AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0826500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 16 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTTCCTTCAATCATTT+TGG 0.204627 5_3:-66882631 Msa0826500:intron
GAGGTCAAAGAAAGGTAAAT+AGG 0.331735 5_3:+66881074 None:intergenic
CCATAAGGTATCATGCTTAC+GGG 0.399746 5_3:+66881044 None:intergenic
CCCGTAAGCATGATACCTTA+TGG 0.403720 5_3:-66881044 Msa0826500:CDS
ACAAGTTGACTTATAAGAAT+AGG 0.410748 5_3:+66881952 None:intergenic
TCCATAAGGTATCATGCTTA+CGG 0.432495 5_3:+66881043 None:intergenic
AGGTCAAAGAAAGGTAAATA+GGG 0.435214 5_3:+66881075 None:intergenic
AATCAAACCAAAATGATTGA+AGG 0.478114 5_3:+66882624 None:intergenic
CATGCTTACGGGCGAGGAAG+AGG 0.488055 5_3:+66881055 None:intergenic
AGGTATCATGCTTACGGGCG+AGG 0.497700 5_3:+66881049 None:intergenic
CAAAATTGTGGGTTCTACTC+AGG 0.506311 5_3:-66882658 Msa0826500:CDS
CTGGAGTCGTAGTATCCATA+AGG 0.511872 5_3:+66881029 None:intergenic
GTAATGTCATGCAAAATTGT+GGG 0.549398 5_3:-66882669 Msa0826500:CDS
TGTAATGTCATGCAAAATTG+TGG 0.558495 5_3:-66882670 Msa0826500:CDS
TAACATGACTCAAGCAACAC+TGG 0.558525 5_3:+66881010 None:intergenic
GCGAGGAAGAGGTCAAAGAA+AGG 0.633615 5_3:+66881066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATTTATTACTATTT+AGG - chr5_3:66882731-66882750 Msa0826500:intron 10.0%
!!! TTTTTATTTTCTTTTCTTTT+TGG - chr5_3:66882866-66882885 Msa0826500:intron 10.0%
!!! TTTTATTTTCTTTTCTTTTT+GGG - chr5_3:66882867-66882886 Msa0826500:intron 10.0%
!! TAATTTAGATAAAAAGGATA+AGG - chr5_3:66881512-66881531 Msa0826500:intron 15.0%
!!! AATGTCTTTTTTAAAATACA+GGG - chr5_3:66881784-66881803 Msa0826500:intron 15.0%
!! TAATAGCTTATTAAAAATGA+AGG - chr5_3:66881997-66882016 Msa0826500:intron 15.0%
!! AAAAAAAAAAAACAGCATTA+TGG + chr5_3:66882185-66882204 None:intergenic 15.0%
!!! ATTTGAAATTTAGTTTACTT+TGG - chr5_3:66882267-66882286 Msa0826500:intron 15.0%
!!! TTTGAAATTTAGTTTACTTT+GGG - chr5_3:66882268-66882287 Msa0826500:intron 15.0%
!!! TTTATTACTATTTAGGTTTT+TGG - chr5_3:66882738-66882757 Msa0826500:intron 15.0%
!!! TTATTACTATTTAGGTTTTT+GGG - chr5_3:66882739-66882758 Msa0826500:intron 15.0%
!!! TTTATTTTCTTTTCTTTTTG+GGG - chr5_3:66882868-66882887 Msa0826500:intron 15.0%
!! AATATAATGTAACTTATTCA+CGG + chr5_3:66883047-66883066 None:intergenic 15.0%
!! ATTAAATGGTTATTAGAATT+TGG + chr5_3:66883118-66883137 None:intergenic 15.0%
!! ACACAGAATAAAATATTAAA+TGG + chr5_3:66883132-66883151 None:intergenic 15.0%
!! ATAAGATACTTAAAATGTTA+AGG + chr5_3:66883764-66883783 None:intergenic 15.0%
!!! ATCCTTTGATATTATTTTTT+TGG - chr5_3:66883900-66883919 Msa0826500:intron 15.0%
!! TACCAAAAAAATAATATCAA+AGG + chr5_3:66883905-66883924 None:intergenic 15.0%
!! ATATTATTCTATTCTATGAA+AGG - chr5_3:66884324-66884343 Msa0826500:intron 15.0%
!! TACTATAGATATTAAATCTA+TGG + chr5_3:66884396-66884415 None:intergenic 15.0%
!!! TTTTTCTTATAAAACATAGA+TGG - chr5_3:66884432-66884451 Msa0826500:intron 15.0%
!!! CTGTTTTTTTTTTTTCTCTT+CGG - chr5_3:66881049-66881068 Msa0826500:CDS 20.0%
!!! AGAAAAATTGGTTCAAAATT+TGG + chr5_3:66881305-66881324 None:intergenic 20.0%
!! GACTGTTAATTTAGATAAAA+AGG - chr5_3:66881506-66881525 Msa0826500:intron 20.0%
!!! TTCAATTTTGTAAAAATCGA+GGG + chr5_3:66881735-66881754 None:intergenic 20.0%
!!! CAATGTCTTTTTTAAAATAC+AGG - chr5_3:66881783-66881802 Msa0826500:intron 20.0%
!!! TGTCATTTAAACATATCTTA+GGG - chr5_3:66881817-66881836 Msa0826500:intron 20.0%
!!! AGGTTTTAAATTCAACTTAT+AGG + chr5_3:66881859-66881878 None:intergenic 20.0%
!! ATTGTGAAAATGTATATGTA+AGG + chr5_3:66881879-66881898 None:intergenic 20.0%
!!! ATGAAGCAATATTTTAGTTT+GGG + chr5_3:66881935-66881954 None:intergenic 20.0%
!! ATTTCGTTTAGTTACAAATT+CGG + chr5_3:66881968-66881987 None:intergenic 20.0%
!!! ATAACCAAATGTTGTTTTAA+CGG + chr5_3:66882084-66882103 None:intergenic 20.0%
!! CTAACAATTTAACAGAATTA+TGG + chr5_3:66882226-66882245 None:intergenic 20.0%
!!! TTTTATAAGGAGAATATTGT+AGG - chr5_3:66883080-66883099 Msa0826500:intron 20.0%
!! ATAAAATGTTTGTACATTGT+CGG + chr5_3:66883169-66883188 None:intergenic 20.0%
!! TCTTAATATGATACTACATT+AGG - chr5_3:66883206-66883225 Msa0826500:intron 20.0%
!! CTTAATATGATACTACATTA+GGG - chr5_3:66883207-66883226 Msa0826500:intron 20.0%
!!! AACTTTTTAGTTAACATCAA+AGG + chr5_3:66883300-66883319 None:intergenic 20.0%
!!! AACTAAAAAGTTTTTTTGAG+AGG - chr5_3:66883308-66883327 Msa0826500:intron 20.0%
!! AAAAAAGAACATTATCATGA+TGG + chr5_3:66883476-66883495 None:intergenic 20.0%
!!! TATTTTCATAGTAAAGTCAT+AGG - chr5_3:66883520-66883539 Msa0826500:intron 20.0%
!! TTTCAAAATGCTTGAAAAAT+TGG - chr5_3:66883693-66883712 Msa0826500:intron 20.0%
!! AGTAGAATGTATTAATCAAA+CGG + chr5_3:66884089-66884108 None:intergenic 20.0%
!! TGATTAATACATTCTACTAT+TGG - chr5_3:66884091-66884110 Msa0826500:intron 20.0%
!!! TTTTTTTCTCTTCGGTAAAT+TGG - chr5_3:66881057-66881076 Msa0826500:CDS 25.0%
!! TATTGTGGAAAACTTTTTGT+TGG - chr5_3:66881084-66881103 Msa0826500:CDS 25.0%
! AATGATGCATCAAGAAAAAT+TGG + chr5_3:66881317-66881336 None:intergenic 25.0%
!!! CATTGATTGAATTTGTTACA+CGG - chr5_3:66881366-66881385 Msa0826500:intron 25.0%
! AACCATGCAAAAAGAAATTA+AGG + chr5_3:66881392-66881411 None:intergenic 25.0%
!! TAATTTCTTTTTGCATGGTT+TGG - chr5_3:66881392-66881411 Msa0826500:intron 25.0%
!! AATTTCTTTTTGCATGGTTT+GGG - chr5_3:66881393-66881412 Msa0826500:intron 25.0%
! AAAAAACATTCCAAGTTTGA+CGG - chr5_3:66881463-66881482 Msa0826500:intron 25.0%
!! TATGTATTGTTGTAAGTTGA+AGG - chr5_3:66881583-66881602 Msa0826500:intron 25.0%
!! ATGTATTGTTGTAAGTTGAA+GGG - chr5_3:66881584-66881603 Msa0826500:intron 25.0%
!! TCAATTTTGTAAAAATCGAG+GGG + chr5_3:66881734-66881753 None:intergenic 25.0%
!! CTTCAATTTTGTAAAAATCG+AGG + chr5_3:66881736-66881755 None:intergenic 25.0%
!! CTCGATTTTTACAAAATTGA+AGG - chr5_3:66881734-66881753 Msa0826500:intron 25.0%
!!! GTGTCATTTAAACATATCTT+AGG - chr5_3:66881816-66881835 Msa0826500:intron 25.0%
! GTCATTTAAACATATCTTAG+GGG - chr5_3:66881818-66881837 Msa0826500:intron 25.0%
!!! GATGAAGCAATATTTTAGTT+TGG + chr5_3:66881936-66881955 None:intergenic 25.0%
! ATTAAAAATGAAGGTTGTGA+TGG - chr5_3:66882006-66882025 Msa0826500:intron 25.0%
!!! TAACCAAATGTTGTTTTAAC+GGG + chr5_3:66882083-66882102 None:intergenic 25.0%
! GTTAAAACAACATTTGGTTA+TGG - chr5_3:66882083-66882102 Msa0826500:intron 25.0%
! ATAATTCAAATCCACATAGT+TGG - chr5_3:66882110-66882129 Msa0826500:intron 25.0%
! ATATAGAAGTTTATCAGTGT+TGG + chr5_3:66882489-66882508 None:intergenic 25.0%
! TTGAAATATAGTAACAACAG+TGG + chr5_3:66882609-66882628 None:intergenic 25.0%
!! AGTTTAAGACATAAGATGTT+TGG - chr5_3:66882628-66882647 Msa0826500:intron 25.0%
! ATAAGATGTTTGGTTATCTA+GGG - chr5_3:66882638-66882657 Msa0826500:CDS 25.0%
! ATATAGAGATAGAAGTTACA+AGG - chr5_3:66882691-66882710 Msa0826500:intron 25.0%
! TATAGAGATAGAAGTTACAA+GGG - chr5_3:66882692-66882711 Msa0826500:intron 25.0%
!!! TATTTAGGTTTTTGGGTTTT+TGG - chr5_3:66882746-66882765 Msa0826500:intron 25.0%
!!! ATTTAGGTTTTTGGGTTTTT+GGG - chr5_3:66882747-66882766 Msa0826500:intron 25.0%
! AATCAAACCAAAATGATTGA+AGG + chr5_3:66882952-66882971 None:intergenic 25.0%
!! TTTTAGCATATTGTAATCTG+AGG - chr5_3:66882970-66882989 Msa0826500:intron 25.0%
! TTATTAGTGTGATACATTGA+AGG - chr5_3:66883003-66883022 Msa0826500:intron 25.0%
! TATTAGTGTGATACATTGAA+GGG - chr5_3:66883004-66883023 Msa0826500:intron 25.0%
! GATATTTGTATTGCTATGAT+AGG - chr5_3:66883364-66883383 Msa0826500:intron 25.0%
! TAGTGTTAGTAATCTAATCA+TGG - chr5_3:66883404-66883423 Msa0826500:intron 25.0%
! TACTATGAAAATATTGCACA+CGG + chr5_3:66883513-66883532 None:intergenic 25.0%
!! ACAAGTTGACTTATAAGAAT+AGG + chr5_3:66883624-66883643 None:intergenic 25.0%
!! TTCTTATAAGTCAACTTGTT+TGG - chr5_3:66883625-66883644 Msa0826500:intron 25.0%
!!! ATATCCGATGCTTTATTTTT+AGG - chr5_3:66883927-66883946 Msa0826500:intron 25.0%
!!! TATCCGATGCTTTATTTTTA+GGG - chr5_3:66883928-66883947 Msa0826500:intron 25.0%
!! TTGGAAAGTACAATAGTAAA+TGG - chr5_3:66883993-66884012 Msa0826500:intron 25.0%
!! ATGACGAGTTATTGATTAAA+TGG - chr5_3:66884126-66884145 Msa0826500:intron 25.0%
!!! TTTACCAACACTTTGAAATT+AGG + chr5_3:66884225-66884244 None:intergenic 25.0%
AAACAGAAATTCAATGAGTC+TGG + chr5_3:66881035-66881054 None:intergenic 30.0%
CGGTAAATTGGTTATTATTG+TGG - chr5_3:66881069-66881088 Msa0826500:CDS 30.0%
TTGTGCTCAAAATTGAAAGA+TGG - chr5_3:66881206-66881225 Msa0826500:intron 30.0%
! TGTATTGTTGTAAGTTGAAG+GGG - chr5_3:66881585-66881604 Msa0826500:intron 30.0%
TGTGATTTAAGCATACCTAA+GGG + chr5_3:66881627-66881646 None:intergenic 30.0%
ATTTAAACATACCTGAGAGA+AGG + chr5_3:66881701-66881720 None:intergenic 30.0%
!!! AACCAAATGTTGTTTTAACG+GGG + chr5_3:66882082-66882101 None:intergenic 30.0%
TATATCCTCATTCTTCATGT+TGG - chr5_3:66882304-66882323 Msa0826500:intron 30.0%
TGTCCTAATACTCAAAATCT+CGG - chr5_3:66882329-66882348 Msa0826500:intron 30.0%
! ATCCAAAACATTTTGTGGAT+CGG + chr5_3:66882374-66882393 None:intergenic 30.0%
! TCACTATCCAAAACATTTTG+TGG + chr5_3:66882379-66882398 None:intergenic 30.0%
!! AAATGTTTTGGATAGTGATC+AGG - chr5_3:66882381-66882400 Msa0826500:intron 30.0%
!! AATGTTTTGGATAGTGATCA+GGG - chr5_3:66882382-66882401 Msa0826500:intron 30.0%
! TAAACTTCTATATTTGCTGC+AGG - chr5_3:66882496-66882515 Msa0826500:intron 30.0%
CATAAGATGTTTGGTTATCT+AGG - chr5_3:66882637-66882656 Msa0826500:CDS 30.0%
TATATCTGAATCCTCAAAAC+AGG + chr5_3:66882676-66882695 None:intergenic 30.0%
TGAGATGTAAAATCTGATTG+CGG - chr5_3:66882777-66882796 Msa0826500:intron 30.0%
TGTAATGTCATGCAAAATTG+TGG - chr5_3:66882903-66882922 Msa0826500:intron 30.0%
GTAATGTCATGCAAAATTGT+GGG - chr5_3:66882904-66882923 Msa0826500:intron 30.0%
! GTTTGTTCCTTCAATCATTT+TGG - chr5_3:66882942-66882961 Msa0826500:intron 30.0%
!! TGAATTTGTTGACAATAGGA+AGG - chr5_3:66883256-66883275 Msa0826500:intron 30.0%
AGGAATGTTAACTACAAAGT+TGG - chr5_3:66883328-66883347 Msa0826500:intron 30.0%
!! ATTGCTATGATAGGTTTTGT+TGG - chr5_3:66883373-66883392 Msa0826500:intron 30.0%
CTAATCATGGATATTTAGCT+AGG - chr5_3:66883417-66883436 Msa0826500:intron 30.0%
ATAGTAAAGTCATAGGACTT+AGG - chr5_3:66883527-66883546 Msa0826500:intron 30.0%
! TTATAAGTCAACTTGTTTGG+TGG - chr5_3:66883628-66883647 Msa0826500:intron 30.0%
!! TTTGGTGGCTTTTTATGTTT+TGG - chr5_3:66883643-66883662 Msa0826500:intron 30.0%
!!! GATACCTGTTTTGATTTGAA+TGG + chr5_3:66883878-66883897 None:intergenic 30.0%
!!! ATCCGATGCTTTATTTTTAG+GGG - chr5_3:66883929-66883948 Msa0826500:intron 30.0%
TTCCCCTAAAAATAAAGCAT+CGG + chr5_3:66883934-66883953 None:intergenic 30.0%
! ACGAGTTATTGATTAAATGG+TGG - chr5_3:66884129-66884148 Msa0826500:intron 30.0%
AATTAGGAACTACTCAAAAG+AGG + chr5_3:66884209-66884228 None:intergenic 30.0%
AGTTCCTAATTTCAAAGTGT+TGG - chr5_3:66884218-66884237 Msa0826500:intron 30.0%
TTTAGATGCAAATTCGATCA+AGG + chr5_3:66884274-66884293 None:intergenic 30.0%
! AGATGGCAGAGATTTTAAAT+TGG - chr5_3:66884449-66884468 Msa0826500:intron 30.0%
AGGTCAAAGAAAGGTAAATA+GGG + chr5_3:66884501-66884520 None:intergenic 30.0%
TTTCCTTGTGTTCAACTCAT+TGG - chr5_3:66881111-66881130 Msa0826500:CDS 35.0%
TCTATTGCTTTGCTTCTAAG+TGG - chr5_3:66881135-66881154 Msa0826500:intron 35.0%
GCACAAGACAATAAAGCAAA+TGG + chr5_3:66881192-66881211 None:intergenic 35.0%
CAACACAAAATACTGGAGTA+AGG + chr5_3:66881341-66881360 None:intergenic 35.0%
! CTTACTCCAGTATTTTGTGT+TGG - chr5_3:66881339-66881358 Msa0826500:intron 35.0%
TGACATCCAACACAAAATAC+TGG + chr5_3:66881348-66881367 None:intergenic 35.0%
! GGCCTTAATTTCTTTTTGCA+TGG - chr5_3:66881387-66881406 Msa0826500:intron 35.0%
ATAGAGTTTAACACGTGTGA+TGG - chr5_3:66881436-66881455 Msa0826500:intron 35.0%
! CATTTTTCATCCGTCAAACT+TGG + chr5_3:66881476-66881495 None:intergenic 35.0%
GTGTGATTTAAGCATACCTA+AGG + chr5_3:66881628-66881647 None:intergenic 35.0%
! CAATTGCCACCTTTATTTGT+TGG - chr5_3:66881670-66881689 Msa0826500:intron 35.0%
! AAGGTGTCTCCAACAAATAA+AGG + chr5_3:66881682-66881701 None:intergenic 35.0%
!!! ACCAAATGTTGTTTTAACGG+GGG + chr5_3:66882081-66882100 None:intergenic 35.0%
AAATAAACCTGCCAACTATG+TGG + chr5_3:66882124-66882143 None:intergenic 35.0%
!! GAGATTTTGAGTATTAGGAC+AGG + chr5_3:66882330-66882349 None:intergenic 35.0%
GTCCTAATACTCAAAATCTC+GGG - chr5_3:66882330-66882349 Msa0826500:intron 35.0%
TCCTAATACTCAAAATCTCG+GGG - chr5_3:66882331-66882350 Msa0826500:intron 35.0%
! AACCGATCCACAAAATGTTT+TGG - chr5_3:66882369-66882388 Msa0826500:intron 35.0%
! TTTTGTTGACACGAACTTGT+AGG - chr5_3:66882540-66882559 Msa0826500:intron 35.0%
GAAGTTACAAGGGAATGTTA+CGG - chr5_3:66882702-66882721 Msa0826500:intron 35.0%
GAGATGTAAAATCTGATTGC+GGG - chr5_3:66882778-66882797 Msa0826500:intron 35.0%
CATTAGGGAATGAGAAAACT+AGG - chr5_3:66883222-66883241 Msa0826500:intron 35.0%
!! GAGAAAACTAGGTTTGTTAC+TGG - chr5_3:66883233-66883252 Msa0826500:intron 35.0%
!! CTGGTGAATTTGTTGACAAT+AGG - chr5_3:66883252-66883271 Msa0826500:intron 35.0%
AGCACCATTCAAATCAAAAC+AGG - chr5_3:66883871-66883890 Msa0826500:intron 35.0%
! TTACTGTCATTTGCATTAGC+TGG - chr5_3:66883968-66883987 Msa0826500:intron 35.0%
!! TCATTTGCATTAGCTGGTTT+TGG - chr5_3:66883974-66883993 Msa0826500:intron 35.0%
ACAATAGTAAATGGACCAGA+AGG - chr5_3:66884002-66884021 Msa0826500:intron 35.0%
GTGGAAATTAGATTTGTGCA+TGG - chr5_3:66884148-66884167 Msa0826500:intron 35.0%
GAAATTAGATTTGTGCATGG+TGG - chr5_3:66884151-66884170 Msa0826500:intron 35.0%
! TGTTGGTAAAGTTACACACT+TGG - chr5_3:66884235-66884254 Msa0826500:intron 35.0%
ATGCAAATTCGATCAAGGAT+GGG + chr5_3:66884269-66884288 None:intergenic 35.0%
GAGGTCAAAGAAAGGTAAAT+AGG + chr5_3:66884502-66884521 None:intergenic 35.0%
! TCCATAAGGTATCATGCTTA+CGG + chr5_3:66884533-66884552 None:intergenic 35.0%
! GAACCAATGAGTTGAACACA+AGG + chr5_3:66881117-66881136 None:intergenic 40.0%
TATCTACAACCTAACACTGC+TGG + chr5_3:66881419-66881438 None:intergenic 40.0%
AGTTTAACACGTGTGATGGT+GGG - chr5_3:66881440-66881459 Msa0826500:intron 40.0%
AATTGCACTCATCTTCCCTT+AGG - chr5_3:66881609-66881628 Msa0826500:intron 40.0%
GTGTCTCCAACAAATAAAGG+TGG + chr5_3:66881679-66881698 None:intergenic 40.0%
TCCCCCGTTAAAACAACATT+TGG - chr5_3:66882077-66882096 Msa0826500:intron 40.0%
TTCAAATCCACATAGTTGGC+AGG - chr5_3:66882114-66882133 Msa0826500:intron 40.0%
CAGGTTTATTTGTCCTACGT+AGG - chr5_3:66882133-66882152 Msa0826500:intron 40.0%
GAAGTACAAACTACCTACGT+AGG + chr5_3:66882149-66882168 None:intergenic 40.0%
!! TCCCCGAGATTTTGAGTATT+AGG + chr5_3:66882335-66882354 None:intergenic 40.0%
TGCTGCAGGAATTACTACAT+AGG - chr5_3:66882510-66882529 Msa0826500:intron 40.0%
!! TAACTGAAGTGCCTGTTTTG+AGG - chr5_3:66882662-66882681 Msa0826500:CDS 40.0%
AATCTGATTGCGGGATATAG+CGG - chr5_3:66882787-66882806 Msa0826500:intron 40.0%
CAAAATTGTGGGTTCTACTC+AGG - chr5_3:66882915-66882934 Msa0826500:intron 40.0%
ATTGAAGGGATACCCTTCTA+GGG - chr5_3:66883018-66883037 Msa0826500:intron 40.0%
CAAAGTTGGACTTCATTAGC+TGG - chr5_3:66883342-66883361 Msa0826500:intron 40.0%
!!! GATAGGTTTTGTTGGCAGTT+TGG - chr5_3:66883381-66883400 Msa0826500:intron 40.0%
CAGTTCAAGATTTCAGCTAC+AGG + chr5_3:66883555-66883574 None:intergenic 40.0%
TAAATGGACCAGAAGGCAAA+TGG - chr5_3:66884009-66884028 Msa0826500:intron 40.0%
AAATGGACCAGAAGGCAAAT+GGG - chr5_3:66884010-66884029 Msa0826500:intron 40.0%
GATGCAAATTCGATCAAGGA+TGG + chr5_3:66884270-66884289 None:intergenic 40.0%
! CCATAAGGTATCATGCTTAC+GGG + chr5_3:66884532-66884551 None:intergenic 40.0%
GAGTTTAACACGTGTGATGG+TGG - chr5_3:66881439-66881458 Msa0826500:intron 45.0%
ACAGGCCAACATGAAGAATG+AGG + chr5_3:66882312-66882331 None:intergenic 45.0%
CGAAGATAATCCAGTGAAGC+AGG - chr5_3:66882563-66882582 Msa0826500:intron 45.0%
TCACAATTCACCTGCTTCAC+TGG + chr5_3:66882576-66882595 None:intergenic 45.0%
CATTGAAGGGATACCCTTCT+AGG - chr5_3:66883017-66883036 Msa0826500:intron 45.0%
TATTCACGGAGACCCTAGAA+GGG + chr5_3:66883033-66883052 None:intergenic 45.0%
TTATTCACGGAGACCCTAGA+AGG + chr5_3:66883034-66883053 None:intergenic 45.0%
TGTTTGTCCCATTTGCCTTC+TGG + chr5_3:66884020-66884039 None:intergenic 45.0%
CCCGTAAGCATGATACCTTA+TGG - chr5_3:66884529-66884548 Msa0826500:intron 45.0%
CTGGAGTCGTAGTATCCATA+AGG + chr5_3:66884547-66884566 None:intergenic 45.0%
!!! TTGATTATTTTTTTTTTATA+AGG - chr5_3:66883067-66883086 Msa0826500:intron 5.0%
TGTTGGAGACACCTTCTCTC+AGG - chr5_3:66881687-66881706 Msa0826500:intron 50.0%
AAGGAAGTTGAGCGTCATCG+AGG - chr5_3:66881753-66881772 Msa0826500:intron 50.0%
AGGAAGTTGAGCGTCATCGA+GGG - chr5_3:66881754-66881773 Msa0826500:intron 50.0%
GCGAGGAAGAGGTCAAAGAA+AGG + chr5_3:66884510-66884529 None:intergenic 50.0%
! TGGTTTGGGCCAGCAGTGTT+AGG - chr5_3:66881407-66881426 Msa0826500:intron 55.0%
GGAAGTTGAGCGTCATCGAG+GGG - chr5_3:66881755-66881774 Msa0826500:intron 55.0%
AGGTATCATGCTTACGGGCG+AGG + chr5_3:66884527-66884546 None:intergenic 55.0%
AGTTGAGCGTCATCGAGGGG+AGG - chr5_3:66881758-66881777 Msa0826500:intron 60.0%
GTTGAGCGTCATCGAGGGGA+GGG - chr5_3:66881759-66881778 Msa0826500:intron 60.0%
CATGCTTACGGGCGAGGAAG+AGG + chr5_3:66884521-66884540 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 66881019 66884576 66881019 ID=Msa0826500;Name=Msa0826500
chr5_3 mRNA 66881019 66884576 66881019 ID=Msa0826500-mRNA-1;Parent=Msa0826500;Name=Msa0826500-mRNA-1;_AED=0.83;_eAED=1.00;_QI=0|0|0|0.4|1|1|5|0|81
chr5_3 exon 66884571 66884576 66884571 ID=Msa0826500-mRNA-1:exon:21029;Parent=Msa0826500-mRNA-1
chr5_3 exon 66882835 66882842 66882835 ID=Msa0826500-mRNA-1:exon:21028;Parent=Msa0826500-mRNA-1
chr5_3 exon 66882632 66882701 66882632 ID=Msa0826500-mRNA-1:exon:21027;Parent=Msa0826500-mRNA-1
chr5_3 exon 66881954 66881989 66881954 ID=Msa0826500-mRNA-1:exon:21026;Parent=Msa0826500-mRNA-1
chr5_3 exon 66881019 66881144 66881019 ID=Msa0826500-mRNA-1:exon:21025;Parent=Msa0826500-mRNA-1
chr5_3 CDS 66884571 66884576 66884571 ID=Msa0826500-mRNA-1:cds;Parent=Msa0826500-mRNA-1
chr5_3 CDS 66882835 66882842 66882835 ID=Msa0826500-mRNA-1:cds;Parent=Msa0826500-mRNA-1
chr5_3 CDS 66882632 66882701 66882632 ID=Msa0826500-mRNA-1:cds;Parent=Msa0826500-mRNA-1
chr5_3 CDS 66881954 66881989 66881954 ID=Msa0826500-mRNA-1:cds;Parent=Msa0826500-mRNA-1
chr5_3 CDS 66881019 66881144 66881019 ID=Msa0826500-mRNA-1:cds;Parent=Msa0826500-mRNA-1
Gene Sequence

>Msa0826500

ATGCGAGTTTTTGGCTTTTTGCTTGTAATGTCATGCAAAATTGTGGGTTCTACTCAGGAATTGTTTGTTCCTTCAATCATTTTGATAGATTTGAAGCAACCTATTCTTATAAGTCAACTTATGGCAGAGATTTTAAATTGGTATATAATTGATAATTTACAATTAGTCCCTATTTACCTTTCTTTGACCTCTTCCTCGCCCGTAAGCATGATACCTTATGGATACTACGACTCCAGTGTTGCTTGA

Protein sequence

>Msa0826500

MRVFGFLLVMSCKIVGSTQELFVPSIILIDLKQPILISQLMAEILNWYIIDNLQLVPIYLSLTSSSPVSMIPYGYYDSSVA*