AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019150 MtrunA17_Chr2g0284681 94.243 608 30 3 1 608 1 603 0.0 1171
Msa1019150 MtrunA17_Chr4g0073741 68.019 616 172 6 1 602 1 605 0.0 855
Msa1019150 MtrunA17_Chr4g0031301 66.831 609 177 6 8 602 9 606 0.0 816
Msa1019150 MtrunA17_Chr4g0031321 66.502 609 179 6 8 602 9 606 0.0 811
Msa1019150 MtrunA17_Chr7g0223181 66.066 610 182 6 8 603 9 607 0.0 809
Msa1019150 MtrunA17_Chr7g0262821 66.010 609 182 6 8 602 9 606 0.0 807
Msa1019150 MtrunA17_Chr7g0223291 66.010 609 182 6 8 602 9 606 0.0 804
Msa1019150 MtrunA17_Chr7g0223741 58.703 586 224 8 5 586 6 577 0.0 658
Msa1019150 MtrunA17_Chr6g0462681 54.366 607 243 7 8 596 9 599 0.0 655
Msa1019150 MtrunA17_Chr8g0388671 55.648 602 236 8 2 587 32 618 0.0 652
Msa1019150 MtrunA17_Chr7g0223751 57.699 565 223 8 8 570 9 559 0.0 650
Msa1019150 MtrunA17_Chr6g0462601 55.390 603 243 5 8 596 9 599 0.0 649
Msa1019150 MtrunA17_Chr7g0223711 57.019 577 226 7 5 579 6 562 0.0 648
Msa1019150 MtrunA17_Chr8g0388761 54.908 601 240 8 3 587 33 618 0.0 648
Msa1019150 MtrunA17_Chr2g0298851 55.412 619 246 11 7 608 8 613 0.0 643
Msa1019150 MtrunA17_Chr5g0427901 53.822 628 250 11 8 608 9 623 0.0 640
Msa1019150 MtrunA17_Chr7g0233311 58.127 566 223 7 8 571 9 562 0.0 636
Msa1019150 MtrunA17_Chr7g0221661 55.065 612 246 9 8 603 9 607 0.0 636
Msa1019150 MtrunA17_Chr8g0350731 57.876 565 222 7 8 570 37 587 0.0 635
Msa1019150 MtrunA17_Chr7g0223731 56.866 568 229 7 5 570 6 559 0.0 632
Msa1019150 MtrunA17_Chr2g0293581 53.485 617 258 9 7 606 9 613 0.0 632
Msa1019150 MtrunA17_Chr7g0223781 57.118 569 227 8 8 574 9 562 0.0 629
Msa1019150 MtrunA17_Chr7g0223721 53.398 618 258 10 8 608 9 613 0.0 623
Msa1019150 MtrunA17_Chr6g0462771 52.310 606 266 5 5 595 6 603 0.0 622
Msa1019150 MtrunA17_Chr6g0462711 52.883 607 262 6 5 595 7 605 0.0 621
Msa1019150 MtrunA17_Chr7g0223801 52.451 612 260 9 8 603 9 605 0.0 620
Msa1019150 MtrunA17_Chr7g0248131 57.192 577 221 11 8 579 9 564 0.0 619
Msa1019150 MtrunA17_Chr7g0223701 56.415 569 233 7 8 570 9 568 0.0 619
Msa1019150 MtrunA17_Chr7g0223031 54.991 571 235 7 5 570 6 559 0.0 619
Msa1019150 MtrunA17_Chr7g0223621 55.221 565 237 7 8 570 9 559 0.0 615
Msa1019150 MtrunA17_Chr7g0225671 53.514 626 258 10 1 608 9 619 0.0 613
Msa1019150 MtrunA17_Chr6g0462641 52.537 611 266 6 1 595 1 603 0.0 612
Msa1019150 MtrunA17_Chr2g0287631 53.560 618 258 9 8 608 9 614 0.0 612
Msa1019150 MtrunA17_Chr7g0248151 57.019 577 220 9 8 579 9 562 0.0 611
Msa1019150 MtrunA17_Chr7g0223851 52.894 622 261 10 5 608 15 622 0.0 608
Msa1019150 MtrunA17_Chr4g0040931 52.265 618 265 10 8 608 9 613 0.0 607
Msa1019150 MtrunA17_Chr2g0298861 52.305 629 258 12 9 608 10 625 0.0 606
Msa1019150 MtrunA17_Chr7g0223631 54.513 565 227 9 8 570 9 545 0.0 595
Msa1019150 MtrunA17_Chr7g0233301 55.458 568 208 8 8 573 9 533 0.0 591
Msa1019150 MtrunA17_Chr7g0217971 51.325 604 240 9 8 595 9 574 0.0 581
Msa1019150 MtrunA17_Chr2g0296391 55.514 535 224 6 4 536 5 527 0.0 579
Msa1019150 MtrunA17_Chr7g0223821 51.278 626 268 10 5 608 6 616 0.0 575
Msa1019150 MtrunA17_Chr4g0012541 49.920 623 271 12 4 608 5 604 0.0 555
Msa1019150 MtrunA17_Chr7g0223831 52.807 570 224 10 5 571 6 533 0.0 550
Msa1019150 MtrunA17_Chr8g0390821 47.813 663 251 14 8 603 11 645 0.0 550
Msa1019150 MtrunA17_Chr7g0215261 52.641 568 218 9 7 571 8 527 0.0 548
Msa1019150 MtrunA17_Chr6g0462611 52.593 540 228 7 71 596 22 547 0.0 544
Msa1019150 MtrunA17_Chr7g0223541 55.200 500 211 5 71 570 31 517 0.0 537
Msa1019150 MtrunA17_Chr2g0331381 51.099 546 190 8 9 552 7 477 0.0 536
Msa1019150 MtrunA17_Chr7g0228281 47.496 619 250 8 7 608 69 629 1.33e-180 525
Msa1019150 MtrunA17_Chr7g0223681 54.451 483 206 6 88 570 2 470 1.42e-176 511
Msa1019150 MtrunA17_Chr2g0293601 52.490 522 200 7 8 527 9 484 6.31e-175 505
Msa1019150 MtrunA17_Chr2g0299921 65.810 389 123 4 8 396 1029 1407 5.55e-167 520
Msa1019150 MtrunA17_Chr2g0299921 65.206 388 124 6 8 394 1413 1790 1.03e-153 484
Msa1019150 MtrunA17_Chr2g0299821 61.596 401 143 5 8 406 9 400 7.87e-166 482
Msa1019150 MtrunA17_Chr2g0299821 52.041 98 37 2 459 549 390 484 1.82e-19 91.7
Msa1019150 MtrunA17_Chr2g0279901 46.477 596 274 16 9 589 57 622 3.26e-163 482
Msa1019150 MtrunA17_Chr2g0299851 63.824 387 130 5 8 394 1038 1414 1.81e-162 501
Msa1019150 MtrunA17_Chr2g0293561 61.765 374 133 4 8 379 9 374 4.58e-162 469
Msa1019150 MtrunA17_Chr4g0049501 44.884 606 294 14 6 597 51 630 7.51e-159 471
Msa1019150 MtrunA17_Chr2g0299791 63.566 387 131 5 8 394 1042 1418 1.15e-156 486
Msa1019150 MtrunA17_Chr6g0462861 44.059 606 279 15 8 587 9 580 1.10e-150 449
Msa1019150 MtrunA17_Chr2g0299881 59.753 405 149 6 9 409 1039 1433 2.63e-149 467
Msa1019150 MtrunA17_Chr2g0299881 60.606 66 22 1 184 249 1414 1475 4.77e-15 79.3
Msa1019150 MtrunA17_Chr2g0277021 45.391 575 283 13 7 575 70 619 1.49e-146 440
Msa1019150 MtrunA17_Chr1g0166551 41.857 614 214 11 8 603 5 493 1.25e-142 423
Msa1019150 MtrunA17_Chr2g0293271 47.865 445 151 6 20 462 43 408 2.74e-131 390
Msa1019150 MtrunA17_Chr1g0151991 61.458 288 105 3 7 292 8 291 1.30e-123 366
Msa1019150 MtrunA17_Chr7g0245521 65.428 269 87 3 8 274 9 273 1.08e-118 353
Msa1019150 MtrunA17_Chr6g0462631 48.529 340 124 5 83 422 9 297 1.78e-95 294
Msa1019150 MtrunA17_Chr6g0462751 44.134 358 133 6 64 419 12 304 7.47e-91 283
Msa1019150 MtrunA17_Chr7g0223671 60.417 192 74 1 71 262 8 197 2.79e-78 246
Msa1019150 MtrunA17_Chr5g0394391 32.157 510 316 12 8 504 29 521 2.08e-76 253
Msa1019150 MtrunA17_Chr4g0004331 34.081 446 270 6 9 441 4 438 2.31e-76 259
Msa1019150 MtrunA17_Chr7g0223761 40.290 345 154 3 240 584 3 295 3.23e-76 246
Msa1019150 MtrunA17_Chr1g0188601 61.658 193 70 2 91 283 3 191 5.28e-76 240
Msa1019150 MtrunA17_Chr2g0331901 31.524 479 301 8 9 473 4 469 1.37e-73 252
Msa1019150 MtrunA17_Chr7g0245531 48.496 266 128 4 306 571 2 258 2.28e-73 238
Msa1019150 MtrunA17_Chr3g0098761 29.331 508 335 9 9 508 4 495 4.40e-69 238
Msa1019150 MtrunA17_Chr5g0444001 31.494 435 281 6 9 437 4 427 3.52e-68 231
Msa1019150 MtrunA17_Chr1g0152001 42.345 307 151 6 317 608 2 297 8.02e-67 221
Msa1019150 MtrunA17_Chr6g0462791 58.889 180 69 3 105 284 1 175 1.37e-65 212
Msa1019150 MtrunA17_Chr7g0223771 65.161 155 52 1 91 245 2 154 3.83e-65 211
Msa1019150 MtrunA17_Chr4g0064621 31.099 537 338 13 8 526 140 662 2.11e-55 199
Msa1019150 MtrunA17_Chr1g0188611 47.600 250 118 5 323 570 1 239 2.94e-55 189
Msa1019150 MtrunA17_Chr7g0223861 66.165 133 43 1 75 207 4 134 3.63e-55 183
Msa1019150 MtrunA17_Chr4g0060241 29.297 512 324 13 8 506 20 506 2.41e-54 194
Msa1019150 MtrunA17_Chr3g0120101 27.599 558 345 16 6 521 24 564 1.52e-52 193
Msa1019150 MtrunA17_Chr4g0046881 61.074 149 51 3 128 276 10 151 3.61e-51 173
Msa1019150 MtrunA17_Chr5g0394231 40.693 231 82 5 71 300 5 181 1.47e-44 156
Msa1019150 MtrunA17_Chr5g0394221 36.727 275 154 8 300 569 69 328 1.76e-44 162
Msa1019150 MtrunA17_Chr6g0462691 53.425 146 64 2 323 468 1 142 4.34e-44 154
Msa1019150 MtrunA17_Chr6g0462701 50.588 170 56 3 102 271 27 168 5.55e-44 154
Msa1019150 MtrunA17_Chr5g0442171 32.174 345 192 12 169 497 1 319 4.94e-41 151
Msa1019150 MtrunA17_Chr2g0284661 67.708 96 31 0 360 455 48 143 3.69e-36 132
Msa1019150 MtrunA17_Chr2g0284661 85.455 55 8 0 224 278 5 59 1.44e-24 99.8
Msa1019150 MtrunA17_Chr6g0481391 53.226 124 53 2 35 158 13 131 1.83e-35 130
Msa1019150 MtrunA17_Chr4g0046871 54.128 109 45 2 333 441 2 105 6.75e-31 116
Msa1019150 MtrunA17_Chr7g0245541 35.897 195 107 3 423 603 1 191 3.70e-28 112
Msa1019150 MtrunA17_Chr6g0462621 67.606 71 22 1 1 70 1 71 3.35e-27 104
Msa1019150 MtrunA17_Chr7g0223691 70.769 65 17 1 8 70 9 73 1.66e-24 97.4
Msa1019150 MtrunA17_Chr6g0481381 62.162 74 28 0 175 248 1 74 2.69e-24 100
Msa1019150 MtrunA17_Chr1g0188591 61.765 68 24 1 5 70 6 73 4.36e-23 93.6
Msa1019150 MtrunA17_Chr7g0223791 51.220 82 32 2 53 134 18 91 1.99e-18 83.6
Msa1019150 MtrunA17_Chr7g0223791 37.975 79 49 0 492 570 90 168 3.75e-12 65.5
Msa1019150 MtrunA17_Chr7g0223881 49.351 77 38 1 289 365 9 84 3.47e-18 79.7
Msa1019150 MtrunA17_Chr6g0462801 56.061 66 28 1 323 387 1 66 9.67e-17 75.1
Msa1019150 MtrunA17_Chr4g0064651 37.895 95 56 1 403 497 29 120 2.12e-15 73.2
Msa1019150 MtrunA17_Chr5g0442161 31.818 154 96 4 8 156 28 177 4.39e-15 73.9
Msa1019150 MtrunA17_Chr2g0299891 65.909 44 15 0 317 360 2 45 4.27e-14 67.8
Msa1019150 MtrunA17_Chr2g0299941 60.000 55 22 0 405 459 23 77 1.20e-13 67.0
Msa1019150 MtrunA17_Chr7g0221651 40.698 86 49 1 214 299 1 84 3.01e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019150 AT1G16030.1 66.721 616 180 6 1 602 1 605 0.0 829
Msa1019150 AT3G12580.1 66.557 610 179 6 8 603 9 607 0.0 810
Msa1019150 AT5G02500.1 66.230 610 181 6 8 603 9 607 0.0 809
Msa1019150 AT3G09440.1 65.902 610 183 6 8 603 9 607 0.0 799
Msa1019150 AT3G09440.4 65.902 610 183 6 8 603 9 607 0.0 799
Msa1019150 AT3G09440.2 65.902 610 183 6 8 603 9 607 0.0 799
Msa1019150 AT3G09440.3 65.902 610 183 6 8 603 9 607 0.0 799
Msa1019150 AT5G02490.1 65.246 610 187 6 8 603 9 607 0.0 796
Msa1019150 AT1G56410.1 64.803 608 191 7 8 603 9 605 0.0 782
Msa1019150 AT5G42020.1 55.754 617 242 8 2 602 31 632 0.0 672
Msa1019150 AT5G42020.3 55.754 617 242 8 2 602 36 637 0.0 671
Msa1019150 AT5G28540.1 55.592 617 243 8 2 602 31 632 0.0 669
Msa1019150 AT1G09080.1 56.486 609 235 7 9 602 53 646 0.0 657
Msa1019150 AT1G09080.2 56.486 609 235 7 9 602 43 636 0.0 657
Msa1019150 AT5G42020.2 51.907 603 232 11 2 602 31 577 0.0 584
Msa1019150 AT5G02500.2 70.051 394 110 4 8 401 9 394 0.0 566
Msa1019150 AT5G02500.2 50.000 92 32 1 526 603 386 477 1.30e-16 83.6
Msa1019150 AT5G09590.1 46.102 590 275 15 9 583 60 621 6.79e-159 471
Msa1019150 AT4G37910.1 46.946 573 266 13 9 569 55 601 5.84e-152 454
Msa1019150 AT4G37910.2 46.946 573 266 13 9 569 55 601 5.84e-152 454
Msa1019150 AT4G24280.1 43.415 615 304 17 7 608 79 662 2.12e-146 441
Msa1019150 AT5G49910.1 42.834 614 309 14 7 608 79 662 4.69e-146 439
Msa1019150 AT1G79930.2 34.529 446 268 6 9 441 4 438 2.17e-79 267
Msa1019150 AT1G79920.1 34.529 446 268 6 9 441 4 438 5.43e-79 265
Msa1019150 AT1G79930.1 34.529 446 268 6 9 441 4 438 5.68e-79 267
Msa1019150 AT1G79920.3 34.529 446 268 6 9 441 4 438 6.75e-79 265
Msa1019150 AT1G79920.2 34.529 446 268 6 9 441 4 438 6.75e-79 265
Msa1019150 AT1G79920.4 34.529 446 268 6 9 441 4 438 6.75e-79 265
Msa1019150 AT1G11660.4 28.528 652 395 15 9 608 4 636 3.58e-78 263
Msa1019150 AT1G11660.3 28.528 652 395 15 9 608 4 636 3.58e-78 263
Msa1019150 AT1G11660.1 28.528 652 395 15 9 608 4 636 3.58e-78 263
Msa1019150 AT2G32120.1 31.311 511 312 12 8 506 30 513 6.78e-69 234
Msa1019150 AT2G32120.2 31.311 511 312 12 8 506 30 513 6.78e-69 234
Msa1019150 AT1G11660.2 28.201 617 372 15 44 608 2 599 5.46e-68 235
Msa1019150 AT4G16660.2 26.151 478 317 10 5 459 47 511 8.60e-47 177
Msa1019150 AT4G16660.1 26.205 477 316 10 6 459 24 487 1.28e-46 176

Find 118 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATTGCTGAAACATATT+TGG 0.113940 7_1:+40322287 Msa1019150:CDS
CATGGTGTTGTCTAAGTTAA+AGG 0.173778 7_1:+40322266 Msa1019150:CDS
TCAAAACAAACATTGATATT+TGG 0.181030 7_1:-40323356 None:intergenic
TTCAATAGTTGTTGAATCTT+TGG 0.191487 7_1:-40322951 None:intergenic
ACTGCAGCTGCTATTGCTTA+TGG 0.208608 7_1:+40322438 Msa1019150:CDS
TGGTTTGGAACAACCTTAAA+AGG 0.212043 7_1:-40322171 None:intergenic
TTGATATTTGGAACCTTTCT+TGG 0.239641 7_1:-40323344 None:intergenic
TGTTGATGTTAATGGAATTT+TGG 0.249963 7_1:+40323379 Msa1019150:CDS
GTTTCAACACCAAGACTAAA+AGG 0.273894 7_1:-40323125 None:intergenic
TACTATGATCCCTACGAAAA+AGG 0.295550 7_1:+40323184 Msa1019150:CDS
CAATCACGGGTTTGTCTTTG+TGG 0.307374 7_1:-40322191 None:intergenic
CAGTGAGAATTCCAAAGCTT+TGG 0.318063 7_1:+40322680 Msa1019150:CDS
ATCATTCTTCTCATCTCTTC+AGG 0.329446 7_1:-40323476 None:intergenic
AATGTTCTTGTCTTTGATCT+TGG 0.331932 7_1:+40322495 Msa1019150:CDS
AGTGAGAATTCCAAAGCTTT+GGG 0.334628 7_1:+40322681 Msa1019150:CDS
TTCAACAAGACATAAGGTTT+TGG 0.340100 7_1:+40322148 Msa1019150:CDS
ACACGGTTCCCTTGGTCGTT+TGG 0.354947 7_1:-40321988 None:intergenic
ACTTTGGGAGATACTCATTT+GGG 0.360641 7_1:+40322579 Msa1019150:CDS
TTCAAGGTTAAGGCCACTTT+GGG 0.364020 7_1:+40322564 Msa1019150:CDS
GAGGGATGCCGAGCGGTATA+AGG 0.373164 7_1:+40323499 Msa1019150:CDS
GAAATTGCTGAAACATATTT+GGG 0.374370 7_1:+40322288 Msa1019150:CDS
ACGGGTTTGTCTTTGTGGTT+TGG 0.375126 7_1:-40322186 None:intergenic
AGCTGCTATTGCTTATGGTT+TGG 0.376546 7_1:+40322443 Msa1019150:CDS
CACTTTGGGAGATACTCATT+TGG 0.379211 7_1:+40322578 Msa1019150:CDS
GTTCATGAGTTTGTTCTTGT+AGG 0.379423 7_1:+40322912 Msa1019150:CDS
AAAGATGCAGGGAAAATTGC+TGG 0.381725 7_1:+40322384 Msa1019150:CDS
ACTCATCAATTTCTGCCAAT+TGG 0.383486 7_1:-40323652 None:intergenic
CGAAGGAATGTTCAAGGTTA+AGG 0.387070 7_1:+40322554 Msa1019150:CDS
ACCGACACTGAAAGATTAAT+AGG 0.390230 7_1:+40322033 Msa1019150:CDS
TCTTAACCTCCCCAAAGCTT+TGG 0.400779 7_1:-40322691 None:intergenic
AAAGATTCAACAACTATTGA+AGG 0.402328 7_1:+40322953 Msa1019150:CDS
CTTGTCTTTGATCTTGGTGG+TGG 0.402810 7_1:+40322501 Msa1019150:CDS
TTTGATGCCAAACGTTTGAT+TGG 0.402974 7_1:+40322102 Msa1019150:CDS
GTTCTTGTCTTTGATCTTGG+TGG 0.414303 7_1:+40322498 Msa1019150:CDS
TTATGTCTTGTTGAACTGAT+TGG 0.416899 7_1:-40322140 None:intergenic
AGAATTATGTTTATGAAATG+AGG 0.432257 7_1:+40323570 Msa1019150:CDS
CCATATGCTACAGCTTCATC+TGG 0.435300 7_1:-40323026 None:intergenic
CATGAGTTTGTTCTTGTAGG+AGG 0.437477 7_1:+40322915 Msa1019150:CDS
CAGCATGCGAGAAAGCAAAA+AGG 0.438810 7_1:+40322715 Msa1019150:CDS
GTTCAAGGTTAAGGCCACTT+TGG 0.441611 7_1:+40322563 Msa1019150:CDS
GGATGAGGAGGTTAAGAAGA+AGG 0.443092 7_1:+40323526 Msa1019150:CDS
AATCAGTTCAACAAGACATA+AGG 0.446501 7_1:+40322142 Msa1019150:CDS
TCGGTGAAGGCAACGTAAGA+AGG 0.448873 7_1:-40322015 None:intergenic
AAATTTGAGCTCTCAGCAGC+AGG 0.450657 7_1:+40323305 Msa1019150:CDS
AATTGAAGATTTGTTGCTGT+TGG 0.455392 7_1:+40323094 Msa1019150:CDS
GTAGGGATCATAGTATTCTT+CGG 0.456815 7_1:-40323176 None:intergenic
CCAGATGAAGCTGTAGCATA+TGG 0.458386 7_1:+40323026 Msa1019150:CDS
AGTCTTGGTGTTGAAACTAA+AGG 0.463181 7_1:+40323131 Msa1019150:CDS
CTCTTTAGTAGTACCAAGAA+AGG 0.463823 7_1:+40323331 Msa1019150:CDS
GAAGAAGCTTGAGAAGGTAA+TGG 0.467852 7_1:+40323601 Msa1019150:CDS
ATGGCTTGAAAGAAACCAAT+TGG 0.474641 7_1:+40323637 Msa1019150:CDS
GCGACGACCAATCAAACGTT+TGG 0.486511 7_1:-40322109 None:intergenic
TGTACCAAGGTCAATGCCTA+TGG 0.487459 7_1:-40321917 None:intergenic
ATGAGTTTGTTCTTGTAGGA+GGG 0.488901 7_1:+40322916 Msa1019150:CDS
TGAGTTTGAATTCAAGAAGC+AGG 0.491801 7_1:+40323670 Msa1019150:CDS
CAAGAACAAACTCATGAACT+TGG 0.496491 7_1:-40322908 None:intergenic
TGAATTCAAGAAGCAGGAGT+TGG 0.497584 7_1:+40323676 Msa1019150:CDS
TCCTTCGTCAACGGTCACTA+AGG 0.501097 7_1:-40322538 None:intergenic
GAATTATGTTTATGAAATGA+GGG 0.504803 7_1:+40323571 Msa1019150:CDS
GCGGTATAAGGTAGAGGATG+AGG 0.507459 7_1:+40323511 Msa1019150:CDS
AAGGGGTGACACGGTTCCCT+TGG 0.517703 7_1:-40321996 None:intergenic
ACCTATTAATCTTTCAGTGT+CGG 0.522436 7_1:-40322034 None:intergenic
AGACAAGCTACAAAAGATGC+AGG 0.525606 7_1:+40322372 Msa1019150:CDS
TGTGAGTTGTTGAAGTAAGC+AGG 0.526143 7_1:-40322348 None:intergenic
ATTGAGCTTGATTCACTATG+TGG 0.530275 7_1:+40322765 Msa1019150:CDS
CGTTGACGAAGGAATGTTCA+AGG 0.532858 7_1:+40322548 Msa1019150:CDS
ATCACTATCACCAACATTGA+GGG 0.534042 7_1:+40323443 Msa1019150:CDS
AGCTTGATTCACTATGTGGA+GGG 0.534646 7_1:+40322769 Msa1019150:CDS
CAATATTGCTGCTTGAACTG+CGG 0.535770 7_1:-40323051 None:intergenic
TGCCGAGCGGTATAAGGTAG+AGG 0.536561 7_1:+40323505 Msa1019150:CDS
CGGTGAAGGCAACGTAAGAA+GGG 0.538770 7_1:-40322014 None:intergenic
ATCCTCTACCTTATACCGCT+CGG 0.541357 7_1:-40323507 None:intergenic
TTGTAATTGACAGCAATCAC+GGG 0.544513 7_1:-40322204 None:intergenic
ACCTCAAGAGATATCTTCCA+TGG 0.553297 7_1:+40322248 Msa1019150:CDS
TTTGTAATTGACAGCAATCA+CGG 0.553769 7_1:-40322205 None:intergenic
GAAGCTTGAGAAGGTAATGG+AGG 0.563030 7_1:+40323604 Msa1019150:CDS
CTTGAACATTCCTTCGTCAA+CGG 0.564856 7_1:-40322547 None:intergenic
AGAGATGAGAAGAATGATGA+GGG 0.564938 7_1:+40323481 Msa1019150:CDS
TAATGGAGGAAAGTATAGAA+TGG 0.565405 7_1:+40323618 Msa1019150:CDS
TAATCTTTCAGTGTCGGTGA+AGG 0.565703 7_1:-40322028 None:intergenic
AAGGAAATGTTTAGAGTCAA+CGG 0.569774 7_1:+40322972 Msa1019150:CDS
GCAGCAATATTGAATACTGA+AGG 0.571285 7_1:+40323062 Msa1019150:CDS
TTGGGAGATACTCATTTGGG+TGG 0.571754 7_1:+40322582 Msa1019150:CDS
GACAAGAAAATGTGGAGAGA+AGG 0.578701 7_1:+40322465 Msa1019150:CDS
GATCACTATCACCAACATTG+AGG 0.578963 7_1:+40323442 Msa1019150:CDS
GAGAGTGAAGAAGCTTGAGA+AGG 0.581572 7_1:+40323595 Msa1019150:CDS
TATGAAATAATTCAACAAGA+CGG 0.584129 7_1:-40322632 None:intergenic
ACTAAGCCTTCCCTCAATGT+TGG 0.585019 7_1:-40323453 None:intergenic
GTATCGATCAAAGTGTATGA+AGG 0.587666 7_1:+40323245 Msa1019150:CDS
TACACTATCTTGATTATCAG+AGG 0.588367 7_1:-40323225 None:intergenic
TGCAGCTGTAACTTGTACCA+AGG 0.593726 7_1:-40321930 None:intergenic
GAGCTTGATTCACTATGTGG+AGG 0.595124 7_1:+40322768 Msa1019150:CDS
GTATAAGGTAGAGGATGAGG+AGG 0.602447 7_1:+40323514 Msa1019150:CDS
AGAATTCCAAAGCTTTGGGG+AGG 0.611200 7_1:+40322685 Msa1019150:CDS
TAAGCAATAGCAGCTGCAGT+AGG 0.618882 7_1:-40322435 None:intergenic
GTGATTGCTGTCAATTACAA+AGG 0.623404 7_1:+40322207 Msa1019150:CDS
GTGAGAATTCCAAAGCTTTG+GGG 0.624343 7_1:+40322682 Msa1019150:CDS
AAGAGATGAGAAGAATGATG+AGG 0.628540 7_1:+40323480 Msa1019150:CDS
CAACGTAAGAAGGGGTGACA+CGG 0.629570 7_1:-40322005 None:intergenic
AAATCCATAGGCATTGACCT+TGG 0.630161 7_1:+40321913 Msa1019150:CDS
AGATCATTCCAAACGACCAA+GGG 0.630317 7_1:+40321980 Msa1019150:CDS
GAGATCATTCCAAACGACCA+AGG 0.630381 7_1:+40321979 Msa1019150:CDS
ATGGTTTGGACAAGAAAATG+TGG 0.630603 7_1:+40322457 Msa1019150:CDS
TCCTTAGTGACCGTTGACGA+AGG 0.634054 7_1:+40322537 Msa1019150:CDS
AATTTGAGCTCTCAGCAGCA+GGG 0.636454 7_1:+40323306 Msa1019150:CDS
CAAATGAGTATCTCCCAAAG+TGG 0.637746 7_1:-40322577 None:intergenic
ACCATGGAAGATATCTCTTG+AGG 0.641800 7_1:-40322249 None:intergenic
GACAAGCTACAAAAGATGCA+GGG 0.645331 7_1:+40322373 Msa1019150:CDS
CTATCACCAACATTGAGGGA+AGG 0.646725 7_1:+40323447 Msa1019150:CDS
AGGAGAACATGCTAAGACCG+AGG 0.663006 7_1:+40323265 Msa1019150:CDS
GGTGAAGGCAACGTAAGAAG+GGG 0.669245 7_1:-40322013 None:intergenic
ATTGCAGTGTGGCGAAACAA+TGG 0.672404 7_1:+40321952 Msa1019150:CDS
CTTTAACTTAGACAACACCA+TGG 0.681981 7_1:-40322265 None:intergenic
CTGCTGAAGATGAGACACAA+GGG 0.687282 7_1:+40323408 Msa1019150:CDS
GTTACAGCTGCATTGCAGTG+TGG 0.706882 7_1:+40321941 Msa1019150:CDS
CTTGGTGTTGAAACTAAAGG+TGG 0.707841 7_1:+40323134 Msa1019150:CDS
GAATGATGAGGGATGCCGAG+CGG 0.719182 7_1:+40323492 Msa1019150:CDS
ACTGCTGAAGATGAGACACA+AGG 0.722680 7_1:+40323407 Msa1019150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTGATTTTGATAACAATT+TGG + chr7_1:40322605-40322624 Msa1019150:CDS 20.0%
!! TATGAAATAATTCAACAAGA+CGG - chr7_1:40322635-40322654 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG + chr7_1:40322821-40322840 Msa1019150:CDS 20.0%
!! TCAAAACAAACATTGATATT+TGG - chr7_1:40323359-40323378 None:intergenic 20.0%
!! AGAATTATGTTTATGAAATG+AGG + chr7_1:40323570-40323589 Msa1019150:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG + chr7_1:40323571-40323590 Msa1019150:CDS 20.0%
!!! TGTTGATTTTGATAACAATT+TGG + chr7_1:40322605-40322624 Msa1019150:CDS 20.0%
!! TATGAAATAATTCAACAAGA+CGG - chr7_1:40322635-40322654 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG + chr7_1:40322821-40322840 Msa1019150:CDS 20.0%
!! TCAAAACAAACATTGATATT+TGG - chr7_1:40323359-40323378 None:intergenic 20.0%
!! AGAATTATGTTTATGAAATG+AGG + chr7_1:40323570-40323589 Msa1019150:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG + chr7_1:40323571-40323590 Msa1019150:CDS 20.0%
!!! ATTTTTGGCTAATTGGTTTA+TGG - chr7_1:40322067-40322086 None:intergenic 25.0%
! GAAATTGCTGAAACATATTT+GGG + chr7_1:40322288-40322307 Msa1019150:CDS 25.0%
! TTCAATAGTTGTTGAATCTT+TGG - chr7_1:40322954-40322973 None:intergenic 25.0%
! AAAGATTCAACAACTATTGA+AGG + chr7_1:40322953-40322972 Msa1019150:CDS 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG + chr7_1:40323371-40323390 Msa1019150:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG + chr7_1:40323379-40323398 Msa1019150:CDS 25.0%
!!! ATTTTTGGCTAATTGGTTTA+TGG - chr7_1:40322067-40322086 None:intergenic 25.0%
! GAAATTGCTGAAACATATTT+GGG + chr7_1:40322288-40322307 Msa1019150:CDS 25.0%
! TTCAATAGTTGTTGAATCTT+TGG - chr7_1:40322954-40322973 None:intergenic 25.0%
! AAAGATTCAACAACTATTGA+AGG + chr7_1:40322953-40322972 Msa1019150:CDS 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG + chr7_1:40323371-40323390 Msa1019150:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG + chr7_1:40323379-40323398 Msa1019150:CDS 25.0%
ACAAGAAAAAGCAAATCCAT+AGG + chr7_1:40321901-40321920 Msa1019150:CDS 30.0%
ACCTATTAATCTTTCAGTGT+CGG - chr7_1:40322037-40322056 None:intergenic 30.0%
! TTATGTCTTGTTGAACTGAT+TGG - chr7_1:40322143-40322162 None:intergenic 30.0%
AATCAGTTCAACAAGACATA+AGG + chr7_1:40322142-40322161 Msa1019150:CDS 30.0%
! TTCAACAAGACATAAGGTTT+TGG + chr7_1:40322148-40322167 Msa1019150:CDS 30.0%
TTTGTAATTGACAGCAATCA+CGG - chr7_1:40322208-40322227 None:intergenic 30.0%
! GAGGTGAAAAATGTTTTTCT+TGG - chr7_1:40322233-40322252 None:intergenic 30.0%
GGAAATTGCTGAAACATATT+TGG + chr7_1:40322287-40322306 Msa1019150:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG + chr7_1:40322495-40322514 Msa1019150:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG + chr7_1:40322809-40322828 Msa1019150:CDS 30.0%
! GGATTTGTTCAAAAAATGCA+TGG + chr7_1:40322842-40322861 Msa1019150:CDS 30.0%
! AAGGAAATGTTTAGAGTCAA+CGG + chr7_1:40322972-40322991 Msa1019150:CDS 30.0%
!! AATTGAAGATTTGTTGCTGT+TGG + chr7_1:40323094-40323113 Msa1019150:CDS 30.0%
!! ATACATTCTCCTTTTTCGTA+GGG - chr7_1:40323196-40323215 None:intergenic 30.0%
!! AATACATTCTCCTTTTTCGT+AGG - chr7_1:40323197-40323216 None:intergenic 30.0%
TACACTATCTTGATTATCAG+AGG - chr7_1:40323228-40323247 None:intergenic 30.0%
! TTGATATTTGGAACCTTTCT+TGG - chr7_1:40323347-40323366 None:intergenic 30.0%
! TAATGGAGGAAAGTATAGAA+TGG + chr7_1:40323618-40323637 Msa1019150:CDS 30.0%
ACAAGAAAAAGCAAATCCAT+AGG + chr7_1:40321901-40321920 Msa1019150:CDS 30.0%
ACCTATTAATCTTTCAGTGT+CGG - chr7_1:40322037-40322056 None:intergenic 30.0%
! TTATGTCTTGTTGAACTGAT+TGG - chr7_1:40322143-40322162 None:intergenic 30.0%
AATCAGTTCAACAAGACATA+AGG + chr7_1:40322142-40322161 Msa1019150:CDS 30.0%
! TTCAACAAGACATAAGGTTT+TGG + chr7_1:40322148-40322167 Msa1019150:CDS 30.0%
TTTGTAATTGACAGCAATCA+CGG - chr7_1:40322208-40322227 None:intergenic 30.0%
! GAGGTGAAAAATGTTTTTCT+TGG - chr7_1:40322233-40322252 None:intergenic 30.0%
GGAAATTGCTGAAACATATT+TGG + chr7_1:40322287-40322306 Msa1019150:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG + chr7_1:40322495-40322514 Msa1019150:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG + chr7_1:40322809-40322828 Msa1019150:CDS 30.0%
! GGATTTGTTCAAAAAATGCA+TGG + chr7_1:40322842-40322861 Msa1019150:CDS 30.0%
! AAGGAAATGTTTAGAGTCAA+CGG + chr7_1:40322972-40322991 Msa1019150:CDS 30.0%
!! AATTGAAGATTTGTTGCTGT+TGG + chr7_1:40323094-40323113 Msa1019150:CDS 30.0%
!! ATACATTCTCCTTTTTCGTA+GGG - chr7_1:40323196-40323215 None:intergenic 30.0%
!! AATACATTCTCCTTTTTCGT+AGG - chr7_1:40323197-40323216 None:intergenic 30.0%
TACACTATCTTGATTATCAG+AGG - chr7_1:40323228-40323247 None:intergenic 30.0%
! TTGATATTTGGAACCTTTCT+TGG - chr7_1:40323347-40323366 None:intergenic 30.0%
! TAATGGAGGAAAGTATAGAA+TGG + chr7_1:40323618-40323637 Msa1019150:CDS 30.0%
ACCGACACTGAAAGATTAAT+AGG + chr7_1:40322033-40322052 Msa1019150:CDS 35.0%
!!! TGTGTGGATTTTTGGCTAAT+TGG - chr7_1:40322074-40322093 None:intergenic 35.0%
!!! AATGGTGTTGTGTGGATTTT+TGG - chr7_1:40322082-40322101 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+TGG - chr7_1:40322100-40322119 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG + chr7_1:40322102-40322121 Msa1019150:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG + chr7_1:40322158-40322177 Msa1019150:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG - chr7_1:40322174-40322193 None:intergenic 35.0%
TTGTAATTGACAGCAATCAC+GGG - chr7_1:40322207-40322226 None:intergenic 35.0%
GTGATTGCTGTCAATTACAA+AGG + chr7_1:40322207-40322226 Msa1019150:CDS 35.0%
! CTTTAACTTAGACAACACCA+TGG - chr7_1:40322268-40322287 None:intergenic 35.0%
!! CATGGTGTTGTCTAAGTTAA+AGG + chr7_1:40322266-40322285 Msa1019150:CDS 35.0%
!!! TTGCTGGTTTTAATGTGATG+AGG + chr7_1:40322400-40322419 Msa1019150:CDS 35.0%
! ATGGTTTGGACAAGAAAATG+TGG + chr7_1:40322457-40322476 Msa1019150:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG + chr7_1:40322579-40322598 Msa1019150:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG + chr7_1:40322681-40322700 Msa1019150:CDS 35.0%
ATTGAGCTTGATTCACTATG+TGG + chr7_1:40322765-40322784 Msa1019150:CDS 35.0%
CAAAAAATGCATGGAAACTG+TGG + chr7_1:40322851-40322870 Msa1019150:CDS 35.0%
GGAAACTGTGGAAAAATGTT+TGG + chr7_1:40322863-40322882 Msa1019150:CDS 35.0%
TGTGGAAAAATGTTTGGTTG+AGG + chr7_1:40322869-40322888 Msa1019150:CDS 35.0%
CAAGAACAAACTCATGAACT+TGG - chr7_1:40322911-40322930 None:intergenic 35.0%
! GTTCATGAGTTTGTTCTTGT+AGG + chr7_1:40322912-40322931 Msa1019150:CDS 35.0%
! ATGAGTTTGTTCTTGTAGGA+GGG + chr7_1:40322916-40322935 Msa1019150:CDS 35.0%
! TCTGGATTAATGCTTTTGCA+AGG - chr7_1:40323011-40323030 None:intergenic 35.0%
GCAGCAATATTGAATACTGA+AGG + chr7_1:40323062-40323081 Msa1019150:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG + chr7_1:40323116-40323135 Msa1019150:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG - chr7_1:40323128-40323147 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG + chr7_1:40323131-40323150 Msa1019150:CDS 35.0%
GTAGGGATCATAGTATTCTT+CGG - chr7_1:40323179-40323198 None:intergenic 35.0%
TACTATGATCCCTACGAAAA+AGG + chr7_1:40323184-40323203 Msa1019150:CDS 35.0%
! GTATCGATCAAAGTGTATGA+AGG + chr7_1:40323245-40323264 Msa1019150:CDS 35.0%
CTCTTTAGTAGTACCAAGAA+AGG + chr7_1:40323331-40323350 Msa1019150:CDS 35.0%
ATCACTATCACCAACATTGA+GGG + chr7_1:40323443-40323462 Msa1019150:CDS 35.0%
ATCATTCTTCTCATCTCTTC+AGG - chr7_1:40323479-40323498 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG + chr7_1:40323480-40323499 Msa1019150:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG + chr7_1:40323481-40323500 Msa1019150:CDS 35.0%
ATGGCTTGAAAGAAACCAAT+TGG + chr7_1:40323637-40323656 Msa1019150:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG - chr7_1:40323655-40323674 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG + chr7_1:40323670-40323689 Msa1019150:CDS 35.0%
ACCGACACTGAAAGATTAAT+AGG + chr7_1:40322033-40322052 Msa1019150:CDS 35.0%
!!! TGTGTGGATTTTTGGCTAAT+TGG - chr7_1:40322074-40322093 None:intergenic 35.0%
!!! AATGGTGTTGTGTGGATTTT+TGG - chr7_1:40322082-40322101 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+TGG - chr7_1:40322100-40322119 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG + chr7_1:40322102-40322121 Msa1019150:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG + chr7_1:40322158-40322177 Msa1019150:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG - chr7_1:40322174-40322193 None:intergenic 35.0%
TTGTAATTGACAGCAATCAC+GGG - chr7_1:40322207-40322226 None:intergenic 35.0%
GTGATTGCTGTCAATTACAA+AGG + chr7_1:40322207-40322226 Msa1019150:CDS 35.0%
! CTTTAACTTAGACAACACCA+TGG - chr7_1:40322268-40322287 None:intergenic 35.0%
!! CATGGTGTTGTCTAAGTTAA+AGG + chr7_1:40322266-40322285 Msa1019150:CDS 35.0%
!!! TTGCTGGTTTTAATGTGATG+AGG + chr7_1:40322400-40322419 Msa1019150:CDS 35.0%
! ATGGTTTGGACAAGAAAATG+TGG + chr7_1:40322457-40322476 Msa1019150:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG + chr7_1:40322579-40322598 Msa1019150:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG + chr7_1:40322681-40322700 Msa1019150:CDS 35.0%
ATTGAGCTTGATTCACTATG+TGG + chr7_1:40322765-40322784 Msa1019150:CDS 35.0%
CAAAAAATGCATGGAAACTG+TGG + chr7_1:40322851-40322870 Msa1019150:CDS 35.0%
GGAAACTGTGGAAAAATGTT+TGG + chr7_1:40322863-40322882 Msa1019150:CDS 35.0%
TGTGGAAAAATGTTTGGTTG+AGG + chr7_1:40322869-40322888 Msa1019150:CDS 35.0%
CAAGAACAAACTCATGAACT+TGG - chr7_1:40322911-40322930 None:intergenic 35.0%
! GTTCATGAGTTTGTTCTTGT+AGG + chr7_1:40322912-40322931 Msa1019150:CDS 35.0%
! ATGAGTTTGTTCTTGTAGGA+GGG + chr7_1:40322916-40322935 Msa1019150:CDS 35.0%
! TCTGGATTAATGCTTTTGCA+AGG - chr7_1:40323011-40323030 None:intergenic 35.0%
GCAGCAATATTGAATACTGA+AGG + chr7_1:40323062-40323081 Msa1019150:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG + chr7_1:40323116-40323135 Msa1019150:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG - chr7_1:40323128-40323147 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG + chr7_1:40323131-40323150 Msa1019150:CDS 35.0%
GTAGGGATCATAGTATTCTT+CGG - chr7_1:40323179-40323198 None:intergenic 35.0%
TACTATGATCCCTACGAAAA+AGG + chr7_1:40323184-40323203 Msa1019150:CDS 35.0%
! GTATCGATCAAAGTGTATGA+AGG + chr7_1:40323245-40323264 Msa1019150:CDS 35.0%
CTCTTTAGTAGTACCAAGAA+AGG + chr7_1:40323331-40323350 Msa1019150:CDS 35.0%
ATCACTATCACCAACATTGA+GGG + chr7_1:40323443-40323462 Msa1019150:CDS 35.0%
ATCATTCTTCTCATCTCTTC+AGG - chr7_1:40323479-40323498 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG + chr7_1:40323480-40323499 Msa1019150:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG + chr7_1:40323481-40323500 Msa1019150:CDS 35.0%
ATGGCTTGAAAGAAACCAAT+TGG + chr7_1:40323637-40323656 Msa1019150:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG - chr7_1:40323655-40323674 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG + chr7_1:40323670-40323689 Msa1019150:CDS 35.0%
!! AAATCCATAGGCATTGACCT+TGG + chr7_1:40321913-40321932 Msa1019150:CDS 40.0%
AGATCATTCCAAACGACCAA+GGG + chr7_1:40321980-40321999 Msa1019150:CDS 40.0%
!! TAATCTTTCAGTGTCGGTGA+AGG - chr7_1:40322031-40322050 None:intergenic 40.0%
!! GCATCAAAAATGGTGTTGTG+TGG - chr7_1:40322090-40322109 None:intergenic 40.0%
ACCTCAAGAGATATCTTCCA+TGG + chr7_1:40322248-40322267 Msa1019150:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG - chr7_1:40322252-40322271 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG - chr7_1:40322351-40322370 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG + chr7_1:40322372-40322391 Msa1019150:CDS 40.0%
GACAAGCTACAAAAGATGCA+GGG + chr7_1:40322373-40322392 Msa1019150:CDS 40.0%
AAAGATGCAGGGAAAATTGC+TGG + chr7_1:40322384-40322403 Msa1019150:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG + chr7_1:40322443-40322462 Msa1019150:CDS 40.0%
GACAAGAAAATGTGGAGAGA+AGG + chr7_1:40322465-40322484 Msa1019150:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG + chr7_1:40322498-40322517 Msa1019150:CDS 40.0%
CTTGAACATTCCTTCGTCAA+CGG - chr7_1:40322550-40322569 None:intergenic 40.0%
CGAAGGAATGTTCAAGGTTA+AGG + chr7_1:40322554-40322573 Msa1019150:CDS 40.0%
! TTCAAGGTTAAGGCCACTTT+GGG + chr7_1:40322564-40322583 Msa1019150:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG - chr7_1:40322580-40322599 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG + chr7_1:40322578-40322597 Msa1019150:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG + chr7_1:40322680-40322699 Msa1019150:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG + chr7_1:40322682-40322701 Msa1019150:CDS 40.0%
AGCTTGATTCACTATGTGGA+GGG + chr7_1:40322769-40322788 Msa1019150:CDS 40.0%
! CATGAGTTTGTTCTTGTAGG+AGG + chr7_1:40322915-40322934 Msa1019150:CDS 40.0%
! CAATATTGCTGCTTGAACTG+CGG - chr7_1:40323054-40323073 None:intergenic 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG + chr7_1:40323134-40323153 Msa1019150:CDS 40.0%
GATCACTATCACCAACATTG+AGG + chr7_1:40323442-40323461 Msa1019150:CDS 40.0%
GAAGAAGCTTGAGAAGGTAA+TGG + chr7_1:40323601-40323620 Msa1019150:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG + chr7_1:40323676-40323695 Msa1019150:CDS 40.0%
!! AAATCCATAGGCATTGACCT+TGG + chr7_1:40321913-40321932 Msa1019150:CDS 40.0%
AGATCATTCCAAACGACCAA+GGG + chr7_1:40321980-40321999 Msa1019150:CDS 40.0%
!! TAATCTTTCAGTGTCGGTGA+AGG - chr7_1:40322031-40322050 None:intergenic 40.0%
!! GCATCAAAAATGGTGTTGTG+TGG - chr7_1:40322090-40322109 None:intergenic 40.0%
ACCTCAAGAGATATCTTCCA+TGG + chr7_1:40322248-40322267 Msa1019150:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG - chr7_1:40322252-40322271 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG - chr7_1:40322351-40322370 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG + chr7_1:40322372-40322391 Msa1019150:CDS 40.0%
GACAAGCTACAAAAGATGCA+GGG + chr7_1:40322373-40322392 Msa1019150:CDS 40.0%
AAAGATGCAGGGAAAATTGC+TGG + chr7_1:40322384-40322403 Msa1019150:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG + chr7_1:40322443-40322462 Msa1019150:CDS 40.0%
GACAAGAAAATGTGGAGAGA+AGG + chr7_1:40322465-40322484 Msa1019150:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG + chr7_1:40322498-40322517 Msa1019150:CDS 40.0%
CTTGAACATTCCTTCGTCAA+CGG - chr7_1:40322550-40322569 None:intergenic 40.0%
CGAAGGAATGTTCAAGGTTA+AGG + chr7_1:40322554-40322573 Msa1019150:CDS 40.0%
! TTCAAGGTTAAGGCCACTTT+GGG + chr7_1:40322564-40322583 Msa1019150:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG - chr7_1:40322580-40322599 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG + chr7_1:40322578-40322597 Msa1019150:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG + chr7_1:40322680-40322699 Msa1019150:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG + chr7_1:40322682-40322701 Msa1019150:CDS 40.0%
AGCTTGATTCACTATGTGGA+GGG + chr7_1:40322769-40322788 Msa1019150:CDS 40.0%
! CATGAGTTTGTTCTTGTAGG+AGG + chr7_1:40322915-40322934 Msa1019150:CDS 40.0%
! CAATATTGCTGCTTGAACTG+CGG - chr7_1:40323054-40323073 None:intergenic 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG + chr7_1:40323134-40323153 Msa1019150:CDS 40.0%
GATCACTATCACCAACATTG+AGG + chr7_1:40323442-40323461 Msa1019150:CDS 40.0%
GAAGAAGCTTGAGAAGGTAA+TGG + chr7_1:40323601-40323620 Msa1019150:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG + chr7_1:40323676-40323695 Msa1019150:CDS 40.0%
TGTACCAAGGTCAATGCCTA+TGG - chr7_1:40321920-40321939 None:intergenic 45.0%
! TGCAGCTGTAACTTGTACCA+AGG - chr7_1:40321933-40321952 None:intergenic 45.0%
ATTGCAGTGTGGCGAAACAA+TGG + chr7_1:40321952-40321971 Msa1019150:CDS 45.0%
GAGATCATTCCAAACGACCA+AGG + chr7_1:40321979-40321998 Msa1019150:CDS 45.0%
ACGGGTTTGTCTTTGTGGTT+TGG - chr7_1:40322189-40322208 None:intergenic 45.0%
CAATCACGGGTTTGTCTTTG+TGG - chr7_1:40322194-40322213 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG - chr7_1:40322438-40322457 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG + chr7_1:40322438-40322457 Msa1019150:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG + chr7_1:40322501-40322520 Msa1019150:CDS 45.0%
CGTTGACGAAGGAATGTTCA+AGG + chr7_1:40322548-40322567 Msa1019150:CDS 45.0%
GTTCAAGGTTAAGGCCACTT+TGG + chr7_1:40322563-40322582 Msa1019150:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG + chr7_1:40322582-40322601 Msa1019150:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG + chr7_1:40322685-40322704 Msa1019150:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG - chr7_1:40322694-40322713 None:intergenic 45.0%
CAGCATGCGAGAAAGCAAAA+AGG + chr7_1:40322715-40322734 Msa1019150:CDS 45.0%
GAGCTTGATTCACTATGTGG+AGG + chr7_1:40322768-40322787 Msa1019150:CDS 45.0%
CCATATGCTACAGCTTCATC+TGG - chr7_1:40323029-40323048 None:intergenic 45.0%
CCAGATGAAGCTGTAGCATA+TGG + chr7_1:40323026-40323045 Msa1019150:CDS 45.0%
! ACCGAGGACAACTTTTTGCT+CGG + chr7_1:40323281-40323300 Msa1019150:CDS 45.0%
ACCGAGCAAAAAGTTGTCCT+CGG - chr7_1:40323285-40323304 None:intergenic 45.0%
AAATTTGAGCTCTCAGCAGC+AGG + chr7_1:40323305-40323324 Msa1019150:CDS 45.0%
AATTTGAGCTCTCAGCAGCA+GGG + chr7_1:40323306-40323325 Msa1019150:CDS 45.0%
ACTGCTGAAGATGAGACACA+AGG + chr7_1:40323407-40323426 Msa1019150:CDS 45.0%
CTGCTGAAGATGAGACACAA+GGG + chr7_1:40323408-40323427 Msa1019150:CDS 45.0%
CTATCACCAACATTGAGGGA+AGG + chr7_1:40323447-40323466 Msa1019150:CDS 45.0%
ACTAAGCCTTCCCTCAATGT+TGG - chr7_1:40323456-40323475 None:intergenic 45.0%
ATCCTCTACCTTATACCGCT+CGG - chr7_1:40323510-40323529 None:intergenic 45.0%
GTATAAGGTAGAGGATGAGG+AGG + chr7_1:40323514-40323533 Msa1019150:CDS 45.0%
GGATGAGGAGGTTAAGAAGA+AGG + chr7_1:40323526-40323545 Msa1019150:CDS 45.0%
GAGAGTGAAGAAGCTTGAGA+AGG + chr7_1:40323595-40323614 Msa1019150:CDS 45.0%
! GAAGCTTGAGAAGGTAATGG+AGG + chr7_1:40323604-40323623 Msa1019150:CDS 45.0%
TGTACCAAGGTCAATGCCTA+TGG - chr7_1:40321920-40321939 None:intergenic 45.0%
! TGCAGCTGTAACTTGTACCA+AGG - chr7_1:40321933-40321952 None:intergenic 45.0%
ATTGCAGTGTGGCGAAACAA+TGG + chr7_1:40321952-40321971 Msa1019150:CDS 45.0%
GAGATCATTCCAAACGACCA+AGG + chr7_1:40321979-40321998 Msa1019150:CDS 45.0%
ACGGGTTTGTCTTTGTGGTT+TGG - chr7_1:40322189-40322208 None:intergenic 45.0%
CAATCACGGGTTTGTCTTTG+TGG - chr7_1:40322194-40322213 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG - chr7_1:40322438-40322457 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG + chr7_1:40322438-40322457 Msa1019150:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG + chr7_1:40322501-40322520 Msa1019150:CDS 45.0%
CGTTGACGAAGGAATGTTCA+AGG + chr7_1:40322548-40322567 Msa1019150:CDS 45.0%
GTTCAAGGTTAAGGCCACTT+TGG + chr7_1:40322563-40322582 Msa1019150:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG + chr7_1:40322582-40322601 Msa1019150:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG + chr7_1:40322685-40322704 Msa1019150:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG - chr7_1:40322694-40322713 None:intergenic 45.0%
CAGCATGCGAGAAAGCAAAA+AGG + chr7_1:40322715-40322734 Msa1019150:CDS 45.0%
GAGCTTGATTCACTATGTGG+AGG + chr7_1:40322768-40322787 Msa1019150:CDS 45.0%
CCATATGCTACAGCTTCATC+TGG - chr7_1:40323029-40323048 None:intergenic 45.0%
CCAGATGAAGCTGTAGCATA+TGG + chr7_1:40323026-40323045 Msa1019150:CDS 45.0%
! ACCGAGGACAACTTTTTGCT+CGG + chr7_1:40323281-40323300 Msa1019150:CDS 45.0%
ACCGAGCAAAAAGTTGTCCT+CGG - chr7_1:40323285-40323304 None:intergenic 45.0%
AAATTTGAGCTCTCAGCAGC+AGG + chr7_1:40323305-40323324 Msa1019150:CDS 45.0%
AATTTGAGCTCTCAGCAGCA+GGG + chr7_1:40323306-40323325 Msa1019150:CDS 45.0%
ACTGCTGAAGATGAGACACA+AGG + chr7_1:40323407-40323426 Msa1019150:CDS 45.0%
CTGCTGAAGATGAGACACAA+GGG + chr7_1:40323408-40323427 Msa1019150:CDS 45.0%
CTATCACCAACATTGAGGGA+AGG + chr7_1:40323447-40323466 Msa1019150:CDS 45.0%
ACTAAGCCTTCCCTCAATGT+TGG - chr7_1:40323456-40323475 None:intergenic 45.0%
ATCCTCTACCTTATACCGCT+CGG - chr7_1:40323510-40323529 None:intergenic 45.0%
GTATAAGGTAGAGGATGAGG+AGG + chr7_1:40323514-40323533 Msa1019150:CDS 45.0%
GGATGAGGAGGTTAAGAAGA+AGG + chr7_1:40323526-40323545 Msa1019150:CDS 45.0%
GAGAGTGAAGAAGCTTGAGA+AGG + chr7_1:40323595-40323614 Msa1019150:CDS 45.0%
! GAAGCTTGAGAAGGTAATGG+AGG + chr7_1:40323604-40323623 Msa1019150:CDS 45.0%
GTTACAGCTGCATTGCAGTG+TGG + chr7_1:40321941-40321960 Msa1019150:CDS 50.0%
CAACGTAAGAAGGGGTGACA+CGG - chr7_1:40322008-40322027 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG - chr7_1:40322016-40322035 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG - chr7_1:40322017-40322036 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG - chr7_1:40322018-40322037 None:intergenic 50.0%
GCGACGACCAATCAAACGTT+TGG - chr7_1:40322112-40322131 None:intergenic 50.0%
TCCTTAGTGACCGTTGACGA+AGG + chr7_1:40322537-40322556 Msa1019150:CDS 50.0%
TCCTTCGTCAACGGTCACTA+AGG - chr7_1:40322541-40322560 None:intergenic 50.0%
AGGAGAACATGCTAAGACCG+AGG + chr7_1:40323265-40323284 Msa1019150:CDS 50.0%
GCGGTATAAGGTAGAGGATG+AGG + chr7_1:40323511-40323530 Msa1019150:CDS 50.0%
GTTACAGCTGCATTGCAGTG+TGG + chr7_1:40321941-40321960 Msa1019150:CDS 50.0%
CAACGTAAGAAGGGGTGACA+CGG - chr7_1:40322008-40322027 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG - chr7_1:40322016-40322035 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG - chr7_1:40322017-40322036 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG - chr7_1:40322018-40322037 None:intergenic 50.0%
GCGACGACCAATCAAACGTT+TGG - chr7_1:40322112-40322131 None:intergenic 50.0%
TCCTTAGTGACCGTTGACGA+AGG + chr7_1:40322537-40322556 Msa1019150:CDS 50.0%
TCCTTCGTCAACGGTCACTA+AGG - chr7_1:40322541-40322560 None:intergenic 50.0%
AGGAGAACATGCTAAGACCG+AGG + chr7_1:40323265-40323284 Msa1019150:CDS 50.0%
GCGGTATAAGGTAGAGGATG+AGG + chr7_1:40323511-40323530 Msa1019150:CDS 50.0%
ACACGGTTCCCTTGGTCGTT+TGG - chr7_1:40321991-40322010 None:intergenic 55.0%
GAATGATGAGGGATGCCGAG+CGG + chr7_1:40323492-40323511 Msa1019150:CDS 55.0%
TGCCGAGCGGTATAAGGTAG+AGG + chr7_1:40323505-40323524 Msa1019150:CDS 55.0%
ACACGGTTCCCTTGGTCGTT+TGG - chr7_1:40321991-40322010 None:intergenic 55.0%
GAATGATGAGGGATGCCGAG+CGG + chr7_1:40323492-40323511 Msa1019150:CDS 55.0%
TGCCGAGCGGTATAAGGTAG+AGG + chr7_1:40323505-40323524 Msa1019150:CDS 55.0%
AAGGGGTGACACGGTTCCCT+TGG - chr7_1:40321999-40322018 None:intergenic 60.0%
GAGGGATGCCGAGCGGTATA+AGG + chr7_1:40323499-40323518 Msa1019150:CDS 60.0%
AAGGGGTGACACGGTTCCCT+TGG - chr7_1:40321999-40322018 None:intergenic 60.0%
GAGGGATGCCGAGCGGTATA+AGG + chr7_1:40323499-40323518 Msa1019150:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 40321895 40323721 40321895 ID=Msa1019150;Name=Msa1019150
chr7_1 mRNA 40321895 40323721 40321895 ID=Msa1019150-mRNA-1;Parent=Msa1019150;Name=Msa1019150-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|608
chr7_1 exon 40321895 40323721 40321895 ID=Msa1019150-mRNA-1:exon:7813;Parent=Msa1019150-mRNA-1
chr7_1 CDS 40321895 40323721 40321895 ID=Msa1019150-mRNA-1:cds;Parent=Msa1019150-mRNA-1
Gene Sequence

>Msa1019150

ATGGCAACAAGAAAAAGCAAATCCATAGGCATTGACCTTGGTACAAGTTACAGCTGCATTGCAGTGTGGCGAAACAATGGTGTTGAGATCATTCCAAACGACCAAGGGAACCGTGTCACCCCTTCTTACGTTGCCTTCACCGACACTGAAAGATTAATAGGTGATGCTGCCATAAACCAATTAGCCAAAAATCCACACAACACCATTTTTGATGCCAAACGTTTGATTGGTCGTCGCTTCTCTGACCAATCAGTTCAACAAGACATAAGGTTTTGGCCTTTTAAGGTTGTTCCAAACCACAAAGACAAACCCGTGATTGCTGTCAATTACAAAGGCCAAGAAAAACATTTTTCACCTCAAGAGATATCTTCCATGGTGTTGTCTAAGTTAAAGGAAATTGCTGAAACATATTTGGGTCATGATCATGAAGTGAACAATGCTGTTATCACTGTTCCTGCTTACTTCAACAACTCACAGAGACAAGCTACAAAAGATGCAGGGAAAATTGCTGGTTTTAATGTGATGAGGATCATCAACGAGCCTACTGCAGCTGCTATTGCTTATGGTTTGGACAAGAAAATGTGGAGAGAAGGCGAGAAGAATGTTCTTGTCTTTGATCTTGGTGGTGGAACTTTTGATGTTTCCTTAGTGACCGTTGACGAAGGAATGTTCAAGGTTAAGGCCACTTTGGGAGATACTCATTTGGGTGGTGTTGATTTTGATAACAATTTGGTGAACCGTCTTGTTGAATTATTTCATAGAAAGTACAAGAAAGATTTGAAGATCAGTGAGAATTCCAAAGCTTTGGGGAGGTTAAGATCAGCATGCGAGAAAGCAAAAAGGTTACTTTCTTCATCATCACAAACAGTTATTGAGCTTGATTCACTATGTGGAGGGATTGATCTACATTTCACTGTTACTAGAGCTTTTTTTGAGGAAATAAACAAGGATTTGTTCAAAAAATGCATGGAAACTGTGGAAAAATGTTTGGTTGAGGTAAAAATTAGTAAAAGCCAAGTTCATGAGTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGATTCAACAACTATTGAAGGAAATGTTTAGAGTCAACGGCGAAGTCAAAGAGCCTTGCAAAAGCATTAATCCAGATGAAGCTGTAGCATATGGCGCCGCAGTTCAAGCAGCAATATTGAATACTGAAGGAGACAAGAAAATTGAAGATTTGTTGCTGTTGGATGTTATGCCTTTTAGTCTTGGTGTTGAAACTAAAGGTGGTGTAATGTCTGTTTTGATTCCGAAGAATACTATGATCCCTACGAAAAAGGAGAATGTATTCGCTATAGCCTCTGATAATCAAGATAGTGTATCGATCAAAGTGTATGAAGGAGAACATGCTAAGACCGAGGACAACTTTTTGCTCGGTAAATTTGAGCTCTCAGCAGCAGGGTGCTCTTTAGTAGTACCAAGAAAGGTTCCAAATATCAATGTTTGTTTTGATGTTGATGTTAATGGAATTTTGGAAGTTACTGCTGAAGATGAGACACAAGGGTTGAAAAAGAAGATCACTATCACCAACATTGAGGGAAGGCTTAGTCCTGAAGAGATGAGAAGAATGATGAGGGATGCCGAGCGGTATAAGGTAGAGGATGAGGAGGTTAAGAAGAAGGTGAAAGCAAAGAACTTGTTTGAGAATTATGTTTATGAAATGAGGGAGAGAGTGAAGAAGCTTGAGAAGGTAATGGAGGAAAGTATAGAATGGCTTGAAAGAAACCAATTGGCAGAAATTGATGAGTTTGAATTCAAGAAGCAGGAGTTGGAAAATAGTATGAAGTTTCTCTAA

Protein sequence

>Msa1019150

MATRKSKSIGIDLGTSYSCIAVWRNNGVEIIPNDQGNRVTPSYVAFTDTERLIGDAAINQLAKNPHNTIFDAKRLIGRRFSDQSVQQDIRFWPFKVVPNHKDKPVIAVNYKGQEKHFSPQEISSMVLSKLKEIAETYLGHDHEVNNAVITVPAYFNNSQRQATKDAGKIAGFNVMRIINEPTAAAIAYGLDKKMWREGEKNVLVFDLGGGTFDVSLVTVDEGMFKVKATLGDTHLGGVDFDNNLVNRLVELFHRKYKKDLKISENSKALGRLRSACEKAKRLLSSSSQTVIELDSLCGGIDLHFTVTRAFFEEINKDLFKKCMETVEKCLVEVKISKSQVHEFVLVGGSTRIPKIQQLLKEMFRVNGEVKEPCKSINPDEAVAYGAAVQAAILNTEGDKKIEDLLLLDVMPFSLGVETKGGVMSVLIPKNTMIPTKKENVFAIASDNQDSVSIKVYEGEHAKTEDNFLLGKFELSAAGCSLVVPRKVPNINVCFDVDVNGILEVTAEDETQGLKKKITITNIEGRLSPEEMRRMMRDAERYKVEDEEVKKKVKAKNLFENYVYEMRERVKKLEKVMEESIEWLERNQLAEIDEFEFKKQELENSMKFL*