AlfalfaGEDB | Msa1124160

M. sativa cultivar zhongmu-4 / Msa1124160

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044090	Msa1124160	0.800322	1.522109e-48	-8.615850e-47
Msa0104800	Msa1124160	0.801828	7.488600e-49	-8.615850e-47
Msa0106620	Msa1124160	0.805883	1.076777e-49	-8.615850e-47
Msa0106710	Msa1124160	0.818025	2.430561e-52	-8.615850e-47
Msa0178570	Msa1124160	0.805936	1.049490e-49	-8.615850e-47
Msa0183420	Msa1124160	0.802868	4.573398e-49	-8.615850e-47
Msa0183760	Msa1124160	0.805296	1.429828e-49	-8.615850e-47
Msa0206010	Msa1124160	0.808798	2.594721e-50	-8.615850e-47
Msa0249310	Msa1124160	0.800541	1.373226e-48	-8.615850e-47
Msa0326110	Msa1124160	0.805961	1.036618e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 34 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGACCCGGTTCCTGAAC+CGG	0.403375	7_3:-75279673	Msa1124160:CDS
AACCGGTTCAGGAACCGGGT+CGG	0.646620	7_3:+75279671	None:intergenic
AAGAAAAGCTGAACCGGTTC+AGG	0.362146	7_3:+75279660	None:intergenic
AAGGAGAGGAGCACGGAAAC+TGG	0.341508	7_3:-75279975	Msa1124160:five_prime_UTR
AAGGAGTAAAACTGTGGGCT+TGG	0.438906	7_3:+75279633	None:intergenic
AGAGAGAAGAGAATTGGCGT+TGG	0.477876	7_3:-75279788	Msa1124160:five_prime_UTR
AGCTGAACCGGTTCAGGAAC+CGG	0.361281	7_3:+75279666	None:intergenic
ATAGAGAGAGAGAAGAGAAT+TGG	0.376035	7_3:-75279794	Msa1124160:intron
ATATAGATGTTGATTGAAAT+TGG	0.232139	7_3:+75280102	None:intergenic
ATCCGAAGCTGAGAAGGAAG+AGG	0.578030	7_3:-75279895	Msa1124160:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGATGAATGGGGAAAAAA+AGG	+	chr7_3:75279974-75279993	None:intergenic	30.0%
CACAAACATTAAGATGAATG+GGG	+	chr7_3:75279983-75280002	None:intergenic	30.0%
CACACAAACATTAAGATGAA+TGG	+	chr7_3:75279985-75280004	None:intergenic	30.0%
CATTCATCTTAATGTTTGTG+TGG	-	chr7_3:75279983-75280002	Msa1124160:five_prime_UTR	30.0%
TGTGAGTTGTTACGTGAAAT+AGG	+	chr7_3:75279646-75279665	None:intergenic	35.0%
ATAGAGAGAGAGAAGAGAAT+TGG	-	chr7_3:75280037-75280056	Msa1124160:five_prime_UTR	35.0%
TCTCCTTTGGATCGAACAAA+AGG	+	chr7_3:75279843-75279862	None:intergenic	40.0%
GGAGTAAAGAAAAGCTGAAC+CGG	+	chr7_3:75280180-75280199	None:intergenic	40.0%
CCTTTGGATCGAACAAAAGG+AGG	+	chr7_3:75279840-75279859	None:intergenic	45.0%
TACCTCTTCCTTCTCAGCTT+CGG	+	chr7_3:75279941-75279960	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	75279641	75280212	75279641	ID=Msa1124160;Name=Msa1124160
chr7_3	mRNA	75279641	75280212	75279641	ID=Msa1124160-mRNA-1;Parent=Msa1124160;Name=Msa1124160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=402\|1\|0.5\|1\|1\|1\|2\|0\|29
chr7_3	exon	75279641	75279812	75279641	ID=Msa1124160-mRNA-1:exon:20210;Parent=Msa1124160-mRNA-1
chr7_3	exon	75279896	75280212	75279896	ID=Msa1124160-mRNA-1:exon:20209;Parent=Msa1124160-mRNA-1
chr7_3	five_prime_UTR	75279896	75280212	75279896	ID=Msa1124160-mRNA-1:five_prime_utr;Parent=Msa1124160-mRNA-1
chr7_3	five_prime_UTR	75279728	75279812	75279728	ID=Msa1124160-mRNA-1:five_prime_utr;Parent=Msa1124160-mRNA-1
chr7_3	CDS	75279641	75279727	75279641	ID=Msa1124160-mRNA-1:cds;Parent=Msa1124160-mRNA-1

Gene Sequence	>Msa1124160 ATGCTTTTGTATTTGCTGAACCGGTTCGGTCGAACCGACCCGGTTCCTGAACCGGTTCAGCTTTTCTTTACTCCAAGCCCACAGTTT
Protein sequence	>Msa1124160 MLLYLLNRFGRTDPVPEPVQLFFTPSPQF