AlfalfaGEDB | Msa1102560

M. sativa cultivar zhongmu-4 / Msa1102560

KEGG: K10875
GO: -
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102560	KEH22453.1	92.974	1039	72	1	277	1314	265	1303	0.0	1959

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102560	sp\|F4I8S3\|CLSY3_ARATH	45.255	822	378	23	536	1312	611	1405	0.0	644

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102560	A0A072U020	92.974	1039	72	1	277	1314	265	1303	0.0	1959

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TFs/TRs:

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Gene ID	Type	Classification
Msa1102560	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0057610	Msa1102560	0.802936	4.427537e-49	-8.615850e-47
Msa0057710	Msa1102560	0.807155	5.801823e-50	-8.615850e-47
Msa0073670	Msa1102560	0.835003	2.160825e-56	-8.615850e-47
Msa0094580	Msa1102560	0.806006	1.014344e-49	-8.615850e-47
Msa0167480	Msa1102560	0.808351	3.232735e-50	-8.615850e-47
Msa0226460	Msa1102560	0.812939	3.293091e-51	-8.615850e-47
Msa0296250	Msa1102560	0.807229	5.597080e-50	-8.615850e-47
Msa0331700	Msa1102560	0.800724	1.260280e-48	-8.615850e-47
Msa0443390	Msa1102560	0.808947	2.411134e-50	-8.615850e-47
Msa0581070	Msa1102560	0.805338	1.400661e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102560	MtrunA17_Chr7g0232971	92.974	1039	72	1	277	1314	265	1303	0.0	1959
Msa1102560	MtrunA17_Chr7g0233021	56.431	1345	447	28	1	1313	1	1238	0.0	1248
Msa1102560	MtrunA17_Chr7g0225791	62.400	1000	317	22	334	1309	326	1290	0.0	1133
Msa1102560	MtrunA17_Chr7g0233031	60.078	1032	319	19	330	1308	256	1247	0.0	1115
Msa1102560	MtrunA17_Chr4g0047081	59.886	1057	334	20	281	1309	246	1240	0.0	1107
Msa1102560	MtrunA17_Chr4g0047081	55.556	99	21	4	1	91	1	84	1.58e-15	82.4
Msa1102560	MtrunA17_Chr7g0232991	74.363	667	143	7	666	1313	9	666	0.0	956
Msa1102560	MtrunA17_Chr7g0233001	67.228	534	160	7	782	1309	1	525	0.0	699
Msa1102560	MtrunA17_Chr1g0191141	35.724	725	378	23	610	1288	400	1082	2.60e-111	377
Msa1102560	MtrunA17_Chr7g0224051	33.156	751	442	20	596	1309	389	1116	3.75e-103	355

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102560	AT1G05490.1	45.255	822	378	23	536	1312	611	1405	0.0	644
Msa1102560	AT3G24340.1	48.077	728	321	16	598	1312	448	1131	0.0	629
Msa1102560	AT3G42670.2	33.014	730	439	17	603	1303	541	1249	5.79e-98	342
Msa1102560	AT3G42670.3	33.014	730	439	17	603	1303	541	1249	5.79e-98	342
Msa1102560	AT3G42670.1	33.014	730	439	17	603	1303	541	1249	5.79e-98	342
Msa1102560	AT3G42670.4	32.789	735	436	18	603	1303	541	1251	8.37e-98	342
Msa1102560	AT5G20420.1	33.008	718	425	19	603	1288	547	1240	1.44e-94	332
Msa1102560	AT2G16390.2	29.688	640	370	15	642	1263	273	850	1.68e-77	276
Msa1102560	AT2G16390.1	29.688	640	370	15	642	1263	270	847	4.57e-77	275
Msa1102560	AT2G21450.2	30.680	691	383	23	603	1263	156	780	6.42e-77	273

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Find 285 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGGTCCGCGCAGGGA+GGG	0.599737	7_3:-35758599	Msa1102560:CDS
AAAACGGAGAAAGAGTGTTT+TGG	0.361875	7_3:-35761418	Msa1102560:CDS
AAAATACTTCGATGTGGTGG+TGG	0.573493	7_3:-35760965	Msa1102560:CDS
AAAATGACGGAGAATAAAGG+GGG	0.694704	7_3:-35760037	Msa1102560:CDS
AAACGCGAATCAAAGAGTGT+AGG	0.639314	7_3:-35760331	Msa1102560:CDS
AAAGAGAAAACATGCAAATG+TGG	0.550930	7_3:-35758204	Msa1102560:CDS
AAAGCACAGGTTATCTGAAC+TGG	0.430724	7_3:-35757109	Msa1102560:CDS
AAAGTTAACAGCGCAACTCT+TGG	0.459672	7_3:+35757053	None:intergenic
AAATAATGAGGAGAAGGAGA+AGG	0.573968	7_3:-35760647	Msa1102560:CDS
AAATTTAGGGACAAATGACA+TGG	0.586648	7_3:-35759449	Msa1102560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCATTCTTAGGAATCAAAAA+AGG	+	chr7_3:35757134-35757153	None:intergenic	30.0%
TGATAAATATGAAGAAGGGT+CGG	-	chr7_3:35757178-35757197	Msa1102560:CDS	30.0%
ACATTATTGCAAACAGAAGA+AGG	+	chr7_3:35758028-35758047	None:intergenic	30.0%
GTAAACTTTAGCATCATCTT+TGG	+	chr7_3:35758299-35758318	None:intergenic	30.0%
AATAAAGGGGGAGATTATAA+AGG	-	chr7_3:35758457-35758476	Msa1102560:CDS	30.0%
GAGATTATAAAGGCAGATTT+AGG	-	chr7_3:35758467-35758486	Msa1102560:CDS	30.0%
AAGGAATCTATGGATAACAA+TGG	-	chr7_3:35758508-35758527	Msa1102560:CDS	30.0%
CAACAAGAATACAATGAAGA+AGG	-	chr7_3:35758597-35758616	Msa1102560:CDS	30.0%
AAATTTAGGGACAAATGACA+TGG	-	chr7_3:35759033-35759052	Msa1102560:intron	30.0%
AATTTAGGGACAAATGACAT+GGG	-	chr7_3:35759034-35759053	Msa1102560:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	35756948	35761556	35756948	ID=Msa1102560;Name=Msa1102560
chr7_3	mRNA	35756948	35761556	35756948	ID=Msa1102560-mRNA-1;Parent=Msa1102560;Name=Msa1102560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0\|1\|1\|1\|3\|0\|1314
chr7_3	exon	35759679	35761556	35759679	ID=Msa1102560-mRNA-1:exon:7495;Parent=Msa1102560-mRNA-1
chr7_3	exon	35759336	35759476	35759336	ID=Msa1102560-mRNA-1:exon:7494;Parent=Msa1102560-mRNA-1
chr7_3	exon	35756948	35758873	35756948	ID=Msa1102560-mRNA-1:exon:7493;Parent=Msa1102560-mRNA-1
chr7_3	CDS	35759679	35761556	35759679	ID=Msa1102560-mRNA-1:cds;Parent=Msa1102560-mRNA-1
chr7_3	CDS	35759336	35759476	35759336	ID=Msa1102560-mRNA-1:cds;Parent=Msa1102560-mRNA-1
chr7_3	CDS	35756948	35758873	35756948	ID=Msa1102560-mRNA-1:cds;Parent=Msa1102560-mRNA-1

Gene Sequence

>Msa1102560

ATGGCTGGTGTTTCTAGTAGAACTCGTAGCAAACATGTTTTTTTACTTGGTGTTTCGAGCAGAACTCGTAGCAAGAATGTTCCGTTGTTTGGTTCTATTCCACTTGTTGGTTCATCAAAACGGAGAAAGAGTGTTTTGGACTCTGTTTCTGGTTCTAAGAAAAGGAAGGTAGAAGAAAAAGAACCTTTTTTGATTCCTAAGAATGGTGAGGTTATTTCCATTGATGATGATGATAAATATGAAGAAGGGTCGGTGCAATGTGATGAGAAGATGTTTGAAGGTTGTGTTGATGTTGAAAAAGAAGTACAGACTGAGGAAAGTGGAGGAGGAAGTGATGAGATTGATGCTAAGGATCGAAGCATTGTTGATGATGATGTAGTTGTAGATGATTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGGTGATGATCATGATGATGATGAAAGTGAAGAAAATGAGACTAGTGATGAGGATTTTATAGTTGATGAGGTGGAGGAGGAGGAGGAGGAGGATGAGAAGGAGAAGAAAAAAGCTGGGCGAAAATACTTCGATGTGGTGGTGGTGAGGAGGCGGAGAGAGGCGAACGATAGACACAGTGAATCCTCTCATGTTGATGATGATGGTGAGGAGGAGGAGAAGAAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGAATGAGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGGGGAGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGAAGGAGAAGGAGAAGGAGGATTTGAGTAAGATTTGGGAAGAATGTTCCAATGGGTTATTGGAGATGGTGAGAGAGGTGGAGAATCAAAAAAGTGTAATTTCTGAGACAAATAATGAGGAGAAGGAGAAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGAAGGAGGAGGATTTGAGTAAGATTTGGGAAGAATGTTCCAATGGGTTATTGGAGATGGTGAGAGAGGTGGAGGATAAAAAAAGTGTAATTTCTGATACGAATAATGAGGAGGTAAACACTGAAATTAGTCCTTCTTCTGTTTGCAATAATGTATCAGAACATGCAGAACATTCCAGTTTAATAACCTTTGAGAAAAAGGGTTATTTTGATCCAGTGAATGGTTGTTCTTCTTCCACCCGGAATGGAGAATCGAAGAAACGCGAATCAAAGAGTGTAGGCGTAAAAATGCAAAATGTCAGTAACGAATATGATTTTCAATTTGCTGCTGATCAACCTATAAGTTTTGATCATTCTAAGGTTCACAAGGGTGAGTCAAATAATGCCAATGTCAAAGCAAAATCCAAAGATGATGCTAAAGTTTACGAGAATGTGAATGTGAAGGTTGGTGATTCTGATGAAGGAAAACAGAAACATGTCAAAGGTTTAGGTGTTGGAGGAGTTTCTTCCCCTCAAGCAAAACAAGAAAAGACGAGGGATTTAGATAAACCAAAAATGACGGAGAATAAAGGGGGAGATTATAAAGGCAGATTTAGGATCCGTAATGGTGAGAAGAAGGAATCTATGGATAACAATGGTTTGACTAAAATGTTTGTGCCGAAAGAGCTGCGTTTAGCTAAACTCCTTGCAGAATGCTTTTGGGGCAACAAGAATACAATGAAGAAGGATTCAATTGTGTTGGAGGTGAAGGATGGCAACGATGATTGGCGAGATAGAGATACACGGTCACCGCCGGTTTGTGTTGAGACACCTCCACAGATATGGAGCCTTAAAAAGGTGGAAGAAGTGCAAAAGACCAAGGAGGAGGAGGAACATGAACCATTGTGGGATCAAATGGATATAGCCCTTAGAGAATCAGAAGCTGAATCGATGATTGGAAATTTAGGGACAAATGACATGGGAAATCCATCCACTCTTTGTGAACACGACACTCGTTTCGACGATCAGATTGGTGTATATTGCAGATGGTGTGGTGTGGTTGTCACTGAGATCAAATATGTCTCACAACTAGTGATGGATAGATTTCCCTCTGAATGTTCTGGAAAAAAGGCTTCCTTTGATGATTCCGTAAATGTTTCACACTTCGATAGCTCTCAGTTCAATGTTTCTGATGGTGAATCAGAGACTAATTTCTCTCATAATGAAGGCACTGTTTGGGACCTAATTCCCGATGATGTGAAAGAAACCTTGTATCCTCATCAAAAAGAAGGCTTTGAGTTCATTTGGAAAAACTTGACAGGACACATCGATCTTCACAAGTTGAGTAAAACCGGTCCGCGCAGGGAGGGTGGCTGCATTATCTCCCATGCTCCAGGAACTGGAAAGACAAGGTTGACTATAATGTTTATCATGTCATATCTGAAAGTGTTTCCTAAATGCTTGCCAGTTATTGTTGCACCTGCGAGTTTGTTACTTACTTGGGAAGACGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTGAACAATCTCAAATTATCGGGTAAGGAGCATGATGATGCTGTTGATTTTGTTAATTGGTCTAATAAGCGGCTGAGTAAGGATACAACACGGATGGTGAAACTGATTTCGTGGTACAAAGAAAAGAGCATTCTGGGAATCAGTTACAATTTGTACGAGAAGCTAGCCGGAGAAGGGAGATCCAGACGCAGGAAAAAGAGAAAACATGCAAATGTGGAGAAGAGGAAAGAAAATGGTGATATGAGAAATGCTTTACTTGAATCTCCTGGTTTGTTAGTGCTAGATGAAGGACACATACCGAGAAATGAAAGAAGTCTTATTTGGAAGGTGTTGTCGAAAATTCAAACCCGGAAGCGGATCATCCTTTCTGGAACTCCTTTCCAGAACAATTTCTTGGAACTGTACAACATTTTGAGCTTAGTGAAGCCTTCATTTCCTAACACGATACCGCATGAGCTGAAAAAGTTTTGCCTGAAGCAGGAATATAAAAAAGTATCTGAAGAATGGAGTTGGGAAGCCGATTACAACTCAACCTGTAACCCTTCTGACCATAAGATCAAACAGTTGAAATTGCTTATGGATCCCTTTGTTCATGTTCATAAAGGTGCAATCCTTCAAAAGAAGCTCCCTGGGATAAGAAATTGTAAGCTGACTTTGAAGCCGGACAGTTTGCAGAAGCAAATTCTTGACAGCATTCAAAGTCGTCAGAATGCGTTGATCTTTGAGCGTAAGCTGACAATGGCATCAATCCATCCATCTCTTTTCCTTGAATGCGATCTTTTGAAAGAAGAGGAATCTGTTGTCGACAAGGACCAGCTAGAAAAGCTTCGATTGAATCCATATGTAGGTGTGAAAACCAAATTTTTGGTTGAGTTTGCTAGACTTTGTGATGCTGTTAAAGAGAAAGTTCTTGTGTTCAGCCAATTAATCCGTCCCTTATGCTTAATCATAGACCAATTATCGCACACCTCTTTAAACTGGACAGTGGGGAAGGAAATCATCTTCATGCATGGAGAGGTTAGTCTAAAGGACAGACAATCCTTAATCCATAGCTTCAATGATGCTAACAGCCAAGCAAAGATTCTCCTTGCATCGACAAATGCTTGTTCCGAGGGAATTAGCTTAGTCGGAGCATCAAGGGTTGTGCTTCTCGATGTTGTATGGAATCCATCAGTCGATCGACAGGCTATCAGTAGAGCATATAGGATTGGCCAGAAAAAGGTTGTATACACTTACCATCTGCTCACTGAAGGGACTGCCGAGAAAATAAAACATCGCAAACAGGCCGAAAAGCACAGGTTATCTGAACTGGTTTTTTCGTCTAAAAATGCTGATAAAGATAAGTCCAAGAGTTGCGCTGTTAACTTTGAAGATAGAATTCTTGATCAGTTGAAACAGCACGAAACGTTCAAAGACGTGTTTGTTACAGTTCAGTCGAAGGAGCGAGATTTGGTTGAGAGTTTCGGCTCTTGA

Protein sequence

>Msa1102560

MAGVSSRTRSKHVFLLGVSSRTRSKNVPLFGSIPLVGSSKRRKSVLDSVSGSKKRKVEEKEPFLIPKNGEVISIDDDDKYEEGSVQCDEKMFEGCVDVEKEVQTEESGGGSDEIDAKDRSIVDDDVVVDDSEEEEEEEEEEEEEEEEEDDGDDHDDDESEENETSDEDFIVDEVEEEEEEDEKEKKKAGRKYFDVVVVRRRREANDRHSESSHVDDDGEEEEKKEEEEKEEKEENEKEEEEKEEEEEEGEGEEEEEGEEEKEKEKEDLSKIWEECSNGLLEMVREVENQKSVISETNNEEKEKEEEEEEVEEEEEEKEEDLSKIWEECSNGLLEMVREVEDKKSVISDTNNEEVNTEISPSSVCNNVSEHAEHSSLITFEKKGYFDPVNGCSSSTRNGESKKRESKSVGVKMQNVSNEYDFQFAADQPISFDHSKVHKGESNNANVKAKSKDDAKVYENVNVKVGDSDEGKQKHVKGLGVGGVSSPQAKQEKTRDLDKPKMTENKGGDYKGRFRIRNGEKKESMDNNGLTKMFVPKELRLAKLLAECFWGNKNTMKKDSIVLEVKDGNDDWRDRDTRSPPVCVETPPQIWSLKKVEEVQKTKEEEEHEPLWDQMDIALRESEAESMIGNLGTNDMGNPSTLCEHDTRFDDQIGVYCRWCGVVVTEIKYVSQLVMDRFPSECSGKKASFDDSVNVSHFDSSQFNVSDGESETNFSHNEGTVWDLIPDDVKETLYPHQKEGFEFIWKNLTGHIDLHKLSKTGPRREGGCIISHAPGTGKTRLTIMFIMSYLKVFPKCLPVIVAPASLLLTWEDEFKKWDIGVPFHNLNNLKLSGKEHDDAVDFVNWSNKRLSKDTTRMVKLISWYKEKSILGISYNLYEKLAGEGRSRRRKKRKHANVEKRKENGDMRNALLESPGLLVLDEGHIPRNERSLIWKVLSKIQTRKRIILSGTPFQNNFLELYNILSLVKPSFPNTIPHELKKFCLKQEYKKVSEEWSWEADYNSTCNPSDHKIKQLKLLMDPFVHVHKGAILQKKLPGIRNCKLTLKPDSLQKQILDSIQSRQNALIFERKLTMASIHPSLFLECDLLKEEESVVDKDQLEKLRLNPYVGVKTKFLVEFARLCDAVKEKVLVFSQLIRPLCLIIDQLSHTSLNWTVGKEIIFMHGEVSLKDRQSLIHSFNDANSQAKILLASTNACSEGISLVGASRVVLLDVVWNPSVDRQAISRAYRIGQKKVVYTYHLLTEGTAEKIKHRKQAEKHRLSELVFSSKNADKDKSKSCAVNFEDRILDQLKQHETFKDVFVTVQSKERDLVESFGS*