Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1005820 | XP_013447504.2 | 94.348 | 920 | 47 | 3 | 1 | 916 | 39 | 957 | 0.0 | 1710 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1005820 | A0A396GSL7 | 94.348 | 920 | 47 | 3 | 1 | 916 | 39 | 957 | 0.0 | 1710 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004540 | Msa1005820 | 0.806421 | 8.292535e-50 | -8.615850e-47 |
Msa0007970 | Msa1005820 | 0.802229 | 6.194202e-49 | -8.615850e-47 |
Msa0012940 | Msa1005820 | 0.822732 | 2.024242e-53 | -8.615850e-47 |
Msa0030280 | Msa1005820 | 0.803540 | 3.320127e-49 | -8.615850e-47 |
Msa0039250 | Msa1005820 | 0.840139 | 1.040770e-57 | -8.615850e-47 |
Msa0057610 | Msa1005820 | 0.842779 | 2.099825e-58 | -8.615850e-47 |
Msa0057710 | Msa1005820 | 0.845887 | 3.067230e-59 | -8.615850e-47 |
Msa0069600 | Msa1005820 | 0.829142 | 6.072299e-55 | -8.615850e-47 |
Msa0073670 | Msa1005820 | 0.815186 | 1.051587e-51 | -8.615850e-47 |
Msa0076040 | Msa1005820 | 0.804889 | 1.738963e-49 | -8.615850e-47 |
Msa0092670 | Msa1005820 | -0.806012 | 1.011554e-49 | -8.615850e-47 |
Msa0092690 | Msa1005820 | -0.815291 | 9.968591e-52 | -8.615850e-47 |
Msa0092740 | Msa1005820 | -0.811550 | 6.619956e-51 | -8.615850e-47 |
Msa0093850 | Msa1005820 | 0.816924 | 4.303747e-52 | -8.615850e-47 |
Msa0098470 | Msa1005820 | 0.802367 | 5.802021e-49 | -8.615850e-47 |
Msa0115090 | Msa1005820 | 0.800288 | 1.546324e-48 | -8.615850e-47 |
Msa0620990 | Msa1005820 | 0.819446 | 1.156352e-52 | -8.615850e-47 |
Msa0633570 | Msa1005820 | 0.805989 | 1.022726e-49 | -8.615850e-47 |
Msa0644030 | Msa1005820 | 0.806170 | 9.369384e-50 | -8.615850e-47 |
Msa0679100 | Msa1005820 | 0.807946 | 3.941798e-50 | -8.615850e-47 |
Msa0702340 | Msa1005820 | 0.845050 | 5.172128e-59 | -8.615850e-47 |
Msa0702590 | Msa1005820 | 0.845976 | 2.901024e-59 | -8.615850e-47 |
Msa0702660 | Msa1005820 | 0.844057 | 9.569522e-59 | -8.615850e-47 |
Msa0705000 | Msa1005820 | 0.811697 | 6.150906e-51 | -8.615850e-47 |
Msa0705040 | Msa1005820 | 0.812506 | 4.096541e-51 | -8.615850e-47 |
Msa0716410 | Msa1005820 | 0.842156 | 3.070931e-58 | -8.615850e-47 |
Msa0726090 | Msa1005820 | 0.813560 | 2.406580e-51 | -8.615850e-47 |
Msa0734960 | Msa1005820 | 0.816485 | 5.397671e-52 | -8.615850e-47 |
Msa0742510 | Msa1005820 | 0.806670 | 7.349801e-50 | -8.615850e-47 |
Msa0788770 | Msa1005820 | 0.834815 | 2.410136e-56 | -8.615850e-47 |
Msa0795660 | Msa1005820 | 0.807232 | 5.588854e-50 | -8.615850e-47 |
Msa0799000 | Msa1005820 | 0.816707 | 4.813592e-52 | -8.615850e-47 |
Msa0818630 | Msa1005820 | 0.806292 | 8.830193e-50 | -8.615850e-47 |
Msa0819540 | Msa1005820 | 0.848798 | 4.870939e-60 | -8.615850e-47 |
Msa0824640 | Msa1005820 | 0.825714 | 4.032261e-54 | -8.615850e-47 |
Msa0126770 | Msa1005820 | 0.808001 | 3.837508e-50 | -8.615850e-47 |
Msa0130240 | Msa1005820 | 0.834022 | 3.811443e-56 | -8.615850e-47 |
Msa0133720 | Msa1005820 | 0.841328 | 5.079507e-58 | -8.615850e-47 |
Msa0133820 | Msa1005820 | 0.820145 | 8.005947e-53 | -8.615850e-47 |
Msa0137610 | Msa1005820 | -0.808780 | 2.617924e-50 | -8.615850e-47 |
Msa0138360 | Msa1005820 | 0.824526 | 7.693893e-54 | -8.615850e-47 |
Msa0144360 | Msa1005820 | 0.818160 | 2.265418e-52 | -8.615850e-47 |
Msa0147980 | Msa1005820 | 0.830077 | 3.597203e-55 | -8.615850e-47 |
Msa0167480 | Msa1005820 | 0.805091 | 1.577914e-49 | -8.615850e-47 |
Msa0171850 | Msa1005820 | 0.823067 | 1.691119e-53 | -8.615850e-47 |
Msa0173890 | Msa1005820 | 0.812899 | 3.360166e-51 | -8.615850e-47 |
Msa0181230 | Msa1005820 | 0.809414 | 1.914726e-50 | -8.615850e-47 |
Msa0185400 | Msa1005820 | 0.806339 | 8.631277e-50 | -8.615850e-47 |
Msa0196190 | Msa1005820 | 0.808444 | 3.087902e-50 | -8.615850e-47 |
Msa0226460 | Msa1005820 | 0.810229 | 1.279082e-50 | -8.615850e-47 |
Msa0392200 | Msa1005820 | 0.803551 | 3.302199e-49 | -8.615850e-47 |
Msa0410500 | Msa1005820 | 0.811431 | 7.026250e-51 | -8.615850e-47 |
Msa0416400 | Msa1005820 | 0.806613 | 7.556888e-50 | -8.615850e-47 |
Msa0431770 | Msa1005820 | 0.838355 | 3.021043e-57 | -8.615850e-47 |
Msa0435370 | Msa1005820 | 0.802800 | 4.724173e-49 | -8.615850e-47 |
Msa0447370 | Msa1005820 | 0.817469 | 3.245759e-52 | -8.615850e-47 |
Msa0479200 | Msa1005820 | 0.815395 | 9.451926e-52 | -8.615850e-47 |
Msa0481460 | Msa1005820 | 0.818620 | 1.782782e-52 | -8.615850e-47 |
Msa0980940 | Msa1005820 | 0.823738 | 1.178167e-53 | -8.615850e-47 |
Msa1004420 | Msa1005820 | 0.826827 | 2.191089e-54 | -8.615850e-47 |
Msa1005820 | Msa1009750 | 0.802159 | 6.404402e-49 | -8.615850e-47 |
Msa1005820 | Msa1051600 | 0.815692 | 8.115609e-52 | -8.615850e-47 |
Msa1005820 | Msa1059960 | 0.808866 | 2.508998e-50 | -8.615850e-47 |
Msa1005820 | Msa1076560 | 0.826175 | 3.133299e-54 | -8.615850e-47 |
Msa1005820 | Msa1083880 | 0.831531 | 1.583571e-55 | -8.615850e-47 |
Msa1005820 | Msa1097230 | 0.803090 | 4.114417e-49 | -8.615850e-47 |
Msa1005820 | Msa1097820 | 0.810092 | 1.368576e-50 | -8.615850e-47 |
Msa1005820 | Msa1102560 | 0.815906 | 7.271368e-52 | -8.615850e-47 |
Msa1005820 | Msa1105160 | 0.801148 | 1.032261e-48 | -8.615850e-47 |
Msa1005820 | Msa1117550 | 0.801253 | 9.823917e-49 | -8.615850e-47 |
Msa1005820 | Msa1123350 | 0.807757 | 4.325454e-50 | -8.615850e-47 |
Msa1005820 | Msa1127590 | 0.809967 | 1.456515e-50 | -8.615850e-47 |
Msa1005820 | Msa1131560 | 0.808581 | 2.887309e-50 | -8.615850e-47 |
Msa1005820 | Msa1169720 | 0.834705 | 2.568760e-56 | -8.615850e-47 |
Msa1005820 | Msa1172640 | 0.832262 | 1.045059e-55 | -8.615850e-47 |
Msa1005820 | Msa1174100 | 0.803335 | 3.662218e-49 | -8.615850e-47 |
Msa1005820 | Msa1174530 | 0.857453 | 1.615645e-62 | -8.615850e-47 |
Msa1005820 | Msa1184370 | 0.824214 | 9.111064e-54 | -8.615850e-47 |
Msa1005820 | Msa1185130 | 0.808497 | 3.009112e-50 | -8.615850e-47 |
Msa1005820 | Msa1186530 | 0.842730 | 2.162968e-58 | -8.615850e-47 |
Msa1005820 | Msa1201810 | 0.802489 | 5.476527e-49 | -8.615850e-47 |
Msa1005820 | Msa1201830 | 0.823083 | 1.676042e-53 | -8.615850e-47 |
Msa1005820 | Msa1204850 | 0.801476 | 8.845472e-49 | -8.615850e-47 |
Msa1005820 | Msa1223330 | 0.817713 | 2.858877e-52 | -8.615850e-47 |
Msa1005820 | Msa1224840 | 0.848795 | 4.880751e-60 | -8.615850e-47 |
Msa1005820 | Msa1227690 | 0.832980 | 6.933581e-56 | -8.615850e-47 |
Msa1005820 | Msa1235250 | 0.866674 | 2.398693e-65 | -8.615850e-47 |
Msa1005820 | Msa1258710 | 0.811198 | 7.892733e-51 | -8.615850e-47 |
Msa1005820 | Msa1292830 | 0.806805 | 6.882577e-50 | -8.615850e-47 |
Msa1005820 | Msa1294840 | 0.826641 | 2.426026e-54 | -8.615850e-47 |
Msa1005820 | Msa1307950 | 0.808097 | 3.660417e-50 | -8.615850e-47 |
Msa1005820 | Msa1329450 | 0.819729 | 9.967234e-53 | -8.615850e-47 |
Msa1005820 | Msa1333560 | 0.808824 | 2.561382e-50 | -8.615850e-47 |
Msa1005820 | Msa1333970 | 0.804345 | 2.258464e-49 | -8.615850e-47 |
Msa1005820 | Msa1369150 | 0.817391 | 3.379801e-52 | -8.615850e-47 |
Msa1005820 | Msa1371520 | 0.819950 | 8.871904e-53 | -8.615850e-47 |
Msa1005820 | Msa1373820 | 0.824131 | 9.531511e-54 | -8.615850e-47 |
Msa1005820 | Msa1380970 | 0.830924 | 2.232444e-55 | -8.615850e-47 |
Msa1005820 | Msa1411950 | 0.809669 | 1.687635e-50 | -8.615850e-47 |
Msa1005820 | Msa1442850 | 0.823801 | 1.139028e-53 | -8.615850e-47 |
Msa1005820 | Msa1443930 | 0.867546 | 1.263698e-65 | -8.615850e-47 |
Msa1005820 | Msa1459460 | 0.811307 | 7.475968e-51 | -8.615850e-47 |
Msa0249540 | Msa1005820 | 0.801786 | 7.640952e-49 | -8.615850e-47 |
Msa0296250 | Msa1005820 | 0.815851 | 7.478042e-52 | -8.615850e-47 |
Msa0346990 | Msa1005820 | 0.815137 | 1.078276e-51 | -8.615850e-47 |
Msa0484290 | Msa1005820 | 0.805687 | 1.183872e-49 | -8.615850e-47 |
Msa0487780 | Msa1005820 | 0.800599 | 1.336367e-48 | -8.615850e-47 |
Msa0505150 | Msa1005820 | 0.814556 | 1.450823e-51 | -8.615850e-47 |
Msa0510290 | Msa1005820 | 0.810680 | 1.021999e-50 | -8.615850e-47 |
Msa0518030 | Msa1005820 | 0.825391 | 4.809707e-54 | -8.615850e-47 |
Msa0527190 | Msa1005820 | 0.817491 | 3.207666e-52 | -8.615850e-47 |
Msa0534750 | Msa1005820 | 0.800897 | 1.161550e-48 | -8.615850e-47 |
Msa0547020 | Msa1005820 | 0.808583 | 2.884105e-50 | -8.615850e-47 |
Msa0593700 | Msa1005820 | 0.820315 | 7.319607e-53 | -8.615850e-47 |
Msa0846240 | Msa1005820 | 0.815228 | 1.029350e-51 | -8.615850e-47 |
Msa0856050 | Msa1005820 | 0.832916 | 7.194294e-56 | -8.615850e-47 |
Msa0861510 | Msa1005820 | 0.805933 | 1.050873e-49 | -8.615850e-47 |
Msa0864010 | Msa1005820 | 0.829984 | 3.790554e-55 | -8.615850e-47 |
Msa0888940 | Msa1005820 | 0.809972 | 1.452881e-50 | -8.615850e-47 |
Msa0897400 | Msa1005820 | 0.802433 | 5.624491e-49 | -8.615850e-47 |
Msa0930780 | Msa1005820 | 0.809216 | 2.111707e-50 | -8.615850e-47 |
Msa0943170 | Msa1005820 | 0.820613 | 6.253311e-53 | -8.615850e-47 |
Msa0955190 | Msa1005820 | 0.811404 | 7.119573e-51 | -8.615850e-47 |
Msa0963020 | Msa1005820 | 0.844239 | 8.549822e-59 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1005820 | MtrunA17_Chr7g0215791 | 94.348 | 920 | 47 | 3 | 1 | 916 | 39 | 957 | 0.0 | 1710 |
Msa1005820 | MtrunA17_Chr4g0055841 | 32.117 | 274 | 129 | 7 | 27 | 293 | 33 | 256 | 1.29e-26 | 114 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1005820 | AT3G60380.1 | 36.201 | 279 | 126 | 14 | 47 | 320 | 51 | 282 | 1.24e-28 | 123 |
Msa1005820 | AT4G16790.1 | 46.018 | 113 | 39 | 4 | 17 | 110 | 9 | 118 | 9.90e-18 | 87.8 |
Find 193 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGAATTCTGATGATAATTT+TGG | 0.153084 | 7_1:-3842923 | Msa1005820:CDS |
GGTAAATATTTCAATGAAAA+TGG | 0.170433 | 7_1:-3842701 | Msa1005820:CDS |
GTGAGTGAAGATAGGGAATT+TGG | 0.171279 | 7_1:-3842632 | Msa1005820:CDS |
TTTCTCATCCTTCGCATTTC+AGG | 0.172291 | 7_1:-3841575 | Msa1005820:CDS |
CAAATTAGGCTTCAGAAAAT+TGG | 0.181564 | 7_1:-3840718 | Msa1005820:CDS |
CTCCCATAACTTGGTGAGTA+TGG | 0.203790 | 7_1:+3843225 | None:intergenic |
GGAAATGGATCCTTCGAATT+TGG | 0.209241 | 7_1:-3842609 | Msa1005820:CDS |
ATTGGCATTGTTGTTGCTTA+TGG | 0.216714 | 7_1:-3843184 | Msa1005820:CDS |
GGAAACATGCTGCACATTTA+AGG | 0.232974 | 7_1:-3842040 | Msa1005820:CDS |
TCCACACTCTTTGATGGTTC+TGG | 0.237883 | 7_1:+3840874 | None:intergenic |
CGGTTTCCAAGTGGAAGATT+TGG | 0.247884 | 7_1:-3841727 | Msa1005820:CDS |
AATGGAAGTGATTCGAGTTT+AGG | 0.267445 | 7_1:-3842683 | Msa1005820:CDS |
ACCGGTTCGAAGTTTGAAAT+TGG | 0.270312 | 7_1:-3842747 | Msa1005820:CDS |
AATCCGCTGCAGGAAGGTTT+AGG | 0.273976 | 7_1:-3841420 | Msa1005820:CDS |
TGAGTTTCATCAACAGATAT+TGG | 0.296093 | 7_1:+3841552 | None:intergenic |
ATGGAAAGGGAGAAAGTTTA+TGG | 0.296203 | 7_1:-3842503 | Msa1005820:CDS |
AAGATTTCTCAGGTGTCTTC+AGG | 0.298935 | 7_1:-3841636 | Msa1005820:CDS |
TCTGAATATGTCAATGATTC+AGG | 0.305872 | 7_1:-3840796 | Msa1005820:CDS |
CGCAAATGGGGTTTCGAGAT+TGG | 0.308229 | 7_1:+3843376 | None:intergenic |
AAGTCTTCCACACTCTTTGA+TGG | 0.315244 | 7_1:+3840868 | None:intergenic |
AGAGCCAGTGGATTGCCTTC+AGG | 0.329099 | 7_1:-3841108 | Msa1005820:CDS |
TGAGTGAAGATAGGGAATTT+GGG | 0.332634 | 7_1:-3842631 | Msa1005820:CDS |
GAATTTCCATGAGATGGATT+TGG | 0.336254 | 7_1:-3841664 | Msa1005820:CDS |
AAAGTTTATGGCAATGATAA+TGG | 0.342619 | 7_1:-3842491 | Msa1005820:CDS |
TTCGCAGTTTAGGCCTCTTT+CGG | 0.342647 | 7_1:-3842465 | Msa1005820:CDS |
AAATTCATATCTTCAGAAAA+AGG | 0.344657 | 7_1:+3841681 | None:intergenic |
AGGATTCAAAGAAGAGATTC+GGG | 0.347970 | 7_1:-3842116 | Msa1005820:CDS |
GGTTGGATGTGAGTGAAGAT+AGG | 0.353006 | 7_1:-3842640 | Msa1005820:CDS |
CACCTTCATCTTCGGCTAGA+AGG | 0.353682 | 7_1:-3841341 | Msa1005820:CDS |
AACGAAACCTCATCATGATT+TGG | 0.365971 | 7_1:+3840922 | None:intergenic |
TTCGGAAAATATGAATTTCC+AGG | 0.367259 | 7_1:-3841841 | Msa1005820:CDS |
TCATAAACCTCTCGGATTAC+CGG | 0.367581 | 7_1:-3842765 | Msa1005820:CDS |
ATCCGCTGCAGGAAGGTTTA+GGG | 0.369848 | 7_1:-3841419 | Msa1005820:CDS |
GCAAATGGGGTTTCGAGATT+GGG | 0.376529 | 7_1:+3843377 | None:intergenic |
GGTTTCCAAGTGGAAGATTT+GGG | 0.381927 | 7_1:-3841726 | Msa1005820:CDS |
TTCAAGTTCACCTTCATCTT+CGG | 0.382503 | 7_1:-3841349 | Msa1005820:CDS |
GAACAAATGTGGTTCAATCT+TGG | 0.382568 | 7_1:-3842868 | Msa1005820:CDS |
CCAGGTTCAAAGCTCAAATT+AGG | 0.386811 | 7_1:-3840732 | Msa1005820:CDS |
ATAATGGTTCTTCGCAGTTT+AGG | 0.387328 | 7_1:-3842475 | Msa1005820:CDS |
AAGGATTCAAAGAAGAGATT+CGG | 0.388441 | 7_1:-3842117 | Msa1005820:CDS |
AGAATAAGATGATGCATTGT+TGG | 0.390686 | 7_1:-3843021 | Msa1005820:CDS |
AGATAGGGAATTTGGGGAAA+TGG | 0.394135 | 7_1:-3842624 | Msa1005820:CDS |
GGATTCCTATGTGCCTGCTT+TGG | 0.394775 | 7_1:-3842240 | Msa1005820:CDS |
CTTCTCCTTCGCCTATTGAC+TGG | 0.400771 | 7_1:-3842544 | Msa1005820:CDS |
ACCAATTTCAAACTTCGAAC+CGG | 0.402025 | 7_1:+3842746 | None:intergenic |
TCTTTGGTGACAACAATGTT+AGG | 0.406561 | 7_1:-3840666 | Msa1005820:CDS |
AACCCATACTCACCAAGTTA+TGG | 0.407274 | 7_1:-3843228 | Msa1005820:CDS |
AATGAAACGATTGAACTTAG+AGG | 0.411541 | 7_1:-3841612 | Msa1005820:CDS |
AAATGGCTGCAATGAAGTTT+CGG | 0.412708 | 7_1:+3841314 | None:intergenic |
ACCCATACTCACCAAGTTAT+GGG | 0.418982 | 7_1:-3843227 | Msa1005820:CDS |
GAATTTCCAAGAGGAAGATA+TGG | 0.421942 | 7_1:-3841790 | Msa1005820:CDS |
TGTGCTCCATATCTTCCTCT+TGG | 0.423735 | 7_1:+3841784 | None:intergenic |
TGGGGTTTCGAGATTGGGAT+TGG | 0.426577 | 7_1:+3843382 | None:intergenic |
TTTGTTCCACAACTTCCTCT+TGG | 0.428444 | 7_1:+3841886 | None:intergenic |
CGCCTATTGACTGGAATTCG+AGG | 0.430155 | 7_1:-3842535 | Msa1005820:CDS |
GAGCCAGTGGATTGCCTTCA+GGG | 0.430324 | 7_1:-3841107 | Msa1005820:CDS |
GACTTCCCCTTTGCATACTT+CGG | 0.437419 | 7_1:-3841859 | Msa1005820:CDS |
TTTAATGATGCTGCTGTTGA+TGG | 0.438444 | 7_1:-3842578 | Msa1005820:CDS |
AACAAAAGAATGGGTACTAA+AGG | 0.441078 | 7_1:-3842062 | Msa1005820:CDS |
TAATCTGAATGATGGCTTCA+AGG | 0.444395 | 7_1:-3841262 | Msa1005820:CDS |
TTCACGGTCTTTGCAGTCTG+TGG | 0.446276 | 7_1:-3841514 | Msa1005820:CDS |
GTTGATGAGACTAAGTTTGA+AGG | 0.446350 | 7_1:-3842443 | Msa1005820:CDS |
ACCGCAGGCGAGGATCCACC+TGG | 0.451847 | 7_1:-3841228 | Msa1005820:CDS |
CATTCAACATTACCAAAGTA+AGG | 0.454251 | 7_1:+3842803 | None:intergenic |
AACTTGAATCACGTATTTCA+CGG | 0.455012 | 7_1:-3841530 | Msa1005820:CDS |
GTCTAGCAAAAGCTCTATCA+AGG | 0.459498 | 7_1:-3841152 | Msa1005820:CDS |
ATTGACTGGAATTCGAGGTT+TGG | 0.461403 | 7_1:-3842530 | Msa1005820:CDS |
ATCAAAGAGTGTGGAAGACT+TGG | 0.462435 | 7_1:-3840866 | Msa1005820:CDS |
GGTGATGCATGGTTTGCATT+CGG | 0.464325 | 7_1:-3841193 | Msa1005820:CDS |
GAGGCGTTCTTCTAAGAGGT+TGG | 0.470996 | 7_1:-3842657 | Msa1005820:CDS |
CCTAATTTGAGCTTTGAACC+TGG | 0.471755 | 7_1:+3840732 | None:intergenic |
GTTGCTGTATCAACATTATC+CGG | 0.475864 | 7_1:+3841024 | None:intergenic |
ACAAAAGAATGGGTACTAAA+GGG | 0.484475 | 7_1:-3842061 | Msa1005820:CDS |
TTTGGCGACAAAGATTTCTC+AGG | 0.486752 | 7_1:-3841646 | Msa1005820:CDS |
GTTGTTGCTCAACCTTACTT+TGG | 0.489447 | 7_1:-3842815 | Msa1005820:CDS |
AATCAGATCTTCTATTCAAA+GGG | 0.490078 | 7_1:-3840975 | Msa1005820:CDS |
GAATTCGAGGTTTGGAAGGA+TGG | 0.490098 | 7_1:-3842522 | Msa1005820:CDS |
TTCTTTAAGAAACAAAAGAA+TGG | 0.490619 | 7_1:-3842072 | Msa1005820:CDS |
GTGAAGAAGCTCCCATAACT+TGG | 0.491959 | 7_1:+3843216 | None:intergenic |
TTCTGATGAAACAGAATCTA+CGG | 0.492039 | 7_1:+3841449 | None:intergenic |
AGATATGAATTTCCATGAGA+TGG | 0.492777 | 7_1:-3841670 | Msa1005820:CDS |
GAGACTAAGTTTGAAGGACT+TGG | 0.494783 | 7_1:-3842437 | Msa1005820:CDS |
TCACAGTCTTTCCAGTCGAC+AGG | 0.495798 | 7_1:-3841975 | Msa1005820:CDS |
GTGATTCGAGTTTAGGTTCG+AGG | 0.496075 | 7_1:-3842676 | Msa1005820:CDS |
TTAGTCTCATCAACCGAAAG+AGG | 0.499913 | 7_1:+3842452 | None:intergenic |
AAGTATGCATATCTTCCTCC+TGG | 0.500568 | 7_1:+3841823 | None:intergenic |
GTTGGATGTGAGTGAAGATA+GGG | 0.500698 | 7_1:-3842639 | Msa1005820:CDS |
CAACAATGCCAATGAAAAGA+AGG | 0.500909 | 7_1:+3843194 | None:intergenic |
AATTGTTTCTCCAAATTCGA+AGG | 0.501586 | 7_1:+3842599 | None:intergenic |
GTTGAATGTGGCGAGGTTGT+TGG | 0.503026 | 7_1:-3842788 | Msa1005820:CDS |
GAGGTTTGGAAGGATGGAAA+GGG | 0.503693 | 7_1:-3842516 | Msa1005820:CDS |
AAGAAGAGATTCGGGGAAGA+AGG | 0.503884 | 7_1:-3842108 | Msa1005820:CDS |
GAATCAGATCTTCTATTCAA+AGG | 0.504619 | 7_1:-3840976 | Msa1005820:CDS |
TTTGTCCCAAATCTTCCACT+TGG | 0.505382 | 7_1:+3841721 | None:intergenic |
ATGATGCATTGTTGGAATGA+TGG | 0.506708 | 7_1:-3843013 | Msa1005820:CDS |
CAATCTCGAAACCCCATTTG+CGG | 0.509692 | 7_1:-3843375 | Msa1005820:CDS |
CATCTTCAACTGAGCTACCC+TGG | 0.511679 | 7_1:+3840824 | None:intergenic |
TCTTTAAGAAACAAAAGAAT+GGG | 0.511855 | 7_1:-3842071 | Msa1005820:CDS |
AAATCATGATGAGGTTTCGT+TGG | 0.512566 | 7_1:-3840920 | Msa1005820:CDS |
AGAAAATATGAATCCGCTGC+AGG | 0.514221 | 7_1:-3841430 | Msa1005820:CDS |
TCGTGTAGCAAGCTAACAAA+TGG | 0.514352 | 7_1:+3841297 | None:intergenic |
GGATCAATTGAAAGATCAAA+GGG | 0.515027 | 7_1:-3840697 | Msa1005820:CDS |
TCACGGTCTTTGCAGTCTGT+GGG | 0.516041 | 7_1:-3841513 | Msa1005820:CDS |
TAGCAAGCAAGCCGATGAAA+AGG | 0.516544 | 7_1:-3841061 | Msa1005820:CDS |
CGAGGTTTGGAAGGATGGAA+AGG | 0.516878 | 7_1:-3842517 | Msa1005820:CDS |
TAACAAGCTTGAGAGCCTCC+AGG | 0.518168 | 7_1:-3840842 | Msa1005820:CDS |
ATATGTCAATGATTCAGGAT+TGG | 0.521804 | 7_1:-3840791 | Msa1005820:CDS |
GCATCGGATAATATCAATAC+GGG | 0.522599 | 7_1:-3842296 | Msa1005820:CDS |
AATCTGAATGATGGCTTCAA+GGG | 0.525413 | 7_1:-3841261 | Msa1005820:CDS |
TGGATCAATTGAAAGATCAA+AGG | 0.525605 | 7_1:-3840698 | Msa1005820:CDS |
TTGTCGCCAAATCCATCTCA+TGG | 0.527693 | 7_1:+3841658 | None:intergenic |
GTTCGAGGCGTTCTTCTAAG+AGG | 0.528027 | 7_1:-3842661 | Msa1005820:CDS |
GGGGAAAAGAAGAGCTTGCA+TGG | 0.528358 | 7_1:-3841399 | Msa1005820:CDS |
TTCGTTTGATTCGATTGCAT+CGG | 0.529575 | 7_1:-3842312 | Msa1005820:CDS |
TCCCATAACTTGGTGAGTAT+GGG | 0.529608 | 7_1:+3843226 | None:intergenic |
GATGGCTTCAAGGGTAAAAG+TGG | 0.530296 | 7_1:-3841252 | Msa1005820:CDS |
TGAGTTTCATCAACAGACAT+TGG | 0.534052 | 7_1:+3842017 | None:intergenic |
GTTTGCATTCGGACTCAGAC+AGG | 0.534931 | 7_1:-3841182 | Msa1005820:CDS |
AAGCTAGTGAATTTATCGCC+AGG | 0.536727 | 7_1:-3840750 | Msa1005820:CDS |
TCCCCTAAACCTTCCTGCAG+CGG | 0.539101 | 7_1:+3841417 | None:intergenic |
TGCATCGGATAATATCAATA+CGG | 0.539163 | 7_1:-3842297 | Msa1005820:CDS |
TGAAGAAGACGAAGAAGAAG+AGG | 0.540768 | 7_1:+3841368 | None:intergenic |
AACCTCGAATTCCAGTCAAT+AGG | 0.541599 | 7_1:+3842533 | None:intergenic |
ACTGGAATTCGAGGTTTGGA+AGG | 0.548857 | 7_1:-3842526 | Msa1005820:CDS |
ATCACCGACTCTTTGTTCCC+AGG | 0.551407 | 7_1:+3841210 | None:intergenic |
GTTGTTGGTCATAAACCTCT+CGG | 0.552677 | 7_1:-3842773 | Msa1005820:CDS |
CGTCCCTGAAGGCAATCCAC+TGG | 0.554415 | 7_1:+3841104 | None:intergenic |
TTGCATGCTTCAGAAAATGT+CGG | 0.555563 | 7_1:-3841747 | Msa1005820:CDS |
TGGAATGATGGGTCTAATGA+GGG | 0.558146 | 7_1:-3843001 | Msa1005820:CDS |
ATAACTTGGTGAGTATGGGT+TGG | 0.559562 | 7_1:+3843230 | None:intergenic |
CGCGAGAATGTATTCTTCGA+TGG | 0.559797 | 7_1:-3841937 | Msa1005820:CDS |
ATGAAACGATTGAACTTAGA+GGG | 0.560005 | 7_1:-3841611 | Msa1005820:CDS |
TGATGCATTGTTGGAATGAT+GGG | 0.560209 | 7_1:-3843012 | Msa1005820:CDS |
AAAGGTTGTTGTAAAGAAGC+CGG | 0.561512 | 7_1:-3841043 | Msa1005820:CDS |
AAGGGTAAAAGTGGGACCGC+AGG | 0.562026 | 7_1:-3841243 | Msa1005820:CDS |
GAAATTGGTTGAAAGAGAAG+TGG | 0.570222 | 7_1:-3842732 | Msa1005820:CDS |
GTTTCTTAAAGAACGGCCCT+CGG | 0.572883 | 7_1:+3842082 | None:intergenic |
AACAAAGAGTCGGTGATGCA+TGG | 0.575868 | 7_1:-3841204 | Msa1005820:CDS |
TCAACTTTCATCGTCCCTGA+AGG | 0.578610 | 7_1:+3841093 | None:intergenic |
GGTGGTAATAGTAGTACTGT+TGG | 0.578659 | 7_1:-3842980 | Msa1005820:CDS |
TTCCTTCTAGCCGAAGATGA+AGG | 0.582847 | 7_1:+3841339 | None:intergenic |
ATGAAGAGTAATCTGAATGA+TGG | 0.584563 | 7_1:-3841270 | Msa1005820:CDS |
CGAAGAATACATTCTCGCGT+TGG | 0.584770 | 7_1:+3841941 | None:intergenic |
GATGCTGCTGTTGATGGTGG+TGG | 0.584949 | 7_1:-3842572 | Msa1005820:CDS |
AACAAGCTTGAGAGCCTCCA+GGG | 0.587449 | 7_1:-3840841 | Msa1005820:CDS |
GTTAGAACAAGAAGAGCCAG+TGG | 0.587680 | 7_1:-3841120 | Msa1005820:CDS |
TTGGAATGATGGGTCTAATG+AGG | 0.593162 | 7_1:-3843002 | Msa1005820:CDS |
AATGATGCTGCTGTTGATGG+TGG | 0.595623 | 7_1:-3842575 | Msa1005820:CDS |
AGAAAATATGAATTTCCAAG+AGG | 0.598753 | 7_1:-3841799 | Msa1005820:CDS |
TCTAGCAAAAGCTCTATCAA+GGG | 0.599294 | 7_1:-3841151 | Msa1005820:CDS |
TGATTCAGGATTGGATTCTG+AGG | 0.599780 | 7_1:-3840782 | Msa1005820:CDS |
TCCGCTGCAGGAAGGTTTAG+GGG | 0.600140 | 7_1:-3841418 | Msa1005820:CDS |
ACCAGAACCATCAAAGAGTG+TGG | 0.601044 | 7_1:-3840875 | Msa1005820:CDS |
TTCAGGATTGGATTCTGAGG+TGG | 0.603058 | 7_1:-3840779 | Msa1005820:CDS |
TTCGAGACAACAGTGTGAGA+CGG | 0.605971 | 7_1:-3842205 | Msa1005820:CDS |
GGGTAGCTCAGTTGAAGATG+TGG | 0.607590 | 7_1:-3840821 | Msa1005820:CDS |
TACTTTGGTAATGTTGAATG+TGG | 0.608205 | 7_1:-3842800 | Msa1005820:CDS |
GTGAAATTGAGAATTCATGT+GGG | 0.608726 | 7_1:-3843051 | Msa1005820:CDS |
TTTGGTTGGATCCGCAAATG+GGG | 0.609216 | 7_1:+3843364 | None:intergenic |
GAGTGAAGATAGGGAATTTG+GGG | 0.611519 | 7_1:-3842630 | Msa1005820:CDS |
TGCAATCGAATCAAACGAAG+AGG | 0.612298 | 7_1:+3842316 | None:intergenic |
AAGAGGAAGGGATGGAACAA+AGG | 0.613436 | 7_1:-3842136 | Msa1005820:CDS |
CCCAGGTGGATCCTCGCCTG+CGG | 0.615664 | 7_1:+3841227 | None:intergenic |
CGAAGAAATGAGACAACAGA+AGG | 0.615667 | 7_1:-3842264 | Msa1005820:CDS |
AGAAATGAGACAACAGAAGG+AGG | 0.616109 | 7_1:-3842261 | Msa1005820:CDS |
TAAAAGTGGGACCGCAGGCG+AGG | 0.618491 | 7_1:-3841238 | Msa1005820:CDS |
ACCGACTCTTTGTTCCCAGG+TGG | 0.618912 | 7_1:+3841213 | None:intergenic |
AGACTTCCAAGAGGAAGTTG+TGG | 0.620957 | 7_1:-3841892 | Msa1005820:CDS |
AATATGAATCCGCTGCAGGA+AGG | 0.621708 | 7_1:-3841426 | Msa1005820:CDS |
GAAAGAGAAGTGGATGGTGT+TGG | 0.626607 | 7_1:-3842722 | Msa1005820:CDS |
GAATTCCAGTCAATAGGCGA+AGG | 0.627295 | 7_1:+3842539 | None:intergenic |
TTCGGGGAAGAAGGTATCCG+AGG | 0.630086 | 7_1:-3842099 | Msa1005820:CDS |
TGTGAAATTGAGAATTCATG+TGG | 0.631268 | 7_1:-3843052 | Msa1005820:CDS |
GATATTGGCCTGAAATGCGA+AGG | 0.633118 | 7_1:+3841567 | None:intergenic |
CTAGCAAAAGCTCTATCAAG+GGG | 0.633511 | 7_1:-3841150 | Msa1005820:CDS |
TCGGGGAAGAAGGTATCCGA+GGG | 0.635783 | 7_1:-3842098 | Msa1005820:CDS |
AGAAAATGTCGGTTTCCAAG+TGG | 0.639123 | 7_1:-3841736 | Msa1005820:CDS |
AATGATGGGTCTAATGAGGG+TGG | 0.648862 | 7_1:-3842998 | Msa1005820:CDS |
TCCACCTGGGAACAAAGAGT+CGG | 0.658869 | 7_1:-3841214 | Msa1005820:CDS |
ATGGCTTCAAGGGTAAAAGT+GGG | 0.660908 | 7_1:-3841251 | Msa1005820:CDS |
CCGCAGGCGAGGATCCACCT+GGG | 0.665123 | 7_1:-3841227 | Msa1005820:CDS |
AAACGAAGAAGAATACATAC+CGG | 0.666042 | 7_1:+3842373 | None:intergenic |
GGAAAATATGAATTTCCAGG+AGG | 0.667610 | 7_1:-3841838 | Msa1005820:CDS |
GAGACAACAGTGTGAGACGG+AGG | 0.678381 | 7_1:-3842202 | Msa1005820:CDS |
TTGGTTGAAAGAGAAGTGGA+TGG | 0.691598 | 7_1:-3842728 | Msa1005820:CDS |
TGGTAATGTTGAATGTGGCG+AGG | 0.695118 | 7_1:-3842795 | Msa1005820:CDS |
TGGAAATGATGGAACAAATG+TGG | 0.696111 | 7_1:-3842879 | Msa1005820:CDS |
CTTCGAACCGGTAATCCGAG+AGG | 0.707153 | 7_1:+3842758 | None:intergenic |
ACGTCGTTCTCTTCTCACGC+CGG | 0.709362 | 7_1:-3842392 | Msa1005820:CDS |
AGACACTATAGACTTCCAAG+AGG | 0.725110 | 7_1:-3841901 | Msa1005820:CDS |
CTTCAACTGAGCTACCCTGG+AGG | 0.729906 | 7_1:+3840827 | None:intergenic |
GGATTCAAAGAAGAGATTCG+GGG | 0.744273 | 7_1:-3842115 | Msa1005820:CDS |
TAGCAAAAGCTCTATCAAGG+GGG | 0.752717 | 7_1:-3841149 | Msa1005820:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GGTAAATATTTCAATGAAAA+TGG | - | chr7_1:3841353-3841372 | Msa1005820:CDS | 20.0% |
!!! | TTCTTTTGTTTCTTAAAGAA+CGG | + | chr7_1:3841982-3842001 | None:intergenic | 20.0% |
!!! | TTCTTTAAGAAACAAAAGAA+TGG | - | chr7_1:3841982-3842001 | Msa1005820:CDS | 20.0% |
!!! | TCTTTAAGAAACAAAAGAAT+GGG | - | chr7_1:3841983-3842002 | Msa1005820:CDS | 20.0% |
!! | AAATTCATATCTTCAGAAAA+AGG | + | chr7_1:3842376-3842395 | None:intergenic | 20.0% |
!!! | TTACCTTTTTTGATTGGTTT+TGG | + | chr7_1:3840711-3840730 | None:intergenic | 25.0% |
!! | ATCAGAATTCGACAATTTTT+CGG | + | chr7_1:3841123-3841142 | None:intergenic | 25.0% |
!! | TCGAATTCTGATGATAATTT+TGG | - | chr7_1:3841131-3841150 | Msa1005820:CDS | 25.0% |
!!! | GATAATTTTGGTTATTCAGT+TGG | - | chr7_1:3841143-3841162 | Msa1005820:CDS | 25.0% |
! | AAAGTTTATGGCAATGATAA+TGG | - | chr7_1:3841563-3841582 | Msa1005820:CDS | 25.0% |
!! | AGAAAATATGATTTTCGAAG+AGG | - | chr7_1:3841901-3841920 | Msa1005820:CDS | 25.0% |
! | AGAAAATATGAATTTCCAAG+AGG | - | chr7_1:3842255-3842274 | Msa1005820:CDS | 25.0% |
! | AATCAGATCTTCTATTCAAA+GGG | - | chr7_1:3843079-3843098 | Msa1005820:CDS | 25.0% |
!!! | CTTTTTTGATTGGTTTTGGT+TGG | + | chr7_1:3840707-3840726 | None:intergenic | 30.0% |
CAACCAAAACCAATCAAAAA+AGG | - | chr7_1:3840705-3840724 | Msa1005820:CDS | 30.0% | |
!!! | CAAGAGTTACCTTTTTTGAT+TGG | + | chr7_1:3840717-3840736 | None:intergenic | 30.0% |
! | TTTCCTGCTTCAACTATTTT+TGG | - | chr7_1:3840972-3840991 | Msa1005820:CDS | 30.0% |
TGTGAAATTGAGAATTCATG+TGG | - | chr7_1:3841002-3841021 | Msa1005820:CDS | 30.0% | |
GTGAAATTGAGAATTCATGT+GGG | - | chr7_1:3841003-3841022 | Msa1005820:CDS | 30.0% | |
AGAATAAGATGATGCATTGT+TGG | - | chr7_1:3841033-3841052 | Msa1005820:CDS | 30.0% | |
CATTCAACATTACCAAAGTA+AGG | + | chr7_1:3841254-3841273 | None:intergenic | 30.0% | |
!! | TACTTTGGTAATGTTGAATG+TGG | - | chr7_1:3841254-3841273 | Msa1005820:CDS | 30.0% |
! | AATTGTTTCTCCAAATTCGA+AGG | + | chr7_1:3841458-3841477 | None:intergenic | 30.0% |
AAACGAAGAAGAATACATAC+CGG | + | chr7_1:3841684-3841703 | None:intergenic | 30.0% | |
TGCATCGGATAATATCAATA+CGG | - | chr7_1:3841757-3841776 | Msa1005820:CDS | 30.0% | |
! | AAATTCTTCTTTTCCAAAGC+AGG | + | chr7_1:3841830-3841849 | None:intergenic | 30.0% |
! | AAAATCATATTTTCTCGAGC+AGG | + | chr7_1:3841896-3841915 | None:intergenic | 30.0% |
! | AATATGATTTTCGAAGAGGA+AGG | - | chr7_1:3841905-3841924 | Msa1005820:CDS | 30.0% |
! | ATATGATTTTCGAAGAGGAA+GGG | - | chr7_1:3841906-3841925 | Msa1005820:CDS | 30.0% |
AAGGATTCAAAGAAGAGATT+CGG | - | chr7_1:3841937-3841956 | Msa1005820:CDS | 30.0% | |
AACAAAAGAATGGGTACTAA+AGG | - | chr7_1:3841992-3842011 | Msa1005820:CDS | 30.0% | |
ACAAAAGAATGGGTACTAAA+GGG | - | chr7_1:3841993-3842012 | Msa1005820:CDS | 30.0% | |
! | TATTTTCCGAAGTATGCAAA+GGG | + | chr7_1:3842204-3842223 | None:intergenic | 30.0% |
! | ATATTTTCCGAAGTATGCAA+AGG | + | chr7_1:3842205-3842224 | None:intergenic | 30.0% |
TTCGGAAAATATGAATTTCC+AGG | - | chr7_1:3842213-3842232 | Msa1005820:CDS | 30.0% | |
!!! | ATTTTCTGAAGCATGCAAAT+AGG | + | chr7_1:3842305-3842324 | None:intergenic | 30.0% |
AGATATGAATTTCCATGAGA+TGG | - | chr7_1:3842384-3842403 | Msa1005820:CDS | 30.0% | |
AATGAAACGATTGAACTTAG+AGG | - | chr7_1:3842442-3842461 | Msa1005820:CDS | 30.0% | |
ATGAAACGATTGAACTTAGA+GGG | - | chr7_1:3842443-3842462 | Msa1005820:CDS | 30.0% | |
TGAGTTTCATCAACAGATAT+TGG | + | chr7_1:3842505-3842524 | None:intergenic | 30.0% | |
AACTTGAATCACGTATTTCA+CGG | - | chr7_1:3842524-3842543 | Msa1005820:CDS | 30.0% | |
TTCTGATGAAACAGAATCTA+CGG | + | chr7_1:3842608-3842627 | None:intergenic | 30.0% | |
ATGAAGAGTAATCTGAATGA+TGG | - | chr7_1:3842784-3842803 | Msa1005820:CDS | 30.0% | |
! | CTTTACAACAACCTTTTCAT+CGG | + | chr7_1:3843007-3843026 | None:intergenic | 30.0% |
GAATCAGATCTTCTATTCAA+AGG | - | chr7_1:3843078-3843097 | Msa1005820:CDS | 30.0% | |
! | CTATTTTCCAAATCATGATG+AGG | - | chr7_1:3843125-3843144 | Msa1005820:CDS | 30.0% |
TCTGAATATGTCAATGATTC+AGG | - | chr7_1:3843258-3843277 | Msa1005820:CDS | 30.0% | |
ATATGTCAATGATTCAGGAT+TGG | - | chr7_1:3843263-3843282 | Msa1005820:CDS | 30.0% | |
CAAATTAGGCTTCAGAAAAT+TGG | - | chr7_1:3843336-3843355 | Msa1005820:CDS | 30.0% | |
TGGATCAATTGAAAGATCAA+AGG | - | chr7_1:3843356-3843375 | Msa1005820:CDS | 30.0% | |
GGATCAATTGAAAGATCAAA+GGG | - | chr7_1:3843357-3843376 | Msa1005820:CDS | 30.0% | |
TCAAAGGGTCAAAAAATCTT+TGG | - | chr7_1:3843372-3843391 | Msa1005820:CDS | 30.0% | |
AAAAATTCAGGAGCTTGTGA+AGG | + | chr7_1:3840801-3840820 | None:intergenic | 35.0% | |
!! | ATGGGTTGGTTCAAAAATTC+AGG | + | chr7_1:3840813-3840832 | None:intergenic | 35.0% |
! | CTTCTTCACCTTCTTTTCAT+TGG | - | chr7_1:3840852-3840871 | Msa1005820:CDS | 35.0% |
CAACAATGCCAATGAAAAGA+AGG | + | chr7_1:3840863-3840882 | None:intergenic | 35.0% | |
! | ATTGGCATTGTTGTTGCTTA+TGG | - | chr7_1:3840870-3840889 | Msa1005820:CDS | 35.0% |
TCACCAAAAATAGTTGAAGC+AGG | + | chr7_1:3840978-3840997 | None:intergenic | 35.0% | |
ATGATGCATTGTTGGAATGA+TGG | - | chr7_1:3841041-3841060 | Msa1005820:CDS | 35.0% | |
TGATGCATTGTTGGAATGAT+GGG | - | chr7_1:3841042-3841061 | Msa1005820:CDS | 35.0% | |
!!! | GGTTATTCAGTTGGTTTTGA+TGG | - | chr7_1:3841152-3841171 | Msa1005820:CDS | 35.0% |
!!! | TATTCAGTTGGTTTTGATGG+TGG | - | chr7_1:3841155-3841174 | Msa1005820:CDS | 35.0% |
! | TGGAAATGATGGAACAAATG+TGG | - | chr7_1:3841175-3841194 | Msa1005820:CDS | 35.0% |
GAACAAATGTGGTTCAATCT+TGG | - | chr7_1:3841186-3841205 | Msa1005820:CDS | 35.0% | |
ACCAATTTCAAACTTCGAAC+CGG | + | chr7_1:3841311-3841330 | None:intergenic | 35.0% | |
GAAATTGGTTGAAAGAGAAG+TGG | - | chr7_1:3841322-3841341 | Msa1005820:CDS | 35.0% | |
! | AATGGAAGTGATTCGAGTTT+AGG | - | chr7_1:3841371-3841390 | Msa1005820:CDS | 35.0% |
TGAGTGAAGATAGGGAATTT+GGG | - | chr7_1:3841423-3841442 | Msa1005820:CDS | 35.0% | |
TTTAATGATGCTGCTGTTGA+TGG | - | chr7_1:3841476-3841495 | Msa1005820:CDS | 35.0% | |
ATGGAAAGGGAGAAAGTTTA+TGG | - | chr7_1:3841551-3841570 | Msa1005820:CDS | 35.0% | |
ATAATGGTTCTTCGCAGTTT+AGG | - | chr7_1:3841579-3841598 | Msa1005820:CDS | 35.0% | |
! | GTTGATGAGACTAAGTTTGA+AGG | - | chr7_1:3841611-3841630 | Msa1005820:CDS | 35.0% |
! | TTCGTTTGATTCGATTGCAT+CGG | - | chr7_1:3841697-3841716 | Msa1005820:CDS | 35.0% |
GCATCGGATAATATCAATAC+GGG | - | chr7_1:3841758-3841777 | Msa1005820:CDS | 35.0% | |
AGGATTCAAAGAAGAGATTC+GGG | - | chr7_1:3841938-3841957 | Msa1005820:CDS | 35.0% | |
TGAGTTTCATCAACAGACAT+TGG | + | chr7_1:3842040-3842059 | None:intergenic | 35.0% | |
! | ATTTTCCGAAGTATGCAAAG+GGG | + | chr7_1:3842203-3842222 | None:intergenic | 35.0% |
GGAAAATATGAATTTCCAGG+AGG | - | chr7_1:3842216-3842235 | Msa1005820:CDS | 35.0% | |
GAATTTCCAAGAGGAAGATA+TGG | - | chr7_1:3842264-3842283 | Msa1005820:CDS | 35.0% | |
TTGCATGCTTCAGAAAATGT+CGG | - | chr7_1:3842307-3842326 | Msa1005820:CDS | 35.0% | |
! | GAATTTCCATGAGATGGATT+TGG | - | chr7_1:3842390-3842409 | Msa1005820:CDS | 35.0% |
! | TTCAAGTTCACCTTCATCTT+CGG | - | chr7_1:3842705-3842724 | Msa1005820:CDS | 35.0% |
AAATGGCTGCAATGAAGTTT+CGG | + | chr7_1:3842743-3842762 | None:intergenic | 35.0% | |
TAATCTGAATGATGGCTTCA+AGG | - | chr7_1:3842792-3842811 | Msa1005820:CDS | 35.0% | |
AATCTGAATGATGGCTTCAA+GGG | - | chr7_1:3842793-3842812 | Msa1005820:CDS | 35.0% | |
TCTAGCAAAAGCTCTATCAA+GGG | - | chr7_1:3842903-3842922 | Msa1005820:CDS | 35.0% | |
AAAGGTTGTTGTAAAGAAGC+CGG | - | chr7_1:3843011-3843030 | Msa1005820:CDS | 35.0% | |
GTTGCTGTATCAACATTATC+CGG | + | chr7_1:3843033-3843052 | None:intergenic | 35.0% | |
AACGAAACCTCATCATGATT+TGG | + | chr7_1:3843135-3843154 | None:intergenic | 35.0% | |
AAATCATGATGAGGTTTCGT+TGG | - | chr7_1:3843134-3843153 | Msa1005820:CDS | 35.0% | |
! | TCTTTGGTGACAACAATGTT+AGG | - | chr7_1:3843388-3843407 | Msa1005820:CDS | 35.0% |
!! | TTTTGGTTGGATCCGCAAAT+GGG | + | chr7_1:3840694-3840713 | None:intergenic | 40.0% |
! | ATAACTTGGTGAGTATGGGT+TGG | + | chr7_1:3840827-3840846 | None:intergenic | 40.0% |
AACCCATACTCACCAAGTTA+TGG | - | chr7_1:3840826-3840845 | Msa1005820:CDS | 40.0% | |
ACCCATACTCACCAAGTTAT+GGG | - | chr7_1:3840827-3840846 | Msa1005820:CDS | 40.0% | |
! | TCCCATAACTTGGTGAGTAT+GGG | + | chr7_1:3840831-3840850 | None:intergenic | 40.0% |
!! | TTGGAATGATGGGTCTAATG+AGG | - | chr7_1:3841052-3841071 | Msa1005820:CDS | 40.0% |
!! | TGGAATGATGGGTCTAATGA+GGG | - | chr7_1:3841053-3841072 | Msa1005820:CDS | 40.0% |
GGTGGTAATAGTAGTACTGT+TGG | - | chr7_1:3841074-3841093 | Msa1005820:CDS | 40.0% | |
!!! | GGTTTTGATGGTGGAAATGA+TGG | - | chr7_1:3841164-3841183 | Msa1005820:CDS | 40.0% |
GTTGTTGCTCAACCTTACTT+TGG | - | chr7_1:3841239-3841258 | Msa1005820:CDS | 40.0% | |
GTTGTTGGTCATAAACCTCT+CGG | - | chr7_1:3841281-3841300 | Msa1005820:CDS | 40.0% | |
TCATAAACCTCTCGGATTAC+CGG | - | chr7_1:3841289-3841308 | Msa1005820:CDS | 40.0% | |
!! | ACCGGTTCGAAGTTTGAAAT+TGG | - | chr7_1:3841307-3841326 | Msa1005820:CDS | 40.0% |
TTGGTTGAAAGAGAAGTGGA+TGG | - | chr7_1:3841326-3841345 | Msa1005820:CDS | 40.0% | |
GTTGGATGTGAGTGAAGATA+GGG | - | chr7_1:3841415-3841434 | Msa1005820:CDS | 40.0% | |
GTGAGTGAAGATAGGGAATT+TGG | - | chr7_1:3841422-3841441 | Msa1005820:CDS | 40.0% | |
GAGTGAAGATAGGGAATTTG+GGG | - | chr7_1:3841424-3841443 | Msa1005820:CDS | 40.0% | |
AGATAGGGAATTTGGGGAAA+TGG | - | chr7_1:3841430-3841449 | Msa1005820:CDS | 40.0% | |
GGAAATGGATCCTTCGAATT+TGG | - | chr7_1:3841445-3841464 | Msa1005820:CDS | 40.0% | |
AACCTCGAATTCCAGTCAAT+AGG | + | chr7_1:3841524-3841543 | None:intergenic | 40.0% | |
ATTGACTGGAATTCGAGGTT+TGG | - | chr7_1:3841524-3841543 | Msa1005820:CDS | 40.0% | |
TTAGTCTCATCAACCGAAAG+AGG | + | chr7_1:3841605-3841624 | None:intergenic | 40.0% | |
GAGACTAAGTTTGAAGGACT+TGG | - | chr7_1:3841617-3841636 | Msa1005820:CDS | 40.0% | |
TGCAATCGAATCAAACGAAG+AGG | + | chr7_1:3841696-3841715 | None:intergenic | 40.0% | |
CGAAGAAATGAGACAACAGA+AGG | - | chr7_1:3841790-3841809 | Msa1005820:CDS | 40.0% | |
AGAAATGAGACAACAGAAGG+AGG | - | chr7_1:3841793-3841812 | Msa1005820:CDS | 40.0% | |
GGATTCAAAGAAGAGATTCG+GGG | - | chr7_1:3841939-3841958 | Msa1005820:CDS | 40.0% | |
GGAAACATGCTGCACATTTA+AGG | - | chr7_1:3842014-3842033 | Msa1005820:CDS | 40.0% | |
AGACACTATAGACTTCCAAG+AGG | - | chr7_1:3842153-3842172 | Msa1005820:CDS | 40.0% | |
TTTGTTCCACAACTTCCTCT+TGG | + | chr7_1:3842171-3842190 | None:intergenic | 40.0% | |
AAGTATGCATATCTTCCTCC+TGG | + | chr7_1:3842234-3842253 | None:intergenic | 40.0% | |
!! | AGAAAATGTCGGTTTCCAAG+TGG | - | chr7_1:3842318-3842337 | Msa1005820:CDS | 40.0% |
GGTTTCCAAGTGGAAGATTT+GGG | - | chr7_1:3842328-3842347 | Msa1005820:CDS | 40.0% | |
TTTGTCCCAAATCTTCCACT+TGG | + | chr7_1:3842336-3842355 | None:intergenic | 40.0% | |
TTTGGCGACAAAGATTTCTC+AGG | - | chr7_1:3842408-3842427 | Msa1005820:CDS | 40.0% | |
AAGATTTCTCAGGTGTCTTC+AGG | - | chr7_1:3842418-3842437 | Msa1005820:CDS | 40.0% | |
TTTCTCATCCTTCGCATTTC+AGG | - | chr7_1:3842479-3842498 | Msa1005820:CDS | 40.0% | |
AGAAAATATGAATCCGCTGC+AGG | - | chr7_1:3842624-3842643 | Msa1005820:CDS | 40.0% | |
TGAAGAAGACGAAGAAGAAG+AGG | + | chr7_1:3842689-3842708 | None:intergenic | 40.0% | |
TCGTGTAGCAAGCTAACAAA+TGG | + | chr7_1:3842760-3842779 | None:intergenic | 40.0% | |
ATGGCTTCAAGGGTAAAAGT+GGG | - | chr7_1:3842803-3842822 | Msa1005820:CDS | 40.0% | |
! | AGAGCTTTTGCTAGACTTGT+TGG | + | chr7_1:3842898-3842917 | None:intergenic | 40.0% |
GTCTAGCAAAAGCTCTATCA+AGG | - | chr7_1:3842902-3842921 | Msa1005820:CDS | 40.0% | |
CTAGCAAAAGCTCTATCAAG+GGG | - | chr7_1:3842904-3842923 | Msa1005820:CDS | 40.0% | |
TAGCAAAAGCTCTATCAAGG+GGG | - | chr7_1:3842905-3842924 | Msa1005820:CDS | 40.0% | |
AAGTCTTCCACACTCTTTGA+TGG | + | chr7_1:3843189-3843208 | None:intergenic | 40.0% | |
! | ATCAAAGAGTGTGGAAGACT+TGG | - | chr7_1:3843188-3843207 | Msa1005820:CDS | 40.0% |
TGATTCAGGATTGGATTCTG+AGG | - | chr7_1:3843272-3843291 | Msa1005820:CDS | 40.0% | |
AAGCTAGTGAATTTATCGCC+AGG | - | chr7_1:3843304-3843323 | Msa1005820:CDS | 40.0% | |
!! | CCTAATTTGAGCTTTGAACC+TGG | + | chr7_1:3843325-3843344 | None:intergenic | 40.0% |
CCAGGTTCAAAGCTCAAATT+AGG | - | chr7_1:3843322-3843341 | Msa1005820:CDS | 40.0% | |
GCAAATGGGGTTTCGAGATT+GGG | + | chr7_1:3840680-3840699 | None:intergenic | 45.0% | |
CAATCTCGAAACCCCATTTG+CGG | - | chr7_1:3840679-3840698 | Msa1005820:CDS | 45.0% | |
TTTGGTTGGATCCGCAAATG+GGG | + | chr7_1:3840693-3840712 | None:intergenic | 45.0% | |
!!! | GTTTTGGTTGGATCCGCAAA+TGG | + | chr7_1:3840695-3840714 | None:intergenic | 45.0% |
GGAGCTTGTGAAGGAAAAAG+TGG | + | chr7_1:3840792-3840811 | None:intergenic | 45.0% | |
! | CTCCCATAACTTGGTGAGTA+TGG | + | chr7_1:3840832-3840851 | None:intergenic | 45.0% |
GTGAAGAAGCTCCCATAACT+TGG | + | chr7_1:3840841-3840860 | None:intergenic | 45.0% | |
!! | AATGATGGGTCTAATGAGGG+TGG | - | chr7_1:3841056-3841075 | Msa1005820:CDS | 45.0% |
! | TGGTAATGTTGAATGTGGCG+AGG | - | chr7_1:3841259-3841278 | Msa1005820:CDS | 45.0% |
GAAAGAGAAGTGGATGGTGT+TGG | - | chr7_1:3841332-3841351 | Msa1005820:CDS | 45.0% | |
! | GTGATTCGAGTTTAGGTTCG+AGG | - | chr7_1:3841378-3841397 | Msa1005820:CDS | 45.0% |
GGTTGGATGTGAGTGAAGAT+AGG | - | chr7_1:3841414-3841433 | Msa1005820:CDS | 45.0% | |
! | AATGATGCTGCTGTTGATGG+TGG | - | chr7_1:3841479-3841498 | Msa1005820:CDS | 45.0% |
GAATTCCAGTCAATAGGCGA+AGG | + | chr7_1:3841518-3841537 | None:intergenic | 45.0% | |
ACTGGAATTCGAGGTTTGGA+AGG | - | chr7_1:3841528-3841547 | Msa1005820:CDS | 45.0% | |
GAATTCGAGGTTTGGAAGGA+TGG | - | chr7_1:3841532-3841551 | Msa1005820:CDS | 45.0% | |
GAGGTTTGGAAGGATGGAAA+GGG | - | chr7_1:3841538-3841557 | Msa1005820:CDS | 45.0% | |
TTCGCAGTTTAGGCCTCTTT+CGG | - | chr7_1:3841589-3841608 | Msa1005820:CDS | 45.0% | |
! | CTTTTCCAAAGCAGGCACAT+AGG | + | chr7_1:3841822-3841841 | None:intergenic | 45.0% |
TTCGAGACAACAGTGTGAGA+CGG | - | chr7_1:3841849-3841868 | Msa1005820:CDS | 45.0% | |
! | GATTTTCGAAGAGGAAGGGA+TGG | - | chr7_1:3841910-3841929 | Msa1005820:CDS | 45.0% |
AAGAGGAAGGGATGGAACAA+AGG | - | chr7_1:3841918-3841937 | Msa1005820:CDS | 45.0% | |
AAGAAGAGATTCGGGGAAGA+AGG | - | chr7_1:3841946-3841965 | Msa1005820:CDS | 45.0% | |
GTTTCTTAAAGAACGGCCCT+CGG | + | chr7_1:3841975-3841994 | None:intergenic | 45.0% | |
CAGAAAAAGATCCTGTCGAC+TGG | + | chr7_1:3842093-3842112 | None:intergenic | 45.0% | |
CGAAGAATACATTCTCGCGT+TGG | + | chr7_1:3842116-3842135 | None:intergenic | 45.0% | |
CGCGAGAATGTATTCTTCGA+TGG | - | chr7_1:3842117-3842136 | Msa1005820:CDS | 45.0% | |
AGACTTCCAAGAGGAAGTTG+TGG | - | chr7_1:3842162-3842181 | Msa1005820:CDS | 45.0% | |
GACTTCCCCTTTGCATACTT+CGG | - | chr7_1:3842195-3842214 | Msa1005820:CDS | 45.0% | |
TGTGCTCCATATCTTCCTCT+TGG | + | chr7_1:3842273-3842292 | None:intergenic | 45.0% | |
CGGTTTCCAAGTGGAAGATT+TGG | - | chr7_1:3842327-3842346 | Msa1005820:CDS | 45.0% | |
TTGTCGCCAAATCCATCTCA+TGG | + | chr7_1:3842399-3842418 | None:intergenic | 45.0% | |
! | GATATTGGCCTGAAATGCGA+AGG | + | chr7_1:3842490-3842509 | None:intergenic | 45.0% |
AATATGAATCCGCTGCAGGA+AGG | - | chr7_1:3842628-3842647 | Msa1005820:CDS | 45.0% | |
TTCCTTCTAGCCGAAGATGA+AGG | + | chr7_1:3842718-3842737 | None:intergenic | 45.0% | |
GATGGCTTCAAGGGTAAAAG+TGG | - | chr7_1:3842802-3842821 | Msa1005820:CDS | 45.0% | |
AACAAAGAGTCGGTGATGCA+TGG | - | chr7_1:3842850-3842869 | Msa1005820:CDS | 45.0% | |
! | GGTGATGCATGGTTTGCATT+CGG | - | chr7_1:3842861-3842880 | Msa1005820:CDS | 45.0% |
GTTAGAACAAGAAGAGCCAG+TGG | - | chr7_1:3842934-3842953 | Msa1005820:CDS | 45.0% | |
TCAACTTTCATCGTCCCTGA+AGG | + | chr7_1:3842964-3842983 | None:intergenic | 45.0% | |
TAGCAAGCAAGCCGATGAAA+AGG | - | chr7_1:3842993-3843012 | Msa1005820:CDS | 45.0% | |
ACCAGAACCATCAAAGAGTG+TGG | - | chr7_1:3843179-3843198 | Msa1005820:CDS | 45.0% | |
! | TCCACACTCTTTGATGGTTC+TGG | + | chr7_1:3843183-3843202 | None:intergenic | 45.0% |
! | TTCAGGATTGGATTCTGAGG+TGG | - | chr7_1:3843275-3843294 | Msa1005820:CDS | 45.0% |
TGGGGTTTCGAGATTGGGAT+TGG | + | chr7_1:3840675-3840694 | None:intergenic | 50.0% | |
CGCAAATGGGGTTTCGAGAT+TGG | + | chr7_1:3840681-3840700 | None:intergenic | 50.0% | |
GTTGAATGTGGCGAGGTTGT+TGG | - | chr7_1:3841266-3841285 | Msa1005820:CDS | 50.0% | |
! | GTTCGAGGCGTTCTTCTAAG+AGG | - | chr7_1:3841393-3841412 | Msa1005820:CDS | 50.0% |
! | GAGGCGTTCTTCTAAGAGGT+TGG | - | chr7_1:3841397-3841416 | Msa1005820:CDS | 50.0% |
CTTCTCCTTCGCCTATTGAC+TGG | - | chr7_1:3841510-3841529 | Msa1005820:CDS | 50.0% | |
! | CGCCTATTGACTGGAATTCG+AGG | - | chr7_1:3841519-3841538 | Msa1005820:CDS | 50.0% |
CGAGGTTTGGAAGGATGGAA+AGG | - | chr7_1:3841537-3841556 | Msa1005820:CDS | 50.0% | |
GGATTCCTATGTGCCTGCTT+TGG | - | chr7_1:3841814-3841833 | Msa1005820:CDS | 50.0% | |
TCACAGTCTTTCCAGTCGAC+AGG | - | chr7_1:3842079-3842098 | Msa1005820:CDS | 50.0% | |
TTCACGGTCTTTGCAGTCTG+TGG | - | chr7_1:3842540-3842559 | Msa1005820:CDS | 50.0% | |
TCACGGTCTTTGCAGTCTGT+GGG | - | chr7_1:3842541-3842560 | Msa1005820:CDS | 50.0% | |
AATCCGCTGCAGGAAGGTTT+AGG | - | chr7_1:3842634-3842653 | Msa1005820:CDS | 50.0% | |
ATCCGCTGCAGGAAGGTTTA+GGG | - | chr7_1:3842635-3842654 | Msa1005820:CDS | 50.0% | |
GGGGAAAAGAAGAGCTTGCA+TGG | - | chr7_1:3842655-3842674 | Msa1005820:CDS | 50.0% | |
CACCTTCATCTTCGGCTAGA+AGG | - | chr7_1:3842713-3842732 | Msa1005820:CDS | 50.0% | |
TCCACCTGGGAACAAAGAGT+CGG | - | chr7_1:3842840-3842859 | Msa1005820:CDS | 50.0% | |
!! | ATCACCGACTCTTTGTTCCC+AGG | + | chr7_1:3842847-3842866 | None:intergenic | 50.0% |
GTTTGCATTCGGACTCAGAC+AGG | - | chr7_1:3842872-3842891 | Msa1005820:CDS | 50.0% | |
TAACAAGCTTGAGAGCCTCC+AGG | - | chr7_1:3843212-3843231 | Msa1005820:CDS | 50.0% | |
AACAAGCTTGAGAGCCTCCA+GGG | - | chr7_1:3843213-3843232 | Msa1005820:CDS | 50.0% | |
CATCTTCAACTGAGCTACCC+TGG | + | chr7_1:3843233-3843252 | None:intergenic | 50.0% | |
GGGTAGCTCAGTTGAAGATG+TGG | - | chr7_1:3843233-3843252 | Msa1005820:CDS | 50.0% | |
CTTCGAACCGGTAATCCGAG+AGG | + | chr7_1:3841299-3841318 | None:intergenic | 55.0% | |
!! | GATGCTGCTGTTGATGGTGG+TGG | - | chr7_1:3841482-3841501 | Msa1005820:CDS | 55.0% |
ACGTCGTTCTCTTCTCACGC+CGG | - | chr7_1:3841662-3841681 | Msa1005820:CDS | 55.0% | |
GAGACAACAGTGTGAGACGG+AGG | - | chr7_1:3841852-3841871 | Msa1005820:CDS | 55.0% | |
!! | TTCGGGGAAGAAGGTATCCG+AGG | - | chr7_1:3841955-3841974 | Msa1005820:CDS | 55.0% |
!! | TCGGGGAAGAAGGTATCCGA+GGG | - | chr7_1:3841956-3841975 | Msa1005820:CDS | 55.0% |
TCCGCTGCAGGAAGGTTTAG+GGG | - | chr7_1:3842636-3842655 | Msa1005820:CDS | 55.0% | |
TCCCCTAAACCTTCCTGCAG+CGG | + | chr7_1:3842640-3842659 | None:intergenic | 55.0% | |
AAGGGTAAAAGTGGGACCGC+AGG | - | chr7_1:3842811-3842830 | Msa1005820:CDS | 55.0% | |
! | ACCGACTCTTTGTTCCCAGG+TGG | + | chr7_1:3842844-3842863 | None:intergenic | 55.0% |
!! | AGAGCCAGTGGATTGCCTTC+AGG | - | chr7_1:3842946-3842965 | Msa1005820:CDS | 55.0% |
!! | GAGCCAGTGGATTGCCTTCA+GGG | - | chr7_1:3842947-3842966 | Msa1005820:CDS | 55.0% |
CTTCAACTGAGCTACCCTGG+AGG | + | chr7_1:3843230-3843249 | None:intergenic | 55.0% | |
TAAAAGTGGGACCGCAGGCG+AGG | - | chr7_1:3842816-3842835 | Msa1005820:CDS | 60.0% | |
CGTCCCTGAAGGCAATCCAC+TGG | + | chr7_1:3842953-3842972 | None:intergenic | 60.0% | |
ACCGCAGGCGAGGATCCACC+TGG | - | chr7_1:3842826-3842845 | Msa1005820:CDS | 70.0% | |
CCCAGGTGGATCCTCGCCTG+CGG | + | chr7_1:3842830-3842849 | None:intergenic | 70.0% | |
CCGCAGGCGAGGATCCACCT+GGG | - | chr7_1:3842827-3842846 | Msa1005820:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 3840663 | 3843413 | 3840663 | ID=Msa1005820;Name=Msa1005820 |
chr7_1 | mRNA | 3840663 | 3843413 | 3840663 | ID=Msa1005820-mRNA-1;Parent=Msa1005820;Name=Msa1005820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|916 |
chr7_1 | exon | 3840663 | 3843413 | 3840663 | ID=Msa1005820-mRNA-1:exon:1466;Parent=Msa1005820-mRNA-1 |
chr7_1 | CDS | 3840663 | 3843413 | 3840663 | ID=Msa1005820-mRNA-1:cds;Parent=Msa1005820-mRNA-1 |
Gene Sequence |
Protein sequence |