273-1620292	None:intergenic	30.0%
TGTTAGATGAAAAGAAGGTT+TGG	+	chr7_2:1620274-1620293	None:intergenic	30.0%
CGATTGAAAGGGAATAAAAT+TGG	+	chr7_2:1620324-1620343	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	1618624	1623352	1618624	ID=Msa1043420;Name=Msa1043420
chr7_2	mRNA	1618624	1623352	1618624	ID=Msa1043420-mRNA-1;Parent=Msa1043420;Name=Msa1043420-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|0.14\|1\|1\|7\|0\|597
chr7_2	exon	1623269	1623352	1623269	ID=Msa1043420-mRNA-1:exon:300;Parent=Msa1043420-mRNA-1
chr7_2	exon	1622674	1622700	1622674	ID=Msa1043420-mRNA-1:exon:299;Parent=Msa1043420-mRNA-1
chr7_2	exon	1622473	1622568	1622473	ID=Msa1043420-mRNA-1:exon:298;Parent=Msa1043420-mRNA-1
chr7_2	exon	1621892	1621932	1621892	ID=Msa1043420-mRNA-1:exon:297;Parent=Msa1043420-mRNA-1
chr7_2	exon	1620179	1620523	1620179	ID=Msa1043420-mRNA-1:exon:296;Parent=Msa1043420-mRNA-1
chr7_2	exon	1618830	1619925	1618830	ID=Msa1043420-mRNA-1:exon:295;Parent=Msa1043420-mRNA-1
chr7_2	exon	1618624	1618728	1618624	ID=Msa1043420-mRNA-1:exon:294;Parent=Msa1043420-mRNA-1
chr7_2	CDS	1623269	1623352	1623269	ID=Msa1043420-mRNA-1:cds;Parent=Msa1043420-mRNA-1
chr7_2	CDS	1622674	1622700	1622674	ID=Msa1043420-mRNA-1:cds;Parent=Msa1043420-mRNA-1
chr7_2	CDS	1622473	1622568	1622473	ID=Msa1043420-mRNA-1:cds;Parent=Msa1043420-mRNA-1
chr7_2	CDS	1621892	1621932	1621892	ID=Msa1043420-mRNA-1:cds;Parent=Msa1043420-mRNA-1
chr7_2	CDS	1620179	1620523	1620179	ID=Msa1043420-mRNA-1:cds;Parent=Msa1043420-mRNA-1
chr7_2	CDS	1618830	1619925	1618830	ID=Msa1043420-mRNA-1:cds;Parent=Msa1043420-mRNA-1
chr7_2	CDS	1618624	1618728	1618624	ID=Msa1043420-mRNA-1:cds;Parent=Msa1043420-mRNA-1

Gene Sequence

>Msa1043420

ATGGAGGCAAAGGAAACTGACGAACCCGATCTTGAGATGCATCTTGGTGTTGACACTGTTCAACGAAACCCTCATCATGATACTTGTGAAGAAAAATGGATGCTTGGACAGATTGGTGAATCCAAGTTTGTGTTTGAAGGTAAAATCATTCAGAAAATGGAGCTTCTAGTACATAGCACATTGAAGTGGAGAAGTTTGTGTTTGAAGGAAAAGAAACTTCAATTAGTTATTACTAATCTTTTAGCACTGGATGATACAAATATCAATAAAGGTGAAAATATATCACAAGAGCTTGTACAAGCCATCGAAGAATCCCATATTTTCATTGTTATCTTCTCAAGAAACTATGCTTCTTCCACATGGTGCTTGCGGGAACTGGCCAAAATTGTTGATTGCATTGAAGAAACAAGACAAACTGTTCTGCCTATTTTCTATGATGTGAGTCCATCTGAGGTACGAAAGCAAACCCGTGATTATGAAAAATCCTTTCGAGAGCATGAAGAAAGATTCAAAGAAAACTTAGAGGAAGTACAAAAATGGAGGGGAGCCCTAACACACGTAGCCAATCTCTCTGGTTGGGATATAAAGGATAAGCCACAATATGAAGAGATTGGAAAAATTATTAAAAAGGTAACATGCTTATTGGGAAACAAAATTTCAACTTTACATGGCAATATAGTTGGGATGCACTCACGAATGGAAGAATTAGAAAAGCTTCTTAATTTGGGCTCACATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGCGGAATAGGGAAGACAACTCTTGCTAAAACTTTGTGTGATAGAATCTCCGATCAATTTGCTGGTTGTTGCTTTGTTGATGATGTAAGTAAAATTTATAGAGGTTATGGCCCAACTGGAGTGCAAAAGCAACTTCTATGTCAAACTCTAAAGGAAGAAAATCTCCAAATATGGAATCATTCTATGGGATCTAATTTGATTCAAACTAGGCTATGTCAAATAAAATCCCTTGTAGTTCTTGATAATGTTGATAAAGTTGAACAACTGGATAAATTAGACATGACACGAGAATGTCTAGGTACAGGGAGTAGAATCATCGTAATTTCCAGAGATGGCCATATCTTGAAAGAGCATGGAGTAGATGAAGTTTACAAAGTTCAACCCCAGGATCATAATAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGAGTGGTTACAGAGACTTGACATATGATGTACTAAAATATGTTGATGGCCATCCATTAGCAATTAAAGTGTTGGGCTCATTTTTGTATGATCGAGAGGTCTCTGAATGGAGAAGTGCATTCGAAAGATTAAGAGAGAATCCAATGACAGATATTATGAAGGTTCTCCGAATTAGTTATGATGGACTAGATGATAAAGAAAAGGAGATTTTTCTAGATATTGCTTGTTTCTTTGATGGAAAAGAGGAGACATATTTGAAGAGAGTTTTAGACTTTCGTGGATTTTATCCTGAAATTGGTTTACATGTTCTGATTGATAAATCATTCATAACCTGTAAGAAGGGGATGATTTCTATTCATGATTTGTTAAAAGAACTTGGCAAGAGCATTGTTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAACAGGTTGTGGGACCACAAGGATTTCCACCATGTTATCTCGGAAAACATGGCTACAGAAAACCTTGAAGCCATAGTTCTGCAGTGGAATCCAGACTATATGAAAGAAATACTGTCACGACCCAAAAACAATCATCGTGACCGGCGCACGAACTAG

Protein sequence

>Msa1043420

MEAKETDEPDLEMHLGVDTVQRNPHHDTCEEKWMLGQIGESKFVFEGKIIQKMELLVHSTLKWRSLCLKEKKLQLVITNLLALDDTNINKGENISQELVQAIEESHIFIVIFSRNYASSTWCLRELAKIVDCIEETRQTVLPIFYDVSPSEVRKQTRDYEKSFREHEERFKENLEEVQKWRGALTHVANLSGWDIKDKPQYEEIGKIIKKVTCLLGNKISTLHGNIVGMHSRMEELEKLLNLGSHDDVRVVGICGMGGIGKTTLAKTLCDRISDQFAGCCFVDDVSKIYRGYGPTGVQKQLLCQTLKEENLQIWNHSMGSNLIQTRLCQIKSLVVLDNVDKVEQLDKLDMTRECLGTGSRIIVISRDGHILKEHGVDEVYKVQPQDHNNALQLFCRKAFKSDDIMSGYRDLTYDVLKYVDGHPLAIKVLGSFLYDREVSEWRSAFERLRENPMTDIMKVLRISYDGLDDKEKEIFLDIACFFDGKEETYLKRVLDFRGFYPEIGLHVLIDKSFITCKKGMISIHDLLKELGKSIVREKSPKEPRKWNRLWDHKDFHHVISENMATENLEAIVLQWNPDYMKEILSRPKNNHRDRRTN*