AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0824640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824640 MtrunA17_Chr5g0445881 85.892 482 46 5 1 467 1 475 0.0 685
Msa0824640 MtrunA17_Chr5g0445771 52.481 524 147 9 3 451 1 497 3.41e-143 419
Msa0824640 MtrunA17_Chr5g0445871 83.871 217 23 2 256 466 1 211 4.76e-102 303
Msa0824640 MtrunA17_Chr5g0445831 46.575 438 119 7 1 351 1 410 7.57e-102 311
Msa0824640 MtrunA17_Chr5g0445811 50.278 360 98 9 1 357 1 282 8.77e-89 272
Msa0824640 MtrunA17_Chr5g0446181 44.170 446 132 14 1 425 1 350 4.30e-77 245
Msa0824640 MtrunA17_Chr5g0445861 42.045 440 150 12 1 351 1 424 1.51e-72 235
Msa0824640 MtrunA17_Chr5g0445961 36.982 338 155 9 1 289 1 329 5.97e-37 142
Msa0824640 MtrunA17_Chr5g0445961 43.662 213 88 4 99 299 213 405 6.71e-36 139
Msa0824640 MtrunA17_Chr5g0446171 40.394 203 80 4 1 193 1 172 3.65e-28 112
Msa0824640 MtrunA17_Chr5g0445821 55.455 110 39 3 353 460 5 106 1.01e-21 90.1
Msa0824640 MtrunA17_Chr5g0446191 48.031 127 54 3 22 136 10 136 1.68e-20 94.4
Msa0824640 MtrunA17_Chr5g0446231 48.760 121 52 2 26 136 1 121 2.42e-20 94.0
Msa0824640 MtrunA17_Chr5g0413371 47.287 129 65 2 23 150 3 129 3.15e-20 93.6
Msa0824640 MtrunA17_Chr5g0445801 51.818 110 46 3 353 460 5 109 3.15e-18 80.1
Msa0824640 MtrunA17_Chr5g0445851 60.714 84 30 1 380 460 29 112 3.82e-14 68.6
Msa0824640 MtrunA17_Chr1g0185261 30.116 259 81 7 70 320 26 192 2.45e-12 66.2
Msa0824640 MtrunA17_Chr5g0434161 47.222 72 35 1 133 204 19 87 1.21e-11 61.2
Msa0824640 MtrunA17_Chr5g0434161 47.436 78 41 0 104 181 18 95 9.28e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 101 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGAGATTTGTGAAAA+AGG 0.177538 5_3:-64055679 Msa0824640:CDS
GAGGAAAATGATTGGTAAAT+TGG 0.230977 5_3:-64055395 Msa0824640:CDS
AGTGATACCACAGACCTTAT+TGG 0.263574 5_3:+64052976 None:intergenic
TGAGCTAGAGGCTAAGATTT+TGG 0.268067 5_3:-64055473 Msa0824640:CDS
TGGTGACCCAGGTTCAGTTT+TGG 0.318302 5_3:+64055900 None:intergenic
CTTGCACATCCTTGTTCCCT+TGG 0.337027 5_3:+64054897 None:intergenic
AACTATTAGCCAAAGTAATT+AGG 0.340914 5_3:-64052914 Msa0824640:three_prime_UTR
TAAGAAGAAGAATGAATTAG+AGG 0.349069 5_3:-64055569 Msa0824640:CDS
TGACAGTGTTGAAACTGTTT+TGG 0.353564 5_3:-64055782 Msa0824640:CDS
CGTAAGATTGAGATATTACT+TGG 0.360048 5_3:-64055175 Msa0824640:CDS
TAGGAATAAGGTTCGTGTAT+TGG 0.381629 5_3:-64055302 Msa0824640:CDS
AGCTAGTGGAAGAGTGAAAC+TGG 0.389413 5_3:-64053268 Msa0824640:CDS
TTCAAAGTAGTTAGGGTTTG+TGG 0.390284 5_3:+64055864 None:intergenic
TTCTCGATGATCTTCCAATA+AGG 0.392872 5_3:-64052990 Msa0824640:CDS
TTTAACAGTGTCAGCTGCAT+TGG 0.395113 5_3:+64053080 None:intergenic
TAAATTGGAGCATGAAGTTT+CGG 0.399727 5_3:-64055380 Msa0824640:CDS
TTGAAGAGTGTAGGTGTCTC+TGG 0.402552 5_3:-64055085 Msa0824640:CDS
AAGGAAACTATAAGTAGGTT+GGG 0.404054 5_3:-64055229 Msa0824640:CDS
TCCTCTAAATTTCTTGTACA+TGG 0.413034 5_3:+64055150 None:intergenic
GAAGGAAACTATAAGTAGGT+TGG 0.440805 5_3:-64055230 Msa0824640:CDS
GTCCCTGCTAATCACACTCT+TGG 0.441563 5_3:-64054947 Msa0824640:CDS
ATGTTATAGCCTAATTACTT+TGG 0.444045 5_3:+64052905 None:intergenic
TCCATGTACAAGAAATTTAG+AGG 0.446165 5_3:-64055151 Msa0824640:CDS
GATCTTCTTGACGATGAGTT+CGG 0.446687 5_3:-64054992 Msa0824640:CDS
TGAGGAAATCGAAGAAGAAA+TGG 0.446716 5_3:-64055354 Msa0824640:CDS
TTAACAGTGTCAGCTGCATT+GGG 0.447220 5_3:+64053081 None:intergenic
TTAGTAGCCATAGGATCAAC+AGG 0.451539 5_3:+64055037 None:intergenic
ACCTACACTCTTCAAAAGAT+TGG 0.453769 5_3:+64055093 None:intergenic
AGTAGTTAGGGTTTGTGGAA+TGG 0.460464 5_3:+64055869 None:intergenic
ACTCCAAGAGTGTGATTAGC+AGG 0.461799 5_3:+64054944 None:intergenic
GCTGGACTTGAGGTTAGAAA+TGG 0.469464 5_3:-64055259 Msa0824640:CDS
CTCTGGTGGTGGTAGTAATG+AGG 0.471140 5_3:-64055068 Msa0824640:CDS
GGTTAGAAATGGCGAGTTGA+AGG 0.474088 5_3:-64055248 Msa0824640:CDS
ATCGTCGGAGGATGAAGAAC+TGG 0.476363 5_3:+64053020 None:intergenic
GAAGTCACCTGTTGATCCTA+TGG 0.481237 5_3:-64055044 Msa0824640:CDS
AAGAAGAAGAATGAATTAGA+GGG 0.483632 5_3:-64055568 Msa0824640:CDS
GGTTGGAAGACTTTCGAGGT+TGG 0.484020 5_3:-64055125 Msa0824640:CDS
GAGTATTCATGAGCTTGTTA+TGG 0.485224 5_3:-64055836 Msa0824640:CDS
GGAGGATGAAGAACTGGCAC+TGG 0.495184 5_3:+64053026 None:intergenic
GATGTGCAAGGTTCATCATC+AGG 0.498818 5_3:-64054884 Msa0824640:intron
AAGAAATTTAGAGGACTGGT+TGG 0.504312 5_3:-64055142 Msa0824640:CDS
GTGGAGGATAATAATGAACT+TGG 0.505091 5_3:-64055424 Msa0824640:CDS
AAATGCTTTGGCTGGACTTG+AGG 0.508557 5_3:-64055269 Msa0824640:CDS
GTACAAGAAATTTAGAGGAC+TGG 0.508835 5_3:-64055146 Msa0824640:CDS
TGTGTTGCCACGGATGGACT+TGG 0.510680 5_3:+64053120 None:intergenic
GGGTTTGTGGAATGGAAACC+TGG 0.511624 5_3:+64055877 None:intergenic
AAAAGGTCATGTGGCTAACA+AGG 0.513200 5_3:+64052871 None:intergenic
ATTCAACCCAAAACTGAACC+TGG 0.515291 5_3:-64055907 Msa0824640:CDS
TGAGGAAGTTGAATGAAAAG+AGG 0.516495 5_3:-64055447 Msa0824640:CDS
TGGAAGACTTTCGAGGTTGG+AGG 0.517961 5_3:-64055122 Msa0824640:CDS
TGTTGCGTCGAACGTGTCAA+TGG 0.530627 5_3:-64055813 Msa0824640:CDS
GAATAAGGTTCGTGTATTGG+AGG 0.532923 5_3:-64055299 Msa0824640:CDS
GACTGGTTGGAAGACTTTCG+AGG 0.538485 5_3:-64055129 Msa0824640:CDS
AGTGTAGGTGTCTCTGGTGG+TGG 0.543623 5_3:-64055079 Msa0824640:CDS
AGTACTCAACCGCAGAGCCA+AGG 0.547766 5_3:-64054914 Msa0824640:CDS
GGGGAAAGAAAAGAGTAAGT+TGG 0.547900 5_3:-64055209 Msa0824640:CDS
TATTGAAGACAGAGATGAAG+AGG 0.548764 5_3:-64055014 Msa0824640:CDS
TGGAAACCTGGTGGTGACCC+AGG 0.549157 5_3:+64055889 None:intergenic
TCTGGTGGTGGTAGTAATGA+GGG 0.553890 5_3:-64055067 Msa0824640:CDS
GAGGAAGTTGAATGAAAAGA+GGG 0.555930 5_3:-64055446 Msa0824640:CDS
AAAATGTAGGCAGACGGGGC+AGG 0.558347 5_3:-64052941 Msa0824640:CDS
TCCTTGTTCCCTTGGCTCTG+CGG 0.558940 5_3:+64054905 None:intergenic
ACTCAGAGAAGAGCTTCACC+TGG 0.560115 5_3:-64055743 Msa0824640:CDS
AAGAAAGAATGGTGAGCTAG+AGG 0.561807 5_3:-64055485 Msa0824640:CDS
AGCATGAAGTTTCGGAGCTG+AGG 0.564279 5_3:-64055372 Msa0824640:CDS
AGAAGAAGAATGAATTAGAG+GGG 0.569093 5_3:-64055567 Msa0824640:CDS
GGTGTGTTGAGGAAAATGAT+TGG 0.569444 5_3:-64055403 Msa0824640:CDS
CGTCGTCGTCGTCATCATCA+AGG 0.575320 5_3:+64053223 None:intergenic
AATAAGGTTCGTGTATTGGA+GGG 0.576354 5_3:-64055298 Msa0824640:CDS
ACCGCAGAGCCAAGGGAACA+AGG 0.578207 5_3:-64054906 Msa0824640:CDS
TGGAATTGCTGTGAAGAATG+AGG 0.583460 5_3:-64053145 Msa0824640:CDS
ACTGAACCTGGGTCACCACC+AGG 0.584855 5_3:-64055895 Msa0824640:CDS
AGGAAACTATAAGTAGGTTG+GGG 0.587533 5_3:-64055228 Msa0824640:CDS
GAAGTTGAATGAAAAGAGGG+TGG 0.590744 5_3:-64055443 Msa0824640:CDS
GTTGAATGAAAAGAGGGTGG+AGG 0.590912 5_3:-64055440 Msa0824640:CDS
AGTTGAAGGAAACTATAAGT+AGG 0.591344 5_3:-64055234 Msa0824640:CDS
GTTGCGTCGAACGTGTCAAT+GGG 0.592352 5_3:-64055812 Msa0824640:CDS
GATGTGTTAAGAAGAAAGAA+TGG 0.593843 5_3:-64055496 Msa0824640:CDS
ATCGAGAAATGACGAATCGT+CGG 0.598864 5_3:+64053005 None:intergenic
GTACTCAACCGCAGAGCCAA+GGG 0.604360 5_3:-64054913 Msa0824640:CDS
GAAGAAGAATGAATTAGAGG+GGG 0.609017 5_3:-64055566 Msa0824640:CDS
GATGGTGGGTCTATGTCTCA+AGG 0.610890 5_3:-64053192 Msa0824640:CDS
ATAATGAACTTGGTGTGTTG+AGG 0.614106 5_3:-64055414 Msa0824640:CDS
CGGAAATGACACTGTTGAGG+AGG 0.614193 5_3:-64054972 Msa0824640:CDS
ATAACCTTGAGAGTTTCTCC+AGG 0.615756 5_3:+64055725 None:intergenic
GAGAAATGACGAATCGTCGG+AGG 0.623666 5_3:+64053008 None:intergenic
GACGACGACGACGAGGATGG+TGG 0.625192 5_3:-64053207 Msa0824640:CDS
ACGACGACGACGAGGATGGT+GGG 0.630206 5_3:-64053206 Msa0824640:CDS
TGATCTTCCAATAAGGTCTG+TGG 0.630656 5_3:-64052983 Msa0824640:CDS
TCTTCAATATTAGTAGCCAT+AGG 0.636021 5_3:+64055028 None:intergenic
CAAGGGAACAAGGATGTGCA+AGG 0.636506 5_3:-64054896 Msa0824640:CDS
TTCAACCCAAAACTGAACCT+GGG 0.639172 5_3:-64055906 Msa0824640:CDS
GTTCGGAAATGACACTGTTG+AGG 0.644475 5_3:-64054975 Msa0824640:CDS
TGAGGTTCCAAGTCCATCCG+TGG 0.647482 5_3:-64053127 Msa0824640:CDS
TTCACCTGGAGAAACTCTCA+AGG 0.655090 5_3:-64055729 Msa0824640:CDS
CTGGTGGTGGTAGTAATGAG+GGG 0.658244 5_3:-64055066 Msa0824640:CDS
CTCCAAGAGTGTGATTAGCA+GGG 0.666199 5_3:+64054945 None:intergenic
GTAAGATTGAGATATTACTT+GGG 0.675489 5_3:-64055174 Msa0824640:CDS
AAGAGTGTAGGTGTCTCTGG+TGG 0.688326 5_3:-64055082 Msa0824640:CDS
GGTGGGTCTATGTCTCAAGG+AGG 0.743834 5_3:-64053189 Msa0824640:CDS
TTTGTGGAATGGAAACCTGG+TGG 0.770855 5_3:+64055880 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAAACTTATTTTCTTT+TGG + chr5_3:64055210-64055229 None:intergenic 10.0%
!!! GAAAAGTTACTAATATTTTT+GGG + chr5_3:64054512-64054531 None:intergenic 15.0%
!!! AGAAAAGTTACTAATATTTT+TGG + chr5_3:64054513-64054532 None:intergenic 15.0%
!!! TCATTTTTTCAAAGTAGTTA+GGG + chr5_3:64052913-64052932 None:intergenic 20.0%
!! CTCTAATTTCAAATTATGAT+GGG + chr5_3:64054086-64054105 None:intergenic 20.0%
!! ACTCTAATTTCAAATTATGA+TGG + chr5_3:64054087-64054106 None:intergenic 20.0%
!! AAGATAAACTCAATTAAAAC+CGG - chr5_3:64054125-64054144 Msa0824640:intron 20.0%
!!! ATTAGTAACTTTTCTAGAAT+AGG - chr5_3:64054518-64054537 Msa0824640:intron 20.0%
!! GTCAAAGTATAAACAATAAA+TGG + chr5_3:64054838-64054857 None:intergenic 20.0%
!! GTGTAAAATAATAACTTTCT+AGG + chr5_3:64054881-64054900 None:intergenic 20.0%
!!! TTAAACTTATTTTCTTTTGG+TGG + chr5_3:64055207-64055226 None:intergenic 20.0%
!! AAATAAAGTGAAAATCTTGT+TGG - chr5_3:64055234-64055253 Msa0824640:CDS 20.0%
!! TTGAAAGAAGAAAAAAATGT+AGG - chr5_3:64055813-64055832 Msa0824640:CDS 20.0%
!! TTTAAAAAAAAAAGGTCATG+TGG + chr5_3:64055908-64055927 None:intergenic 20.0%
!!! CTCATTTTTTCAAAGTAGTT+AGG + chr5_3:64052914-64052933 None:intergenic 25.0%
! TAAGAAGAAGAATGAATTAG+AGG - chr5_3:64053198-64053217 Msa0824640:CDS 25.0%
! AAGAAGAAGAATGAATTAGA+GGG - chr5_3:64053199-64053218 Msa0824640:CDS 25.0%
!! AAGAAAAAATGTGTTGATGA+TGG - chr5_3:64053238-64053257 Msa0824640:CDS 25.0%
! GTAAGATTGAGATATTACTT+GGG - chr5_3:64053593-64053612 Msa0824640:intron 25.0%
! ATATTGAATTTACGTGTGAT+CGG - chr5_3:64053973-64053992 Msa0824640:intron 25.0%
! AAACAAGAAAATCATGTACA+AGG + chr5_3:64054032-64054051 None:intergenic 25.0%
!!! AAATTATGATGGGTAGTTAA+TGG + chr5_3:64054076-64054095 None:intergenic 25.0%
! AGATAAACTCAATTAAAACC+GGG - chr5_3:64054126-64054145 Msa0824640:intron 25.0%
!!! TCAAATAAATTTTGGTTCCA+GGG - chr5_3:64054337-64054356 Msa0824640:intron 25.0%
! TGGAAGATAAATTAATGAGA+CGG - chr5_3:64054438-64054457 Msa0824640:intron 25.0%
! AAACAATAAATGGTTTCAGA+AGG + chr5_3:64054828-64054847 None:intergenic 25.0%
! TGAAAATCTTGTTGGATTAT+GGG - chr5_3:64055242-64055261 Msa0824640:CDS 25.0%
! AGAACAACAATATAAAAGAG+AGG + chr5_3:64055366-64055385 None:intergenic 25.0%
! AACTATTAGCCAAAGTAATT+AGG - chr5_3:64055853-64055872 Msa0824640:CDS 25.0%
! ATGTTATAGCCTAATTACTT+TGG + chr5_3:64055865-64055884 None:intergenic 25.0%
!!! GTGGCTTGTTTAAAAAAAAA+AGG + chr5_3:64055916-64055935 None:intergenic 25.0%
!!! TTGAAACTGTTTTGGAGAAT+AGG - chr5_3:64052993-64053012 Msa0824640:CDS 30.0%
! CTCTTCTCTTTTCTTAAACT+CGG + chr5_3:64053077-64053096 None:intergenic 30.0%
AGAGAAGAGATTTGTGAAAA+AGG - chr5_3:64053088-64053107 Msa0824640:CDS 30.0%
GAGAAGAGATTTGTGAAAAA+GGG - chr5_3:64053089-64053108 Msa0824640:CDS 30.0%
!! AGCACTTTTGAAAGAAGTTA+AGG - chr5_3:64053135-64053154 Msa0824640:CDS 30.0%
AGAAGAAGAATGAATTAGAG+GGG - chr5_3:64053200-64053219 Msa0824640:CDS 30.0%
GATGTGTTAAGAAGAAAGAA+TGG - chr5_3:64053271-64053290 Msa0824640:intron 30.0%
GAGGAAAATGATTGGTAAAT+TGG - chr5_3:64053372-64053391 Msa0824640:intron 30.0%
TAAATTGGAGCATGAAGTTT+CGG - chr5_3:64053387-64053406 Msa0824640:intron 30.0%
AGTTGAAGGAAACTATAAGT+AGG - chr5_3:64053533-64053552 Msa0824640:intron 30.0%
AAGGAAACTATAAGTAGGTT+GGG - chr5_3:64053538-64053557 Msa0824640:intron 30.0%
CGTAAGATTGAGATATTACT+TGG - chr5_3:64053592-64053611 Msa0824640:intron 30.0%
TCCATGTACAAGAAATTTAG+AGG - chr5_3:64053616-64053635 Msa0824640:intron 30.0%
TCCTCTAAATTTCTTGTACA+TGG + chr5_3:64053620-64053639 None:intergenic 30.0%
TCTTCAATATTAGTAGCCAT+AGG + chr5_3:64053742-64053761 None:intergenic 30.0%
AAATGTTAGATCAGATTGCT+AGG - chr5_3:64053998-64054017 Msa0824640:intron 30.0%
CAATTAAAACCGGGATATTA+TGG - chr5_3:64054135-64054154 Msa0824640:intron 30.0%
! ATCTGATTTTCCAATGGAAA+TGG - chr5_3:64054286-64054305 Msa0824640:intron 30.0%
! GTGGAACCTCAAATAAATTT+TGG - chr5_3:64054329-64054348 Msa0824640:intron 30.0%
CTGGAACCAAAATTTATTTG+AGG + chr5_3:64054338-64054357 None:intergenic 30.0%
!!! CTCAAATAAATTTTGGTTCC+AGG - chr5_3:64054336-64054355 Msa0824640:intron 30.0%
! ATCATTCTTTTGACCTCTTT+AGG - chr5_3:64054727-64054746 Msa0824640:intron 30.0%
!!! GAAAATCGTTTTAGGAAACA+TGG + chr5_3:64054905-64054924 None:intergenic 30.0%
! TCTTGGTTGAAAATCGTTTT+AGG + chr5_3:64054913-64054932 None:intergenic 30.0%
AAAAAGGGACTTAATTGTTG+TGG - chr5_3:64054977-64054996 Msa0824640:CDS 30.0%
ACATAAGAAAGAAACAAGAG+TGG - chr5_3:64055092-64055111 Msa0824640:CDS 30.0%
!! ACTTATTTTCTTTTGGTGGA+AGG + chr5_3:64055203-64055222 None:intergenic 30.0%
GTGAAAATCTTGTTGGATTA+TGG - chr5_3:64055241-64055260 Msa0824640:CDS 30.0%
!! CATGAAAAGAAAGCTGTTTT+TGG - chr5_3:64055602-64055621 Msa0824640:CDS 30.0%
AAGAAAAAAATGTAGGCAGA+CGG - chr5_3:64055820-64055839 Msa0824640:CDS 30.0%
TTCAAAGTAGTTAGGGTTTG+TGG + chr5_3:64052906-64052925 None:intergenic 35.0%
!! GAGTATTCATGAGCTTGTTA+TGG - chr5_3:64052931-64052950 Msa0824640:exon 35.0%
!! TGACAGTGTTGAAACTGTTT+TGG - chr5_3:64052985-64053004 Msa0824640:CDS 35.0%
GAAGAAGAATGAATTAGAGG+GGG - chr5_3:64053201-64053220 Msa0824640:CDS 35.0%
TGAGGAAGTTGAATGAAAAG+AGG - chr5_3:64053320-64053339 Msa0824640:intron 35.0%
GAGGAAGTTGAATGAAAAGA+GGG - chr5_3:64053321-64053340 Msa0824640:intron 35.0%
GTGGAGGATAATAATGAACT+TGG - chr5_3:64053343-64053362 Msa0824640:intron 35.0%
!! ATAATGAACTTGGTGTGTTG+AGG - chr5_3:64053353-64053372 Msa0824640:intron 35.0%
TGAGGAAATCGAAGAAGAAA+TGG - chr5_3:64053413-64053432 Msa0824640:intron 35.0%
! TTTTGATGCGCTTAGGAATA+AGG - chr5_3:64053453-64053472 Msa0824640:intron 35.0%
TAGGAATAAGGTTCGTGTAT+TGG - chr5_3:64053465-64053484 Msa0824640:intron 35.0%
AATAAGGTTCGTGTATTGGA+GGG - chr5_3:64053469-64053488 Msa0824640:intron 35.0%
GAAGGAAACTATAAGTAGGT+TGG - chr5_3:64053537-64053556 Msa0824640:intron 35.0%
AGGAAACTATAAGTAGGTTG+GGG - chr5_3:64053539-64053558 Msa0824640:intron 35.0%
GTACAAGAAATTTAGAGGAC+TGG - chr5_3:64053621-64053640 Msa0824640:intron 35.0%
! AAGAAATTTAGAGGACTGGT+TGG - chr5_3:64053625-64053644 Msa0824640:intron 35.0%
!! ACCAATCTTTTGAAGAGTGT+AGG - chr5_3:64053673-64053692 Msa0824640:intron 35.0%
ACCTACACTCTTCAAAAGAT+TGG + chr5_3:64053677-64053696 None:intergenic 35.0%
TATTGAAGACAGAGATGAAG+AGG - chr5_3:64053753-64053772 Msa0824640:intron 35.0%
AAGGTTCATCATCAGGTATA+TGG - chr5_3:64053890-64053909 Msa0824640:intron 35.0%
ACCGGGATATTATGGTAATA+TGG - chr5_3:64054143-64054162 Msa0824640:intron 35.0%
CCCATATTACCATAATATCC+CGG + chr5_3:64054147-64054166 None:intergenic 35.0%
CCGGGATATTATGGTAATAT+GGG - chr5_3:64054144-64054163 Msa0824640:intron 35.0%
! TGAATTGTGACTTTTGATGC+TGG - chr5_3:64054182-64054201 Msa0824640:intron 35.0%
! AGCTGAATCTGATTTTCCAA+TGG - chr5_3:64054280-64054299 Msa0824640:intron 35.0%
! AATGCTACTTCCATTTCCAT+TGG + chr5_3:64054299-64054318 None:intergenic 35.0%
!!! AATAAATTTTGGTTCCAGGG+AGG - chr5_3:64054340-64054359 Msa0824640:intron 35.0%
CATGTCTTGTCAATTGCATA+TGG + chr5_3:64054376-64054395 None:intergenic 35.0%
AACTCTCAAGCCTGAAATTA+GGG + chr5_3:64054466-64054485 None:intergenic 35.0%
ACCAATTGTGTCATGATTGT+TGG - chr5_3:64054569-64054588 Msa0824640:intron 35.0%
ACCAACAATCATGACACAAT+TGG + chr5_3:64054573-64054592 None:intergenic 35.0%
! TGAATGAGAGTGGTAATGTA+GGG - chr5_3:64054667-64054686 Msa0824640:intron 35.0%
ACTTCTAACCTAGAAAGAGA+TGG - chr5_3:64054696-64054715 Msa0824640:intron 35.0%
AACGAGATATGTTCCTAAAG+AGG + chr5_3:64054743-64054762 None:intergenic 35.0%
AACTTTCTAGGTAAGAAGCA+AGG + chr5_3:64054869-64054888 None:intergenic 35.0%
! TGTCATAAGTGCTGTTGAAA+AGG - chr5_3:64055021-64055040 Msa0824640:CDS 35.0%
CTCATCTGAATGTTCATCTT+TGG + chr5_3:64055165-64055184 None:intergenic 35.0%
!!! TTGGTGGAAGGTGTTTTAAT+AGG + chr5_3:64055191-64055210 None:intergenic 35.0%
! TTGGATTATGGGTTGAAGTT+TGG - chr5_3:64055253-64055272 Msa0824640:CDS 35.0%
! ATTATGGGTTGAAGTTTGGA+AGG - chr5_3:64055257-64055276 Msa0824640:CDS 35.0%
CAGCAGAAACTTGGAAAATA+AGG + chr5_3:64055409-64055428 None:intergenic 35.0%
!! CTTATTTTCCAAGTTTCTGC+TGG - chr5_3:64055407-64055426 Msa0824640:CDS 35.0%
ATAATACTCCAGCAGAAACT+TGG + chr5_3:64055418-64055437 None:intergenic 35.0%
! TGCTGGAGTATTATCATGTT+TGG - chr5_3:64055424-64055443 Msa0824640:CDS 35.0%
! TCTCTTTTTGTATCAGCTAG+TGG - chr5_3:64055485-64055504 Msa0824640:CDS 35.0%
TTCTCGATGATCTTCCAATA+AGG - chr5_3:64055777-64055796 Msa0824640:CDS 35.0%
AGAAAAAAATGTAGGCAGAC+GGG - chr5_3:64055821-64055840 Msa0824640:CDS 35.0%
ATTCAACCCAAAACTGAACC+TGG - chr5_3:64052860-64052879 Msa0824640:three_prime_UTR 40.0%
TTCAACCCAAAACTGAACCT+GGG - chr5_3:64052861-64052880 Msa0824640:three_prime_UTR 40.0%
AGTAGTTAGGGTTTGTGGAA+TGG + chr5_3:64052901-64052920 None:intergenic 40.0%
ATAACCTTGAGAGTTTCTCC+AGG + chr5_3:64053045-64053064 None:intergenic 40.0%
AAGAAAGAATGGTGAGCTAG+AGG - chr5_3:64053282-64053301 Msa0824640:intron 40.0%
! TGAGCTAGAGGCTAAGATTT+TGG - chr5_3:64053294-64053313 Msa0824640:intron 40.0%
!!! AGGCTAAGATTTTGGAGTTG+AGG - chr5_3:64053302-64053321 Msa0824640:intron 40.0%
GAAGTTGAATGAAAAGAGGG+TGG - chr5_3:64053324-64053343 Msa0824640:intron 40.0%
GGTGTGTTGAGGAAAATGAT+TGG - chr5_3:64053364-64053383 Msa0824640:intron 40.0%
GAATAAGGTTCGTGTATTGG+AGG - chr5_3:64053468-64053487 Msa0824640:intron 40.0%
GGAGGGTGATAAAAATGCTT+TGG - chr5_3:64053486-64053505 Msa0824640:intron 40.0%
GGTGATAAAAATGCTTTGGC+TGG - chr5_3:64053490-64053509 Msa0824640:intron 40.0%
GGGGAAAGAAAAGAGTAAGT+TGG - chr5_3:64053558-64053577 Msa0824640:intron 40.0%
TTAGTAGCCATAGGATCAAC+AGG + chr5_3:64053733-64053752 None:intergenic 40.0%
GATCTTCTTGACGATGAGTT+CGG - chr5_3:64053775-64053794 Msa0824640:intron 40.0%
TGTTAGATCAGATTGCTAGG+TGG - chr5_3:64054001-64054020 Msa0824640:intron 40.0%
TGGTAATATGGGTCTCTAGA+TGG - chr5_3:64054155-64054174 Msa0824640:intron 40.0%
AAGATGAATGAGCCTTAGAG+AGG + chr5_3:64054214-64054233 None:intergenic 40.0%
!! CTTGCTTAGGTTGAGTAACA+TGG + chr5_3:64054241-64054260 None:intergenic 40.0%
!! AGAGAGTCAATAGCTTGCTT+AGG + chr5_3:64054254-64054273 None:intergenic 40.0%
ACATGCTGAGAAAGCTACTT+TGG - chr5_3:64054418-64054437 Msa0824640:intron 40.0%
CAACTCTCAAGCCTGAAATT+AGG + chr5_3:64054467-64054486 None:intergenic 40.0%
TGTGTCATGATTGTTGGTCA+AGG - chr5_3:64054575-64054594 Msa0824640:intron 40.0%
GAAAGAGTAGTGAATGAGAG+TGG - chr5_3:64054657-64054676 Msa0824640:intron 40.0%
! GTGAATGAGAGTGGTAATGT+AGG - chr5_3:64054666-64054685 Msa0824640:intron 40.0%
! GAATGAGAGTGGTAATGTAG+GGG - chr5_3:64054668-64054687 Msa0824640:intron 40.0%
CATTCACACCATCTCTTTCT+AGG + chr5_3:64054707-64054726 None:intergenic 40.0%
TGAAGTAGCAAAACCAGCAA+GGG - chr5_3:64054946-64054965 Msa0824640:CDS 40.0%
TGTTGAAAAGGAAGTCAGGA+AGG - chr5_3:64055033-64055052 Msa0824640:CDS 40.0%
AGAAACAAGAGTGGTAGTCA+TGG - chr5_3:64055101-64055120 Msa0824640:CDS 40.0%
GAGTGGTAGTCATGGTTAAA+TGG - chr5_3:64055109-64055128 Msa0824640:CDS 40.0%
TGGAATTGCTGTGAAGAATG+AGG - chr5_3:64055622-64055641 Msa0824640:CDS 40.0%
!!! GCTTTTTTGTTGTGTTGCCA+CGG + chr5_3:64055660-64055679 None:intergenic 40.0%
TTAACAGTGTCAGCTGCATT+GGG + chr5_3:64055689-64055708 None:intergenic 40.0%
TTTAACAGTGTCAGCTGCAT+TGG + chr5_3:64055690-64055709 None:intergenic 40.0%
ATCGAGAAATGACGAATCGT+CGG + chr5_3:64055765-64055784 None:intergenic 40.0%
TGATCTTCCAATAAGGTCTG+TGG - chr5_3:64055784-64055803 Msa0824640:CDS 40.0%
AGTGATACCACAGACCTTAT+TGG + chr5_3:64055794-64055813 None:intergenic 40.0%
GAAAAAAATGTAGGCAGACG+GGG - chr5_3:64055822-64055841 Msa0824640:CDS 40.0%
AAAAGGTCATGTGGCTAACA+AGG + chr5_3:64055899-64055918 None:intergenic 40.0%
TTTGTGGAATGGAAACCTGG+TGG + chr5_3:64052890-64052909 None:intergenic 45.0%
TTCACCTGGAGAAACTCTCA+AGG - chr5_3:64053038-64053057 Msa0824640:CDS 45.0%
GTTGAATGAAAAGAGGGTGG+AGG - chr5_3:64053327-64053346 Msa0824640:intron 45.0%
! GCAATGCTTTTGATGCGCTT+AGG - chr5_3:64053446-64053465 Msa0824640:intron 45.0%
AAATGCTTTGGCTGGACTTG+AGG - chr5_3:64053498-64053517 Msa0824640:intron 45.0%
GCTGGACTTGAGGTTAGAAA+TGG - chr5_3:64053508-64053527 Msa0824640:intron 45.0%
! GGTTAGAAATGGCGAGTTGA+AGG - chr5_3:64053519-64053538 Msa0824640:intron 45.0%
! TTGAAGAGTGTAGGTGTCTC+TGG - chr5_3:64053682-64053701 Msa0824640:intron 45.0%
!! TCTGGTGGTGGTAGTAATGA+GGG - chr5_3:64053700-64053719 Msa0824640:intron 45.0%
GAAGTCACCTGTTGATCCTA+TGG - chr5_3:64053723-64053742 Msa0824640:intron 45.0%
GTTCGGAAATGACACTGTTG+AGG - chr5_3:64053792-64053811 Msa0824640:intron 45.0%
! CTCCAAGAGTGTGATTAGCA+GGG + chr5_3:64053825-64053844 None:intergenic 45.0%
! ACTCCAAGAGTGTGATTAGC+AGG + chr5_3:64053826-64053845 None:intergenic 45.0%
GATGTGCAAGGTTCATCATC+AGG - chr5_3:64053883-64053902 Msa0824640:intron 45.0%
GATCAGATTGCTAGGTGGAT+TGG - chr5_3:64054006-64054025 Msa0824640:intron 45.0%
!! TGCTGGTTTCTTCCTCTCTA+AGG - chr5_3:64054199-64054218 Msa0824640:intron 45.0%
!! AGTAGCATTGACGTGAACTG+TGG - chr5_3:64054310-64054329 Msa0824640:intron 45.0%
TGGTCTACAGTCAGTTCTCT+AGG + chr5_3:64054553-64054572 None:intergenic 45.0%
TTGGTCAAGGCTCAAGAAAG+TGG - chr5_3:64054588-64054607 Msa0824640:intron 45.0%
AAGAAAGTGGTTGAGATGCC+AGG - chr5_3:64054601-64054620 Msa0824640:intron 45.0%
AGAAAGTGGTTGAGATGCCA+GGG - chr5_3:64054602-64054621 Msa0824640:intron 45.0%
TCAACCAAGATGCTCTCACT+TGG - chr5_3:64054923-64054942 Msa0824640:CDS 45.0%
!! TTCACCAAGTGAGAGCATCT+TGG + chr5_3:64054930-64054949 None:intergenic 45.0%
GTGAAGTAGCAAAACCAGCA+AGG - chr5_3:64054945-64054964 Msa0824640:CDS 45.0%
! TTTTTCGCTAATGCCCTTGC+TGG + chr5_3:64054962-64054981 None:intergenic 45.0%
!! AGCAAGGGCATTAGCGAAAA+AGG - chr5_3:64054961-64054980 Msa0824640:CDS 45.0%
!! GCAAGGGCATTAGCGAAAAA+GGG - chr5_3:64054962-64054981 Msa0824640:CDS 45.0%
! GTGCTGTTGAAAAGGAAGTC+AGG - chr5_3:64055029-64055048 Msa0824640:CDS 45.0%
GGTTGAAGTTTGGAAGGTCA+TGG - chr5_3:64055263-64055282 Msa0824640:CDS 45.0%
ACACTCTAGGTTCGGCTAAA+AGG + chr5_3:64055318-64055337 None:intergenic 45.0%
AGCTAGTGGAAGAGTGAAAC+TGG - chr5_3:64055499-64055518 Msa0824640:CDS 45.0%
!! TTTTGTTGTGTTGCCACGGA+TGG + chr5_3:64055656-64055675 None:intergenic 45.0%
! GGTGACCCAGGTTCAGTTTT+GGG + chr5_3:64052869-64052888 None:intergenic 50.0%
! TGGTGACCCAGGTTCAGTTT+TGG + chr5_3:64052870-64052889 None:intergenic 50.0%
GGGTTTGTGGAATGGAAACC+TGG + chr5_3:64052893-64052912 None:intergenic 50.0%
TGTTGCGTCGAACGTGTCAA+TGG - chr5_3:64052954-64052973 Msa0824640:CDS 50.0%
GTTGCGTCGAACGTGTCAAT+GGG - chr5_3:64052955-64052974 Msa0824640:CDS 50.0%
ACTCAGAGAAGAGCTTCACC+TGG - chr5_3:64053024-64053043 Msa0824640:CDS 50.0%
AGCATGAAGTTTCGGAGCTG+AGG - chr5_3:64053395-64053414 Msa0824640:intron 50.0%
! GACTGGTTGGAAGACTTTCG+AGG - chr5_3:64053638-64053657 Msa0824640:intron 50.0%
GGTTGGAAGACTTTCGAGGT+TGG - chr5_3:64053642-64053661 Msa0824640:intron 50.0%
TGGAAGACTTTCGAGGTTGG+AGG - chr5_3:64053645-64053664 Msa0824640:intron 50.0%
! AAGAGTGTAGGTGTCTCTGG+TGG - chr5_3:64053685-64053704 Msa0824640:intron 50.0%
!! CTCTGGTGGTGGTAGTAATG+AGG - chr5_3:64053699-64053718 Msa0824640:intron 50.0%
!! CTGGTGGTGGTAGTAATGAG+GGG - chr5_3:64053701-64053720 Msa0824640:intron 50.0%
CGGAAATGACACTGTTGAGG+AGG - chr5_3:64053795-64053814 Msa0824640:intron 50.0%
GTCCCTGCTAATCACACTCT+TGG - chr5_3:64053820-64053839 Msa0824640:intron 50.0%
CTTGCACATCCTTGTTCCCT+TGG + chr5_3:64053873-64053892 None:intergenic 50.0%
CAAGGGAACAAGGATGTGCA+AGG - chr5_3:64053871-64053890 Msa0824640:intron 50.0%
ATGGCGAAGAAAAACCTCCC+TGG + chr5_3:64054357-64054376 None:intergenic 50.0%
TGAGACGGAGCCCTAATTTC+AGG - chr5_3:64054453-64054472 Msa0824640:intron 50.0%
TCAGGCTTGAGAGTTGAGAC+AGG - chr5_3:64054471-64054490 Msa0824640:intron 50.0%
CAGGCTTGAGAGTTGAGACA+GGG - chr5_3:64054472-64054491 Msa0824640:intron 50.0%
TTGAGATGCCAGGGTCTAGT+GGG - chr5_3:64054611-64054630 Msa0824640:intron 50.0%
! TGAGAGTGGTAATGTAGGGG+AGG - chr5_3:64054671-64054690 Msa0824640:intron 50.0%
CAGACGAGACACTCTAGGTT+CGG + chr5_3:64055326-64055345 None:intergenic 50.0%
! AACCTAGAGTGTCTCGTCTG+AGG - chr5_3:64055326-64055345 Msa0824640:CDS 50.0%
AACCTCAGACGAGACACTCT+AGG + chr5_3:64055331-64055350 None:intergenic 50.0%
!! GATGGTGGGTCTATGTCTCA+AGG - chr5_3:64055575-64055594 Msa0824640:CDS 50.0%
ATCGTCGGAGGATGAAGAAC+TGG + chr5_3:64055750-64055769 None:intergenic 50.0%
GAGAAATGACGAATCGTCGG+AGG + chr5_3:64055762-64055781 None:intergenic 50.0%
AGTGTAGGTGTCTCTGGTGG+TGG - chr5_3:64053688-64053707 Msa0824640:intron 55.0%
AGTACTCAACCGCAGAGCCA+AGG - chr5_3:64053853-64053872 Msa0824640:intron 55.0%
GTACTCAACCGCAGAGCCAA+GGG - chr5_3:64053854-64053873 Msa0824640:intron 55.0%
!! TCCTTGTTCCCTTGGCTCTG+CGG + chr5_3:64053865-64053884 None:intergenic 55.0%
TTGAGACAGGGCTGTGCTTC+AGG - chr5_3:64054484-64054503 Msa0824640:intron 55.0%
GTTGAGATGCCAGGGTCTAG+TGG - chr5_3:64054610-64054629 Msa0824640:intron 55.0%
AACTAGCTCCCACTAGACCC+TGG + chr5_3:64054622-64054641 None:intergenic 55.0%
CGTCGTCGTCGTCATCATCA+AGG + chr5_3:64055547-64055566 None:intergenic 55.0%
GGTGGGTCTATGTCTCAAGG+AGG - chr5_3:64055578-64055597 Msa0824640:CDS 55.0%
TGAGGTTCCAAGTCCATCCG+TGG - chr5_3:64055640-64055659 Msa0824640:CDS 55.0%
! TGTGTTGCCACGGATGGACT+TGG + chr5_3:64055650-64055669 None:intergenic 55.0%
GGAGGATGAAGAACTGGCAC+TGG + chr5_3:64055744-64055763 None:intergenic 55.0%
AAAATGTAGGCAGACGGGGC+AGG - chr5_3:64055826-64055845 Msa0824640:CDS 55.0%
ACTGAACCTGGGTCACCACC+AGG - chr5_3:64052872-64052891 Msa0824640:three_prime_UTR 60.0%
! TGGAAACCTGGTGGTGACCC+AGG + chr5_3:64052881-64052900 None:intergenic 60.0%
ACCGCAGAGCCAAGGGAACA+AGG - chr5_3:64053861-64053880 Msa0824640:intron 60.0%
ACGACGACGACGAGGATGGT+GGG - chr5_3:64055561-64055580 Msa0824640:CDS 60.0%
TGACGACGACGACGACGACG+AGG - chr5_3:64055553-64055572 Msa0824640:CDS 65.0%
GACGACGACGACGACGAGGA+TGG - chr5_3:64055557-64055576 Msa0824640:CDS 65.0%
GACGACGACGACGAGGATGG+TGG - chr5_3:64055560-64055579 Msa0824640:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 64052854 64055935 64052854 ID=Msa0824640;Name=Msa0824640
chr5_3 mRNA 64052854 64055935 64052854 ID=Msa0824640-mRNA-1;Parent=Msa0824640;Name=Msa0824640-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|1|0.5|1|1|1|2|82|467
chr5_3 exon 64052854 64053288 64052854 ID=Msa0824640-mRNA-1:exon:19989;Parent=Msa0824640-mRNA-1
chr5_3 exon 64054885 64055935 64054885 ID=Msa0824640-mRNA-1:exon:19988;Parent=Msa0824640-mRNA-1
chr5_3 CDS 64054885 64055935 64054885 ID=Msa0824640-mRNA-1:cds;Parent=Msa0824640-mRNA-1
chr5_3 CDS 64052936 64053288 64052936 ID=Msa0824640-mRNA-1:cds;Parent=Msa0824640-mRNA-1
chr5_3 three_prime_UTR 64052854 64052935 64052854 ID=Msa0824640-mRNA-1:three_prime_utr;Parent=Msa0824640-mRNA-1
Gene Sequence

>Msa0824640

ATGAACATTCAACCCAAAACTGAACCTGGGTCACCACCAGGTTTCCATTCCACAAACCCTAACTACTTTGAAAAAATGAGTATTCATGAGCTTGTTATGGTGTTGCGTCGAACGTGTCAATGGGAAACTTTTGACAGTGTTGAAACTGTTTTGGAGAATAGGTATATGAGACTCAGAGAAGAGCTTCACCTGGAGAAACTCTCAAGGTTATACGCTGAGTCCGAGTTTAAGAAAAGAGAAGAGATTTGTGAAAAAGGGAAGAAAGTTCAAGAAAGTTATGAAGCACTTTTGAAAGAAGTTAAGGTAAATAGATTAGCTAATAGTGTTAGTATTGAAGAGCTAAGTAAGAAGAAGAATGAATTAGAGGGGGAAGTTGAGAAGTTGAAGAAAAAATGTGTTGATGATGGCAATGAAATTGATGTGTTAAGAAGAAAGAATGGTGAGCTAGAGGCTAAGATTTTGGAGTTGAGGAAGTTGAATGAAAAGAGGGTGGAGGATAATAATGAACTTGGTGTGTTGAGGAAAATGATTGGTAAATTGGAGCATGAAGTTTCGGAGCTGAGGAAATCGAAGAAGAAATGGTTAGATGATAGCAATGCTTTTGATGCGCTTAGGAATAAGGTTCGTGTATTGGAGGGTGATAAAAATGCTTTGGCTGGACTTGAGGTTAGAAATGGCGAGTTGAAGGAAACTATAAGTAGGTTGGGGAAAGAAAAGAGTAAGTTGGCTGATGAGAAACGTAAGATTGAGATATTACTTGGGTCCATGTACAAGAAATTTAGAGGACTGGTTGGAAGACTTTCGAGGTTGGAGGATGATACCAATCTTTTGAAGAGTGTAGGTGTCTCTGGTGGTGGTAGTAATGAGGGGAAGTCACCTGTTGATCCTATGGCTACTAATATTGAAGACAGAGATGAAGAGGATCTTCTTGACGATGAGTTCGGAAATGACACTGTTGAGGAGGCTGTCCCTGCTAATCACACTCTTGGAGTTGCTGCTAGTACTCAACCGCAGAGCCAAGGGAACAAGGATGTGCAAGGTTCATCATCAGCTAGTGGAAGAGTGAAACTGGATAAGAATATTGAGATCATATACCTTGATGATGACGACGACGACGACGACGAGGATGGTGGGTCTATGTCTCAAGGAGGTCATGAAAAGAAAGCTGTTTTTGGAATTGCTGTGAAGAATGAGGTTCCAAGTCCATCCGTGGCAACACAACAAAAAAGCAAATTTCCCAATGCAGCTGACACTGTTAAAAGAAAATTTTCTTTGAGCGACATTGAAATCTCCAGTGCCAGTTCTTCATCCTCCGACGATTCGTCATTTCTCGATGATCTTCCAATAAGGTCTGTGGTATCACTTGAAAGAAGAAAAAAATGTAGGCAGACGGGGCAGGACTGA

Protein sequence

>Msa0824640

MNIQPKTEPGSPPGFHSTNPNYFEKMSIHELVMVLRRTCQWETFDSVETVLENRYMRLREELHLEKLSRLYAESEFKKREEICEKGKKVQESYEALLKEVKVNRLANSVSIEELSKKKNELEGEVEKLKKKCVDDGNEIDVLRRKNGELEAKILELRKLNEKRVEDNNELGVLRKMIGKLEHEVSELRKSKKKWLDDSNAFDALRNKVRVLEGDKNALAGLEVRNGELKETISRLGKEKSKLADEKRKIEILLGSMYKKFRGLVGRLSRLEDDTNLLKSVGVSGGGSNEGKSPVDPMATNIEDRDEEDLLDDEFGNDTVEEAVPANHTLGVAASTQPQSQGNKDVQGSSSASGRVKLDKNIEIIYLDDDDDDDDEDGGSMSQGGHEKKAVFGIAVKNEVPSPSVATQQKSKFPNAADTVKRKFSLSDIEISSASSSSSDDSSFLDDLPIRSVVSLERRKKCRQTGQD*