AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0864010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864010 MtrunA17_Chr5g0445881 85.892 482 46 5 1 467 1 475 0.0 685
Msa0864010 MtrunA17_Chr5g0445771 52.481 524 147 9 3 451 1 497 3.41e-143 419
Msa0864010 MtrunA17_Chr5g0445871 83.871 217 23 2 256 466 1 211 4.76e-102 303
Msa0864010 MtrunA17_Chr5g0445831 46.575 438 119 7 1 351 1 410 7.57e-102 311
Msa0864010 MtrunA17_Chr5g0445811 50.278 360 98 9 1 357 1 282 8.77e-89 272
Msa0864010 MtrunA17_Chr5g0446181 44.170 446 132 14 1 425 1 350 4.30e-77 245
Msa0864010 MtrunA17_Chr5g0445861 42.045 440 150 12 1 351 1 424 1.51e-72 235
Msa0864010 MtrunA17_Chr5g0445961 36.982 338 155 9 1 289 1 329 5.97e-37 142
Msa0864010 MtrunA17_Chr5g0445961 43.662 213 88 4 99 299 213 405 6.71e-36 139
Msa0864010 MtrunA17_Chr5g0446171 40.394 203 80 4 1 193 1 172 3.65e-28 112
Msa0864010 MtrunA17_Chr5g0445821 55.455 110 39 3 353 460 5 106 1.01e-21 90.1
Msa0864010 MtrunA17_Chr5g0446191 48.031 127 54 3 22 136 10 136 1.68e-20 94.4
Msa0864010 MtrunA17_Chr5g0446231 48.760 121 52 2 26 136 1 121 2.42e-20 94.0
Msa0864010 MtrunA17_Chr5g0413371 47.287 129 65 2 23 150 3 129 3.15e-20 93.6
Msa0864010 MtrunA17_Chr5g0445801 51.818 110 46 3 353 460 5 109 3.15e-18 80.1
Msa0864010 MtrunA17_Chr5g0445851 60.714 84 30 1 380 460 29 112 3.82e-14 68.6
Msa0864010 MtrunA17_Chr1g0185261 30.116 259 81 7 70 320 26 192 2.45e-12 66.2
Msa0864010 MtrunA17_Chr5g0434161 47.222 72 35 1 133 204 19 87 1.21e-11 61.2
Msa0864010 MtrunA17_Chr5g0434161 47.436 78 41 0 104 181 18 95 9.28e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 101 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGAGATTTGTGAAAA+AGG 0.177538 5_4:+64142402 Msa0864010:CDS
GAGGAAAATGATTGGTAAAT+TGG 0.230977 5_4:+64142686 Msa0864010:CDS
AGTGATACCACAGACCTTAT+TGG 0.263574 5_4:-64145117 None:intergenic
TGAGCTAGAGGCTAAGATTT+TGG 0.268067 5_4:+64142608 Msa0864010:CDS
TGGTGACCCAGGTTCAGTTT+TGG 0.318302 5_4:-64142181 None:intergenic
CTTGCACATCCTTGTTCCCT+TGG 0.337027 5_4:-64143184 None:intergenic
AACTATTAGCCAAAGTAATT+AGG 0.340914 5_4:+64145179 Msa0864010:exon
TAAGAAGAAGAATGAATTAG+AGG 0.349069 5_4:+64142512 Msa0864010:CDS
TGACAGTGTTGAAACTGTTT+TGG 0.353564 5_4:+64142299 Msa0864010:CDS
CGTAAGATTGAGATATTACT+TGG 0.360048 5_4:+64142906 Msa0864010:CDS
TAGGAATAAGGTTCGTGTAT+TGG 0.381629 5_4:+64142779 Msa0864010:CDS
AGCTAGTGGAAGAGTGAAAC+TGG 0.389413 5_4:+64144825 Msa0864010:intron
TTCAAAGTAGTTAGGGTTTG+TGG 0.390284 5_4:-64142217 None:intergenic
TTCTCGATGATCTTCCAATA+AGG 0.392872 5_4:+64145103 Msa0864010:CDS
TTTAACAGTGTCAGCTGCAT+TGG 0.395113 5_4:-64145013 None:intergenic
TAAATTGGAGCATGAAGTTT+CGG 0.399727 5_4:+64142701 Msa0864010:CDS
TTGAAGAGTGTAGGTGTCTC+TGG 0.402552 5_4:+64142996 Msa0864010:CDS
AAGGAAACTATAAGTAGGTT+GGG 0.404054 5_4:+64142852 Msa0864010:CDS
TCCTCTAAATTTCTTGTACA+TGG 0.413034 5_4:-64142931 None:intergenic
GAAGGAAACTATAAGTAGGT+TGG 0.440805 5_4:+64142851 Msa0864010:CDS
GTCCCTGCTAATCACACTCT+TGG 0.441563 5_4:+64143134 Msa0864010:CDS
ATGTTATAGCCTAATTACTT+TGG 0.444045 5_4:-64145188 None:intergenic
TCCATGTACAAGAAATTTAG+AGG 0.446165 5_4:+64142930 Msa0864010:CDS
GATCTTCTTGACGATGAGTT+CGG 0.446687 5_4:+64143089 Msa0864010:CDS
TGAGGAAATCGAAGAAGAAA+TGG 0.446716 5_4:+64142727 Msa0864010:CDS
TTAACAGTGTCAGCTGCATT+GGG 0.447220 5_4:-64145012 None:intergenic
TTAGTAGCCATAGGATCAAC+AGG 0.451539 5_4:-64143044 None:intergenic
ACCTACACTCTTCAAAAGAT+TGG 0.453769 5_4:-64142988 None:intergenic
AGTAGTTAGGGTTTGTGGAA+TGG 0.460464 5_4:-64142212 None:intergenic
ACTCCAAGAGTGTGATTAGC+AGG 0.461799 5_4:-64143137 None:intergenic
GCTGGACTTGAGGTTAGAAA+TGG 0.469464 5_4:+64142822 Msa0864010:CDS
CTCTGGTGGTGGTAGTAATG+AGG 0.471140 5_4:+64143013 Msa0864010:CDS
GGTTAGAAATGGCGAGTTGA+AGG 0.474088 5_4:+64142833 Msa0864010:CDS
ATCGTCGGAGGATGAAGAAC+TGG 0.476363 5_4:-64145073 None:intergenic
GAAGTCACCTGTTGATCCTA+TGG 0.481237 5_4:+64143037 Msa0864010:CDS
AAGAAGAAGAATGAATTAGA+GGG 0.483632 5_4:+64142513 Msa0864010:CDS
GGTTGGAAGACTTTCGAGGT+TGG 0.484020 5_4:+64142956 Msa0864010:CDS
GAGTATTCATGAGCTTGTTA+TGG 0.485224 5_4:+64142245 Msa0864010:CDS
GGAGGATGAAGAACTGGCAC+TGG 0.495184 5_4:-64145067 None:intergenic
GATGTGCAAGGTTCATCATC+AGG 0.498818 5_4:+64143197 Msa0864010:CDS
AAGAAATTTAGAGGACTGGT+TGG 0.504312 5_4:+64142939 Msa0864010:CDS
GTGGAGGATAATAATGAACT+TGG 0.505091 5_4:+64142657 Msa0864010:CDS
AAATGCTTTGGCTGGACTTG+AGG 0.508557 5_4:+64142812 Msa0864010:CDS
GTACAAGAAATTTAGAGGAC+TGG 0.508835 5_4:+64142935 Msa0864010:CDS
TGTGTTGCCACGGATGGACT+TGG 0.510680 5_4:-64144973 None:intergenic
GGGTTTGTGGAATGGAAACC+TGG 0.511624 5_4:-64142204 None:intergenic
AAAAGGTCATGTGGCTAACA+AGG 0.513200 5_4:-64145222 None:intergenic
ATTCAACCCAAAACTGAACC+TGG 0.515291 5_4:+64142174 Msa0864010:CDS
TGAGGAAGTTGAATGAAAAG+AGG 0.516495 5_4:+64142634 Msa0864010:CDS
TGGAAGACTTTCGAGGTTGG+AGG 0.517961 5_4:+64142959 Msa0864010:CDS
TGTTGCGTCGAACGTGTCAA+TGG 0.530627 5_4:+64142268 Msa0864010:CDS
GAATAAGGTTCGTGTATTGG+AGG 0.532923 5_4:+64142782 Msa0864010:CDS
GACTGGTTGGAAGACTTTCG+AGG 0.538485 5_4:+64142952 Msa0864010:CDS
AGTGTAGGTGTCTCTGGTGG+TGG 0.543623 5_4:+64143002 Msa0864010:CDS
AGTACTCAACCGCAGAGCCA+AGG 0.547766 5_4:+64143167 Msa0864010:CDS
GGGGAAAGAAAAGAGTAAGT+TGG 0.547900 5_4:+64142872 Msa0864010:CDS
TATTGAAGACAGAGATGAAG+AGG 0.548764 5_4:+64143067 Msa0864010:CDS
TGGAAACCTGGTGGTGACCC+AGG 0.549157 5_4:-64142192 None:intergenic
TCTGGTGGTGGTAGTAATGA+GGG 0.553890 5_4:+64143014 Msa0864010:CDS
GAGGAAGTTGAATGAAAAGA+GGG 0.555930 5_4:+64142635 Msa0864010:CDS
AAAATGTAGGCAGACGGGGC+AGG 0.558347 5_4:+64145152 Msa0864010:CDS
TCCTTGTTCCCTTGGCTCTG+CGG 0.558940 5_4:-64143176 None:intergenic
ACTCAGAGAAGAGCTTCACC+TGG 0.560115 5_4:+64142338 Msa0864010:CDS
AAGAAAGAATGGTGAGCTAG+AGG 0.561807 5_4:+64142596 Msa0864010:CDS
AGCATGAAGTTTCGGAGCTG+AGG 0.564279 5_4:+64142709 Msa0864010:CDS
AGAAGAAGAATGAATTAGAG+GGG 0.569093 5_4:+64142514 Msa0864010:CDS
GGTGTGTTGAGGAAAATGAT+TGG 0.569444 5_4:+64142678 Msa0864010:CDS
CGTCGTCGTCGTCATCATCA+AGG 0.575320 5_4:-64144870 None:intergenic
AATAAGGTTCGTGTATTGGA+GGG 0.576354 5_4:+64142783 Msa0864010:CDS
ACCGCAGAGCCAAGGGAACA+AGG 0.578207 5_4:+64143175 Msa0864010:CDS
TGGAATTGCTGTGAAGAATG+AGG 0.583460 5_4:+64144948 Msa0864010:CDS
ACTGAACCTGGGTCACCACC+AGG 0.584855 5_4:+64142186 Msa0864010:CDS
AGGAAACTATAAGTAGGTTG+GGG 0.587533 5_4:+64142853 Msa0864010:CDS
GAAGTTGAATGAAAAGAGGG+TGG 0.590744 5_4:+64142638 Msa0864010:CDS
GTTGAATGAAAAGAGGGTGG+AGG 0.590912 5_4:+64142641 Msa0864010:CDS
AGTTGAAGGAAACTATAAGT+AGG 0.591344 5_4:+64142847 Msa0864010:CDS
GTTGCGTCGAACGTGTCAAT+GGG 0.592352 5_4:+64142269 Msa0864010:CDS
GATGTGTTAAGAAGAAAGAA+TGG 0.593843 5_4:+64142585 Msa0864010:CDS
ATCGAGAAATGACGAATCGT+CGG 0.598864 5_4:-64145088 None:intergenic
GTACTCAACCGCAGAGCCAA+GGG 0.604360 5_4:+64143168 Msa0864010:CDS
GAAGAAGAATGAATTAGAGG+GGG 0.609017 5_4:+64142515 Msa0864010:CDS
GATGGTGGGTCTATGTCTCA+AGG 0.610890 5_4:+64144901 Msa0864010:CDS
ATAATGAACTTGGTGTGTTG+AGG 0.614106 5_4:+64142667 Msa0864010:CDS
CGGAAATGACACTGTTGAGG+AGG 0.614193 5_4:+64143109 Msa0864010:CDS
ATAACCTTGAGAGTTTCTCC+AGG 0.615756 5_4:-64142356 None:intergenic
GAGAAATGACGAATCGTCGG+AGG 0.623666 5_4:-64145085 None:intergenic
GACGACGACGACGAGGATGG+TGG 0.625192 5_4:+64144886 Msa0864010:CDS
ACGACGACGACGAGGATGGT+GGG 0.630206 5_4:+64144887 Msa0864010:CDS
TGATCTTCCAATAAGGTCTG+TGG 0.630656 5_4:+64145110 Msa0864010:CDS
TCTTCAATATTAGTAGCCAT+AGG 0.636021 5_4:-64143053 None:intergenic
CAAGGGAACAAGGATGTGCA+AGG 0.636506 5_4:+64143185 Msa0864010:CDS
TTCAACCCAAAACTGAACCT+GGG 0.639172 5_4:+64142175 Msa0864010:CDS
GTTCGGAAATGACACTGTTG+AGG 0.644475 5_4:+64143106 Msa0864010:CDS
TGAGGTTCCAAGTCCATCCG+TGG 0.647482 5_4:+64144966 Msa0864010:CDS
TTCACCTGGAGAAACTCTCA+AGG 0.655090 5_4:+64142352 Msa0864010:CDS
CTGGTGGTGGTAGTAATGAG+GGG 0.658244 5_4:+64143015 Msa0864010:CDS
CTCCAAGAGTGTGATTAGCA+GGG 0.666199 5_4:-64143136 None:intergenic
GTAAGATTGAGATATTACTT+GGG 0.675489 5_4:+64142907 Msa0864010:CDS
AAGAGTGTAGGTGTCTCTGG+TGG 0.688326 5_4:+64142999 Msa0864010:CDS
GGTGGGTCTATGTCTCAAGG+AGG 0.743834 5_4:+64144904 Msa0864010:CDS
TTTGTGGAATGGAAACCTGG+TGG 0.770855 5_4:-64142201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAAACTTATTTTCTTT+TGG - chr5_4:64144536-64144555 None:intergenic 10.0%
!!! GAAAAGTTACTAATATTTTT+GGG - chr5_4:64143826-64143845 None:intergenic 15.0%
!!! AGAAAAGTTACTAATATTTT+TGG - chr5_4:64143827-64143846 None:intergenic 15.0%
!! TTCAAAGTATAAACAATAAA+TGG - chr5_4:64144152-64144171 None:intergenic 15.0%
!!! TCATTTTTTCAAAGTAGTTA+GGG - chr5_4:64142227-64142246 None:intergenic 20.0%
!! CTCTAATTTCAAATTATGAT+GGG - chr5_4:64143400-64143419 None:intergenic 20.0%
!! ACTCTAATTTCAAATTATGA+TGG - chr5_4:64143401-64143420 None:intergenic 20.0%
!! AAGATAAACTCAATTAAAAC+CGG + chr5_4:64143439-64143458 Msa0864010:intron 20.0%
!!! ATTAGTAACTTTTCTAGAAT+AGG + chr5_4:64143832-64143851 Msa0864010:intron 20.0%
!! GTGTAAAATAATAACTTTCT+AGG - chr5_4:64144207-64144226 None:intergenic 20.0%
!!! TTAAACTTATTTTCTTTTGG+TGG - chr5_4:64144533-64144552 None:intergenic 20.0%
!! AAATAAAGTGAAAATCTTGT+TGG + chr5_4:64144560-64144579 Msa0864010:intron 20.0%
!! TTGAAAGAAGAAAAAAATGT+AGG + chr5_4:64145139-64145158 Msa0864010:CDS 20.0%
!! TTTAAAAAAAAAAGGTCATG+TGG - chr5_4:64145234-64145253 None:intergenic 20.0%
!!! CTCATTTTTTCAAAGTAGTT+AGG - chr5_4:64142228-64142247 None:intergenic 25.0%
! TAAGAAGAAGAATGAATTAG+AGG + chr5_4:64142512-64142531 Msa0864010:CDS 25.0%
! AAGAAGAAGAATGAATTAGA+GGG + chr5_4:64142513-64142532 Msa0864010:CDS 25.0%
!! AAGAAAAAATGTGTTGATGA+TGG + chr5_4:64142552-64142571 Msa0864010:CDS 25.0%
! GTAAGATTGAGATATTACTT+GGG + chr5_4:64142907-64142926 Msa0864010:CDS 25.0%
! ATATTGAATTTACGTGTGAT+CGG + chr5_4:64143287-64143306 Msa0864010:intron 25.0%
! AAACAAGAAAATCATGTACA+AGG - chr5_4:64143346-64143365 None:intergenic 25.0%
!!! AAATTATGATGGGTAGTTAA+TGG - chr5_4:64143390-64143409 None:intergenic 25.0%
! AGATAAACTCAATTAAAACC+GGG + chr5_4:64143440-64143459 Msa0864010:intron 25.0%
!!! TCAAATAAATTTTGGTTCCA+GGG + chr5_4:64143651-64143670 Msa0864010:intron 25.0%
! TGGAAGATAAATTAATGAGA+CGG + chr5_4:64143752-64143771 Msa0864010:intron 25.0%
! AAACAATAAATGGTTTCAGA+AGG - chr5_4:64144142-64144161 None:intergenic 25.0%
! TGAAAATCTTGTTGGATTAT+GGG + chr5_4:64144568-64144587 Msa0864010:intron 25.0%
! AGAACAACAATATAAAAGAG+AGG - chr5_4:64144692-64144711 None:intergenic 25.0%
! AACTATTAGCCAAAGTAATT+AGG + chr5_4:64145179-64145198 Msa0864010:exon 25.0%
! ATGTTATAGCCTAATTACTT+TGG - chr5_4:64145191-64145210 None:intergenic 25.0%
!!! GTGGCTTGTTTAAAAAAAAA+AGG - chr5_4:64145242-64145261 None:intergenic 25.0%
!!! TTGAAACTGTTTTGGAGAAT+AGG + chr5_4:64142307-64142326 Msa0864010:CDS 30.0%
! CTCTTCTCTTTTCTTAAACT+CGG - chr5_4:64142391-64142410 None:intergenic 30.0%
AGAGAAGAGATTTGTGAAAA+AGG + chr5_4:64142402-64142421 Msa0864010:CDS 30.0%
GAGAAGAGATTTGTGAAAAA+GGG + chr5_4:64142403-64142422 Msa0864010:CDS 30.0%
!! AGCACTTTTGAAAGAAGTTA+AGG + chr5_4:64142449-64142468 Msa0864010:CDS 30.0%
AGAAGAAGAATGAATTAGAG+GGG + chr5_4:64142514-64142533 Msa0864010:CDS 30.0%
GATGTGTTAAGAAGAAAGAA+TGG + chr5_4:64142585-64142604 Msa0864010:CDS 30.0%
GAGGAAAATGATTGGTAAAT+TGG + chr5_4:64142686-64142705 Msa0864010:CDS 30.0%
TAAATTGGAGCATGAAGTTT+CGG + chr5_4:64142701-64142720 Msa0864010:CDS 30.0%
AGTTGAAGGAAACTATAAGT+AGG + chr5_4:64142847-64142866 Msa0864010:CDS 30.0%
AAGGAAACTATAAGTAGGTT+GGG + chr5_4:64142852-64142871 Msa0864010:CDS 30.0%
CGTAAGATTGAGATATTACT+TGG + chr5_4:64142906-64142925 Msa0864010:CDS 30.0%
TCCATGTACAAGAAATTTAG+AGG + chr5_4:64142930-64142949 Msa0864010:CDS 30.0%
TCCTCTAAATTTCTTGTACA+TGG - chr5_4:64142934-64142953 None:intergenic 30.0%
TCTTCAATATTAGTAGCCAT+AGG - chr5_4:64143056-64143075 None:intergenic 30.0%
AAATGTTAGATCAGATTGCT+AGG + chr5_4:64143312-64143331 Msa0864010:intron 30.0%
CAATTAAAACCGGGATATTA+TGG + chr5_4:64143449-64143468 Msa0864010:intron 30.0%
! ATCTGATTTTCCAATGGAAA+TGG + chr5_4:64143600-64143619 Msa0864010:intron 30.0%
! GTGGAACCTCAAATAAATTT+TGG + chr5_4:64143643-64143662 Msa0864010:intron 30.0%
CTGGAACCAAAATTTATTTG+AGG - chr5_4:64143652-64143671 None:intergenic 30.0%
!!! CTCAAATAAATTTTGGTTCC+AGG + chr5_4:64143650-64143669 Msa0864010:intron 30.0%
! ATCATTCTTTTGACCTCTTT+AGG + chr5_4:64144041-64144060 Msa0864010:intron 30.0%
!!! GAAAATCGTTTTAGGAAACA+TGG - chr5_4:64144231-64144250 None:intergenic 30.0%
! TCTTGGTTGAAAATCGTTTT+AGG - chr5_4:64144239-64144258 None:intergenic 30.0%
AAAAAGGGACTTAATTGTTG+TGG + chr5_4:64144303-64144322 Msa0864010:intron 30.0%
ACATAAGAAAGAAACAAGAG+TGG + chr5_4:64144418-64144437 Msa0864010:intron 30.0%
!! ACTTATTTTCTTTTGGTGGA+AGG - chr5_4:64144529-64144548 None:intergenic 30.0%
GTGAAAATCTTGTTGGATTA+TGG + chr5_4:64144567-64144586 Msa0864010:intron 30.0%
!! CATGAAAAGAAAGCTGTTTT+TGG + chr5_4:64144928-64144947 Msa0864010:CDS 30.0%
AAGAAAAAAATGTAGGCAGA+CGG + chr5_4:64145146-64145165 Msa0864010:CDS 30.0%
TTCAAAGTAGTTAGGGTTTG+TGG - chr5_4:64142220-64142239 None:intergenic 35.0%
!! GAGTATTCATGAGCTTGTTA+TGG + chr5_4:64142245-64142264 Msa0864010:CDS 35.0%
!! TGACAGTGTTGAAACTGTTT+TGG + chr5_4:64142299-64142318 Msa0864010:CDS 35.0%
GAAGAAGAATGAATTAGAGG+GGG + chr5_4:64142515-64142534 Msa0864010:CDS 35.0%
TGAGGAAGTTGAATGAAAAG+AGG + chr5_4:64142634-64142653 Msa0864010:CDS 35.0%
GAGGAAGTTGAATGAAAAGA+GGG + chr5_4:64142635-64142654 Msa0864010:CDS 35.0%
GTGGAGGATAATAATGAACT+TGG + chr5_4:64142657-64142676 Msa0864010:CDS 35.0%
!! ATAATGAACTTGGTGTGTTG+AGG + chr5_4:64142667-64142686 Msa0864010:CDS 35.0%
TGAGGAAATCGAAGAAGAAA+TGG + chr5_4:64142727-64142746 Msa0864010:CDS 35.0%
! TTTTGATGCGCTTAGGAATA+AGG + chr5_4:64142767-64142786 Msa0864010:CDS 35.0%
TAGGAATAAGGTTCGTGTAT+TGG + chr5_4:64142779-64142798 Msa0864010:CDS 35.0%
AATAAGGTTCGTGTATTGGA+GGG + chr5_4:64142783-64142802 Msa0864010:CDS 35.0%
GAAGGAAACTATAAGTAGGT+TGG + chr5_4:64142851-64142870 Msa0864010:CDS 35.0%
AGGAAACTATAAGTAGGTTG+GGG + chr5_4:64142853-64142872 Msa0864010:CDS 35.0%
GTACAAGAAATTTAGAGGAC+TGG + chr5_4:64142935-64142954 Msa0864010:CDS 35.0%
! AAGAAATTTAGAGGACTGGT+TGG + chr5_4:64142939-64142958 Msa0864010:CDS 35.0%
!! ACCAATCTTTTGAAGAGTGT+AGG + chr5_4:64142987-64143006 Msa0864010:CDS 35.0%
ACCTACACTCTTCAAAAGAT+TGG - chr5_4:64142991-64143010 None:intergenic 35.0%
TATTGAAGACAGAGATGAAG+AGG + chr5_4:64143067-64143086 Msa0864010:CDS 35.0%
AAGGTTCATCATCAGGTATA+TGG + chr5_4:64143204-64143223 Msa0864010:intron 35.0%
ACCGGGATATTATGGTAATA+TGG + chr5_4:64143457-64143476 Msa0864010:intron 35.0%
CCCATATTACCATAATATCC+CGG - chr5_4:64143461-64143480 None:intergenic 35.0%
CCGGGATATTATGGTAATAT+GGG + chr5_4:64143458-64143477 Msa0864010:intron 35.0%
! TGAATTGTGACTTTTGATGC+TGG + chr5_4:64143496-64143515 Msa0864010:intron 35.0%
! AGCTGAATCTGATTTTCCAA+TGG + chr5_4:64143594-64143613 Msa0864010:intron 35.0%
! AATGCTACTTCCATTTCCAT+TGG - chr5_4:64143613-64143632 None:intergenic 35.0%
!!! AATAAATTTTGGTTCCAGGG+AGG + chr5_4:64143654-64143673 Msa0864010:intron 35.0%
CATGTCTTGTCAATTGCATA+TGG - chr5_4:64143690-64143709 None:intergenic 35.0%
AACTCTCAAGCCTGAAATTA+GGG - chr5_4:64143780-64143799 None:intergenic 35.0%
ACCAATTGTGTCATGATTGT+TGG + chr5_4:64143883-64143902 Msa0864010:intron 35.0%
ACCAACAATCATGACACAAT+TGG - chr5_4:64143887-64143906 None:intergenic 35.0%
! TGAATGAGAGTGGTAATGTA+GGG + chr5_4:64143981-64144000 Msa0864010:intron 35.0%
ACTTCTAACCTAGAAAGAGA+TGG + chr5_4:64144010-64144029 Msa0864010:intron 35.0%
AACGAGATATGTTCCTAAAG+AGG - chr5_4:64144057-64144076 None:intergenic 35.0%
AACTTTCTAGGTAAGAAGCA+AGG - chr5_4:64144195-64144214 None:intergenic 35.0%
! TGTCATAAGTGCTGTTGAAA+AGG + chr5_4:64144347-64144366 Msa0864010:intron 35.0%
CTCATCTGAATGTTCATCTT+TGG - chr5_4:64144491-64144510 None:intergenic 35.0%
!!! TTGGTGGAAGGTGTTTTAAT+AGG - chr5_4:64144517-64144536 None:intergenic 35.0%
! TTGGATTATGGGTTGAAGTT+TGG + chr5_4:64144579-64144598 Msa0864010:intron 35.0%
! ATTATGGGTTGAAGTTTGGA+AGG + chr5_4:64144583-64144602 Msa0864010:intron 35.0%
CAGCAGAAACTTGGAAAATA+AGG - chr5_4:64144735-64144754 None:intergenic 35.0%
!! CTTATTTTCCAAGTTTCTGC+TGG + chr5_4:64144733-64144752 Msa0864010:intron 35.0%
ATAATACTCCAGCAGAAACT+TGG - chr5_4:64144744-64144763 None:intergenic 35.0%
! TGCTGGAGTATTATCATGTT+TGG + chr5_4:64144750-64144769 Msa0864010:intron 35.0%
! TCTCTTTTTGTATCAGCTAG+TGG + chr5_4:64144811-64144830 Msa0864010:intron 35.0%
TTCTCGATGATCTTCCAATA+AGG + chr5_4:64145103-64145122 Msa0864010:CDS 35.0%
AGAAAAAAATGTAGGCAGAC+GGG + chr5_4:64145147-64145166 Msa0864010:CDS 35.0%
ATTCAACCCAAAACTGAACC+TGG + chr5_4:64142174-64142193 Msa0864010:CDS 40.0%
TTCAACCCAAAACTGAACCT+GGG + chr5_4:64142175-64142194 Msa0864010:CDS 40.0%
AGTAGTTAGGGTTTGTGGAA+TGG - chr5_4:64142215-64142234 None:intergenic 40.0%
ATAACCTTGAGAGTTTCTCC+AGG - chr5_4:64142359-64142378 None:intergenic 40.0%
AAGAAAGAATGGTGAGCTAG+AGG + chr5_4:64142596-64142615 Msa0864010:CDS 40.0%
! TGAGCTAGAGGCTAAGATTT+TGG + chr5_4:64142608-64142627 Msa0864010:CDS 40.0%
!!! AGGCTAAGATTTTGGAGTTG+AGG + chr5_4:64142616-64142635 Msa0864010:CDS 40.0%
GAAGTTGAATGAAAAGAGGG+TGG + chr5_4:64142638-64142657 Msa0864010:CDS 40.0%
GGTGTGTTGAGGAAAATGAT+TGG + chr5_4:64142678-64142697 Msa0864010:CDS 40.0%
GAATAAGGTTCGTGTATTGG+AGG + chr5_4:64142782-64142801 Msa0864010:CDS 40.0%
GGAGGGTGATAAAAATGCTT+TGG + chr5_4:64142800-64142819 Msa0864010:CDS 40.0%
GGTGATAAAAATGCTTTGGC+TGG + chr5_4:64142804-64142823 Msa0864010:CDS 40.0%
GGGGAAAGAAAAGAGTAAGT+TGG + chr5_4:64142872-64142891 Msa0864010:CDS 40.0%
TTAGTAGCCATAGGATCAAC+AGG - chr5_4:64143047-64143066 None:intergenic 40.0%
GATCTTCTTGACGATGAGTT+CGG + chr5_4:64143089-64143108 Msa0864010:CDS 40.0%
TGTTAGATCAGATTGCTAGG+TGG + chr5_4:64143315-64143334 Msa0864010:intron 40.0%
TGGTAATATGGGTCTCTAGA+TGG + chr5_4:64143469-64143488 Msa0864010:intron 40.0%
AAGATGAATGAGCCTTAGAG+AGG - chr5_4:64143528-64143547 None:intergenic 40.0%
!! CTTGCTTAGGTTGAGTAACA+TGG - chr5_4:64143555-64143574 None:intergenic 40.0%
!! AGAGAGTCAATAGCTTGCTT+AGG - chr5_4:64143568-64143587 None:intergenic 40.0%
ACATGCTGAGAAAGCTACTT+TGG + chr5_4:64143732-64143751 Msa0864010:intron 40.0%
CAACTCTCAAGCCTGAAATT+AGG - chr5_4:64143781-64143800 None:intergenic 40.0%
TGTGTCATGATTGTTGGTCA+AGG + chr5_4:64143889-64143908 Msa0864010:intron 40.0%
GAAAGAGTAGTGAATGAGAG+TGG + chr5_4:64143971-64143990 Msa0864010:intron 40.0%
! GTGAATGAGAGTGGTAATGT+AGG + chr5_4:64143980-64143999 Msa0864010:intron 40.0%
! GAATGAGAGTGGTAATGTAG+GGG + chr5_4:64143982-64144001 Msa0864010:intron 40.0%
CATTCACACCATCTCTTTCT+AGG - chr5_4:64144021-64144040 None:intergenic 40.0%
TGAAGTAGCAAAACCAGCAA+GGG + chr5_4:64144272-64144291 Msa0864010:intron 40.0%
TGTTGAAAAGGAAGTCAGGA+AGG + chr5_4:64144359-64144378 Msa0864010:intron 40.0%
AGAAACAAGAGTGGTAGTCA+TGG + chr5_4:64144427-64144446 Msa0864010:intron 40.0%
GAGTGGTAGTCATGGTTAAA+TGG + chr5_4:64144435-64144454 Msa0864010:intron 40.0%
TGGAATTGCTGTGAAGAATG+AGG + chr5_4:64144948-64144967 Msa0864010:CDS 40.0%
!!! GCTTTTTTGTTGTGTTGCCA+CGG - chr5_4:64144986-64145005 None:intergenic 40.0%
TTAACAGTGTCAGCTGCATT+GGG - chr5_4:64145015-64145034 None:intergenic 40.0%
TTTAACAGTGTCAGCTGCAT+TGG - chr5_4:64145016-64145035 None:intergenic 40.0%
ATCGAGAAATGACGAATCGT+CGG - chr5_4:64145091-64145110 None:intergenic 40.0%
TGATCTTCCAATAAGGTCTG+TGG + chr5_4:64145110-64145129 Msa0864010:CDS 40.0%
AGTGATACCACAGACCTTAT+TGG - chr5_4:64145120-64145139 None:intergenic 40.0%
GAAAAAAATGTAGGCAGACG+GGG + chr5_4:64145148-64145167 Msa0864010:CDS 40.0%
AAAAGGTCATGTGGCTAACA+AGG - chr5_4:64145225-64145244 None:intergenic 40.0%
TTTGTGGAATGGAAACCTGG+TGG - chr5_4:64142204-64142223 None:intergenic 45.0%
TTCACCTGGAGAAACTCTCA+AGG + chr5_4:64142352-64142371 Msa0864010:CDS 45.0%
GTTGAATGAAAAGAGGGTGG+AGG + chr5_4:64142641-64142660 Msa0864010:CDS 45.0%
! GCAATGCTTTTGATGCGCTT+AGG + chr5_4:64142760-64142779 Msa0864010:CDS 45.0%
AAATGCTTTGGCTGGACTTG+AGG + chr5_4:64142812-64142831 Msa0864010:CDS 45.0%
GCTGGACTTGAGGTTAGAAA+TGG + chr5_4:64142822-64142841 Msa0864010:CDS 45.0%
! GGTTAGAAATGGCGAGTTGA+AGG + chr5_4:64142833-64142852 Msa0864010:CDS 45.0%
! TTGAAGAGTGTAGGTGTCTC+TGG + chr5_4:64142996-64143015 Msa0864010:CDS 45.0%
!! TCTGGTGGTGGTAGTAATGA+GGG + chr5_4:64143014-64143033 Msa0864010:CDS 45.0%
GAAGTCACCTGTTGATCCTA+TGG + chr5_4:64143037-64143056 Msa0864010:CDS 45.0%
GTTCGGAAATGACACTGTTG+AGG + chr5_4:64143106-64143125 Msa0864010:CDS 45.0%
! CTCCAAGAGTGTGATTAGCA+GGG - chr5_4:64143139-64143158 None:intergenic 45.0%
! ACTCCAAGAGTGTGATTAGC+AGG - chr5_4:64143140-64143159 None:intergenic 45.0%
GATGTGCAAGGTTCATCATC+AGG + chr5_4:64143197-64143216 Msa0864010:CDS 45.0%
GATCAGATTGCTAGGTGGAT+TGG + chr5_4:64143320-64143339 Msa0864010:intron 45.0%
!! TGCTGGTTTCTTCCTCTCTA+AGG + chr5_4:64143513-64143532 Msa0864010:intron 45.0%
!! AGTAGCATTGACGTGAACTG+TGG + chr5_4:64143624-64143643 Msa0864010:intron 45.0%
TGGTCTACAGTCAGTTCTCT+AGG - chr5_4:64143867-64143886 None:intergenic 45.0%
TTGGTCAAGGCTCAAGAAAG+TGG + chr5_4:64143902-64143921 Msa0864010:intron 45.0%
AAGAAAGTGGTTGAGATGCC+AGG + chr5_4:64143915-64143934 Msa0864010:intron 45.0%
AGAAAGTGGTTGAGATGCCA+GGG + chr5_4:64143916-64143935 Msa0864010:intron 45.0%
TCAACCAAGATGCTCTCACT+TGG + chr5_4:64144249-64144268 Msa0864010:intron 45.0%
!! TTCACCAAGTGAGAGCATCT+TGG - chr5_4:64144256-64144275 None:intergenic 45.0%
GTGAAGTAGCAAAACCAGCA+AGG + chr5_4:64144271-64144290 Msa0864010:intron 45.0%
! TTTTTCGCTAATGCCCTTGC+TGG - chr5_4:64144288-64144307 None:intergenic 45.0%
!! AGCAAGGGCATTAGCGAAAA+AGG + chr5_4:64144287-64144306 Msa0864010:intron 45.0%
!! GCAAGGGCATTAGCGAAAAA+GGG + chr5_4:64144288-64144307 Msa0864010:intron 45.0%
! GTGCTGTTGAAAAGGAAGTC+AGG + chr5_4:64144355-64144374 Msa0864010:intron 45.0%
GGTTGAAGTTTGGAAGGTCA+TGG + chr5_4:64144589-64144608 Msa0864010:intron 45.0%
ACACTCTAGGTTCGGCTAAA+AGG - chr5_4:64144644-64144663 None:intergenic 45.0%
AGCTAGTGGAAGAGTGAAAC+TGG + chr5_4:64144825-64144844 Msa0864010:intron 45.0%
!! TTTTGTTGTGTTGCCACGGA+TGG - chr5_4:64144982-64145001 None:intergenic 45.0%
! GGTGACCCAGGTTCAGTTTT+GGG - chr5_4:64142183-64142202 None:intergenic 50.0%
! TGGTGACCCAGGTTCAGTTT+TGG - chr5_4:64142184-64142203 None:intergenic 50.0%
GGGTTTGTGGAATGGAAACC+TGG - chr5_4:64142207-64142226 None:intergenic 50.0%
TGTTGCGTCGAACGTGTCAA+TGG + chr5_4:64142268-64142287 Msa0864010:CDS 50.0%
GTTGCGTCGAACGTGTCAAT+GGG + chr5_4:64142269-64142288 Msa0864010:CDS 50.0%
ACTCAGAGAAGAGCTTCACC+TGG + chr5_4:64142338-64142357 Msa0864010:CDS 50.0%
AGCATGAAGTTTCGGAGCTG+AGG + chr5_4:64142709-64142728 Msa0864010:CDS 50.0%
! GACTGGTTGGAAGACTTTCG+AGG + chr5_4:64142952-64142971 Msa0864010:CDS 50.0%
GGTTGGAAGACTTTCGAGGT+TGG + chr5_4:64142956-64142975 Msa0864010:CDS 50.0%
TGGAAGACTTTCGAGGTTGG+AGG + chr5_4:64142959-64142978 Msa0864010:CDS 50.0%
! AAGAGTGTAGGTGTCTCTGG+TGG + chr5_4:64142999-64143018 Msa0864010:CDS 50.0%
!! CTCTGGTGGTGGTAGTAATG+AGG + chr5_4:64143013-64143032 Msa0864010:CDS 50.0%
!! CTGGTGGTGGTAGTAATGAG+GGG + chr5_4:64143015-64143034 Msa0864010:CDS 50.0%
CGGAAATGACACTGTTGAGG+AGG + chr5_4:64143109-64143128 Msa0864010:CDS 50.0%
GTCCCTGCTAATCACACTCT+TGG + chr5_4:64143134-64143153 Msa0864010:CDS 50.0%
CTTGCACATCCTTGTTCCCT+TGG - chr5_4:64143187-64143206 None:intergenic 50.0%
CAAGGGAACAAGGATGTGCA+AGG + chr5_4:64143185-64143204 Msa0864010:CDS 50.0%
ATGGCGAAGAAAAACCTCCC+TGG - chr5_4:64143671-64143690 None:intergenic 50.0%
TGAGACGGAGCCCTAATTTC+AGG + chr5_4:64143767-64143786 Msa0864010:intron 50.0%
TCAGGCTTGAGAGTTGAGAC+AGG + chr5_4:64143785-64143804 Msa0864010:intron 50.0%
CAGGCTTGAGAGTTGAGACA+GGG + chr5_4:64143786-64143805 Msa0864010:intron 50.0%
TTGAGATGCCAGGGTCTAGT+GGG + chr5_4:64143925-64143944 Msa0864010:intron 50.0%
! TGAGAGTGGTAATGTAGGGG+AGG + chr5_4:64143985-64144004 Msa0864010:intron 50.0%
CAGACGAGACACTCTAGGTT+CGG - chr5_4:64144652-64144671 None:intergenic 50.0%
! AACCTAGAGTGTCTCGTCTG+AGG + chr5_4:64144652-64144671 Msa0864010:intron 50.0%
AACCTCAGACGAGACACTCT+AGG - chr5_4:64144657-64144676 None:intergenic 50.0%
!! GATGGTGGGTCTATGTCTCA+AGG + chr5_4:64144901-64144920 Msa0864010:CDS 50.0%
ATCGTCGGAGGATGAAGAAC+TGG - chr5_4:64145076-64145095 None:intergenic 50.0%
GAGAAATGACGAATCGTCGG+AGG - chr5_4:64145088-64145107 None:intergenic 50.0%
AGTGTAGGTGTCTCTGGTGG+TGG + chr5_4:64143002-64143021 Msa0864010:CDS 55.0%
AGTACTCAACCGCAGAGCCA+AGG + chr5_4:64143167-64143186 Msa0864010:CDS 55.0%
GTACTCAACCGCAGAGCCAA+GGG + chr5_4:64143168-64143187 Msa0864010:CDS 55.0%
!! TCCTTGTTCCCTTGGCTCTG+CGG - chr5_4:64143179-64143198 None:intergenic 55.0%
TTGAGACAGGGCTGTGCTTC+AGG + chr5_4:64143798-64143817 Msa0864010:intron 55.0%
GTTGAGATGCCAGGGTCTAG+TGG + chr5_4:64143924-64143943 Msa0864010:intron 55.0%
AACTAGCTCCCACTAGACCC+TGG - chr5_4:64143936-64143955 None:intergenic 55.0%
CGTCGTCGTCGTCATCATCA+AGG - chr5_4:64144873-64144892 None:intergenic 55.0%
GGTGGGTCTATGTCTCAAGG+AGG + chr5_4:64144904-64144923 Msa0864010:CDS 55.0%
TGAGGTTCCAAGTCCATCCG+TGG + chr5_4:64144966-64144985 Msa0864010:CDS 55.0%
! TGTGTTGCCACGGATGGACT+TGG - chr5_4:64144976-64144995 None:intergenic 55.0%
GGAGGATGAAGAACTGGCAC+TGG - chr5_4:64145070-64145089 None:intergenic 55.0%
AAAATGTAGGCAGACGGGGC+AGG + chr5_4:64145152-64145171 Msa0864010:CDS 55.0%
ACTGAACCTGGGTCACCACC+AGG + chr5_4:64142186-64142205 Msa0864010:CDS 60.0%
! TGGAAACCTGGTGGTGACCC+AGG - chr5_4:64142195-64142214 None:intergenic 60.0%
ACCGCAGAGCCAAGGGAACA+AGG + chr5_4:64143175-64143194 Msa0864010:CDS 60.0%
ACGACGACGACGAGGATGGT+GGG + chr5_4:64144887-64144906 Msa0864010:CDS 60.0%
TGACGACGACGACGACGACG+AGG + chr5_4:64144879-64144898 Msa0864010:CDS 65.0%
GACGACGACGACGACGAGGA+TGG + chr5_4:64144883-64144902 Msa0864010:CDS 65.0%
GACGACGACGACGAGGATGG+TGG + chr5_4:64144886-64144905 Msa0864010:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 64142168 64145261 64142168 ID=Msa0864010;Name=Msa0864010
chr5_4 mRNA 64142168 64145261 64142168 ID=Msa0864010-mRNA-1;Parent=Msa0864010;Name=Msa0864010-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|1|0.5|1|1|1|2|82|467
chr5_4 exon 64142168 64143218 64142168 ID=Msa0864010-mRNA-1:exon:20177;Parent=Msa0864010-mRNA-1
chr5_4 exon 64144827 64145261 64144827 ID=Msa0864010-mRNA-1:exon:20178;Parent=Msa0864010-mRNA-1
chr5_4 CDS 64142168 64143218 64142168 ID=Msa0864010-mRNA-1:cds;Parent=Msa0864010-mRNA-1
chr5_4 CDS 64144827 64145179 64144827 ID=Msa0864010-mRNA-1:cds;Parent=Msa0864010-mRNA-1
chr5_4 three_prime_UTR 64145180 64145261 64145180 ID=Msa0864010-mRNA-1:three_prime_utr;Parent=Msa0864010-mRNA-1
Gene Sequence

>Msa0864010

ATGAACATTCAACCCAAAACTGAACCTGGGTCACCACCAGGTTTCCATTCCACAAACCCTAACTACTTTGAAAAAATGAGTATTCATGAGCTTGTTATGGTGTTGCGTCGAACGTGTCAATGGGAAACTTTTGACAGTGTTGAAACTGTTTTGGAGAATAGGTATATGAGACTCAGAGAAGAGCTTCACCTGGAGAAACTCTCAAGGTTATACGCTGAGTCCGAGTTTAAGAAAAGAGAAGAGATTTGTGAAAAAGGGAAGAAAGTTCAAGAAAGTTATGAAGCACTTTTGAAAGAAGTTAAGGTAAATAGATTAGCTAATAGTGTTAGTATTGAAGAGCTAAGTAAGAAGAAGAATGAATTAGAGGGGGAAGTTGAGAAGTTGAAGAAAAAATGTGTTGATGATGGCAATGAAATTGATGTGTTAAGAAGAAAGAATGGTGAGCTAGAGGCTAAGATTTTGGAGTTGAGGAAGTTGAATGAAAAGAGGGTGGAGGATAATAATGAACTTGGTGTGTTGAGGAAAATGATTGGTAAATTGGAGCATGAAGTTTCGGAGCTGAGGAAATCGAAGAAGAAATGGTTAGATGATAGCAATGCTTTTGATGCGCTTAGGAATAAGGTTCGTGTATTGGAGGGTGATAAAAATGCTTTGGCTGGACTTGAGGTTAGAAATGGCGAGTTGAAGGAAACTATAAGTAGGTTGGGGAAAGAAAAGAGTAAGTTGGCTGATGAGAAACGTAAGATTGAGATATTACTTGGGTCCATGTACAAGAAATTTAGAGGACTGGTTGGAAGACTTTCGAGGTTGGAGGATGATACCAATCTTTTGAAGAGTGTAGGTGTCTCTGGTGGTGGTAGTAATGAGGGGAAGTCACCTGTTGATCCTATGGCTACTAATATTGAAGACAGAGATGAAGAGGATCTTCTTGACGATGAGTTCGGAAATGACACTGTTGAGGAGGCTGTCCCTGCTAATCACACTCTTGGAGTTGCTGCTAGTACTCAACCGCAGAGCCAAGGGAACAAGGATGTGCAAGGTTCATCATCAGCTAGTGGAAGAGTGAAACTGGATAAGAATATTGAGATCATATACCTTGATGATGACGACGACGACGACGACGAGGATGGTGGGTCTATGTCTCAAGGAGGTCATGAAAAGAAAGCTGTTTTTGGAATTGCTGTGAAGAATGAGGTTCCAAGTCCATCCGTGGCAACACAACAAAAAAGCAAATTTCCCAATGCAGCTGACACTGTTAAAAGAAAATTTTCTTTGAGCGACATTGAAATCTCCAGTGCCAGTTCTTCATCCTCCGACGATTCGTCATTTCTCGATGATCTTCCAATAAGGTCTGTGGTATCACTTGAAAGAAGAAAAAAATGTAGGCAGACGGGGCAGGACTGA

Protein sequence

>Msa0864010

MNIQPKTEPGSPPGFHSTNPNYFEKMSIHELVMVLRRTCQWETFDSVETVLENRYMRLREELHLEKLSRLYAESEFKKREEICEKGKKVQESYEALLKEVKVNRLANSVSIEELSKKKNELEGEVEKLKKKCVDDGNEIDVLRRKNGELEAKILELRKLNEKRVEDNNELGVLRKMIGKLEHEVSELRKSKKKWLDDSNAFDALRNKVRVLEGDKNALAGLEVRNGELKETISRLGKEKSKLADEKRKIEILLGSMYKKFRGLVGRLSRLEDDTNLLKSVGVSGGGSNEGKSPVDPMATNIEDRDEEDLLDDEFGNDTVEEAVPANHTLGVAASTQPQSQGNKDVQGSSSASGRVKLDKNIEIIYLDDDDDDDDEDGGSMSQGGHEKKAVFGIAVKNEVPSPSVATQQKSKFPNAADTVKRKFSLSDIEISSASSSSSDDSSFLDDLPIRSVVSLERRKKCRQTGQD*