AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1304810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304810 MtrunA17_Chr2g0280911 100.000 185 0 0 1 185 1 185 4.38e-138 387
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1304810 AT1G61620.1 80.541 185 36 0 1 185 1 185 6.96e-115 329

Find 49 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGTTTATGGGCTTCTTC+TGG 0.130326 8_3:+67991933 None:intergenic
TTAGGACAATGAAGGCATTT+TGG 0.269797 8_3:-67988270 Msa1304810:CDS
TGATGATTGATTTGAGTTCT+AGG 0.286126 8_3:+67991874 None:intergenic
CCTAAGGGCTTCTTCCTCAT+AGG 0.405370 8_3:+67988288 None:intergenic
TCTACTTTAACAGAAGCTTC+TGG 0.415630 8_3:+67988232 None:intergenic
GGACAGATGGTGCTTGTAGA+AGG 0.418079 8_3:+67988205 None:intergenic
GATCCTATGAGCTGCCAAAA+AGG 0.432432 8_3:-67991631 Msa1304810:CDS
GAAAAGCGTAAACTCGGTTA+TGG 0.432671 8_3:-67991730 Msa1304810:CDS
GAATGCACTCTTTGCAGAAA+AGG 0.439719 8_3:+67991605 None:intergenic
GGAACGCAGAAGGAGAGGTT+GGG 0.470378 8_3:-67991709 Msa1304810:CDS
ACAAGCATCGAAGGGTTTGA+TGG 0.473841 8_3:+67991678 None:intergenic
CTCCTTGCCTTCCGGACAGA+TGG 0.474833 8_3:+67988192 None:intergenic
TTCTACAAGCACCATCTGTC+CGG 0.484063 8_3:-67988203 Msa1304810:CDS
AATTATAACCGTGACAAGAA+TGG 0.487405 8_3:-67988343 Msa1304810:CDS
TGGAACGCAGAAGGAGAGGT+TGG 0.501288 8_3:-67991710 Msa1304810:CDS
CGTGACAAGAATGGTTTCCA+TGG 0.502082 8_3:-67988334 Msa1304810:CDS
AAAATGCCTTCATTGTCCTA+AGG 0.510580 8_3:+67988272 None:intergenic
CGGTAAACCGCCACAGAGGA+TGG 0.513855 8_3:+67991903 None:intergenic
CCTTCACACTGTTTGCCCCA+TGG 0.518851 8_3:+67988317 None:intergenic
CCTATGAGGAAGAAGCCCTT+AGG 0.523457 8_3:-67988288 Msa1304810:CDS
AACCGCCACAGAGGATGGCT+TGG 0.526777 8_3:+67991908 None:intergenic
CACCATCTGTCCGGAAGGCA+AGG 0.529022 8_3:-67988194 Msa1304810:CDS
AAATGCCTTCATTGTCCTAA+GGG 0.533013 8_3:+67988273 None:intergenic
CTCAGAAGAAAGACATTCAA+AGG 0.533692 8_3:-67991567 Msa1304810:intron
ACAGAGGGAACAAGCATCGA+AGG 0.543742 8_3:+67991669 None:intergenic
TAATTTCTATCACTGTATTG+TGG 0.564386 8_3:+67988361 None:intergenic
GTGACAAGAATGGTTTCCAT+GGG 0.573316 8_3:-67988333 Msa1304810:CDS
GCATTTGATCAGCAAAATCA+TGG 0.574722 8_3:-67988391 Msa1304810:CDS
GAAGCTTCTGGTGTAGCAGA+AGG 0.576976 8_3:+67988244 None:intergenic
GAGGCATTTCTGTGATAGAT+CGG 0.582822 8_3:+67991800 None:intergenic
AGAAGCCCTTAGGACAATGA+AGG 0.584899 8_3:-67988278 Msa1304810:CDS
CATGGAAACCATTCTTGTCA+CGG 0.586120 8_3:+67988335 None:intergenic
TGTGAAGGTCACTTCCTATG+AGG 0.588979 8_3:-67988302 Msa1304810:CDS
TACGATGAAAAGCGTAAACT+CGG 0.604188 8_3:-67991736 Msa1304810:CDS
GAACGCAGAAGGAGAGGTTG+GGG 0.614551 8_3:-67991708 Msa1304810:CDS
ACAAGCACCATCTGTCCGGA+AGG 0.622153 8_3:-67988199 Msa1304810:CDS
GCAGAAGGAGAGGTTGGGGA+AGG 0.622647 8_3:-67991704 Msa1304810:CDS
ACTCGGTTATGGAACGCAGA+AGG 0.622656 8_3:-67991719 Msa1304810:CDS
GATTAACGATTTGAGACAGA+GGG 0.630496 8_3:+67991654 None:intergenic
CCATGGGGCAAACAGTGTGA+AGG 0.639816 8_3:-67988317 Msa1304810:CDS
GTTATGGAACGCAGAAGGAG+AGG 0.647965 8_3:-67991714 Msa1304810:CDS
AACCAAGCCATCCTCTGTGG+CGG 0.650968 8_3:-67991910 Msa1304810:five_prime_UTR
CAGAGGGAACAAGCATCGAA+GGG 0.655606 8_3:+67991670 None:intergenic
CGATTAACGATTTGAGACAG+AGG 0.657638 8_3:+67991653 None:intergenic
TTGTTCTTCGAATGTCGCTG+AGG 0.663075 8_3:+67991781 None:intergenic
CAAAACCAAGCCATCCTCTG+TGG 0.702047 8_3:-67991913 Msa1304810:five_prime_UTR
ATTTGAGTTCTAGGTCGTCG+CGG 0.729985 8_3:+67991883 None:intergenic
GTCGCGGTAAACCGCCACAG+AGG 0.732081 8_3:+67991899 None:intergenic
TGACAAGAATGGTTTCCATG+GGG 0.745306 8_3:-67988332 Msa1304810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTGAAATTATGATAT+GGG - chr8_3:67988656-67988675 Msa1304810:intron 10.0%
!!! TTAATGTTATTTTTTTATGA+TGG + chr8_3:67990283-67990302 None:intergenic 10.0%
!!! TAATTTTTTATCTATGATTT+TGG - chr8_3:67990965-67990984 Msa1304810:intron 10.0%
!!! AATTTTTTATCTATGATTTT+GGG - chr8_3:67990966-67990985 Msa1304810:intron 10.0%
!!! TTTATTTTATTTTTTTGAGA+GGG + chr8_3:67991549-67991568 None:intergenic 10.0%
!!! TTTTATTTTATTTTTTTGAG+AGG + chr8_3:67991550-67991569 None:intergenic 10.0%
!! GTTTAATTGAAATTATGATA+TGG - chr8_3:67988655-67988674 Msa1304810:intron 15.0%
!!! TTATTTTTTAGAAGAAAAAG+TGG - chr8_3:67991383-67991402 Msa1304810:intron 15.0%
!!! TATTTTTTAGAAGAAAAAGT+GGG - chr8_3:67991384-67991403 Msa1304810:intron 15.0%
!!! ATTTCCATTTTCAATAAAAT+AGG - chr8_3:67991615-67991634 Msa1304810:CDS 15.0%
!! AAAAATAAACCAAATCAAAC+AGG + chr8_3:67988787-67988806 None:intergenic 20.0%
!!! AACATAAAATGATGATGAAT+TGG - chr8_3:67989359-67989378 Msa1304810:intron 20.0%
!!! TATGTTTTGTTACAATGTAT+TGG + chr8_3:67989629-67989648 None:intergenic 20.0%
!! TAGATTAAAATGAAATCAAG+AGG + chr8_3:67989868-67989887 None:intergenic 20.0%
!!! TCTTGATTTCATTTTAATCT+AGG - chr8_3:67989867-67989886 Msa1304810:intron 20.0%
!!! ATTTCATTTTAATCTAGGAT+TGG - chr8_3:67989872-67989891 Msa1304810:intron 20.0%
!!! TTTTAATTGAAGTATGATTC+AGG - chr8_3:67990156-67990175 Msa1304810:intron 20.0%
!!! TGTTATTTTTTTATGATGGT+GGG + chr8_3:67990279-67990298 None:intergenic 20.0%
!!! ATGTTATTTTTTTATGATGG+TGG + chr8_3:67990280-67990299 None:intergenic 20.0%
!!! ATAACATTAATGCTTTTCAA+AGG - chr8_3:67990293-67990312 Msa1304810:intron 20.0%
!!! TAACATTAATGCTTTTCAAA+GGG - chr8_3:67990294-67990313 Msa1304810:intron 20.0%
!!! TTCTTTTAAGAACATTAAAG+TGG - chr8_3:67990438-67990457 Msa1304810:intron 20.0%
!! TTTAAGAACATTAAGAATCA+TGG + chr8_3:67990650-67990669 None:intergenic 20.0%
!!! ACTTTTGTATCTATGATTTT+GGG + chr8_3:67990872-67990891 None:intergenic 20.0%
!!! TACTTTTGTATCTATGATTT+TGG + chr8_3:67990873-67990892 None:intergenic 20.0%
!! AAAAAATAATGTAAAGCGAT+GGG + chr8_3:67991372-67991391 None:intergenic 20.0%
!! TAAAAAATAATGTAAAGCGA+TGG + chr8_3:67991373-67991392 None:intergenic 20.0%
!!! ATATGGGTTGTTTAATTTGT+TGG - chr8_3:67988672-67988691 Msa1304810:intron 25.0%
!!! CAATGTTTTGTTTGTTACTT+AGG - chr8_3:67988731-67988750 Msa1304810:intron 25.0%
!! AAGATACAATTTTCGTTAGT+GGG + chr8_3:67988874-67988893 None:intergenic 25.0%
! ATGATTGAAATAAGCTGAAA+AGG - chr8_3:67989091-67989110 Msa1304810:intron 25.0%
! TGATTGAAATAAGCTGAAAA+GGG - chr8_3:67989092-67989111 Msa1304810:intron 25.0%
! TCAATGAATTTCATGTTTCT+GGG + chr8_3:67989252-67989271 None:intergenic 25.0%
! ATCAATGAATTTCATGTTTC+TGG + chr8_3:67989253-67989272 None:intergenic 25.0%
! TGAAATCCTAAAATGAATCT+TGG - chr8_3:67989569-67989588 Msa1304810:intron 25.0%
!! ATTTGAGAATCTTCCTTTTA+TGG + chr8_3:67989772-67989791 None:intergenic 25.0%
!!! GTTATTTTTTTATGATGGTG+GGG + chr8_3:67990278-67990297 None:intergenic 25.0%
! AATCAATAGCTAACATAGAA+AGG - chr8_3:67990319-67990338 Msa1304810:intron 25.0%
! TGAAACTCAAACTCAATATA+AGG + chr8_3:67990413-67990432 None:intergenic 25.0%
! TTAAGAACATTAAAGTGGAA+TGG - chr8_3:67990443-67990462 Msa1304810:intron 25.0%
! CAACTCAATATAATGCTATT+GGG - chr8_3:67990686-67990705 Msa1304810:intron 25.0%
! TCTGTTAAATTTCCATCAAT+TGG - chr8_3:67990992-67991011 Msa1304810:intron 25.0%
!! TCCATTTTCAATAAAATAGG+AGG - chr8_3:67991618-67991637 Msa1304810:CDS 25.0%
! AGAAAAATTAATGTTGCAGA+AGG - chr8_3:67991688-67991707 Msa1304810:CDS 25.0%
! TAATTTCTATCACTGTATTG+TGG + chr8_3:67991758-67991777 None:intergenic 25.0%
!! TGATGATTGATTTGAGTTCT+AGG + chr8_3:67988245-67988264 None:intergenic 30.0%
TAATAAGTGCCTGTTTGATT+TGG - chr8_3:67988775-67988794 Msa1304810:intron 30.0%
! GAAGATACAATTTTCGTTAG+TGG + chr8_3:67988875-67988894 None:intergenic 30.0%
CATTATTCATAAGCTTGTCA+CGG + chr8_3:67988921-67988940 None:intergenic 30.0%
!!! AGTTTTGTTACAAGTGCTTA+GGG + chr8_3:67988997-67989016 None:intergenic 30.0%
TCATTAGCTAATAGCTATCT+TGG - chr8_3:67989064-67989083 Msa1304810:intron 30.0%
TGAAAAGGGAAAACAACTTA+TGG - chr8_3:67989106-67989125 Msa1304810:intron 30.0%
AACTATTGGAGGAATACTAA+GGG + chr8_3:67989223-67989242 None:intergenic 30.0%
AAACTATTGGAGGAATACTA+AGG + chr8_3:67989224-67989243 None:intergenic 30.0%
TAATACAGGTCTGTTTGAAT+TGG + chr8_3:67989504-67989523 None:intergenic 30.0%
AACTATTAGGTGGATAATAC+AGG + chr8_3:67989518-67989537 None:intergenic 30.0%
! CTCAAACCAAGATTCATTTT+AGG + chr8_3:67989578-67989597 None:intergenic 30.0%
ATTCAAGCCAGAAATATTCT+TGG + chr8_3:67989832-67989851 None:intergenic 30.0%
AGAGCAACTCTTTATTAAGT+GGG + chr8_3:67989952-67989971 None:intergenic 30.0%
TATGATATGAGTTCAAAGTG+AGG + chr8_3:67990070-67990089 None:intergenic 30.0%
AAACTCAATATAAGGCTACT+CGG + chr8_3:67990405-67990424 None:intergenic 30.0%
ATTAAAGTGGAATGGTTTAG+TGG - chr8_3:67990451-67990470 Msa1304810:intron 30.0%
!!! TGAGATAGTTTGCTTTTTCT+TGG + chr8_3:67990504-67990523 None:intergenic 30.0%
! ATTTGCTTTCTCTTGTTTGT+TGG - chr8_3:67990591-67990610 Msa1304810:intron 30.0%
AGAATCATGGAACAATTTAC+TGG + chr8_3:67990637-67990656 None:intergenic 30.0%
CCAATAGCATTATATTGAGT+TGG + chr8_3:67990688-67990707 None:intergenic 30.0%
CCAACTCAATATAATGCTAT+TGG - chr8_3:67990685-67990704 Msa1304810:intron 30.0%
!!! ATTTTAACTACTAGTCGCAT+TGG - chr8_3:67990790-67990809 Msa1304810:intron 30.0%
TCATGCTATGTTTATGATGA+TGG - chr8_3:67990820-67990839 Msa1304810:intron 30.0%
!! GTTTATGATGATGGAATTGA+AGG - chr8_3:67990829-67990848 Msa1304810:intron 30.0%
TGTTTCCAATTCCAACATAA+GGG + chr8_3:67991105-67991124 None:intergenic 30.0%
ATGTTTCCAATTCCAACATA+AGG + chr8_3:67991106-67991125 None:intergenic 30.0%
AGTTTGATGAGTTCAAAGTT+AGG - chr8_3:67991194-67991213 Msa1304810:intron 30.0%
! GATCACTATTAGCTTGAATA+GGG - chr8_3:67991297-67991316 Msa1304810:intron 30.0%
!! TTTTTAGAAGAAAAAGTGGG+AGG - chr8_3:67991387-67991406 Msa1304810:intron 30.0%
AAAGACGACATATACTTGAA+GGG + chr8_3:67991481-67991500 None:intergenic 30.0%
TAAAGACGACATATACTTGA+AGG + chr8_3:67991482-67991501 None:intergenic 30.0%
TAATGTTTACAACTCAACAC+TGG + chr8_3:67991578-67991597 None:intergenic 30.0%
! GCCTCCTATTTTATTGAAAA+TGG + chr8_3:67991622-67991641 None:intergenic 30.0%
AATTATAACCGTGACAAGAA+TGG - chr8_3:67991773-67991792 Msa1304810:CDS 30.0%
!!! TGGCTTGGTTTTGTGTTTAT+GGG + chr8_3:67988196-67988215 None:intergenic 35.0%
!!! ATGGCTTGGTTTTGTGTTTA+TGG + chr8_3:67988197-67988216 None:intergenic 35.0%
! TACGATGAAAAGCGTAAACT+CGG - chr8_3:67988380-67988399 Msa1304810:CDS 35.0%
! GATTAACGATTTGAGACAGA+GGG + chr8_3:67988465-67988484 None:intergenic 35.0%
CTCAGAAGAAAGACATTCAA+AGG - chr8_3:67988549-67988568 Msa1304810:intron 35.0%
! TTGTTACTTAGGTGCTTGTT+TGG - chr8_3:67988742-67988761 Msa1304810:intron 35.0%
!!! CAGTTTTGTTACAAGTGCTT+AGG + chr8_3:67988998-67989017 None:intergenic 35.0%
ACAACTTATGGACATGTCAT+TGG - chr8_3:67989118-67989137 Msa1304810:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr8_3:67989197-67989216 Msa1304810:intron 35.0%
!! ATGAATTTCATGTTTCTGGG+TGG + chr8_3:67989249-67989268 None:intergenic 35.0%
CTCATGCCAATTATTGAGAT+TGG + chr8_3:67989320-67989339 None:intergenic 35.0%
! TGATGATGAATTGGAAAAGC+TGG - chr8_3:67989368-67989387 Msa1304810:intron 35.0%
TTCGAGATGGAGAAACTATT+AGG + chr8_3:67989531-67989550 None:intergenic 35.0%
ATTGATCTCATGTTTCGAGA+TGG + chr8_3:67989544-67989563 None:intergenic 35.0%
TCAAATCTCCATTGTTTGCA+TGG - chr8_3:67989603-67989622 Msa1304810:intron 35.0%
CTCTGTTGAATTAGAAAAGC+TGG - chr8_3:67989652-67989671 Msa1304810:intron 35.0%
! CTTTTATGGTTTCCATGTTC+TGG + chr8_3:67989758-67989777 None:intergenic 35.0%
CAGAACATGGAAACCATAAA+AGG - chr8_3:67989756-67989775 Msa1304810:intron 35.0%
GAAGATTCTCAAATAGTGCT+GGG - chr8_3:67989778-67989797 Msa1304810:intron 35.0%
ACACTGTCCAAGAATATTTC+TGG - chr8_3:67989822-67989841 Msa1304810:intron 35.0%
! TTTATTAAGTGGGCTCTATC+AGG + chr8_3:67989942-67989961 None:intergenic 35.0%
CAGAGCAACTCTTTATTAAG+TGG + chr8_3:67989953-67989972 None:intergenic 35.0%
TTAATAAAGAGTTGCTCTGC+TGG - chr8_3:67989954-67989973 Msa1304810:intron 35.0%
ACCAATGCAAAGACAAAATG+TGG + chr8_3:67990132-67990151 None:intergenic 35.0%
AAGTATGATTCAGGATTCCA+GGG - chr8_3:67990165-67990184 Msa1304810:intron 35.0%
ATGTATAGGTTCCCTTCTAT+GGG + chr8_3:67990206-67990225 None:intergenic 35.0%
AACCTATACATCAACAAAGC+TGG - chr8_3:67990215-67990234 Msa1304810:intron 35.0%
TAGAAAGGCAATTCCTTCTT+AGG - chr8_3:67990334-67990353 Msa1304810:intron 35.0%
AGAAAGGCAATTCCTTCTTA+GGG - chr8_3:67990335-67990354 Msa1304810:intron 35.0%
GAGACAAATATATCTATGCC+TGG - chr8_3:67990367-67990386 Msa1304810:intron 35.0%
! ATGGTTTAGTGGACATAGTT+TGG - chr8_3:67990462-67990481 Msa1304810:intron 35.0%
! TGGTTTAGTGGACATAGTTT+GGG - chr8_3:67990463-67990482 Msa1304810:intron 35.0%
ATCAAAATACTGATGCAGTC+TGG + chr8_3:67990557-67990576 None:intergenic 35.0%
AACAATTTACTGGACAGAGT+TGG + chr8_3:67990627-67990646 None:intergenic 35.0%
AAAAGAGGTGGTTCTTTCTT+AGG + chr8_3:67990748-67990767 None:intergenic 35.0%
ACTTCTCTCATACCAATTGA+TGG + chr8_3:67991007-67991026 None:intergenic 35.0%
CTACAATCCTTGACAAAGTT+CGG + chr8_3:67991160-67991179 None:intergenic 35.0%
AGTTCAAAGTTAGGATCAGT+AGG - chr8_3:67991203-67991222 Msa1304810:intron 35.0%
TTTCTTAAATAGAGAGAGCG+TGG - chr8_3:67991255-67991274 Msa1304810:intron 35.0%
! GGATCACTATTAGCTTGAAT+AGG - chr8_3:67991296-67991315 Msa1304810:intron 35.0%
! AAGAAAAAGTGGGAGGTTTT+TGG - chr8_3:67991394-67991413 Msa1304810:intron 35.0%
ACTCCTTCACAAATTCTAGT+GGG - chr8_3:67991440-67991459 Msa1304810:intron 35.0%
AAGACGACATATACTTGAAG+GGG + chr8_3:67991480-67991499 None:intergenic 35.0%
GCATTTGATCAGCAAAATCA+TGG - chr8_3:67991725-67991744 Msa1304810:CDS 35.0%
AAATGCCTTCATTGTCCTAA+GGG + chr8_3:67991846-67991865 None:intergenic 35.0%
AAAATGCCTTCATTGTCCTA+AGG + chr8_3:67991847-67991866 None:intergenic 35.0%
!!! TTAGGACAATGAAGGCATTT+TGG - chr8_3:67991846-67991865 Msa1304810:five_prime_UTR 35.0%
TCTACTTTAACAGAAGCTTC+TGG + chr8_3:67991887-67991906 None:intergenic 35.0%
! TTTTGCAGAAAGAGGGGTTA+GGG + chr8_3:67988293-67988312 None:intergenic 40.0%
! ATTTTGCAGAAAGAGGGGTT+AGG + chr8_3:67988294-67988313 None:intergenic 40.0%
! TCGGTGATTTTGCAGAAAGA+GGG + chr8_3:67988300-67988319 None:intergenic 40.0%
! ATCGGTGATTTTGCAGAAAG+AGG + chr8_3:67988301-67988320 None:intergenic 40.0%
! GAGGCATTTCTGTGATAGAT+CGG + chr8_3:67988319-67988338 None:intergenic 40.0%
! GAGTTTACGCTTTTCATCGT+AGG + chr8_3:67988381-67988400 None:intergenic 40.0%
! GAAAAGCGTAAACTCGGTTA+TGG - chr8_3:67988386-67988405 Msa1304810:CDS 40.0%
! CGATTAACGATTTGAGACAG+AGG + chr8_3:67988466-67988485 None:intergenic 40.0%
! TGCAGAAAAGGTGACCTTTT+TGG + chr8_3:67988502-67988521 None:intergenic 40.0%
GAATGCACTCTTTGCAGAAA+AGG + chr8_3:67988514-67988533 None:intergenic 40.0%
TTTCTGGGTGGAGAAACTAT+TGG + chr8_3:67989237-67989256 None:intergenic 40.0%
TATTGAGATTGGAGCTCCAA+CGG + chr8_3:67989309-67989328 None:intergenic 40.0%
GGAGCTCCAATCTCAATAAT+TGG - chr8_3:67989311-67989330 Msa1304810:intron 40.0%
! GCTTAGTATCTAGAACTGGA+AGG - chr8_3:67989397-67989416 Msa1304810:intron 40.0%
GAGATGGAGAAACTATTAGG+TGG + chr8_3:67989528-67989547 None:intergenic 40.0%
! TGTATTGGCCATGCAAACAA+TGG + chr8_3:67989614-67989633 None:intergenic 40.0%
!! TGTTCTGGTTTCAGAGTTTG+AGG + chr8_3:67989743-67989762 None:intergenic 40.0%
!! CAAACTCTGAAACCAGAACA+TGG - chr8_3:67989743-67989762 Msa1304810:intron 40.0%
GGAAGATTCTCAAATAGTGC+TGG - chr8_3:67989777-67989796 Msa1304810:intron 40.0%
AATGTGGCCAAACTTTGTCA+AGG + chr8_3:67990116-67990135 None:intergenic 40.0%
! GCCACATTTTGTCTTTGCAT+TGG - chr8_3:67990128-67990147 Msa1304810:intron 40.0%
GAAGTATGATTCAGGATTCC+AGG - chr8_3:67990164-67990183 Msa1304810:intron 40.0%
TAGACCATGTTTCCCATAGA+AGG - chr8_3:67990191-67990210 Msa1304810:intron 40.0%
AGACCATGTTTCCCATAGAA+GGG - chr8_3:67990192-67990211 Msa1304810:intron 40.0%
GATGTATAGGTTCCCTTCTA+TGG + chr8_3:67990207-67990226 None:intergenic 40.0%
!! TGCCAGCTTTGTTGATGTAT+AGG + chr8_3:67990220-67990239 None:intergenic 40.0%
GCACTGTCTTCTAACATTTG+AGG + chr8_3:67990256-67990275 None:intergenic 40.0%
ACTCGGAAGTCTAATATTCC+AGG + chr8_3:67990388-67990407 None:intergenic 40.0%
TTCTTTCTTAGGATCAGCAG+TGG + chr8_3:67990737-67990756 None:intergenic 40.0%
ATACTGTTTGCAGCGAAAAG+AGG + chr8_3:67990763-67990782 None:intergenic 40.0%
TAACTACTAGTCGCATTGGA+AGG - chr8_3:67990794-67990813 Msa1304810:intron 40.0%
AATCGTGTACCTTGATCAGA+TGG - chr8_3:67990913-67990932 Msa1304810:intron 40.0%
CAATTGGTATGAGAGAAGTC+AGG - chr8_3:67991008-67991027 Msa1304810:intron 40.0%
TTCCAGCTTTGCTGATGTAT+GGG - chr8_3:67991077-67991096 Msa1304810:intron 40.0%
ATGTATGGGTTCCCTTATGT+TGG - chr8_3:67991091-67991110 Msa1304810:intron 40.0%
CTTTGTCAAGGATTGTAGAC+TGG - chr8_3:67991162-67991181 Msa1304810:intron 40.0%
CACTCCTTCACAAATTCTAG+TGG - chr8_3:67991439-67991458 Msa1304810:intron 40.0%
!! TTTTGAGAGGGACTTAACAC+TGG + chr8_3:67991537-67991556 None:intergenic 40.0%
GCAGAAGCAAGAAAAAGAAG+AGG - chr8_3:67991661-67991680 Msa1304810:CDS 40.0%
CATGGAAACCATTCTTGTCA+CGG + chr8_3:67991784-67991803 None:intergenic 40.0%
GTGACAAGAATGGTTTCCAT+GGG - chr8_3:67991783-67991802 Msa1304810:CDS 40.0%
TGACAAGAATGGTTTCCATG+GGG - chr8_3:67991784-67991803 Msa1304810:CDS 40.0%
!! ATTTGAGTTCTAGGTCGTCG+CGG + chr8_3:67988236-67988255 None:intergenic 45.0%
! CGGTGATTTTGCAGAAAGAG+GGG + chr8_3:67988299-67988318 None:intergenic 45.0%
TTGTTCTTCGAATGTCGCTG+AGG + chr8_3:67988338-67988357 None:intergenic 45.0%
!! ACAAGCATCGAAGGGTTTGA+TGG + chr8_3:67988441-67988460 None:intergenic 45.0%
GATCCTATGAGCTGCCAAAA+AGG - chr8_3:67988485-67988504 Msa1304810:intron 45.0%
!! TGACCTTTTTGGCAGCTCAT+AGG + chr8_3:67988491-67988510 None:intergenic 45.0%
CAAGTGCTTAGGGTCTGTTT+GGG + chr8_3:67988987-67989006 None:intergenic 45.0%
ACAAGTGCTTAGGGTCTGTT+TGG + chr8_3:67988988-67989007 None:intergenic 45.0%
TACTAAGGGCCTGTTTGGAT+TGG + chr8_3:67989209-67989228 None:intergenic 45.0%
AGGAATACTAAGGGCCTGTT+TGG + chr8_3:67989214-67989233 None:intergenic 45.0%
! GCAGGCTTAGTATCTAGAAC+TGG - chr8_3:67989393-67989412 Msa1304810:intron 45.0%
TGTGACACTGTTCGAGAGAA+GGG + chr8_3:67989449-67989468 None:intergenic 45.0%
TTGTGACACTGTTCGAGAGA+AGG + chr8_3:67989450-67989469 None:intergenic 45.0%
CTGGTTTCAGAGTTTGAGGA+AGG + chr8_3:67989739-67989758 None:intergenic 45.0%
AAAGCCACCACGTGTTGAAA+TGG + chr8_3:67989898-67989917 None:intergenic 45.0%
ATTTCAACACGTGGTGGCTT+TGG - chr8_3:67989897-67989916 Msa1304810:intron 45.0%
TTTCAACACGTGGTGGCTTT+GGG - chr8_3:67989898-67989917 Msa1304810:intron 45.0%
TGACACCATCAACCACATGT+GGG - chr8_3:67989982-67990001 Msa1304810:intron 45.0%
CAGTGATCCAAACCAAAGGT+GGG + chr8_3:67990034-67990053 None:intergenic 45.0%
CTAGCAGTGATCCAAACCAA+AGG + chr8_3:67990038-67990057 None:intergenic 45.0%
CTGCGATCCTTGACAAAGTT+TGG - chr8_3:67990106-67990125 Msa1304810:intron 45.0%
GTTCCCTTCTATGGGAAACA+TGG + chr8_3:67990198-67990217 None:intergenic 45.0%
CAATTCCTTCTTAGGGACAG+TGG - chr8_3:67990342-67990361 Msa1304810:intron 45.0%
TACTGATGCAGTCTGGCTAT+GGG + chr8_3:67990550-67990569 None:intergenic 45.0%
ATACTGATGCAGTCTGGCTA+TGG + chr8_3:67990551-67990570 None:intergenic 45.0%
AAACGTGTGCCATCTGATCA+AGG + chr8_3:67990925-67990944 None:intergenic 45.0%
CTTCCAGCTTTGCTGATGTA+TGG - chr8_3:67991076-67991095 Msa1304810:intron 45.0%
AACCCATACATCAGCAAAGC+TGG + chr8_3:67991082-67991101 None:intergenic 45.0%
GGGTTCCCTTATGTTGGAAT+TGG - chr8_3:67991097-67991116 Msa1304810:intron 45.0%
ATAGTGATCCAGACCACAAG+TGG + chr8_3:67991286-67991305 None:intergenic 45.0%
!!! AGTGGGAGGTTTTTGGTTCA+TGG - chr8_3:67991401-67991420 Msa1304810:intron 45.0%
CCACCCACTAGAATTTGTGA+AGG + chr8_3:67991446-67991465 None:intergenic 45.0%
CCTTCACAAATTCTAGTGGG+TGG - chr8_3:67991443-67991462 Msa1304810:intron 45.0%
CGTGACAAGAATGGTTTCCA+TGG - chr8_3:67991782-67991801 Msa1304810:CDS 45.0%
TGTGAAGGTCACTTCCTATG+AGG - chr8_3:67991814-67991833 Msa1304810:five_prime_UTR 45.0%
AGAAGCCCTTAGGACAATGA+AGG - chr8_3:67991838-67991857 Msa1304810:five_prime_UTR 45.0%
TTCTACAAGCACCATCTGTC+CGG - chr8_3:67991913-67991932 Msa1304810:five_prime_UTR 45.0%
CAAAACCAAGCCATCCTCTG+TGG - chr8_3:67988203-67988222 Msa1304810:CDS 50.0%
ACTCGGTTATGGAACGCAGA+AGG - chr8_3:67988397-67988416 Msa1304810:CDS 50.0%
GTTATGGAACGCAGAAGGAG+AGG - chr8_3:67988402-67988421 Msa1304810:CDS 50.0%
!! CAGAGGGAACAAGCATCGAA+GGG + chr8_3:67988449-67988468 None:intergenic 50.0%
!! ACAGAGGGAACAAGCATCGA+AGG + chr8_3:67988450-67988469 None:intergenic 50.0%
TGCTTAGGGTCTGTTTGGGT+TGG + chr8_3:67988983-67989002 None:intergenic 50.0%
CTGGGTGGAGAAACTATTGG+AGG + chr8_3:67989234-67989253 None:intergenic 50.0%
ATCTGTGCCAGTCTATCCGT+TGG - chr8_3:67989290-67989309 Msa1304810:intron 50.0%
GAATTGGAAAAGCTGGCAGC+AGG - chr8_3:67989375-67989394 Msa1304810:intron 50.0%
! CTCAAATAGTGCTGGGCTGT+TGG - chr8_3:67989785-67989804 Msa1304810:intron 50.0%
!! GGATTGGCCATTTCAACACG+TGG - chr8_3:67989888-67989907 Msa1304810:intron 50.0%
TTGGCCATTTCAACACGTGG+TGG - chr8_3:67989891-67989910 Msa1304810:intron 50.0%
! TTCAACACGTGGTGGCTTTG+GGG - chr8_3:67989899-67989918 Msa1304810:intron 50.0%
GTGACACCATCAACCACATG+TGG - chr8_3:67989981-67990000 Msa1304810:intron 50.0%
GCTAACCCACATGTGGTTGA+TGG + chr8_3:67989990-67990009 None:intergenic 50.0%
ACTGGATGCTAACCCACATG+TGG + chr8_3:67989997-67990016 None:intergenic 50.0%
!! ACATGTGGGTTAGCATCCAG+TGG - chr8_3:67989996-67990015 Msa1304810:intron 50.0%
!! CATGTGGGTTAGCATCCAGT+GGG - chr8_3:67989997-67990016 Msa1304810:intron 50.0%
TGGTCAACCCACCTTTGGTT+TGG - chr8_3:67990024-67990043 Msa1304810:intron 50.0%
GCAGTGATCCAAACCAAAGG+TGG + chr8_3:67990035-67990054 None:intergenic 50.0%
CTTTGTCAAGGATCGCAGAC+AGG + chr8_3:67990104-67990123 None:intergenic 50.0%
TTCCTTCTTAGGGACAGTGG+TGG - chr8_3:67990345-67990364 Msa1304810:intron 50.0%
ACTGATGCAGTCTGGCTATG+GGG + chr8_3:67990549-67990568 None:intergenic 50.0%
CTGTTTGCAGCGAAAAGAGG+TGG + chr8_3:67990760-67990779 None:intergenic 50.0%
GGTATGAGAGAAGTCAGGAG+CGG - chr8_3:67991013-67991032 Msa1304810:intron 50.0%
!! AGGGGCACTTCTAACTTTCG+AGG - chr8_3:67991041-67991060 Msa1304810:intron 50.0%
AGTGCAGCCGAACTTTGTCA+AGG - chr8_3:67991150-67991169 Msa1304810:intron 50.0%
TGGTCAATCCACTTGTGGTC+TGG - chr8_3:67991275-67991294 Msa1304810:intron 50.0%
!!! GGGAGGTTTTTGGTTCATGG+TGG - chr8_3:67991404-67991423 Msa1304810:intron 50.0%
CCTAAGGGCTTCTTCCTCAT+AGG + chr8_3:67991831-67991850 None:intergenic 50.0%
CCTATGAGGAAGAAGCCCTT+AGG - chr8_3:67991828-67991847 Msa1304810:five_prime_UTR 50.0%
GAAGCTTCTGGTGTAGCAGA+AGG + chr8_3:67991875-67991894 None:intergenic 50.0%
GGACAGATGGTGCTTGTAGA+AGG + chr8_3:67991914-67991933 None:intergenic 50.0%
AACCAAGCCATCCTCTGTGG+CGG - chr8_3:67988206-67988225 Msa1304810:CDS 55.0%
TGGAACGCAGAAGGAGAGGT+TGG - chr8_3:67988406-67988425 Msa1304810:CDS 55.0%
GGAACGCAGAAGGAGAGGTT+GGG - chr8_3:67988407-67988426 Msa1304810:CDS 55.0%
GAACGCAGAAGGAGAGGTTG+GGG - chr8_3:67988408-67988427 Msa1304810:CDS 55.0%
TGGAGCTCCAACGGATAGAC+TGG + chr8_3:67989300-67989319 None:intergenic 55.0%
!! TCAACACGTGGTGGCTTTGG+GGG - chr8_3:67989900-67989919 Msa1304810:intron 55.0%
GTTAGCATCCAGTGGGAGCA+TGG - chr8_3:67990004-67990023 Msa1304810:intron 55.0%
GAGCATGGTCAACCCACCTT+TGG - chr8_3:67990019-67990038 Msa1304810:intron 55.0%
! GGAAACATGGTCTAGAGCCC+TGG + chr8_3:67990185-67990204 None:intergenic 55.0%
CTCCACCACTGTCCCTAAGA+AGG + chr8_3:67990350-67990369 None:intergenic 55.0%
! CAGTCTGGCTATGGGGCATT+CGG + chr8_3:67990542-67990561 None:intergenic 55.0%
AGAAGTCAGGAGCGGAGTAG+AGG - chr8_3:67991021-67991040 Msa1304810:intron 55.0%
GAAGTCAGGAGCGGAGTAGA+GGG - chr8_3:67991022-67991041 Msa1304810:intron 55.0%
AAGTCAGGAGCGGAGTAGAG+GGG - chr8_3:67991023-67991042 Msa1304810:intron 55.0%
!!! CGGCTGCACTCTGTTTTTGC+AGG + chr8_3:67991140-67991159 None:intergenic 55.0%
GAGCGTGGTCAATCCACTTG+TGG - chr8_3:67991270-67991289 Msa1304810:intron 55.0%
CCTTCACACTGTTTGCCCCA+TGG + chr8_3:67991802-67991821 None:intergenic 55.0%
CCATGGGGCAAACAGTGTGA+AGG - chr8_3:67991799-67991818 Msa1304810:exon 55.0%
ACAAGCACCATCTGTCCGGA+AGG - chr8_3:67991917-67991936 Msa1304810:five_prime_UTR 55.0%
AACCGCCACAGAGGATGGCT+TGG + chr8_3:67988211-67988230 None:intergenic 60.0%
CGGTAAACCGCCACAGAGGA+TGG + chr8_3:67988216-67988235 None:intergenic 60.0%
GCAGAAGGAGAGGTTGGGGA+AGG - chr8_3:67988412-67988431 Msa1304810:CDS 60.0%
! TGGGTTGACCATGCTCCCAC+TGG + chr8_3:67990015-67990034 None:intergenic 60.0%
CTGGACAGAGTTGGCGCAAC+TGG + chr8_3:67990618-67990637 None:intergenic 60.0%
CACCATCTGTCCGGAAGGCA+AGG - chr8_3:67991922-67991941 Msa1304810:five_prime_UTR 60.0%
CTCCTTGCCTTCCGGACAGA+TGG + chr8_3:67991927-67991946 None:intergenic 60.0%
GTCGCGGTAAACCGCCACAG+AGG + chr8_3:67988220-67988239 None:intergenic 65.0%
!! ACACGTGGTGGCTTTGGGGG+TGG - chr8_3:67989903-67989922 Msa1304810:intron 65.0%
!! CGTGGTGGCTTTGGGGGTGG+TGG - chr8_3:67989906-67989925 Msa1304810:intron 70.0%
!! GGTGGCTTTGGGGGTGGTGG+TGG - chr8_3:67989909-67989928 Msa1304810:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 67988186 67991952 67988186 ID=Msa1304810;Name=Msa1304810
chr8_3 mRNA 67988186 67991952 67988186 ID=Msa1304810-mRNA-1;Parent=Msa1304810;Name=Msa1304810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=146|1|0.5|1|0|0.5|2|0|185
chr8_3 exon 67988186 67988501 67988186 ID=Msa1304810-mRNA-1:exon:21012;Parent=Msa1304810-mRNA-1
chr8_3 exon 67991568 67991952 67991568 ID=Msa1304810-mRNA-1:exon:21011;Parent=Msa1304810-mRNA-1
chr8_3 five_prime_UTR 67991807 67991952 67991807 ID=Msa1304810-mRNA-1:five_prime_utr;Parent=Msa1304810-mRNA-1
chr8_3 CDS 67991568 67991806 67991568 ID=Msa1304810-mRNA-1:cds;Parent=Msa1304810-mRNA-1
chr8_3 CDS 67988186 67988501 67988186 ID=Msa1304810-mRNA-1:cds;Parent=Msa1304810-mRNA-1
Gene Sequence

>Msa1304810

ATGCCTCAGCGACATTCGAAGAACAACAACGATCTCGCGTTCTTCACCTACGATGAAAAGCGTAAACTCGGTTATGGAACGCAGAAGGAGAGGTTGGGGAAGGATTCCATCAAACCCTTCGATGCTTGTTCCCTCTGTCTCAAATCGTTAATCGATCCTATGAGCTGCCAAAAAGGTCACCTTTTCTGCAAAGAGTGCATTCTCGAATGCTTATTATCTCAGAAGAAAGACATTCAAAGGAGGCTTGTTGCACATTCTGCTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAAGAAAAATTAATGTTGCAGAAGGCTAAAGAGCTTGATGCATTTGATCAGCAAAATCATGGTGCTGTACCACAATACAGTGATAGAAATTATAACCGTGACAAGAATGGTTTCCATGGGGCAAACAGTGTGAAGGTCACTTCCTATGAGGAAGAAGCCCTTAGGACAATGAAGGCATTTTGGCTGCCTTCTGCTACACCAGAAGCTTCTGTTAAAGTAGAAGCTCCTTCTACAAGCACCATCTGTCCGGAAGGCAAGGAGAATCTA

Protein sequence

>Msa1304810

MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKSLIDPMSCQKGHLFCKECILECLLSQKKDIQRRLVAHSAQQKQEKEEEEEKLMLQKAKELDAFDQQNHGAVPQYSDRNYNRDKNGFHGANSVKVTSYEEEALRTMKAFWLPSATPEASVKVEAPSTSTICPEGKENL