Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047440 | KEH21546.1 | 90.323 | 93 | 9 | 0 | 1 | 93 | 18 | 110 | 3.72e-53 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047440 | A0A072TWH2 | 90.323 | 93 | 9 | 0 | 1 | 93 | 18 | 110 | 1.78e-53 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1047440 | 0.803275 | 3.768537e-49 | -8.615850e-47 |
| Msa0610430 | Msa1047440 | 0.804473 | 2.123713e-49 | -8.615850e-47 |
| Msa0657970 | Msa1047440 | 0.805707 | 1.172353e-49 | -8.615850e-47 |
| Msa0679710 | Msa1047440 | 0.806578 | 7.685125e-50 | -8.615850e-47 |
| Msa0696640 | Msa1047440 | 0.809363 | 1.963756e-50 | -8.615850e-47 |
| Msa0157100 | Msa1047440 | 0.813209 | 2.873502e-51 | -8.615850e-47 |
| Msa0157290 | Msa1047440 | 0.802884 | 4.539937e-49 | -8.615850e-47 |
| Msa0205510 | Msa1047440 | 0.809519 | 1.817520e-50 | -8.615850e-47 |
| Msa0379640 | Msa1047440 | 0.806091 | 9.734577e-50 | -8.615850e-47 |
| Msa0439200 | Msa1047440 | 0.832025 | 1.196202e-55 | -8.615850e-47 |
| Msa0993290 | Msa1047440 | 0.800844 | 1.191132e-48 | -8.615850e-47 |
| Msa0993600 | Msa1047440 | 0.802520 | 5.395926e-49 | -8.615850e-47 |
| Msa1012320 | Msa1047440 | 0.837239 | 5.844449e-57 | -8.615850e-47 |
| Msa1014540 | Msa1047440 | 0.809853 | 1.540848e-50 | -8.615850e-47 |
| Msa1047440 | Msa1063510 | 0.808276 | 3.352868e-50 | -8.615850e-47 |
| Msa1047440 | Msa1075540 | 0.804035 | 2.620540e-49 | -8.615850e-47 |
| Msa1047440 | Msa1081680 | 0.802559 | 5.297879e-49 | -8.615850e-47 |
| Msa1047440 | Msa1082500 | 0.814871 | 1.235266e-51 | -8.615850e-47 |
| Msa1047440 | Msa1125760 | 0.800598 | 1.336807e-48 | -8.615850e-47 |
| Msa1047440 | Msa1172670 | 0.813292 | 2.755905e-51 | -8.615850e-47 |
| Msa1047440 | Msa1174040 | 0.809973 | 1.452314e-50 | -8.615850e-47 |
| Msa1047440 | Msa1199220 | 0.807022 | 6.192695e-50 | -8.615850e-47 |
| Msa1047440 | Msa1205130 | 0.805204 | 1.494703e-49 | -8.615850e-47 |
| Msa1047440 | Msa1233890 | 0.813988 | 1.937230e-51 | -8.615850e-47 |
| Msa1047440 | Msa1359040 | 0.803819 | 2.905685e-49 | -8.615850e-47 |
| Msa1047440 | Msa1439320 | 0.801403 | 9.153028e-49 | -8.615850e-47 |
| Msa1047440 | Msa1460830 | 0.806868 | 6.672548e-50 | -8.615850e-47 |
| Msa1047440 | Msa1464940 | 0.801658 | 8.115358e-49 | -8.615850e-47 |
| Msa0258760 | Msa1047440 | 0.804961 | 1.679741e-49 | -8.615850e-47 |
| Msa0279790 | Msa1047440 | 0.816094 | 6.599892e-52 | -8.615850e-47 |
| Msa0280090 | Msa1047440 | 0.810867 | 9.308696e-51 | -8.615850e-47 |
| Msa0339620 | Msa1047440 | 0.802863 | 4.585531e-49 | -8.615850e-47 |
| Msa0350990 | Msa1047440 | 0.803429 | 3.501581e-49 | -8.615850e-47 |
| Msa0351030 | Msa1047440 | 0.805567 | 1.254163e-49 | -8.615850e-47 |
| Msa0484780 | Msa1047440 | 0.807767 | 4.303614e-50 | -8.615850e-47 |
| Msa0861130 | Msa1047440 | 0.803201 | 3.903485e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047440 | MtrunA17_Chr7g0215471 | 90.323 | 93 | 9 | 0 | 1 | 93 | 5 | 97 | 3.57e-57 | 171 |
| Msa1047440 | MtrunA17_Chr7g0215501 | 81.429 | 70 | 13 | 0 | 1 | 70 | 1 | 70 | 1.00e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047440 | AT1G47820.1 | 55.714 | 70 | 30 | 1 | 1 | 69 | 1 | 70 | 3.70e-21 | 80.5 |
| Msa1047440 | AT1G47820.2 | 55.714 | 70 | 30 | 1 | 1 | 69 | 1 | 70 | 3.70e-21 | 80.5 |
Find 24 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTTTATTGAAGAATTTA+AGG | 0.202532 | 7_2:-8314403 | Msa1047440:three_prime_UTR |
| AGAATTTAAGGAATATTATT+TGG | 0.230448 | 7_2:-8314391 | Msa1047440:three_prime_UTR |
| CATACCAATATTTAACTTCA+TGG | 0.252212 | 7_2:-8314356 | Msa1047440:three_prime_UTR |
| GCTCAAACACGACAGGATTT+AGG | 0.308005 | 7_2:+8317135 | None:intergenic |
| ATTTCCATGAAGTTAAATAT+TGG | 0.313903 | 7_2:+8314352 | None:intergenic |
| CACAGAGTCATATTCTGTTC+AGG | 0.414511 | 7_2:-8314691 | Msa1047440:CDS |
| GTGGCATTCACCTGAGGTCT+AGG | 0.432602 | 7_2:+8314726 | None:intergenic |
| ACAAAGCATGGCCGTATTGA+AGG | 0.443308 | 7_2:-8314622 | Msa1047440:CDS |
| TGTTATGAAATCCTTCAATA+CGG | 0.467267 | 7_2:+8314611 | None:intergenic |
| TGACAATGATGTTGCTAAGA+AGG | 0.469068 | 7_2:-8314532 | Msa1047440:CDS |
| TATTCTGTTCAGGCAATCAA+TGG | 0.473465 | 7_2:-8314681 | Msa1047440:CDS |
| TGCAGTGCTTCCTAGACCTC+AGG | 0.506425 | 7_2:-8314736 | Msa1047440:CDS |
| ATTTAAGGAATATTATTTGG+TGG | 0.519709 | 7_2:-8314388 | Msa1047440:three_prime_UTR |
| TGCTAAGAAGGCTCAAGTAA+AGG | 0.526582 | 7_2:-8314520 | Msa1047440:CDS |
| GAAGCTTCTAACGACTCGTC+TGG | 0.528210 | 7_2:+8314564 | None:intergenic |
| CGAGTCGTTAGAAGCTTCCT+CGG | 0.555746 | 7_2:-8314559 | Msa1047440:CDS |
| GACTCGTCTGGAACATCTTG+AGG | 0.569302 | 7_2:+8314576 | None:intergenic |
| TGAAGCAGCTCAAACACGAC+AGG | 0.596549 | 7_2:+8317128 | None:intergenic |
| TAACATGAAAGAACAAAGCA+TGG | 0.616394 | 7_2:-8314634 | Msa1047440:CDS |
| GTGAATGCCACATTTCGTCT+CGG | 0.619096 | 7_2:-8314714 | Msa1047440:CDS |
| AACATCATTGTCATCTTCCG+AGG | 0.626572 | 7_2:+8314542 | None:intergenic |
| CGAAATGTGGCATTCACCTG+AGG | 0.643629 | 7_2:+8314720 | None:intergenic |
| CTCTGTGCCGAGACGAAATG+TGG | 0.646370 | 7_2:+8314707 | None:intergenic |
| ATATGTCTAAAATGTATGAG+TGG | 0.669924 | 7_2:-8314466 | Msa1047440:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATACTATTCTAAATA+AGG | + | chr7_2:8315857-8315876 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAACATGA+AGG | + | chr7_2:8317089-8317108 | None:intergenic | 10.0% |
| !! | ATAAACTGAAAATAGTTTAT+GGG | + | chr7_2:8314675-8314694 | None:intergenic | 15.0% |
| !! | AATAAACTGAAAATAGTTTA+TGG | + | chr7_2:8314676-8314695 | None:intergenic | 15.0% |
| !!! | TATTTTCAGTTTATTTTCAT+AGG | - | chr7_2:8314681-8314700 | Msa1047440:CDS | 15.0% |
| !! | TAGATAAATAGTTAATTCTT+TGG | - | chr7_2:8314906-8314925 | Msa1047440:intron | 15.0% |
| !!! | ACTTATAACTAATATTTTCT+TGG | - | chr7_2:8315896-8315915 | Msa1047440:intron | 15.0% |
| !!! | CTTATAACTAATATTTTCTT+GGG | - | chr7_2:8315897-8315916 | Msa1047440:intron | 15.0% |
| !!! | TGTTGATGAAAAATTTTATA+GGG | + | chr7_2:8316000-8316019 | None:intergenic | 15.0% |
| !!! | ATGTTGATGAAAAATTTTAT+AGG | + | chr7_2:8316001-8316020 | None:intergenic | 15.0% |
| !! | ATATTTCAAAATATATCCAA+AGG | + | chr7_2:8316498-8316517 | None:intergenic | 15.0% |
| !! | TTAGTTTATTGAAGAATTTA+AGG | - | chr7_2:8317003-8317022 | Msa1047440:intron | 15.0% |
| !! | AGAATTTAAGGAATATTATT+TGG | - | chr7_2:8317015-8317034 | Msa1047440:intron | 15.0% |
| !! | AAAAAGAATCATTAAAACTA+TGG | + | chr7_2:8317135-8317154 | None:intergenic | 15.0% |
| !! | AATGTAGTTTATGAAAAAAC+AGG | - | chr7_2:8315042-8315061 | Msa1047440:intron | 20.0% |
| !! | ATGTAGTTTATGAAAAAACA+GGG | - | chr7_2:8315043-8315062 | Msa1047440:intron | 20.0% |
| !!! | TTTGAGTAAATTTTATCTAC+TGG | - | chr7_2:8315175-8315194 | Msa1047440:intron | 20.0% |
| !!! | ACATGATTTCGATTTTTATA+AGG | - | chr7_2:8315739-8315758 | Msa1047440:intron | 20.0% |
| !!! | TTAGAATAGTATTTTTTGAG+AGG | - | chr7_2:8315860-8315879 | Msa1047440:intron | 20.0% |
| !! | CAAAATTCTGAATATTCATA+GGG | + | chr7_2:8315940-8315959 | None:intergenic | 20.0% |
| !! | ACAAAATTCTGAATATTCAT+AGG | + | chr7_2:8315941-8315960 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | chr7_2:8316130-8316149 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | chr7_2:8316129-8316148 | None:intergenic | 20.0% |
| !!! | AAATTTCCATCAACATTTTT+TGG | - | chr7_2:8316069-8316088 | Msa1047440:intron | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+TGG | - | chr7_2:8316130-8316149 | Msa1047440:intron | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | - | chr7_2:8316160-8316179 | Msa1047440:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | - | chr7_2:8316161-8316180 | Msa1047440:intron | 20.0% |
| !!! | TTAATTAACCCTATTTTCTT+TGG | - | chr7_2:8316193-8316212 | Msa1047440:intron | 20.0% |
| !! | AATATTATAAAGAGATGAGA+AGG | - | chr7_2:8316222-8316241 | Msa1047440:intron | 20.0% |
| !! | ATTTAAGGAATATTATTTGG+TGG | - | chr7_2:8317018-8317037 | Msa1047440:intron | 20.0% |
| !! | ATTTCCATGAAGTTAAATAT+TGG | + | chr7_2:8317057-8317076 | None:intergenic | 20.0% |
| !! | AAGAAAATCGAAATGTTTTG+CGG | + | chr7_2:8314375-8314394 | None:intergenic | 25.0% |
| ! | TATGTTAACTGTTTGATATG+AGG | - | chr7_2:8314809-8314828 | Msa1047440:intron | 25.0% |
| ! | AATAGTTAATTCTTTGGACT+CGG | - | chr7_2:8314912-8314931 | Msa1047440:intron | 25.0% |
| ! | AATAAAGAAACGAAGAAACT+AGG | + | chr7_2:8315450-8315469 | None:intergenic | 25.0% |
| ! | TAGTTTCTTCGTTTCTTTAT+TGG | - | chr7_2:8315449-8315468 | Msa1047440:intron | 25.0% |
| ! | TGAAATACTTAGACTTTGTT+TGG | - | chr7_2:8315774-8315793 | Msa1047440:intron | 25.0% |
| !! | GAAATACTTAGACTTTGTTT+GGG | - | chr7_2:8315775-8315794 | Msa1047440:intron | 25.0% |
| !!! | AATAGTATTTTTTGAGAGGA+TGG | - | chr7_2:8315864-8315883 | Msa1047440:intron | 25.0% |
| !! | GCTGATGGAAAATTTTTATA+GGG | + | chr7_2:8316031-8316050 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAATTTTTAT+AGG | + | chr7_2:8316032-8316051 | None:intergenic | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | + | chr7_2:8316096-8316115 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | + | chr7_2:8316097-8316116 | None:intergenic | 25.0% |
| ! | TTCTCAAACCAAAGAAAATA+GGG | + | chr7_2:8316204-8316223 | None:intergenic | 25.0% |
| ! | ATTCTCAAACCAAAGAAAAT+AGG | + | chr7_2:8316205-8316224 | None:intergenic | 25.0% |
| ! | TATGAGACTAAGAACAAATA+CGG | - | chr7_2:8316448-8316467 | Msa1047440:intron | 25.0% |
| ! | TTTGAAAATACTGTTTCCTT+TGG | - | chr7_2:8316479-8316498 | Msa1047440:intron | 25.0% |
| !!! | TTTAAAAGTAGCACTGATTA+CGG | + | chr7_2:8316577-8316596 | None:intergenic | 25.0% |
| ! | AATTATTCAAAATGCAGAGA+TGG | - | chr7_2:8316631-8316650 | Msa1047440:intron | 25.0% |
| ! | TGTTATGAAATCCTTCAATA+CGG | + | chr7_2:8316798-8316817 | None:intergenic | 25.0% |
| !! | ATATGTCTAAAATGTATGAG+TGG | - | chr7_2:8316940-8316959 | Msa1047440:intron | 25.0% |
| !! | CATACCAATATTTAACTTCA+TGG | - | chr7_2:8317050-8317069 | Msa1047440:intron | 25.0% |
| !! | CAGTTTATTTTCATAGGTCT+TGG | - | chr7_2:8314687-8314706 | Msa1047440:CDS | 30.0% |
| ! | CTTTCAATTTTGTATGCTTG+AGG | - | chr7_2:8314844-8314863 | Msa1047440:intron | 30.0% |
| ATAGTTAATTCTTTGGACTC+GGG | - | chr7_2:8314913-8314932 | Msa1047440:intron | 30.0% | |
| CAAAATAAGCCTAATCCAAA+CGG | - | chr7_2:8315149-8315168 | Msa1047440:intron | 30.0% | |
| AAAATAAGCCTAATCCAAAC+GGG | - | chr7_2:8315150-8315169 | Msa1047440:intron | 30.0% | |
| TAAACATTTGTGAGACTGTT+TGG | - | chr7_2:8315200-8315219 | Msa1047440:intron | 30.0% | |
| AAACATTTGTGAGACTGTTT+GGG | - | chr7_2:8315201-8315220 | Msa1047440:intron | 30.0% | |
| ! | GGAAATTTTCCATAAACAGA+TGG | + | chr7_2:8315256-8315275 | None:intergenic | 30.0% |
| AAGCTATTGTTGAGAGTTTA+TGG | + | chr7_2:8315277-8315296 | None:intergenic | 30.0% | |
| TAAACTGTTTACATCCAAAC+AGG | - | chr7_2:8315405-8315424 | Msa1047440:intron | 30.0% | |
| AAACTGTTTACATCCAAACA+GGG | - | chr7_2:8315406-8315425 | Msa1047440:intron | 30.0% | |
| ! | GCTTTTCAACTAACGAAAAA+AGG | + | chr7_2:8315679-8315698 | None:intergenic | 30.0% |
| TGTTCAACAATAGCACAATA+TGG | + | chr7_2:8315722-8315741 | None:intergenic | 30.0% | |
| AAGTCTAAGTATTTCACTTG+AGG | + | chr7_2:8315770-8315789 | None:intergenic | 30.0% | |
| !! | GTTGATGGAAATTTTTGACA+GGG | + | chr7_2:8316063-8316082 | None:intergenic | 30.0% |
| !! | TGTTGATGGAAATTTTTGAC+AGG | + | chr7_2:8316064-8316083 | None:intergenic | 30.0% |
| TTCATTGAACCAAAACTCTT+CGG | + | chr7_2:8316312-8316331 | None:intergenic | 30.0% | |
| AGAATATACTGACGATAAAC+GGG | + | chr7_2:8316378-8316397 | None:intergenic | 30.0% | |
| GAGAATATACTGACGATAAA+CGG | + | chr7_2:8316379-8316398 | None:intergenic | 30.0% | |
| TAACATGAAAGAACAAAGCA+TGG | - | chr7_2:8316772-8316791 | Msa1047440:intron | 30.0% | |
| CTGAAAATAGTTTATGGGCA+TGG | + | chr7_2:8314670-8314689 | None:intergenic | 35.0% | |
| GTTGAGCTTATCTTGACATT+TGG | - | chr7_2:8314870-8314889 | Msa1047440:intron | 35.0% | |
| TAGTTAATTCTTTGGACTCG+GGG | - | chr7_2:8314914-8314933 | Msa1047440:intron | 35.0% | |
| AATTTACTCAAATGCCCGTT+TGG | + | chr7_2:8315167-8315186 | None:intergenic | 35.0% | |
| ACGCTTATAGCATAAGCTAT+AGG | + | chr7_2:8315380-8315399 | None:intergenic | 35.0% | |
| CTAGGAAATGAAGGAAACTA+AGG | + | chr7_2:8315432-8315451 | None:intergenic | 35.0% | |
| ACGAAGAAACTAGGAAATGA+AGG | + | chr7_2:8315441-8315460 | None:intergenic | 35.0% | |
| ! | TCTTCTATCTGATCTAGTTC+TGG | - | chr7_2:8315518-8315537 | Msa1047440:intron | 35.0% |
| TTCAGCTATTGCATTTCAGA+AGG | + | chr7_2:8315585-8315604 | None:intergenic | 35.0% | |
| CAACAATAGCACAATATGGA+TGG | + | chr7_2:8315718-8315737 | None:intergenic | 35.0% | |
| ! | TTAGACTTTGTTTGGGAGTT+AGG | - | chr7_2:8315782-8315801 | Msa1047440:intron | 35.0% |
| TAGGGACCAAAAAATGTTGA+TGG | + | chr7_2:8316078-8316097 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | - | chr7_2:8316087-8316106 | Msa1047440:intron | 35.0% | |
| !! | TAAAGCTTTGTTTGCGAGTT+TGG | + | chr7_2:8316425-8316444 | None:intergenic | 35.0% |
| CAAAGACAACAGAACAAACT+GGG | + | chr7_2:8316534-8316553 | None:intergenic | 35.0% | |
| TCAAAGACAACAGAACAAAC+TGG | + | chr7_2:8316535-8316554 | None:intergenic | 35.0% | |
| TATTCTGTTCAGGCAATCAA+TGG | - | chr7_2:8316725-8316744 | Msa1047440:intron | 35.0% | |
| TGACAATGATGTTGCTAAGA+AGG | - | chr7_2:8316874-8316893 | Msa1047440:intron | 35.0% | |
| TCTCTCTCTCTCTCTCAATA+AGG | - | chr7_2:8314345-8314364 | Msa1047440:three_prime_UTR | 40.0% | |
| GTTCTGCTTGAGGAATTGTT+AGG | - | chr7_2:8314558-8314577 | Msa1047440:CDS | 40.0% | |
| ! | GGGTCTGTTTGATTGACTTA+GGG | - | chr7_2:8314934-8314953 | Msa1047440:intron | 40.0% |
| GTGACATGTCCATCTGTTTA+TGG | - | chr7_2:8315244-8315263 | Msa1047440:intron | 40.0% | |
| TGGATGGCTTTCAAACTCAT+GGG | + | chr7_2:8315702-8315721 | None:intergenic | 40.0% | |
| ATGGATGGCTTTCAAACTCA+TGG | + | chr7_2:8315703-8315722 | None:intergenic | 40.0% | |
| TTTGTTTGGGAGTTAGGATG+AGG | - | chr7_2:8315788-8315807 | Msa1047440:intron | 40.0% | |
| AGGAAATAGGAGGAAGGAAA+AGG | - | chr7_2:8315817-8315836 | Msa1047440:intron | 40.0% | |
| ACAGGGACTAAAAATGCTGA+TGG | + | chr7_2:8316046-8316065 | None:intergenic | 40.0% | |
| TGTCGAGGAAAGACTTTGAA+GGG | + | chr7_2:8316268-8316287 | None:intergenic | 40.0% | |
| CTAACTCAAGAAATGTGTCG+AGG | + | chr7_2:8316283-8316302 | None:intergenic | 40.0% | |
| ! | TAGTCCTTACCGAAGAGTTT+TGG | - | chr7_2:8316300-8316319 | Msa1047440:intron | 40.0% |
| TGAACCAAAACTCTTCGGTA+AGG | + | chr7_2:8316307-8316326 | None:intergenic | 40.0% | |
| GAAAAGTAAACCTCCATGCA+AGG | - | chr7_2:8316332-8316351 | Msa1047440:intron | 40.0% | |
| TACTGACGATAAACGGGAAA+GGG | + | chr7_2:8316372-8316391 | None:intergenic | 40.0% | |
| ATACTGACGATAAACGGGAA+AGG | + | chr7_2:8316373-8316392 | None:intergenic | 40.0% | |
| GAGACTAAGAACAAATACGG+TGG | - | chr7_2:8316451-8316470 | Msa1047440:intron | 40.0% | |
| CAACAGAACAAACTGGGTAT+TGG | + | chr7_2:8316528-8316547 | None:intergenic | 40.0% | |
| CACAGAGTCATATTCTGTTC+AGG | - | chr7_2:8316715-8316734 | Msa1047440:intron | 40.0% | |
| AACATCATTGTCATCTTCCG+AGG | + | chr7_2:8316867-8316886 | None:intergenic | 40.0% | |
| TGCTAAGAAGGCTCAAGTAA+AGG | - | chr7_2:8316886-8316905 | Msa1047440:intron | 40.0% | |
| ! | GGGGTCTGTTTGATTGACTT+AGG | - | chr7_2:8314933-8314952 | Msa1047440:intron | 45.0% |
| ! | TGATTGACTTAGGGCACGTT+TGG | - | chr7_2:8314943-8314962 | Msa1047440:intron | 45.0% |
| ACTTAGGGCACGTTTGGATT+AGG | - | chr7_2:8314949-8314968 | Msa1047440:intron | 45.0% | |
| CTCAAATGCCCGTTTGGATT+AGG | + | chr7_2:8315161-8315180 | None:intergenic | 45.0% | |
| AAGGAAACTAAGGCCCTGTT+TGG | + | chr7_2:8315422-8315441 | None:intergenic | 45.0% | |
| GGATGGCTTTCAAACTCATG+GGG | + | chr7_2:8315701-8315720 | None:intergenic | 45.0% | |
| GTGTCGAGGAAAGACTTTGA+AGG | + | chr7_2:8316269-8316288 | None:intergenic | 45.0% | |
| AAGTAAACCTCCATGCAAGG+TGG | - | chr7_2:8316335-8316354 | Msa1047440:intron | 45.0% | |
| AGTAAACCTCCATGCAAGGT+GGG | - | chr7_2:8316336-8316355 | Msa1047440:intron | 45.0% | |
| ACTGACGATAAACGGGAAAG+GGG | + | chr7_2:8316371-8316390 | None:intergenic | 45.0% | |
| !! | AGCTTTGTTTGCGAGTTTGG+AGG | + | chr7_2:8316422-8316441 | None:intergenic | 45.0% |
| GTGAATGCCACATTTCGTCT+CGG | - | chr7_2:8316692-8316711 | Msa1047440:intron | 45.0% | |
| ACAAAGCATGGCCGTATTGA+AGG | - | chr7_2:8316784-8316803 | Msa1047440:intron | 45.0% | |
| TGAAGCAGCTCAAACACGAC+AGG | + | chr7_2:8314281-8314300 | None:intergenic | 50.0% | |
| GTCTGTGTGTGTTCTGCTTG+AGG | - | chr7_2:8314548-8314567 | Msa1047440:CDS | 50.0% | |
| GATGAGGCCTTGGAGGAAAT+AGG | - | chr7_2:8315804-8315823 | Msa1047440:intron | 50.0% | |
| CCTTCCTCCTATTTCCTCCA+AGG | + | chr7_2:8315814-8315833 | None:intergenic | 50.0% | |
| CCTTGGAGGAAATAGGAGGA+AGG | - | chr7_2:8315811-8315830 | Msa1047440:intron | 50.0% | |
| GTAAACCTCCATGCAAGGTG+GGG | - | chr7_2:8316337-8316356 | Msa1047440:intron | 50.0% | |
| TAAACCTCCATGCAAGGTGG+GGG | - | chr7_2:8316338-8316357 | Msa1047440:intron | 50.0% | |
| AAATAGTCCCCCACCTTGCA+TGG | + | chr7_2:8316348-8316367 | None:intergenic | 50.0% | |
| GAGTTTGGAGGAGAAGTGAG+GGG | + | chr7_2:8316410-8316429 | None:intergenic | 50.0% | |
| CGAGTTTGGAGGAGAAGTGA+GGG | + | chr7_2:8316411-8316430 | None:intergenic | 50.0% | |
| CGAAATGTGGCATTCACCTG+AGG | + | chr7_2:8316689-8316708 | None:intergenic | 50.0% | |
| ! | GACTCGTCTGGAACATCTTG+AGG | + | chr7_2:8316833-8316852 | None:intergenic | 50.0% |
| GAAGCTTCTAACGACTCGTC+TGG | + | chr7_2:8316845-8316864 | None:intergenic | 50.0% | |
| CGAGTCGTTAGAAGCTTCCT+CGG | - | chr7_2:8316847-8316866 | Msa1047440:intron | 50.0% | |
| TGGGAGTTAGGATGAGGCCT+TGG | - | chr7_2:8315794-8315813 | Msa1047440:intron | 55.0% | |
| GAGTTAGGATGAGGCCTTGG+AGG | - | chr7_2:8315797-8315816 | Msa1047440:intron | 55.0% | |
| GAGGCCTTGGAGGAAATAGG+AGG | - | chr7_2:8315807-8315826 | Msa1047440:intron | 55.0% | |
| GGAGAAGTGAGGGGAAGAGT+TGG | + | chr7_2:8316401-8316420 | None:intergenic | 55.0% | |
| GCGAGTTTGGAGGAGAAGTG+AGG | + | chr7_2:8316412-8316431 | None:intergenic | 55.0% | |
| TGCAGTGCTTCCTAGACCTC+AGG | - | chr7_2:8316670-8316689 | Msa1047440:intron | 55.0% | |
| GTGGCATTCACCTGAGGTCT+AGG | + | chr7_2:8316683-8316702 | None:intergenic | 55.0% | |
| CTCTGTGCCGAGACGAAATG+TGG | + | chr7_2:8316702-8316721 | None:intergenic | 55.0% | |
| TAGTCCCCCACCTTGCATGG+AGG | + | chr7_2:8316345-8316364 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 8314272 | 8317156 | 8314272 | ID=Msa1047440;Name=Msa1047440 |
| chr7_2 | mRNA | 8314272 | 8317156 | 8314272 | ID=Msa1047440-mRNA-1;Parent=Msa1047440;Name=Msa1047440-mRNA-1;_AED=0.16;_eAED=0.16;_QI=95|0|0.5|1|0|0.5|2|225|93 |
| chr7_2 | exon | 8314272 | 8314778 | 8314272 | ID=Msa1047440-mRNA-1:exon:2199;Parent=Msa1047440-mRNA-1 |
| chr7_2 | exon | 8317062 | 8317156 | 8317062 | ID=Msa1047440-mRNA-1:exon:2198;Parent=Msa1047440-mRNA-1 |
| chr7_2 | five_prime_UTR | 8317062 | 8317156 | 8317062 | ID=Msa1047440-mRNA-1:five_prime_utr;Parent=Msa1047440-mRNA-1 |
| chr7_2 | CDS | 8314497 | 8314778 | 8314497 | ID=Msa1047440-mRNA-1:cds;Parent=Msa1047440-mRNA-1 |
| chr7_2 | three_prime_UTR | 8314272 | 8314496 | 8314272 | ID=Msa1047440-mRNA-1:three_prime_utr;Parent=Msa1047440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
