AlfalfaGEDB | Msa0642880

M. sativa cultivar zhongmu-4 / Msa0642880

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010008 GO:0010087 GO:0010089 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642880	XP_003606364.1	94.426	610	34	0	1	610	1	610	0.0	1149

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642880	sp\|Q8VYY5\|NCRK_ARATH	51.545	615	230	12	1	609	1	553	0.0	580

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007970	Msa0642880	0.813846	2.081831e-51	-8.615850e-47
Msa0027260	Msa0642880	0.804162	2.465866e-49	-8.615850e-47
Msa0036130	Msa0642880	0.819550	1.094932e-52	-8.615850e-47
Msa0048180	Msa0642880	0.810318	1.223771e-50	-8.615850e-47
Msa0057710	Msa0642880	0.825425	4.720257e-54	-8.615850e-47
Msa0069330	Msa0642880	0.828967	6.696688e-55	-8.615850e-47
Msa0073670	Msa0642880	0.814209	1.731284e-51	-8.615850e-47
Msa0094850	Msa0642880	0.819554	1.092469e-52	-8.615850e-47
Msa0103180	Msa0642880	0.804917	1.716075e-49	-8.615850e-47
Msa0104550	Msa0642880	0.823260	1.524622e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642880	MtrunA17_Chr4g0028841	94.426	610	34	0	1	610	1	610	0.0	1149
Msa0642880	MtrunA17_Chr2g0326901	69.318	616	180	6	1	613	1	610	0.0	858
Msa0642880	MtrunA17_Chr7g0237401	45.161	310	156	8	204	508	68	368	5.62e-75	246
Msa0642880	MtrunA17_Chr2g0320111	45.667	300	146	7	216	507	80	370	1.56e-74	244
Msa0642880	MtrunA17_Chr5g0443691	45.161	310	150	9	211	511	80	378	1.14e-73	241
Msa0642880	MtrunA17_Chr5g0413981	41.026	312	165	10	207	510	43	343	2.66e-73	239
Msa0642880	MtrunA17_Chr7g0221191	37.868	441	231	14	76	510	268	671	2.78e-73	249
Msa0642880	MtrunA17_Chr5g0403891	45.085	295	150	5	216	507	244	529	5.46e-73	245
Msa0642880	MtrunA17_Chr8g0373501	44.407	295	152	5	216	507	325	610	1.44e-72	246
Msa0642880	MtrunA17_Chr1g0183041	44.884	303	153	6	212	510	335	627	2.28e-72	247

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0642880	AT2G28250.2	51.545	615	230	12	1	609	1	553	0.0	580
Msa0642880	AT2G28250.5	51.545	615	230	12	1	609	1	553	0.0	580
Msa0642880	AT2G28250.4	51.545	615	230	12	1	609	1	553	0.0	580
Msa0642880	AT2G28250.1	51.545	615	230	12	1	609	1	553	0.0	580
Msa0642880	AT2G28250.6	51.545	615	230	12	1	609	1	553	0.0	580
Msa0642880	AT2G28250.3	51.545	615	230	12	1	609	1	553	0.0	580
Msa0642880	AT3G58690.1	46.488	299	143	8	216	507	75	363	9.06e-78	253
Msa0642880	AT4G34440.2	43.465	329	169	6	187	507	265	584	2.70e-72	245
Msa0642880	AT4G34440.1	43.465	329	169	6	187	507	265	584	2.70e-72	245
Msa0642880	AT3G20530.1	43.648	307	155	8	216	515	70	365	5.54e-72	237

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Find 153 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCAGAGTCTGCTTC+TGG	0.379234	4_3:-45189006	None:intergenic
AAAGAAACACATTTCCAGCA+AGG	0.580304	4_3:+45188461	Msa0642880:CDS
AAATCATGTGATTGCCACTC+AGG	0.486918	4_3:+45188070	Msa0642880:CDS
AAATGATAAGCTTAACTTCA+AGG	0.424095	4_3:-45191216	None:intergenic
AAATGATTCGAACCGAGGCT+CGG	0.548421	4_3:-45190767	None:intergenic
AACAGAAGTGCATACCTGAG+TGG	0.685771	4_3:-45188084	None:intergenic
AACCTAATCAGCCATAGGAC+AGG	0.577251	4_3:+45188633	Msa0642880:CDS
AACTTGCAGATCACTGATCT+TGG	0.459097	4_3:+45189680	Msa0642880:intron
AAGAAGAAAGCCTCGTTATA+TGG	0.254691	4_3:+45189900	Msa0642880:CDS
AAGCGCCTAAAAGATCATGG+AGG	0.721695	4_3:+45188982	Msa0642880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTGCAATATATAGCTAGAA+GGG	-	chr4_3:45186848-45186867	None:intergenic	30.0%
ATGTGCAATATATAGCTAGA+AGG	-	chr4_3:45186849-45186868	None:intergenic	30.0%
TAGAAAATGAACTCACTTGA+TGG	-	chr4_3:45187099-45187118	None:intergenic	30.0%
ATAAATGCAAGTCAGTTAAC+TGG	-	chr4_3:45187122-45187141	None:intergenic	30.0%
ATCAATTGAATGAAGACAGA+TGG	-	chr4_3:45187177-45187196	None:intergenic	30.0%
AAAGTAATTGAACCATGACA+AGG	+	chr4_3:45187372-45187391	Msa0642880:intron	30.0%
CTGAATCAGATAGAAAATGA+TGG	-	chr4_3:45187477-45187496	None:intergenic	30.0%
TTTCTATCTGATTCAGTACA+TGG	+	chr4_3:45187481-45187500	Msa0642880:intron	30.0%
GACTCTGATATAACATTTGT+TGG	+	chr4_3:45187523-45187542	Msa0642880:intron	30.0%
GGAAGAAAGAAACAAATAGA+CGG	-	chr4_3:45187553-45187572	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	45186427	45191313	45186427	ID=Msa0642880;Name=Msa0642880
chr4_3	mRNA	45186427	45191313	45186427	ID=Msa0642880-mRNA-1;Parent=Msa0642880;Name=Msa0642880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=429\|1\|1\|1\|0.7\|0.72\|11\|497\|613
chr4_3	exon	45186427	45186731	45186427	ID=Msa0642880-mRNA-1:exon:10398;Parent=Msa0642880-mRNA-1
chr4_3	exon	45186996	45187102	45186996	ID=Msa0642880-mRNA-1:exon:10399;Parent=Msa0642880-mRNA-1
chr4_3	exon	45187767	45187853	45187767	ID=Msa0642880-mRNA-1:exon:10400;Parent=Msa0642880-mRNA-1
chr4_3	exon	45187978	45188091	45187978	ID=Msa0642880-mRNA-1:exon:10401;Parent=Msa0642880-mRNA-1
chr4_3	exon	45188179	45188292	45188179	ID=Msa0642880-mRNA-1:exon:10402;Parent=Msa0642880-mRNA-1
chr4_3	exon	45188436	45188714	45188436	ID=Msa0642880-mRNA-1:exon:10403;Parent=Msa0642880-mRNA-1
chr4_3	exon	45188794	45189035	45188794	ID=Msa0642880-mRNA-1:exon:10404;Parent=Msa0642880-mRNA-1
chr4_3	exon	45189175	45189471	45189175	ID=Msa0642880-mRNA-1:exon:10405;Parent=Msa0642880-mRNA-1
chr4_3	exon	45189689	45189922	45189689	ID=Msa0642880-mRNA-1:exon:10406;Parent=Msa0642880-mRNA-1
chr4_3	exon	45190139	45190369	45190139	ID=Msa0642880-mRNA-1:exon:10407;Parent=Msa0642880-mRNA-1
chr4_3	exon	45190556	45191313	45190556	ID=Msa0642880-mRNA-1:exon:10408;Parent=Msa0642880-mRNA-1
chr4_3	five_prime_UTR	45186427	45186731	45186427	ID=Msa0642880-mRNA-1:five_prime_utr;Parent=Msa0642880-mRNA-1
chr4_3	five_prime_UTR	45186996	45187102	45186996	ID=Msa0642880-mRNA-1:five_prime_utr;Parent=Msa0642880-mRNA-1
chr4_3	five_prime_UTR	45187767	45187783	45187767	ID=Msa0642880-mRNA-1:five_prime_utr;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45187784	45187853	45187784	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45187978	45188091	45187978	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45188179	45188292	45188179	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45188436	45188714	45188436	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45188794	45189035	45188794	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45189175	45189471	45189175	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45189689	45189922	45189689	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45190139	45190369	45190139	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	CDS	45190556	45190816	45190556	ID=Msa0642880-mRNA-1:cds;Parent=Msa0642880-mRNA-1
chr4_3	three_prime_UTR	45190817	45191313	45190817	ID=Msa0642880-mRNA-1:three_prime_utr;Parent=Msa0642880-mRNA-1

Gene Sequence

>Msa0642880

ATGAAGTCGCAGATCAAAATTTCTCTTGCTATTGTTATTAGTTTGCTCTGGATTCAACACTCATTTTGTGATGAAGCATCTGATACATCTGTCCTAAACAAGTGGAAATGTATATGCTCTACTTTCCAAGGGAACCAAAGCAACTCTCTTGGTAATTGTTCAAAATCATGTGATTGCCACTCAGATGCCGAAGAGGGTGCATCCATATGGACATGTATCTGTGATCCCAATGGATTTCCTGAAGTGGCAGCAGATGGTAATAGCTCTAATTGCTTTCACGCCTGCAACTGCACATGGGGAACTATCAGCACGTCATTAGGTTCAAAGAAACACATTTCCAGCAAGGTTGTTGTAGTTATCCTAGTGATATGTGTTATATGCACAACTATTGCATTGCTTACCTCAGCTGTATGCTACGTCTACCGAAGGGACAGATGCTCTATTCAATCACCAATATTCTCATCGGATAAGGAAACCAGTAGTGGTAGTACCACCAACCTAATCAGCCATAGGACAGGAACTTCTTCAGTGCCAGAAGCAAAACTTTTTATAAGTTCTCCTATTTGTCACATCACAGGATGCTTTCAGAAAGCCTCTTTTTTGTTTGGGAGCCAAAAAGAAACTTTTCATGGAAACATTATTCAGTTTTCATTTACTGAACTGGAAAGTGCCACTGATAACTTTTCAGCTACAAACCTTATTGGAGTAGGCGGAAGTAGTTACGTATACCGTGGTCGGCTAAAAGATGGCAATATTGTGGCAGTTAAGCGCCTAAAAGATCATGGAGGGCCAGAAGCAGACTCTGCATGTTTCAAGGAGATTGAACTATTAGCTAGACTTCATCATTGTCATTTGGTGCCGTTACTTGGATACTGCTTAGAATCAAAAGGAAAACATGTTCAAAGGTTATTAGTATTTGAGTACATGATTAATGGAAATTTGAGGGAGTGTTTAGATGGAGTTTCTGGAAAATATATGGATTGGACTACTCGTGTTACGATTGCAATTGGAGCAGCAAGGGGCTTGGAATATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTGAAATCAACCAACATTCTTCTAGATGAAAATTGGCAAGCAAAGATCACTGATCTTGGTATGGCTAAAAACTTGAGATCTGATGACCTACCAAGCGGTTCAGATTCTCCAGCAAGAATGCAAGGGACATTTGGCTATTTTGCACCTGAGTATGCGATTATTGGTAGAGCCTCTCTTGAATCAGACGTCTTCAGTTTTGGTGTGGTTCTTCTTGAGCTTATCACGGGTCGACATCCTATCCATAAAACTACAGGAAAAGAAGAAAGCCTCGTTATATGGGCTTCTCCTCGTTTACTGGACAGTAGACGAGTAATATCGGAGTTAGTTGATCCAGAATTGAAAGGAAACTTCCCAGAAGAAGAGGTACATATAATGGCATACCTAGCAAAGGAGTGCTTGTTGCTGGATCCGGACACTCGACCAACCATGAGCGAGGTTGTTCAAATGCTTTCAAGTATTTCTCCGGGAAAATCAAGGAGGAGAAGAAACATTCCCACTAGCTTGTTTCAGGAAGCGGAGAATGCAGAAAAGCAAGGGCAAGTTACATCCGATAAATTTCTAGCTCATAATTTATCGTCGCTAGATATCGATCACAATCCATGTGTTGGAAACAAAAATAAAGAAGAAGATGCAGTTTCAGCCGAGTATATGGAAAGTTTAATCCTGTTGACATCAAAATCTAATAGCTCTCATGCATCAGAAGAGGAAATCGTAGACATAACCGAGCCTCGGTTCGAATCATTTTGCATGACAGACGGCACTGTCCCTTGA

Protein sequence

>Msa0642880

MKSQIKISLAIVISLLWIQHSFCDEASDTSVLNKWKCICSTFQGNQSNSLGNCSKSCDCHSDAEEGASIWTCICDPNGFPEVAADGNSSNCFHACNCTWGTISTSLGSKKHISSKVVVVILVICVICTTIALLTSAVCYVYRRDRCSIQSPIFSSDKETSSGSTTNLISHRTGTSSVPEAKLFISSPICHITGCFQKASFLFGSQKETFHGNIIQFSFTELESATDNFSATNLIGVGGSSYVYRGRLKDGNIVAVKRLKDHGGPEADSACFKEIELLARLHHCHLVPLLGYCLESKGKHVQRLLVFEYMINGNLRECLDGVSGKYMDWTTRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSGSDSPARMQGTFGYFAPEYAIIGRASLESDVFSFGVVLLELITGRHPIHKTTGKEESLVIWASPRLLDSRRVISELVDPELKGNFPEEEVHIMAYLAKECLLLDPDTRPTMSEVVQMLSSISPGKSRRRRNIPTSLFQEAENAEKQGQVTSDKFLAHNLSSLDIDHNPCVGNKNKEEDAVSAEYMESLILLTSKSNSSHASEEEIVDITEPRFESFCMTDGTVP*