AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0348530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348530 MtrunA17_Chr3g0081211 80.126 634 36 7 1 545 1 633 0.0 986
Msa0348530 MtrunA17_Chr3g0081391 59.588 631 161 9 1 539 1 629 0.0 694
Msa0348530 MtrunA17_Chr3g0081341 59.429 631 163 11 1 540 66 694 0.0 674
Msa0348530 MtrunA17_Chr3g0081191 56.735 631 177 8 1 540 1 626 0.0 668
Msa0348530 MtrunA17_Chr3g0081361 53.750 640 191 10 1 540 1 635 0.0 613
Msa0348530 MtrunA17_Chr3g0081371 54.219 640 187 11 1 540 1 634 0.0 586
Msa0348530 MtrunA17_Chr3g0080791 50.000 638 222 11 1 545 1 634 0.0 579
Msa0348530 MtrunA17_Chr3g0080771 49.060 638 228 10 1 545 1 634 0.0 565
Msa0348530 MtrunA17_Chr3g0080601 49.137 637 229 9 1 545 1 634 0.0 564
Msa0348530 MtrunA17_Chr3g0094301 48.589 638 232 10 1 545 1 635 0.0 562
Msa0348530 MtrunA17_Chr7g0229761 48.589 638 232 10 1 545 1 635 0.0 562
Msa0348530 MtrunA17_Chr3g0080741 47.500 640 238 10 1 545 1 637 0.0 560
Msa0348530 MtrunA17_Chr3g0081181 52.449 633 198 13 1 545 1 618 0.0 553
Msa0348530 MtrunA17_Chr3g0080731 47.492 638 239 9 1 545 1 635 0.0 544
Msa0348530 MtrunA17_Chr3g0080751 47.261 639 240 10 1 545 1 636 0.0 540
Msa0348530 MtrunA17_Chr1g0151481 45.201 646 246 14 1 545 1 639 1.01e-170 508
Msa0348530 MtrunA17_Chr3g0080631 45.880 619 232 10 1 545 1 590 3.04e-168 500
Msa0348530 MtrunA17_Chr3g0100971 44.322 634 262 11 1 545 1 632 8.63e-164 483
Msa0348530 MtrunA17_Chr3g0084351 46.237 558 210 8 71 540 1 556 3.57e-160 468
Msa0348530 MtrunA17_Chr3g0101321 44.025 636 254 12 1 545 1 625 1.41e-154 465
Msa0348530 MtrunA17_Chr3g0080651 44.793 605 217 12 1 545 4 551 2.85e-154 463
Msa0348530 MtrunA17_Chr3g0100831 43.838 641 253 17 1 545 1 630 1.43e-153 463
Msa0348530 MtrunA17_Chr3g0100961 43.014 637 264 12 1 545 1 630 1.50e-151 457
Msa0348530 MtrunA17_Chr3g0100761 42.834 614 260 11 1 545 1 592 3.63e-151 449
Msa0348530 MtrunA17_Chr3g0112511 43.829 632 260 10 1 545 1 624 7.62e-149 450
Msa0348530 MtrunA17_Chr3g0101331 41.422 647 274 13 1 545 1 644 8.80e-143 435
Msa0348530 MtrunA17_Chr1g0189351 41.627 627 268 12 1 534 1 622 4.42e-140 428
Msa0348530 MtrunA17_Chr3g0100801 42.952 603 268 15 5 545 2 590 5.81e-132 402
Msa0348530 MtrunA17_Chr3g0101011 38.591 653 290 17 1 545 1 650 3.90e-120 376
Msa0348530 MtrunA17_Chr3g0101251 39.000 600 296 17 1 539 1 591 2.09e-113 358
Msa0348530 MtrunA17_Chr3g0100851 40.417 527 228 11 88 545 1 510 3.05e-110 347
Msa0348530 MtrunA17_Chr3g0101221 36.452 620 301 11 11 539 13 630 1.03e-109 349
Msa0348530 MtrunA17_Chr3g0101231 37.402 639 294 15 1 539 1 633 1.45e-109 348
Msa0348530 MtrunA17_Chr3g0101181 37.710 594 265 13 43 539 53 638 1.95e-107 343
Msa0348530 MtrunA17_Chr3g0080721 52.147 326 127 5 246 545 49 371 6.21e-105 330
Msa0348530 MtrunA17_Chr3g0101201 37.542 602 277 15 11 524 21 611 1.08e-104 335
Msa0348530 MtrunA17_Chr3g0101271 35.726 613 293 15 21 545 8 607 1.41e-101 326
Msa0348530 MtrunA17_Chr3g0101241 35.726 613 293 15 21 545 8 607 1.50e-101 326
Msa0348530 MtrunA17_Chr5g0410001 34.277 636 311 15 1 545 1 620 1.45e-100 325
Msa0348530 MtrunA17_Chr3g0100681 42.377 446 193 8 161 545 4 446 3.65e-98 309
Msa0348530 MtrunA17_Chr5g0410031 32.862 636 322 13 1 545 1 622 1.56e-96 314
Msa0348530 MtrunA17_Chr5g0410021 33.386 635 304 16 1 538 1 613 2.56e-90 297
Msa0348530 MtrunA17_Chr3g0081841 46.597 382 154 11 140 507 1 346 1.08e-89 284
Msa0348530 MtrunA17_Chr5g0409991 34.331 635 296 18 1 538 1 611 6.40e-88 291
Msa0348530 MtrunA17_Chr5g0409971 32.919 644 311 17 1 545 1 622 6.77e-82 275
Msa0348530 MtrunA17_Chr3g0100781 42.091 373 154 5 1 312 1 372 4.36e-79 253
Msa0348530 MtrunA17_Chr3g0101211 38.308 402 197 7 173 524 1 401 1.64e-77 250
Msa0348530 MtrunA17_Chr1g0189271 43.260 319 123 3 140 400 1 319 1.66e-77 247
Msa0348530 MtrunA17_Chr3g0100731 41.590 327 163 5 246 545 64 389 1.37e-68 234
Msa0348530 MtrunA17_Chr3g0100701 49.091 275 108 4 1 244 1 274 2.09e-67 232
Msa0348530 MtrunA17_Chr3g0100701 42.935 184 93 6 370 545 282 461 1.56e-33 135
Msa0348530 MtrunA17_Chr3g0101421 44.803 279 116 6 1 244 1 276 5.24e-65 213
Msa0348530 MtrunA17_Chr3g0101391 39.739 307 156 5 256 533 1 307 5.16e-64 219
Msa0348530 MtrunA17_Chr7g0219851 27.970 665 344 23 1 545 3 652 2.96e-60 214
Msa0348530 MtrunA17_Chr2g0299001 26.667 660 353 20 1 540 1 649 1.06e-59 213
Msa0348530 MtrunA17_Chr5g0404741 28.331 653 336 23 1 545 1 629 2.76e-59 211
Msa0348530 MtrunA17_Chr3g0080701 50.000 220 69 5 1 182 1 217 3.60e-53 181
Msa0348530 MtrunA17_Chr1g0189321 45.283 212 109 4 328 532 4 215 1.96e-52 179
Msa0348530 MtrunA17_Chr7g0257221 26.267 651 329 25 9 539 13 632 1.48e-45 172
Msa0348530 MtrunA17_Chr3g0100721 48.165 218 86 4 1 191 1 218 9.06e-45 157
Msa0348530 MtrunA17_Chr8g0352831 27.367 581 329 23 34 539 75 637 1.63e-44 169
Msa0348530 MtrunA17_Chr4g0037421 34.242 330 177 10 246 545 361 680 3.23e-44 168
Msa0348530 MtrunA17_Chr4g0037421 30.705 241 130 6 1 211 38 271 4.05e-22 100
Msa0348530 MtrunA17_Chr7g0248531 28.723 564 305 23 63 545 65 612 1.68e-43 166
Msa0348530 MtrunA17_Chr1g0169951 26.283 643 343 21 6 539 10 630 1.79e-43 165
Msa0348530 MtrunA17_Chr3g0085561 25.443 621 349 20 3 539 11 601 5.15e-43 164
Msa0348530 MtrunA17_Chr7g0257201 25.811 647 343 26 9 542 13 635 6.40e-43 164
Msa0348530 MtrunA17_Chr3g0090141 27.087 587 323 21 41 539 51 620 1.29e-42 164
Msa0348530 MtrunA17_Chr3g0089871 27.273 605 322 25 31 539 41 623 3.11e-42 162
Msa0348530 MtrunA17_Chr5g0414181 26.719 640 341 25 1 545 1 607 3.56e-42 162
Msa0348530 MtrunA17_Chr3g0089911 26.050 595 336 17 28 535 38 615 6.93e-42 159
Msa0348530 MtrunA17_Chr4g0025391 26.412 602 343 20 28 545 38 623 7.45e-42 161
Msa0348530 MtrunA17_Chr3g0090371 26.576 587 325 23 41 539 51 619 7.96e-42 161
Msa0348530 MtrunA17_Chr5g0414201 25.862 638 351 23 1 545 1 609 8.88e-42 160
Msa0348530 MtrunA17_Chr3g0089601 26.544 599 342 22 31 545 39 623 1.47e-41 160
Msa0348530 MtrunA17_Chr3g0089501 26.421 598 342 22 32 545 40 623 1.80e-41 160
Msa0348530 MtrunA17_Chr3g0091081 26.878 599 339 24 31 545 41 624 1.89e-41 160
Msa0348530 MtrunA17_Chr3g0090651 27.352 574 318 24 60 545 64 626 2.10e-41 160
Msa0348530 MtrunA17_Chr1g0149071 35.077 325 148 9 203 499 1 290 7.30e-41 153
Msa0348530 MtrunA17_Chr7g0221481 26.858 592 327 22 38 539 42 617 7.86e-41 157
Msa0348530 MtrunA17_Chr3g0101341 37.879 264 118 6 23 244 1 260 1.00e-40 148
Msa0348530 MtrunA17_Chr1g0197241 25.323 620 345 19 24 543 670 1271 1.12e-40 158
Msa0348530 MtrunA17_Chr5g0414231 27.746 519 261 17 1 428 1 496 2.04e-40 153
Msa0348530 MtrunA17_Chr5g0415471 25.079 634 358 20 1 539 1 612 2.92e-40 156
Msa0348530 MtrunA17_Chr3g0092261 25.738 610 338 22 28 545 83 669 3.09e-40 156
Msa0348530 MtrunA17_Chr2g0309721 26.325 604 334 20 31 545 41 622 3.57e-40 156
Msa0348530 MtrunA17_Chr3g0090401 26.520 592 320 21 41 539 262 831 5.01e-40 156
Msa0348530 MtrunA17_Chr3g0087841 26.131 597 336 20 31 539 41 620 9.86e-40 155
Msa0348530 MtrunA17_Chr3g0082891 25.687 619 360 20 9 545 8 608 1.07e-39 154
Msa0348530 MtrunA17_Chr3g0090691 26.043 599 324 24 42 545 52 626 2.01e-39 154
Msa0348530 MtrunA17_Chr3g0092241 26.500 600 322 21 31 535 41 616 2.04e-39 154
Msa0348530 MtrunA17_Chr3g0090431 29.478 441 238 17 161 539 63 492 3.02e-39 153
Msa0348530 MtrunA17_Chr8g0348931 26.710 614 328 24 31 545 41 631 4.04e-39 153
Msa0348530 MtrunA17_Chr3g0091061 26.599 594 327 23 42 545 52 626 5.05e-39 153
Msa0348530 MtrunA17_Chr5g0414311 24.848 656 369 22 1 545 1 643 5.31e-39 152
Msa0348530 MtrunA17_Chr3g0082881 26.475 627 346 25 9 545 8 609 7.41e-39 152
Msa0348530 MtrunA17_Chr3g0085331 23.795 643 363 21 3 539 11 632 8.49e-39 152
Msa0348530 MtrunA17_Chr1g0189551 25.816 643 350 25 1 545 29 642 1.10e-38 151
Msa0348530 MtrunA17_Chr3g0086221 25.723 622 362 23 1 539 1 605 1.89e-38 151
Msa0348530 MtrunA17_Chr3g0101361 39.231 260 120 7 19 244 28 283 2.48e-38 150
Msa0348530 MtrunA17_Chr3g0101361 37.853 177 94 5 372 539 290 459 3.75e-24 107
Msa0348530 MtrunA17_Chr5g0431051 25.552 634 342 24 1 538 1 600 2.64e-38 150
Msa0348530 MtrunA17_Chr3g0087701 26.210 599 344 21 29 545 33 615 3.10e-38 150
Msa0348530 MtrunA17_Chr3g0082811 25.641 624 355 22 9 545 8 609 3.20e-38 150
Msa0348530 MtrunA17_Chr7g0257541 25.316 632 354 20 9 538 15 630 3.80e-38 150
Msa0348530 MtrunA17_Chr2g0299151 26.391 557 323 20 64 542 67 614 7.80e-38 149
Msa0348530 MtrunA17_Chr3g0086161 24.914 582 340 19 38 539 42 606 9.31e-38 149
Msa0348530 MtrunA17_Chr3g0089991 25.418 598 331 20 33 535 43 620 1.24e-37 149
Msa0348530 MtrunA17_Chr3g0082871 25.161 620 363 23 9 545 8 609 1.45e-37 147
Msa0348530 MtrunA17_Chr6g0484551 25.470 585 340 23 31 545 41 599 2.01e-37 147
Msa0348530 MtrunA17_Chr7g0248221 25.000 640 349 22 7 545 12 621 2.14e-37 147
Msa0348530 MtrunA17_Chr6g0475491 24.316 621 343 17 9 530 13 605 2.43e-37 147
Msa0348530 MtrunA17_Chr5g0430441 25.674 631 343 24 1 538 1 598 2.83e-37 147
Msa0348530 MtrunA17_Chr3g0089541 25.464 593 336 21 33 535 43 619 3.02e-37 147
Msa0348530 MtrunA17_Chr8g0355411 24.608 638 352 18 1 540 7 613 3.55e-37 147
Msa0348530 MtrunA17_Chr3g0089811 26.238 606 335 23 31 545 41 625 4.32e-37 147
Msa0348530 MtrunA17_Chr3g0082391 26.210 599 329 24 31 535 40 619 5.00e-37 146
Msa0348530 MtrunA17_Chr3g0085451 24.919 618 350 21 3 539 11 595 6.53e-37 146
Msa0348530 MtrunA17_Chr3g0086621 26.034 580 336 22 38 539 42 606 6.71e-37 146
Msa0348530 MtrunA17_Chr3g0085471 24.171 633 363 20 3 539 11 622 7.24e-37 146
Msa0348530 MtrunA17_Chr2g0282991 25.376 599 343 20 32 545 42 621 7.70e-37 146
Msa0348530 MtrunA17_Chr8g0338261 25.287 609 357 21 9 533 13 607 1.18e-36 145
Msa0348530 MtrunA17_Chr3g0089651 25.743 606 338 23 33 545 43 629 1.21e-36 145
Msa0348530 MtrunA17_Chr7g0257191 23.910 665 348 25 1 539 1 633 1.28e-36 145
Msa0348530 MtrunA17_Chr8g0337891 25.240 626 349 23 9 540 13 613 1.67e-36 144
Msa0348530 MtrunA17_Chr5g0415511 26.523 558 307 19 1 475 1 538 1.89e-36 144
Msa0348530 MtrunA17_Chr8g0338621 24.564 631 350 21 9 545 13 611 2.09e-36 144
Msa0348530 MtrunA17_Chr1g0169901 25.293 597 345 20 31 545 40 617 2.49e-36 144
Msa0348530 MtrunA17_Chr3g0087541 23.659 634 375 16 3 545 11 626 2.59e-36 144
Msa0348530 MtrunA17_Chr8g0352861 28.509 456 228 19 161 539 198 632 2.62e-36 144
Msa0348530 MtrunA17_Chr5g0433771 25.309 648 360 22 1 545 1 627 3.22e-36 144
Msa0348530 MtrunA17_Chr6g0468451 24.878 615 363 17 1 539 1 592 3.77e-36 144
Msa0348530 MtrunA17_Chr1g0164611 26.210 599 315 24 42 535 52 628 3.88e-36 144
Msa0348530 MtrunA17_Chr3g0089471 26.290 601 342 24 31 545 41 626 3.98e-36 144
Msa0348530 MtrunA17_Chr2g0316291 24.051 632 373 21 1 540 1 617 4.34e-36 144
Msa0348530 MtrunA17_Chr5g0430141 25.549 638 337 25 1 538 1 600 5.13e-36 144
Msa0348530 MtrunA17_Chr3g0089211 25.914 602 342 21 31 545 88 672 5.34e-36 144
Msa0348530 MtrunA17_Chr3g0089781 26.087 598 346 21 31 545 41 625 6.32e-36 143
Msa0348530 MtrunA17_Chr6g0468151 25.000 640 348 21 1 545 1 603 7.08e-36 143
Msa0348530 MtrunA17_Chr3g0089591 26.014 592 335 21 33 535 43 620 1.10e-35 143
Msa0348530 MtrunA17_Chr3g0084971 25.325 616 353 22 16 545 22 616 1.42e-35 142
Msa0348530 MtrunA17_Chr3g0089251 25.581 602 344 22 31 545 70 654 1.45e-35 142
Msa0348530 MtrunA17_Chr3g0113481 26.451 586 327 22 40 545 48 609 2.53e-35 141
Msa0348530 MtrunA17_Chr5g0430621 25.282 621 357 20 1 538 1 597 4.62e-35 140
Msa0348530 MtrunA17_Chr3g0113791 26.451 586 327 22 40 545 48 609 4.79e-35 140
Msa0348530 MtrunA17_Chr1g0164631 26.014 592 322 22 42 535 51 624 4.95e-35 140
Msa0348530 MtrunA17_Chr3g0085501 23.944 639 367 20 3 539 11 632 5.65e-35 140
Msa0348530 MtrunA17_Chr3g0089761 25.847 561 323 18 60 535 64 616 5.88e-35 140
Msa0348530 MtrunA17_Chr3g0089931 26.509 464 263 14 28 428 38 486 6.72e-35 138
Msa0348530 MtrunA17_Chr3g0082351 25.209 599 347 20 33 545 42 625 1.22e-34 139
Msa0348530 MtrunA17_Chr5g0430721 25.444 507 283 14 1 428 42 532 1.59e-34 139
Msa0348530 MtrunA17_Chr4g0009781 26.010 619 336 23 26 545 26 621 1.78e-34 139
Msa0348530 MtrunA17_Chr7g0244231 24.882 635 335 24 1 538 1 590 3.39e-34 138
Msa0348530 MtrunA17_Chr5g0444301 42.328 189 97 5 362 539 1 188 3.57e-34 134
Msa0348530 MtrunA17_Chr3g0082101 26.379 580 286 24 42 535 52 576 3.58e-34 138
Msa0348530 MtrunA17_Chr3g0089961 25.000 604 348 19 31 545 41 628 3.91e-34 138
Msa0348530 MtrunA17_Chr4g0010201 25.669 635 367 24 1 545 1 620 3.93e-34 138
Msa0348530 MtrunA17_Chr1g0197201 24.679 624 346 22 26 543 464 1069 4.13e-34 138
Msa0348530 MtrunA17_Chr3g0123111 23.802 626 363 19 1 543 1 595 4.66e-34 137
Msa0348530 MtrunA17_Chr3g0082311 25.418 598 339 20 38 545 47 627 6.80e-34 137
Msa0348530 MtrunA17_Chr4g0051651 24.133 663 369 25 1 545 20 666 6.94e-34 136
Msa0348530 MtrunA17_Chr2g0299091 25.607 453 249 13 164 540 162 602 7.08e-34 137
Msa0348530 MtrunA17_Chr5g0430581 25.472 636 331 22 1 538 1 591 7.82e-34 137
Msa0348530 MtrunA17_Chr2g0299101 26.144 459 249 14 159 540 183 628 8.38e-34 137
Msa0348530 MtrunA17_Chr3g0085651 24.365 591 344 17 38 540 42 617 1.12e-33 137
Msa0348530 MtrunA17_Chr3g0089421 25.083 602 349 20 31 545 41 627 1.12e-33 137
Msa0348530 MtrunA17_Chr1g0155991 24.116 622 361 20 1 538 1 595 1.16e-33 136
Msa0348530 MtrunA17_Chr4g0010261 25.827 635 367 20 1 545 1 621 1.23e-33 136
Msa0348530 MtrunA17_Chr5g0430511 24.290 634 349 21 1 538 1 599 1.25e-33 136
Msa0348530 MtrunA17_Chr1g0155321 24.233 619 362 18 1 538 1 593 1.96e-33 135
Msa0348530 MtrunA17_Chr3g0087581 24.242 594 342 19 32 539 36 607 2.46e-33 135
Msa0348530 MtrunA17_Chr5g0430291 23.659 634 352 18 1 538 1 598 3.40e-33 135
Msa0348530 MtrunA17_Chr1g0164391 26.290 601 331 25 38 545 47 628 3.59e-33 135
Msa0348530 MtrunA17_Chr3g0101401 41.667 168 89 3 78 236 17 184 5.12e-33 124
Msa0348530 MtrunA17_Chr2g0299121 25.551 454 248 14 164 540 188 628 9.78e-33 134
Msa0348530 MtrunA17_Chr5g0446611 25.497 604 340 25 32 545 42 625 1.20e-32 133
Msa0348530 MtrunA17_Chr5g0430641 25.080 626 353 23 1 538 1 598 1.52e-32 133
Msa0348530 MtrunA17_Chr5g0430951 25.737 509 278 18 1 428 1 490 2.47e-32 132
Msa0348530 MtrunA17_Chr6g0468121 22.940 619 371 17 1 539 1 593 2.93e-32 132
Msa0348530 MtrunA17_Chr6g0468101 25.198 504 282 15 1 428 1 485 3.64e-32 132
Msa0348530 MtrunA17_Chr6g0467911 24.209 632 361 19 1 545 1 601 4.74e-32 131
Msa0348530 MtrunA17_Chr3g0086151 23.906 594 333 20 38 540 42 607 5.68e-32 131
Msa0348530 MtrunA17_Chr8g0346831 24.876 607 346 19 9 526 13 598 6.23e-32 131
Msa0348530 MtrunA17_Chr8g0338671 24.899 494 291 15 107 530 4 487 7.31e-32 130
Msa0348530 MtrunA17_Chr6g0467961 22.838 613 376 16 1 539 1 590 9.69e-32 130
Msa0348530 MtrunA17_Chr5g0414171 26.556 482 235 15 1 425 1 420 1.42e-31 126
Msa0348530 MtrunA17_Chr4g0010221 25.993 604 345 22 30 545 30 619 1.65e-31 130
Msa0348530 MtrunA17_Chr3g0086181 23.777 593 333 20 38 539 42 606 1.83e-31 129
Msa0348530 MtrunA17_Chr8g0338391 25.000 520 280 17 9 441 13 509 2.39e-31 129
Msa0348530 MtrunA17_Chr6g0470011 23.344 634 364 22 1 545 1 601 3.02e-31 129
Msa0348530 MtrunA17_Chr6g0468021 23.339 617 368 17 1 539 1 590 3.16e-31 129
Msa0348530 MtrunA17_Chr4g0020501 26.740 546 294 22 64 535 23 536 5.26e-31 128
Msa0348530 MtrunA17_Chr3g0084031 23.361 595 355 19 38 545 49 629 5.45e-31 128
Msa0348530 MtrunA17_Chr1g0168901 25.540 556 336 21 63 552 60 603 5.86e-31 128
Msa0348530 MtrunA17_Chr3g0085801 22.476 614 363 15 3 539 11 588 7.04e-31 128
Msa0348530 MtrunA17_Chr1g0147141 28.246 439 240 17 163 539 197 622 7.25e-31 128
Msa0348530 MtrunA17_Chr5g0414291 28.941 387 192 13 1 319 1 372 7.38e-31 124
Msa0348530 MtrunA17_Chr3g0082131 25.497 604 330 29 42 545 50 633 1.05e-30 127
Msa0348530 MtrunA17_Chr3g0084081 24.751 602 352 18 31 545 40 627 1.06e-30 127
Msa0348530 MtrunA17_Chr6g0470081 23.344 634 364 23 1 545 1 601 1.20e-30 127
Msa0348530 MtrunA17_Chr5g0430331 26.906 446 239 16 1 376 1 429 1.67e-30 124
Msa0348530 MtrunA17_Chr3g0082791 23.579 598 349 19 38 545 49 628 2.03e-30 126
Msa0348530 MtrunA17_Chr3g0085091 24.422 606 349 23 29 545 34 619 4.33e-30 125
Msa0348530 MtrunA17_Chr3g0082321 24.650 572 322 22 38 545 47 573 4.46e-30 125
Msa0348530 MtrunA17_Chr3g0083721 29.167 432 244 19 167 547 148 568 5.07e-30 125
Msa0348530 MtrunA17_Chr6g0468341 25.051 487 273 13 1 412 1 470 5.97e-30 125
Msa0348530 MtrunA17_Chr6g0468331 24.644 491 272 14 1 418 1 466 5.98e-30 124
Msa0348530 MtrunA17_Chr7g0248431 24.156 563 314 20 1 474 9 547 6.79e-30 124
Msa0348530 MtrunA17_Chr3g0091041 26.582 474 247 22 60 458 64 511 1.38e-29 122
Msa0348530 MtrunA17_Chr3g0085131 24.573 586 350 22 32 539 37 608 2.12e-29 123
Msa0348530 MtrunA17_Chr3g0101351 34.457 267 129 10 1 225 5 267 3.43e-29 117
Msa0348530 MtrunA17_Chr6g0471941 24.914 582 332 20 9 505 13 574 3.63e-29 122
Msa0348530 MtrunA17_Chr3g0084051 24.202 595 350 21 38 545 47 627 3.89e-29 122
Msa0348530 MtrunA17_Chr3g0089431 26.650 394 213 12 64 384 68 458 6.15e-29 119
Msa0348530 MtrunA17_Chr3g0101171 56.989 93 36 1 351 439 5 97 6.40e-29 110
Msa0348530 MtrunA17_Chr5g0429951 23.465 635 353 21 1 538 1 599 7.36e-29 122
Msa0348530 MtrunA17_Chr6g0468271 22.386 612 379 17 1 539 1 589 8.88e-29 121
Msa0348530 MtrunA17_Chr8g0344071 26.396 591 333 24 30 548 337 897 9.56e-29 121
Msa0348530 MtrunA17_Chr7g0218941 23.153 609 376 16 9 539 13 607 9.82e-29 121
Msa0348530 MtrunA17_Chr5g0429961 24.398 623 358 21 1 538 1 595 1.30e-28 121
Msa0348530 MtrunA17_Chr3g0085931 24.116 622 361 18 1 539 1 594 1.35e-28 121
Msa0348530 MtrunA17_Chr4g0010251 25.041 603 349 22 30 545 30 616 1.85e-28 120
Msa0348530 MtrunA17_Chr3g0091011 24.144 584 354 23 29 545 34 595 2.21e-28 120
Msa0348530 MtrunA17_Chr1g0164581 25.812 585 328 28 42 545 50 609 2.28e-28 120
Msa0348530 MtrunA17_Chr3g0085111 25.336 596 334 24 32 539 37 609 3.18e-28 120
Msa0348530 MtrunA17_Chr4g0027251 24.960 629 353 22 1 538 1 601 4.20e-28 119
Msa0348530 MtrunA17_Chr3g0085551 25.370 473 261 17 144 539 41 498 4.21e-28 119
Msa0348530 MtrunA17_Chr3g0100841 66.667 81 27 0 1 81 1 81 1.32e-27 107
Msa0348530 MtrunA17_Chr3g0084061 23.810 567 330 20 64 540 67 621 2.23e-27 117
Msa0348530 MtrunA17_Chr8g0338251 23.627 601 364 17 9 533 13 594 3.35e-27 116
Msa0348530 MtrunA17_Chr3g0100791 39.181 171 93 5 384 545 1 169 3.54e-27 114
Msa0348530 MtrunA17_Chr3g0086741 22.349 613 360 15 31 539 35 635 4.12e-27 116
Msa0348530 MtrunA17_Chr3g0078361 26.154 455 228 18 173 537 1 437 4.73e-27 114
Msa0348530 MtrunA17_Chr6g0456121 26.778 478 259 20 125 539 140 589 6.16e-27 115
Msa0348530 MtrunA17_Chr6g0470021 24.580 476 274 17 137 545 34 491 8.41e-27 115
Msa0348530 MtrunA17_Chr8g0338361 23.841 453 274 15 139 527 21 466 1.10e-26 114
Msa0348530 MtrunA17_Chr4g0008461 26.258 457 244 18 161 535 153 598 1.47e-26 115
Msa0348530 MtrunA17_Chr8g0338861 29.677 310 185 11 247 530 7 309 2.42e-26 113
Msa0348530 MtrunA17_Chr3g0083591 25.362 552 314 20 67 547 66 590 2.51e-26 114
Msa0348530 MtrunA17_Chr5g0415551 24.744 489 286 18 128 547 10 485 4.72e-26 112
Msa0348530 MtrunA17_Chr8g0356251 30.448 335 188 16 246 547 329 651 4.95e-26 113
Msa0348530 MtrunA17_Chr3g0096971 41.221 131 58 2 246 357 45 175 1.20e-25 103
Msa0348530 MtrunA17_Chr6g0468111 26.437 435 230 17 144 539 51 434 1.48e-25 110
Msa0348530 MtrunA17_Chr3g0087731 25.829 422 245 13 176 539 1 412 2.30e-25 110
Msa0348530 MtrunA17_Chr3g0085161 24.508 457 279 17 141 539 24 472 4.18e-25 110
Msa0348530 MtrunA17_Chr2g0309151 28.440 327 196 15 247 545 89 405 4.50e-25 108
Msa0348530 MtrunA17_Chr3g0085521 23.639 588 360 21 32 545 36 608 4.73e-25 110
Msa0348530 MtrunA17_Chr3g0113781 28.909 339 201 10 238 545 75 404 1.22e-24 108
Msa0348530 MtrunA17_Chr3g0091971 25.101 494 287 18 127 550 125 605 1.47e-24 108
Msa0348530 MtrunA17_Chr5g0417251 29.375 320 189 13 246 539 65 373 1.51e-24 108
Msa0348530 MtrunA17_Chr3g0086091 25.701 428 243 15 176 539 1 417 1.60e-24 108
Msa0348530 MtrunA17_Chr8g0352211 23.740 615 369 21 1 530 1001 1600 1.95e-24 108
Msa0348530 MtrunA17_Chr8g0351821 24.169 451 263 11 1 384 1 439 2.21e-24 106
Msa0348530 MtrunA17_Chr6g0456131 24.709 429 248 15 178 540 193 612 2.53e-24 107
Msa0348530 MtrunA17_Chr3g0080871 26.891 476 268 21 141 547 149 613 1.18e-23 105
Msa0348530 MtrunA17_Chr3g0087301 24.359 390 206 10 1 321 1 370 5.73e-23 103
Msa0348530 MtrunA17_Chr3g0083621 27.439 328 205 10 246 547 316 636 4.12e-22 101
Msa0348530 MtrunA17_Chr5g0430901 25.789 380 204 13 1 319 1 363 4.72e-22 100
Msa0348530 MtrunA17_Chr2g0299141 26.012 346 194 11 244 540 11 343 5.03e-22 98.6
Msa0348530 MtrunA17_Chr5g0413811 28.440 327 189 13 246 545 76 384 2.40e-21 98.2
Msa0348530 MtrunA17_Chr1g0189261 56.790 81 34 1 1 81 1 80 3.32e-21 88.2
Msa0348530 MtrunA17_Chr1g0159111 24.249 466 267 19 158 545 165 622 3.50e-21 98.2
Msa0348530 MtrunA17_Chr3g0084811 28.345 441 242 19 167 547 350 776 4.04e-21 98.2
Msa0348530 MtrunA17_Chr3g0085701 26.357 387 214 14 64 385 59 439 4.51e-21 97.8
Msa0348530 MtrunA17_Chr2g0308491 26.953 256 136 5 158 367 8 258 4.72e-21 93.2
Msa0348530 MtrunA17_Chr3g0101411 60.759 79 30 1 1 79 1 78 5.94e-21 87.4
Msa0348530 MtrunA17_Chr7g0257551 26.284 331 164 9 144 400 86 410 9.30e-21 95.1
Msa0348530 MtrunA17_Chr4g0071021 22.366 465 259 12 1 393 1 435 1.39e-20 94.7
Msa0348530 MtrunA17_Chr6g0478721 23.183 509 293 19 114 545 50 537 3.22e-20 94.7
Msa0348530 MtrunA17_Chr3g0083751 28.267 329 199 12 247 547 311 630 9.56e-20 93.6
Msa0348530 MtrunA17_Chr3g0083681 24.826 431 264 17 167 547 182 602 4.34e-19 91.7
Msa0348530 MtrunA17_Chr3g0083641 24.886 438 258 18 167 547 178 601 9.38e-19 90.5
Msa0348530 MtrunA17_Chr5g0410481 26.012 346 195 13 241 540 248 578 2.05e-18 89.4
Msa0348530 MtrunA17_Chr4g0010491 25.959 443 243 17 1 372 1 429 2.26e-18 87.8
Msa0348530 MtrunA17_Chr4g0048421 22.756 624 362 27 9 535 10 610 2.64e-18 89.0
Msa0348530 MtrunA17_Chr6g0469991 23.545 378 211 13 1 319 1 359 3.70e-18 86.3
Msa0348530 MtrunA17_Chr1g0197191 29.123 285 148 11 91 334 61 332 8.62e-18 84.7
Msa0348530 MtrunA17_Chr5g0417301 22.059 612 342 20 1 538 1 551 1.55e-17 85.9
Msa0348530 MtrunA17_Chr6g0468401 23.662 355 192 10 1 295 1 336 2.45e-17 83.6
Msa0348530 MtrunA17_Chr4g0048471 25.818 275 148 9 160 384 41 309 2.81e-17 85.5
Msa0348530 MtrunA17_Chr8g0355071 31.053 190 106 7 246 417 115 297 3.61e-17 82.4
Msa0348530 MtrunA17_Chr5g0410261 24.242 462 235 18 166 540 188 621 9.44e-17 84.0
Msa0348530 MtrunA17_Chr5g0410301 23.570 437 256 15 167 540 169 590 7.79e-16 81.3
Msa0348530 MtrunA17_Chr3g0086071 27.907 215 137 5 341 539 14 226 3.36e-15 79.0
Msa0348530 MtrunA17_Chr6g0468141 26.016 246 154 7 91 319 6 240 4.59e-15 75.5
Msa0348530 MtrunA17_Chr5g0413821 25.106 235 120 5 1 194 1 220 6.09e-15 74.3
Msa0348530 MtrunA17_Chr1g0169941 28.708 209 114 9 245 428 79 277 1.04e-14 75.5
Msa0348530 MtrunA17_Chr1g0189311 50.000 72 36 0 173 244 1 72 1.14e-14 69.3
Msa0348530 MtrunA17_Chr7g0257251 33.987 153 79 5 268 400 5 155 1.68e-14 72.0
Msa0348530 MtrunA17_Chr5g0410161 22.542 417 262 12 170 539 332 734 1.88e-14 77.0
Msa0348530 MtrunA17_Chr1g0189301 36.441 118 49 2 67 160 2 117 5.35e-14 69.3
Msa0348530 MtrunA17_Chr6g0468191 23.348 227 137 5 1 201 1 216 9.49e-14 71.6
Msa0348530 MtrunA17_Chr5g0416571 24.229 227 142 4 1 218 1 206 2.13e-13 71.6
Msa0348530 MtrunA17_Chr3g0105571 26.389 360 194 10 151 450 96 444 3.16e-13 72.4
Msa0348530 MtrunA17_Chr7g0257261 25.410 244 140 6 1 208 1 238 8.85e-13 68.9
Msa0348530 MtrunA17_Chr8g0359881 22.581 651 347 30 19 545 21 638 8.10e-12 68.2
Msa0348530 MtrunA17_Chr8g0338851 28.807 243 116 13 162 361 120 348 1.43e-11 66.6
Msa0348530 MtrunA17_Chr5g0410351 23.220 323 206 8 249 539 275 587 3.15e-11 66.6
Msa0348530 MtrunA17_Chr2g0298531 26.295 251 130 9 144 349 193 433 3.46e-11 66.2
Msa0348530 MtrunA17_Chr6g0479001 29.741 232 107 12 163 349 206 426 3.89e-11 66.2
Msa0348530 MtrunA17_Chr3g0108821 23.243 370 227 9 107 427 107 468 5.55e-11 65.9
Msa0348530 MtrunA17_Chr3g0108811 23.577 369 227 10 107 427 119 480 6.01e-11 65.9
Msa0348530 MtrunA17_Chr8g0338681 26.786 168 100 3 247 396 78 240 6.32e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348530 AT3G07040.1 28.822 628 350 13 1 537 1 622 7.53e-72 247
Msa0348530 AT3G46730.1 29.467 638 329 20 1 540 1 615 1.65e-61 218
Msa0348530 AT1G50180.1 29.922 645 318 21 1 540 1 616 7.18e-58 207
Msa0348530 AT3G46710.1 28.037 642 337 21 1 547 1 612 8.14e-55 199
Msa0348530 AT3G46530.1 28.019 621 333 19 1 531 1 597 1.37e-54 198
Msa0348530 AT3G50950.2 27.619 630 353 20 1 545 1 612 1.78e-53 195
Msa0348530 AT3G50950.1 27.619 630 353 20 1 545 1 612 1.78e-53 195
Msa0348530 AT5G43470.3 27.726 642 338 24 1 538 1 620 7.64e-49 182
Msa0348530 AT5G43470.2 27.726 642 338 24 1 538 1 620 7.64e-49 182
Msa0348530 AT5G43470.4 27.726 642 338 24 1 538 1 620 7.64e-49 182
Msa0348530 AT5G43470.1 27.726 642 338 24 1 538 1 620 7.64e-49 182
Msa0348530 AT1G53350.1 26.025 634 355 19 1 537 1 617 1.57e-48 181
Msa0348530 AT5G35450.2 27.692 650 330 27 1 545 1 615 5.78e-48 179
Msa0348530 AT5G35450.1 27.692 650 330 27 1 545 1 615 5.78e-48 179
Msa0348530 AT1G58400.3 26.875 640 355 25 1 540 1 627 6.40e-47 176
Msa0348530 AT1G58400.2 26.875 640 355 25 1 540 1 627 6.40e-47 176
Msa0348530 AT1G59780.1 25.746 637 359 22 1 545 6 620 1.38e-46 175
Msa0348530 AT1G59780.2 25.746 637 359 22 1 545 1 615 1.40e-46 175
Msa0348530 AT5G48620.6 26.887 636 351 22 1 538 1 620 1.94e-46 175
Msa0348530 AT5G48620.1 26.887 636 351 22 1 538 1 620 1.94e-46 175
Msa0348530 AT5G48620.4 26.887 636 351 22 1 538 1 620 1.94e-46 175
Msa0348530 AT5G48620.2 26.887 636 351 22 1 538 1 620 1.94e-46 175
Msa0348530 AT5G48620.3 26.887 636 351 22 1 538 1 620 1.94e-46 175
Msa0348530 AT5G48620.5 26.887 636 351 22 1 538 1 620 1.94e-46 175
Msa0348530 AT1G58400.1 25.955 628 366 21 1 540 1 617 2.61e-44 169
Msa0348530 AT1G59218.1 26.291 639 362 22 1 539 1 630 6.53e-44 168
Msa0348530 AT1G59218.2 26.291 639 362 22 1 539 1 630 6.53e-44 168
Msa0348530 AT1G59218.3 26.291 639 362 22 1 539 1 630 6.53e-44 168
Msa0348530 AT1G58848.1 26.291 639 362 22 1 539 1 630 6.53e-44 168
Msa0348530 AT1G58848.2 26.291 639 362 22 1 539 1 630 6.53e-44 168
Msa0348530 AT1G58602.2 26.863 644 349 24 1 539 1 627 1.30e-43 167
Msa0348530 AT1G58602.1 26.863 644 349 24 1 539 1 627 1.30e-43 167
Msa0348530 AT1G58410.1 25.943 636 360 22 6 545 4 624 3.96e-43 165
Msa0348530 AT1G58410.4 25.943 636 360 22 6 545 4 624 3.96e-43 165
Msa0348530 AT1G58410.2 25.943 636 360 22 6 545 4 624 3.96e-43 165
Msa0348530 AT1G59124.1 26.489 638 355 24 1 539 1 623 4.05e-42 162
Msa0348530 AT1G58807.2 26.489 638 355 24 1 539 1 623 4.05e-42 162
Msa0348530 AT1G59124.2 26.341 634 361 23 1 539 1 623 1.02e-41 161
Msa0348530 AT1G58807.1 26.341 634 361 23 1 539 1 623 1.02e-41 161
Msa0348530 AT1G58390.1 24.420 647 363 21 1 539 1 629 1.61e-39 154
Msa0348530 AT1G58390.2 24.420 647 363 21 1 539 1 629 1.61e-39 154
Msa0348530 AT3G14460.1 24.115 593 356 17 31 540 36 617 1.64e-38 152
Msa0348530 AT1G58410.3 25.649 616 355 23 6 545 4 592 1.56e-33 136
Msa0348530 AT1G10920.1 26.667 480 250 19 147 537 37 503 2.34e-33 135
Msa0348530 AT1G10920.2 26.667 480 250 19 147 537 37 503 2.34e-33 135
Msa0348530 AT1G10920.4 26.667 480 250 19 147 537 37 503 2.34e-33 135
Msa0348530 AT3G14470.1 23.510 604 347 20 31 539 39 622 4.57e-33 135
Msa0348530 AT3G14470.2 23.510 604 347 20 31 539 39 622 4.57e-33 135
Msa0348530 AT1G59620.2 24.651 430 263 11 167 538 50 476 4.99e-31 128
Msa0348530 AT4G27220.1 26.047 430 237 19 168 530 137 552 6.13e-26 113
Msa0348530 AT4G27220.2 26.047 430 237 19 168 530 145 560 6.63e-26 113
Msa0348530 AT1G10920.5 28.707 317 170 14 272 537 22 333 7.03e-23 102
Msa0348530 AT1G10920.3 28.707 317 170 14 272 537 22 333 7.03e-23 102
Msa0348530 AT1G61190.2 28.153 444 240 19 172 547 180 612 5.96e-22 100
Msa0348530 AT1G61190.3 28.153 444 240 19 172 547 180 612 5.96e-22 100
Msa0348530 AT1G61300.1 26.991 452 247 19 153 535 49 486 8.44e-22 100
Msa0348530 AT1G61190.1 28.153 444 240 19 172 547 180 612 2.05e-21 99.4
Msa0348530 AT1G61180.1 26.802 444 243 19 172 547 179 608 1.26e-20 96.7
Msa0348530 AT1G61180.2 26.802 444 243 19 172 547 179 608 1.28e-20 96.7
Msa0348530 AT4G10780.1 25.328 458 256 20 153 538 161 604 1.72e-20 96.3
Msa0348530 AT4G10780.2 25.328 458 256 20 153 538 161 604 1.74e-20 96.3
Msa0348530 AT1G61190.4 27.664 441 221 18 172 547 180 587 1.97e-20 95.9
Msa0348530 AT1G61300.2 26.503 449 228 18 153 535 49 461 2.98e-20 95.1
Msa0348530 AT4G27190.1 25.170 441 244 18 157 526 156 581 2.88e-19 92.4
Msa0348530 AT1G12280.1 24.342 456 251 17 167 547 178 614 3.69e-19 92.0
Msa0348530 AT5G63020.1 22.961 466 269 18 153 547 162 608 5.70e-19 91.7
Msa0348530 AT5G47250.1 24.691 486 260 25 149 552 156 617 2.00e-17 86.7
Msa0348530 AT4G26090.1 22.374 514 319 17 92 545 113 606 8.61e-17 84.7
Msa0348530 AT1G15890.2 24.229 454 266 17 158 545 7 448 2.98e-16 82.8
Msa0348530 AT1G15890.1 24.229 454 266 17 158 545 167 608 3.88e-16 82.4
Msa0348530 AT5G43740.1 24.053 449 250 21 158 535 169 597 2.92e-15 79.7
Msa0348530 AT5G43740.2 24.053 449 250 21 158 535 169 597 2.92e-15 79.7
Msa0348530 AT4G33300.2 29.268 246 130 10 170 379 205 442 4.15e-15 79.3
Msa0348530 AT4G33300.1 29.268 246 130 10 170 379 205 442 4.15e-15 79.3
Msa0348530 AT5G43730.4 23.377 462 251 19 151 535 162 597 1.21e-14 77.8
Msa0348530 AT5G43730.1 23.377 462 251 19 151 535 162 597 1.21e-14 77.8
Msa0348530 AT5G43730.3 23.377 462 251 19 151 535 162 597 1.21e-14 77.8
Msa0348530 AT5G43730.2 23.377 462 251 19 151 535 162 597 1.21e-14 77.8
Msa0348530 AT5G43730.5 23.377 462 251 19 151 535 162 597 1.21e-14 77.8
Msa0348530 AT1G12290.4 25.836 329 189 15 246 531 243 559 2.06e-13 73.9
Msa0348530 AT1G12290.3 25.836 329 189 15 246 531 243 559 2.06e-13 73.9
Msa0348530 AT1G12290.2 25.836 329 189 15 246 531 243 559 2.06e-13 73.9
Msa0348530 AT1G12290.1 25.836 329 189 15 246 531 285 601 2.24e-13 73.6
Msa0348530 AT5G47260.1 23.853 436 260 20 168 545 172 593 3.98e-12 69.7

Find 85 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTAGAAACCTTGGATTTA+AGG 0.136336 3_1:-11068983 Msa0348530:CDS
AAAGCATGCATGCTATATTT+TGG 0.196628 3_1:-11069572 Msa0348530:CDS
TTTGCCATCAAAACCATCTT+TGG 0.237005 3_1:+11069397 None:intergenic
AATCTTATGTCTTTGTTTCA+TGG 0.245506 3_1:+11070546 None:intergenic
TATAAGTTTATAGTTGAAAA+TGG 0.258516 3_1:-11070463 Msa0348530:CDS
GCGCCTAACTGTTCCATCTA+TGG 0.292227 3_1:+11069274 None:intergenic
GACAGTTTCTCAAGATCTTT+CGG 0.318468 3_1:+11069794 None:intergenic
AAAGTTGATAAATAGAAGTT+TGG 0.327022 3_1:-11069429 Msa0348530:intron
TTGGGAACTGTTCTGTAAAA+AGG 0.330456 3_1:-11069846 Msa0348530:CDS
CTTTCGTATGACTCAGGTTC+AGG 0.348090 3_1:+11069042 None:intergenic
TCCATCTCCTGCAGACCCTT+TGG 0.365508 3_1:+11070103 None:intergenic
AATTATGTTCCTGATAACTT+AGG 0.366895 3_1:-11069086 Msa0348530:CDS
CTTCTGAAGGAGTTAAAACT+TGG 0.372077 3_1:-11070699 Msa0348530:CDS
TGAGTCGCCAAGAGATGAAT+TGG 0.380414 3_1:-11070347 Msa0348530:intron
CTTTGTCTTCAGAGAAAGCT+TGG 0.383685 3_1:-11069865 Msa0348530:CDS
CTCATGTTGGTTTCTGTGGT+TGG 0.385900 3_1:-11070295 Msa0348530:CDS
TTGGTTTCTGTGGTTGGTAT+GGG 0.390245 3_1:-11070289 Msa0348530:CDS
GTAGTCTCTCTAGAGCTTCC+TGG 0.390529 3_1:+11070439 None:intergenic
GAAAGAGTTGTTGATTGATA+TGG 0.391553 3_1:-11070161 Msa0348530:CDS
GTTGGTTTCTGTGGTTGGTA+TGG 0.393433 3_1:-11070290 Msa0348530:CDS
GGTCATGAACAAACCATAGA+TGG 0.397478 3_1:-11069287 Msa0348530:CDS
ACTACTGGAAATGAAAGTTT+TGG 0.397548 3_1:-11070421 Msa0348530:CDS
AAAGAAGCAACTCTATTGAT+AGG 0.407308 3_1:-11070823 Msa0348530:CDS
TTGGTTCAAGTTTCCAAAGA+TGG 0.409986 3_1:-11069410 Msa0348530:CDS
AAAAGGTTCCCTAAGTTATC+AGG 0.422263 3_1:+11069077 None:intergenic
CAACTAACCAATTCATCTCT+TGG 0.431651 3_1:+11070340 None:intergenic
AACAATGTGTTGACCAGTAC+TGG 0.439960 3_1:-11069230 Msa0348530:intron
ATTATGTTCCTGATAACTTA+GGG 0.443573 3_1:-11069085 Msa0348530:CDS
CCTGAGTCATACGAAAGTTA+AGG 0.459506 3_1:-11069036 Msa0348530:CDS
GTGGTTGGTATGGGAGGACT+TGG 0.464917 3_1:-11070280 Msa0348530:CDS
GCCTACACCAAAGGGTCTGC+AGG 0.469432 3_1:-11070110 Msa0348530:CDS
AGAACTGGATGAACATTTCA+TGG 0.477096 3_1:-11069168 Msa0348530:CDS
CATGACCTTCATGCATCAAA+TGG 0.479608 3_1:+11069303 None:intergenic
AAGGTTATTCCTAGATCCAT+TGG 0.483666 3_1:-11069017 Msa0348530:intron
CGTTTGATGATGTAGTCCTC+AGG 0.484939 3_1:+11069542 None:intergenic
ATTGAAGAGAACCAAGTTGT+GGG 0.486582 3_1:-11070373 Msa0348530:CDS
TCAGGTACGTTAGGTGGAAA+AGG 0.491559 3_1:+11069060 None:intergenic
TTTGTCTTCAGAGAAAGCTT+GGG 0.491610 3_1:-11069864 Msa0348530:CDS
AGTAGCTTACCAATGGATCT+AGG 0.493191 3_1:+11069008 None:intergenic
GTTTCTGTGGTTGGTATGGG+AGG 0.493581 3_1:-11070286 Msa0348530:CDS
GCTACTGAACTTAGAAACCT+TGG 0.498986 3_1:-11068991 Msa0348530:CDS
TGAGCTCATGTTGGTTTCTG+TGG 0.499069 3_1:-11070299 Msa0348530:CDS
AGCTACTTCAATTGTTCTAG+TGG 0.499763 3_1:+11069934 None:intergenic
GATACAAGGGCTGCTGATGA+AGG 0.501638 3_1:-11070733 Msa0348530:CDS
TTCTCAAGGATGCAGATACA+AGG 0.504223 3_1:-11070747 Msa0348530:CDS
CATTGAAGAGAACCAAGTTG+TGG 0.508627 3_1:-11070374 Msa0348530:CDS
ATAGCATGCATGCTTTCAAA+TGG 0.511001 3_1:+11069579 None:intergenic
GCGACTCAAATCCCACAACT+TGG 0.514126 3_1:+11070362 None:intergenic
GACTCAGGTTCAGGTACGTT+AGG 0.515084 3_1:+11069051 None:intergenic
AATTCCTGAGTTACCAGTAC+TGG 0.520101 3_1:+11069217 None:intergenic
ACCAAAGGGTCTGCAGGAGA+TGG 0.523425 3_1:-11070104 Msa0348530:CDS
TTGAGTTTGCCTTAAATCCA+AGG 0.529958 3_1:+11068974 None:intergenic
AGAAACCAACATGAGCTCAT+TGG 0.533070 3_1:+11070303 None:intergenic
CCTTAACTTTCGTATGACTC+AGG 0.536002 3_1:+11069036 None:intergenic
AGCAATGAGCCTACACCAAA+GGG 0.538264 3_1:-11070118 Msa0348530:CDS
CTGGATGAACATTTCATGGA+TGG 0.542842 3_1:-11069164 Msa0348530:CDS
TCCTGCAGACCCTTTGGTGT+AGG 0.543616 3_1:+11070109 None:intergenic
ATGCATGCTTTCAAATGGTA+AGG 0.545028 3_1:+11069584 None:intergenic
CACATCTGACTGGTCTAATG+AGG 0.547489 3_1:-11069634 Msa0348530:CDS
TTTATAGTTGAAAATGGACC+AGG 0.549170 3_1:-11070457 Msa0348530:CDS
TCTTCTGCAACTTCCTCCAA+TGG 0.552936 3_1:+11069461 None:intergenic
GAATGAGCACACAAGACCAT+TGG 0.556073 3_1:-11069477 Msa0348530:CDS
GGAAGCTCTAGAGAGACTAC+TGG 0.563793 3_1:-11070436 Msa0348530:CDS
AAACCATAGATGGAACAGTT+AGG 0.567203 3_1:-11069277 Msa0348530:CDS
AAGACTTACTCGACAATGGA+TGG 0.569125 3_1:-11069516 Msa0348530:CDS
GGTGAGAAAATATCTGAGAT+CGG 0.571558 3_1:-11069672 Msa0348530:CDS
TTCTGAAGGAGTTAAAACTT+GGG 0.574112 3_1:-11070698 Msa0348530:CDS
TGAGCACACAAGACCATTGG+AGG 0.574508 3_1:-11069474 Msa0348530:CDS
CAGCAATGAGCCTACACCAA+AGG 0.580750 3_1:-11070119 Msa0348530:CDS
ACTCTATTGATAGGTGTACA+TGG 0.582841 3_1:-11070814 Msa0348530:CDS
TCAGGTTCAGGTACGTTAGG+TGG 0.584629 3_1:+11069054 None:intergenic
AGGGCTGCTGATGAAGGAGA+AGG 0.589217 3_1:-11070727 Msa0348530:CDS
GGAGAAGGAGGATCTTCTGA+AGG 0.590021 3_1:-11070712 Msa0348530:CDS
GCAAAAGACTTACTCGACAA+TGG 0.593327 3_1:-11069520 Msa0348530:CDS
AAGGGTCTGCAGGAGATGGA+TGG 0.597196 3_1:-11070100 Msa0348530:CDS
GAGCATCAAAGCATTTCTCA+AGG 0.604147 3_1:-11070761 Msa0348530:CDS
GGGAACCAATGAGCTCATGT+TGG 0.622303 3_1:-11070308 Msa0348530:CDS
ACTCGACAATGGATGGCTGA+AGG 0.626304 3_1:-11069509 Msa0348530:CDS
AAAATGTCGAGGACTACCAC+TGG 0.630254 3_1:-11069756 Msa0348530:CDS
GAGAACAATACACATCTGAC+TGG 0.631403 3_1:-11069644 Msa0348530:CDS
GCTGCTGATGAAGGAGAAGG+AGG 0.640534 3_1:-11070724 Msa0348530:CDS
TCTCAAGGATGCAGATACAA+GGG 0.661725 3_1:-11070746 Msa0348530:CDS
AAATCAAAGAAAGAAGTGTG+AGG 0.697727 3_1:-11070486 Msa0348530:CDS
AGATCTTGAGAAACTGTCCG+AGG 0.701740 3_1:-11069789 Msa0348530:CDS
CCAATAGCCACAATTGCCAG+TGG 0.713671 3_1:+11069740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAGTTTATAGTTGAAAA+TGG - chr3_1:11069380-11069399 Msa0348530:CDS 15.0%
!! TATAAGTTTATAGTTGAAAA+TGG - chr3_1:11069380-11069399 Msa0348530:CDS 15.0%
!!! AAAGTTGATAAATAGAAGTT+TGG - chr3_1:11070414-11070433 Msa0348530:CDS 20.0%
!!! AAAGTTGATAAATAGAAGTT+TGG - chr3_1:11070414-11070433 Msa0348530:CDS 20.0%
! TGATTGTTATAGCATGTATT+TGG - chr3_1:11069211-11069230 Msa0348530:intron 25.0%
!! AATCTTATGTCTTTGTTTCA+TGG + chr3_1:11069300-11069319 None:intergenic 25.0%
! TATGAAAAACATCAAGTCTT+CGG - chr3_1:11069328-11069347 Msa0348530:CDS 25.0%
! GAGAATATCTTGAATCAAAA+AGG - chr3_1:11069789-11069808 Msa0348530:CDS 25.0%
! GCTATGTCTAATAATAAGAA+AGG - chr3_1:11069869-11069888 Msa0348530:CDS 25.0%
!! TTGAAGTAGCTGAATATTTT+AGG - chr3_1:11069921-11069940 Msa0348530:CDS 25.0%
!! ACATTTTTGAACAATTTCCT+CGG + chr3_1:11070074-11070093 None:intergenic 25.0%
!!! ATATTTTGGTATATATCCTG+AGG - chr3_1:11070285-11070304 Msa0348530:CDS 25.0%
!!! TACTTTTAAAAGCTTGAACT+TGG + chr3_1:11070713-11070732 None:intergenic 25.0%
! AATTATGTTCCTGATAACTT+AGG - chr3_1:11070757-11070776 Msa0348530:CDS 25.0%
! ATTATGTTCCTGATAACTTA+GGG - chr3_1:11070758-11070777 Msa0348530:CDS 25.0%
! TGATTGTTATAGCATGTATT+TGG - chr3_1:11069211-11069230 Msa0348530:intron 25.0%
!! AATCTTATGTCTTTGTTTCA+TGG + chr3_1:11069300-11069319 None:intergenic 25.0%
! TATGAAAAACATCAAGTCTT+CGG - chr3_1:11069328-11069347 Msa0348530:CDS 25.0%
! GAGAATATCTTGAATCAAAA+AGG - chr3_1:11069789-11069808 Msa0348530:CDS 25.0%
! GCTATGTCTAATAATAAGAA+AGG - chr3_1:11069869-11069888 Msa0348530:CDS 25.0%
!! TTGAAGTAGCTGAATATTTT+AGG - chr3_1:11069921-11069940 Msa0348530:CDS 25.0%
!! ACATTTTTGAACAATTTCCT+CGG + chr3_1:11070074-11070093 None:intergenic 25.0%
!!! ATATTTTGGTATATATCCTG+AGG - chr3_1:11070285-11070304 Msa0348530:CDS 25.0%
!!! TACTTTTAAAAGCTTGAACT+TGG + chr3_1:11070713-11070732 None:intergenic 25.0%
! AATTATGTTCCTGATAACTT+AGG - chr3_1:11070757-11070776 Msa0348530:CDS 25.0%
! ATTATGTTCCTGATAACTTA+GGG - chr3_1:11070758-11070777 Msa0348530:CDS 25.0%
AAAGAAGCAACTCTATTGAT+AGG - chr3_1:11069020-11069039 Msa0348530:CDS 30.0%
! TTCTGAAGGAGTTAAAACTT+GGG - chr3_1:11069145-11069164 Msa0348530:CDS 30.0%
ATAGCATGTATTTGGTACAA+AGG - chr3_1:11069219-11069238 Msa0348530:intron 30.0%
TAGCATGTATTTGGTACAAA+GGG - chr3_1:11069220-11069239 Msa0348530:intron 30.0%
! AAATCAAAGAAAGAAGTGTG+AGG - chr3_1:11069357-11069376 Msa0348530:CDS 30.0%
TTTATAGTTGAAAATGGACC+AGG - chr3_1:11069386-11069405 Msa0348530:CDS 30.0%
! ACTACTGGAAATGAAAGTTT+TGG - chr3_1:11069422-11069441 Msa0348530:intron 30.0%
! AGATGAATTGGTTAGTTGTT+TGG - chr3_1:11069508-11069527 Msa0348530:CDS 30.0%
! GAAAGAGTTGTTGATTGATA+TGG - chr3_1:11069682-11069701 Msa0348530:intron 30.0%
! TATGGTAAAGAAGTTTTGCA+AGG - chr3_1:11069700-11069719 Msa0348530:intron 30.0%
!! TCTTGAATCAAAAAGGTACT+TGG - chr3_1:11069796-11069815 Msa0348530:CDS 30.0%
!!! TGGTGTTTTTTGATGATGTT+TGG - chr3_1:11069816-11069835 Msa0348530:CDS 30.0%
GAAATTGTTCAAAAATGTCG+AGG - chr3_1:11070076-11070095 Msa0348530:intron 30.0%
!! AATCCAAAACCATTTTTGAG+TGG - chr3_1:11070143-11070162 Msa0348530:CDS 30.0%
!!! ATCCAAAACCATTTTTGAGT+GGG - chr3_1:11070144-11070163 Msa0348530:CDS 30.0%
! AAAGCATGCATGCTATATTT+TGG - chr3_1:11070271-11070290 Msa0348530:CDS 30.0%
ACTTAGAAACCTTGGATTTA+AGG - chr3_1:11070860-11070879 Msa0348530:CDS 30.0%
AAAGAAGCAACTCTATTGAT+AGG - chr3_1:11069020-11069039 Msa0348530:CDS 30.0%
! TTCTGAAGGAGTTAAAACTT+GGG - chr3_1:11069145-11069164 Msa0348530:CDS 30.0%
ATAGCATGTATTTGGTACAA+AGG - chr3_1:11069219-11069238 Msa0348530:intron 30.0%
TAGCATGTATTTGGTACAAA+GGG - chr3_1:11069220-11069239 Msa0348530:intron 30.0%
! AAATCAAAGAAAGAAGTGTG+AGG - chr3_1:11069357-11069376 Msa0348530:CDS 30.0%
TTTATAGTTGAAAATGGACC+AGG - chr3_1:11069386-11069405 Msa0348530:CDS 30.0%
! ACTACTGGAAATGAAAGTTT+TGG - chr3_1:11069422-11069441 Msa0348530:intron 30.0%
! AGATGAATTGGTTAGTTGTT+TGG - chr3_1:11069508-11069527 Msa0348530:CDS 30.0%
! GAAAGAGTTGTTGATTGATA+TGG - chr3_1:11069682-11069701 Msa0348530:intron 30.0%
! TATGGTAAAGAAGTTTTGCA+AGG - chr3_1:11069700-11069719 Msa0348530:intron 30.0%
!! TCTTGAATCAAAAAGGTACT+TGG - chr3_1:11069796-11069815 Msa0348530:CDS 30.0%
!!! TGGTGTTTTTTGATGATGTT+TGG - chr3_1:11069816-11069835 Msa0348530:CDS 30.0%
GAAATTGTTCAAAAATGTCG+AGG - chr3_1:11070076-11070095 Msa0348530:intron 30.0%
!! AATCCAAAACCATTTTTGAG+TGG - chr3_1:11070143-11070162 Msa0348530:CDS 30.0%
!!! ATCCAAAACCATTTTTGAGT+GGG - chr3_1:11070144-11070163 Msa0348530:CDS 30.0%
! AAAGCATGCATGCTATATTT+TGG - chr3_1:11070271-11070290 Msa0348530:CDS 30.0%
ACTTAGAAACCTTGGATTTA+AGG - chr3_1:11070860-11070879 Msa0348530:CDS 30.0%
ACTCTATTGATAGGTGTACA+TGG - chr3_1:11069029-11069048 Msa0348530:CDS 35.0%
! CTTCTGAAGGAGTTAAAACT+TGG - chr3_1:11069144-11069163 Msa0348530:CDS 35.0%
GTACAAAGGGAGAATTATTC+TGG - chr3_1:11069233-11069252 Msa0348530:CDS 35.0%
ATGCATAGCTCCAATGAAAA+AGG - chr3_1:11069256-11069275 Msa0348530:CDS 35.0%
!! ACTTGAGCTACCTTTTTCAT+TGG + chr3_1:11069269-11069288 None:intergenic 35.0%
!! AAGTTTTGGTGATCTTCGAA+TGG - chr3_1:11069436-11069455 Msa0348530:intron 35.0%
ATTGAAGAGAACCAAGTTGT+GGG - chr3_1:11069470-11069489 Msa0348530:CDS 35.0%
CAACTAACCAATTCATCTCT+TGG + chr3_1:11069506-11069525 None:intergenic 35.0%
! TGAATTGGTTAGTTGTTTGG+TGG - chr3_1:11069511-11069530 Msa0348530:CDS 35.0%
AGCTACTTCAATTGTTCTAG+TGG + chr3_1:11069912-11069931 None:intergenic 35.0%
TTTGTCTTCAGAGAAAGCTT+GGG - chr3_1:11069979-11069998 Msa0348530:intron 35.0%
TTGGGAACTGTTCTGTAAAA+AGG - chr3_1:11069997-11070016 Msa0348530:intron 35.0%
GACAGTTTCTCAAGATCTTT+CGG + chr3_1:11070052-11070071 None:intergenic 35.0%
! TTCCCACTCAAAAATGGTTT+TGG + chr3_1:11070149-11070168 None:intergenic 35.0%
!!! AACCATTTTTGAGTGGGAAA+AGG - chr3_1:11070150-11070169 Msa0348530:CDS 35.0%
! GGTGAGAAAATATCTGAGAT+CGG - chr3_1:11070171-11070190 Msa0348530:CDS 35.0%
ATGCATGCTTTCAAATGGTA+AGG + chr3_1:11070262-11070281 None:intergenic 35.0%
ATAGCATGCATGCTTTCAAA+TGG + chr3_1:11070267-11070286 None:intergenic 35.0%
! TTGGTTCAAGTTTCCAAAGA+TGG - chr3_1:11070433-11070452 Msa0348530:CDS 35.0%
!!! GTTTCCAAAGATGGTTTTGA+TGG - chr3_1:11070442-11070461 Msa0348530:CDS 35.0%
TTTGCCATCAAAACCATCTT+TGG + chr3_1:11070449-11070468 None:intergenic 35.0%
!! TTTTGCCATTTGATGCATGA+AGG - chr3_1:11070535-11070554 Msa0348530:CDS 35.0%
AAACCATAGATGGAACAGTT+AGG - chr3_1:11070566-11070585 Msa0348530:CDS 35.0%
AGAACTGGATGAACATTTCA+TGG - chr3_1:11070675-11070694 Msa0348530:CDS 35.0%
AAAAGGTTCCCTAAGTTATC+AGG + chr3_1:11070769-11070788 None:intergenic 35.0%
AAGGTTATTCCTAGATCCAT+TGG - chr3_1:11070826-11070845 Msa0348530:CDS 35.0%
TAAGTTCAGTAGCTTACCAA+TGG + chr3_1:11070845-11070864 None:intergenic 35.0%
TTGAGTTTGCCTTAAATCCA+AGG + chr3_1:11070872-11070891 None:intergenic 35.0%
ACTCTATTGATAGGTGTACA+TGG - chr3_1:11069029-11069048 Msa0348530:CDS 35.0%
! CTTCTGAAGGAGTTAAAACT+TGG - chr3_1:11069144-11069163 Msa0348530:CDS 35.0%
GTACAAAGGGAGAATTATTC+TGG - chr3_1:11069233-11069252 Msa0348530:CDS 35.0%
ATGCATAGCTCCAATGAAAA+AGG - chr3_1:11069256-11069275 Msa0348530:CDS 35.0%
!! ACTTGAGCTACCTTTTTCAT+TGG + chr3_1:11069269-11069288 None:intergenic 35.0%
!! AAGTTTTGGTGATCTTCGAA+TGG - chr3_1:11069436-11069455 Msa0348530:intron 35.0%
ATTGAAGAGAACCAAGTTGT+GGG - chr3_1:11069470-11069489 Msa0348530:CDS 35.0%
CAACTAACCAATTCATCTCT+TGG + chr3_1:11069506-11069525 None:intergenic 35.0%
! TGAATTGGTTAGTTGTTTGG+TGG - chr3_1:11069511-11069530 Msa0348530:CDS 35.0%
AGCTACTTCAATTGTTCTAG+TGG + chr3_1:11069912-11069931 None:intergenic 35.0%
TTTGTCTTCAGAGAAAGCTT+GGG - chr3_1:11069979-11069998 Msa0348530:intron 35.0%
TTGGGAACTGTTCTGTAAAA+AGG - chr3_1:11069997-11070016 Msa0348530:intron 35.0%
GACAGTTTCTCAAGATCTTT+CGG + chr3_1:11070052-11070071 None:intergenic 35.0%
! TTCCCACTCAAAAATGGTTT+TGG + chr3_1:11070149-11070168 None:intergenic 35.0%
!!! AACCATTTTTGAGTGGGAAA+AGG - chr3_1:11070150-11070169 Msa0348530:CDS 35.0%
! GGTGAGAAAATATCTGAGAT+CGG - chr3_1:11070171-11070190 Msa0348530:CDS 35.0%
ATGCATGCTTTCAAATGGTA+AGG + chr3_1:11070262-11070281 None:intergenic 35.0%
ATAGCATGCATGCTTTCAAA+TGG + chr3_1:11070267-11070286 None:intergenic 35.0%
! TTGGTTCAAGTTTCCAAAGA+TGG - chr3_1:11070433-11070452 Msa0348530:CDS 35.0%
!!! GTTTCCAAAGATGGTTTTGA+TGG - chr3_1:11070442-11070461 Msa0348530:CDS 35.0%
TTTGCCATCAAAACCATCTT+TGG + chr3_1:11070449-11070468 None:intergenic 35.0%
!! TTTTGCCATTTGATGCATGA+AGG - chr3_1:11070535-11070554 Msa0348530:CDS 35.0%
AAACCATAGATGGAACAGTT+AGG - chr3_1:11070566-11070585 Msa0348530:CDS 35.0%
AGAACTGGATGAACATTTCA+TGG - chr3_1:11070675-11070694 Msa0348530:CDS 35.0%
AAAAGGTTCCCTAAGTTATC+AGG + chr3_1:11070769-11070788 None:intergenic 35.0%
AAGGTTATTCCTAGATCCAT+TGG - chr3_1:11070826-11070845 Msa0348530:CDS 35.0%
TAAGTTCAGTAGCTTACCAA+TGG + chr3_1:11070845-11070864 None:intergenic 35.0%
TTGAGTTTGCCTTAAATCCA+AGG + chr3_1:11070872-11070891 None:intergenic 35.0%
! GAGCATCAAAGCATTTCTCA+AGG - chr3_1:11069082-11069101 Msa0348530:CDS 40.0%
TTCTCAAGGATGCAGATACA+AGG - chr3_1:11069096-11069115 Msa0348530:CDS 40.0%
TCTCAAGGATGCAGATACAA+GGG - chr3_1:11069097-11069116 Msa0348530:CDS 40.0%
CATTGAAGAGAACCAAGTTG+TGG - chr3_1:11069469-11069488 Msa0348530:CDS 40.0%
! ATTGGTTAGTTGTTTGGTGG+AGG - chr3_1:11069514-11069533 Msa0348530:CDS 40.0%
! TTGGTTAGTTGTTTGGTGGA+GGG - chr3_1:11069515-11069534 Msa0348530:CDS 40.0%
AGAAACCAACATGAGCTCAT+TGG + chr3_1:11069543-11069562 None:intergenic 40.0%
! TTGGTTTCTGTGGTTGGTAT+GGG - chr3_1:11069554-11069573 Msa0348530:CDS 40.0%
CTTTGTCTTCAGAGAAAGCT+TGG - chr3_1:11069978-11069997 Msa0348530:intron 40.0%
! TCTTTCGGACACAGATTTTC+AGG + chr3_1:11070037-11070056 None:intergenic 40.0%
! CACCTTTTCCCACTCAAAAA+TGG + chr3_1:11070155-11070174 None:intergenic 40.0%
GAGAACAATACACATCTGAC+TGG - chr3_1:11070199-11070218 Msa0348530:CDS 40.0%
GCAAAAGACTTACTCGACAA+TGG - chr3_1:11070323-11070342 Msa0348530:intron 40.0%
AAGACTTACTCGACAATGGA+TGG - chr3_1:11070327-11070346 Msa0348530:intron 40.0%
CATGACCTTCATGCATCAAA+TGG + chr3_1:11070543-11070562 None:intergenic 40.0%
GGTCATGAACAAACCATAGA+TGG - chr3_1:11070556-11070575 Msa0348530:CDS 40.0%
! AACAATGTGTTGACCAGTAC+TGG - chr3_1:11070613-11070632 Msa0348530:intron 40.0%
AATTCCTGAGTTACCAGTAC+TGG + chr3_1:11070629-11070648 None:intergenic 40.0%
! TGTTTTCGACAAAGCAGAAC+TGG - chr3_1:11070660-11070679 Msa0348530:CDS 40.0%
CTGGATGAACATTTCATGGA+TGG - chr3_1:11070679-11070698 Msa0348530:CDS 40.0%
CCTTAACTTTCGTATGACTC+AGG + chr3_1:11070810-11070829 None:intergenic 40.0%
CCTGAGTCATACGAAAGTTA+AGG - chr3_1:11070807-11070826 Msa0348530:CDS 40.0%
AGTAGCTTACCAATGGATCT+AGG + chr3_1:11070838-11070857 None:intergenic 40.0%
GCTACTGAACTTAGAAACCT+TGG - chr3_1:11070852-11070871 Msa0348530:CDS 40.0%
! GAGCATCAAAGCATTTCTCA+AGG - chr3_1:11069082-11069101 Msa0348530:CDS 40.0%
TTCTCAAGGATGCAGATACA+AGG - chr3_1:11069096-11069115 Msa0348530:CDS 40.0%
TCTCAAGGATGCAGATACAA+GGG - chr3_1:11069097-11069116 Msa0348530:CDS 40.0%
CATTGAAGAGAACCAAGTTG+TGG - chr3_1:11069469-11069488 Msa0348530:CDS 40.0%
! ATTGGTTAGTTGTTTGGTGG+AGG - chr3_1:11069514-11069533 Msa0348530:CDS 40.0%
! TTGGTTAGTTGTTTGGTGGA+GGG - chr3_1:11069515-11069534 Msa0348530:CDS 40.0%
AGAAACCAACATGAGCTCAT+TGG + chr3_1:11069543-11069562 None:intergenic 40.0%
! TTGGTTTCTGTGGTTGGTAT+GGG - chr3_1:11069554-11069573 Msa0348530:CDS 40.0%
CTTTGTCTTCAGAGAAAGCT+TGG - chr3_1:11069978-11069997 Msa0348530:intron 40.0%
! TCTTTCGGACACAGATTTTC+AGG + chr3_1:11070037-11070056 None:intergenic 40.0%
! CACCTTTTCCCACTCAAAAA+TGG + chr3_1:11070155-11070174 None:intergenic 40.0%
GAGAACAATACACATCTGAC+TGG - chr3_1:11070199-11070218 Msa0348530:CDS 40.0%
GCAAAAGACTTACTCGACAA+TGG - chr3_1:11070323-11070342 Msa0348530:intron 40.0%
AAGACTTACTCGACAATGGA+TGG - chr3_1:11070327-11070346 Msa0348530:intron 40.0%
CATGACCTTCATGCATCAAA+TGG + chr3_1:11070543-11070562 None:intergenic 40.0%
GGTCATGAACAAACCATAGA+TGG - chr3_1:11070556-11070575 Msa0348530:CDS 40.0%
! AACAATGTGTTGACCAGTAC+TGG - chr3_1:11070613-11070632 Msa0348530:intron 40.0%
AATTCCTGAGTTACCAGTAC+TGG + chr3_1:11070629-11070648 None:intergenic 40.0%
! TGTTTTCGACAAAGCAGAAC+TGG - chr3_1:11070660-11070679 Msa0348530:CDS 40.0%
CTGGATGAACATTTCATGGA+TGG - chr3_1:11070679-11070698 Msa0348530:CDS 40.0%
CCTTAACTTTCGTATGACTC+AGG + chr3_1:11070810-11070829 None:intergenic 40.0%
CCTGAGTCATACGAAAGTTA+AGG - chr3_1:11070807-11070826 Msa0348530:CDS 40.0%
AGTAGCTTACCAATGGATCT+AGG + chr3_1:11070838-11070857 None:intergenic 40.0%
GCTACTGAACTTAGAAACCT+TGG - chr3_1:11070852-11070871 Msa0348530:CDS 40.0%
TGAGTCGCCAAGAGATGAAT+TGG - chr3_1:11069496-11069515 Msa0348530:CDS 45.0%
!! TGAGCTCATGTTGGTTTCTG+TGG - chr3_1:11069544-11069563 Msa0348530:CDS 45.0%
!! CTCATGTTGGTTTCTGTGGT+TGG - chr3_1:11069548-11069567 Msa0348530:CDS 45.0%
! GTTGGTTTCTGTGGTTGGTA+TGG - chr3_1:11069553-11069572 Msa0348530:CDS 45.0%
AGCAATGAGCCTACACCAAA+GGG - chr3_1:11069725-11069744 Msa0348530:intron 45.0%
AGATCTTGAGAAACTGTCCG+AGG - chr3_1:11070054-11070073 Msa0348530:intron 45.0%
AAAATGTCGAGGACTACCAC+TGG - chr3_1:11070087-11070106 Msa0348530:CDS 45.0%
!! CACATCTGACTGGTCTAATG+AGG - chr3_1:11070209-11070228 Msa0348530:CDS 45.0%
!! CGTTTGATGATGTAGTCCTC+AGG + chr3_1:11070304-11070323 None:intergenic 45.0%
GAATGAGCACACAAGACCAT+TGG - chr3_1:11070366-11070385 Msa0348530:CDS 45.0%
TCTTCTGCAACTTCCTCCAA+TGG + chr3_1:11070385-11070404 None:intergenic 45.0%
!! TTGACCAGTACTGGTAACTC+AGG - chr3_1:11070622-11070641 Msa0348530:intron 45.0%
TCAGGTACGTTAGGTGGAAA+AGG + chr3_1:11070786-11070805 None:intergenic 45.0%
CTTTCGTATGACTCAGGTTC+AGG + chr3_1:11070804-11070823 None:intergenic 45.0%
TGAGTCGCCAAGAGATGAAT+TGG - chr3_1:11069496-11069515 Msa0348530:CDS 45.0%
!! TGAGCTCATGTTGGTTTCTG+TGG - chr3_1:11069544-11069563 Msa0348530:CDS 45.0%
!! CTCATGTTGGTTTCTGTGGT+TGG - chr3_1:11069548-11069567 Msa0348530:CDS 45.0%
! GTTGGTTTCTGTGGTTGGTA+TGG - chr3_1:11069553-11069572 Msa0348530:CDS 45.0%
AGCAATGAGCCTACACCAAA+GGG - chr3_1:11069725-11069744 Msa0348530:intron 45.0%
AGATCTTGAGAAACTGTCCG+AGG - chr3_1:11070054-11070073 Msa0348530:intron 45.0%
AAAATGTCGAGGACTACCAC+TGG - chr3_1:11070087-11070106 Msa0348530:CDS 45.0%
!! CACATCTGACTGGTCTAATG+AGG - chr3_1:11070209-11070228 Msa0348530:CDS 45.0%
!! CGTTTGATGATGTAGTCCTC+AGG + chr3_1:11070304-11070323 None:intergenic 45.0%
GAATGAGCACACAAGACCAT+TGG - chr3_1:11070366-11070385 Msa0348530:CDS 45.0%
TCTTCTGCAACTTCCTCCAA+TGG + chr3_1:11070385-11070404 None:intergenic 45.0%
!! TTGACCAGTACTGGTAACTC+AGG - chr3_1:11070622-11070641 Msa0348530:intron 45.0%
TCAGGTACGTTAGGTGGAAA+AGG + chr3_1:11070786-11070805 None:intergenic 45.0%
CTTTCGTATGACTCAGGTTC+AGG + chr3_1:11070804-11070823 None:intergenic 45.0%
GATACAAGGGCTGCTGATGA+AGG - chr3_1:11069110-11069129 Msa0348530:CDS 50.0%
GGAGAAGGAGGATCTTCTGA+AGG - chr3_1:11069131-11069150 Msa0348530:CDS 50.0%
!! GTAGTCTCTCTAGAGCTTCC+TGG + chr3_1:11069407-11069426 None:intergenic 50.0%
!! GGAAGCTCTAGAGAGACTAC+TGG - chr3_1:11069407-11069426 Msa0348530:CDS 50.0%
GCGACTCAAATCCCACAACT+TGG + chr3_1:11069484-11069503 None:intergenic 50.0%
GGGAACCAATGAGCTCATGT+TGG - chr3_1:11069535-11069554 Msa0348530:CDS 50.0%
! GTTTCTGTGGTTGGTATGGG+AGG - chr3_1:11069557-11069576 Msa0348530:CDS 50.0%
CAGCAATGAGCCTACACCAA+AGG - chr3_1:11069724-11069743 Msa0348530:intron 50.0%
AGGACTACCACTGGCAATTG+TGG - chr3_1:11070096-11070115 Msa0348530:CDS 50.0%
CCAATAGCCACAATTGCCAG+TGG + chr3_1:11070106-11070125 None:intergenic 50.0%
CCACTGGCAATTGTGGCTAT+TGG - chr3_1:11070103-11070122 Msa0348530:CDS 50.0%
CTGGCAATTGTGGCTATTGG+TGG - chr3_1:11070106-11070125 Msa0348530:CDS 50.0%
ACTCGACAATGGATGGCTGA+AGG - chr3_1:11070334-11070353 Msa0348530:intron 50.0%
TGAGCACACAAGACCATTGG+AGG - chr3_1:11070369-11070388 Msa0348530:CDS 50.0%
GCGCCTAACTGTTCCATCTA+TGG + chr3_1:11070572-11070591 None:intergenic 50.0%
TCAGGTTCAGGTACGTTAGG+TGG + chr3_1:11070792-11070811 None:intergenic 50.0%
GACTCAGGTTCAGGTACGTT+AGG + chr3_1:11070795-11070814 None:intergenic 50.0%
GATACAAGGGCTGCTGATGA+AGG - chr3_1:11069110-11069129 Msa0348530:CDS 50.0%
GGAGAAGGAGGATCTTCTGA+AGG - chr3_1:11069131-11069150 Msa0348530:CDS 50.0%
!! GTAGTCTCTCTAGAGCTTCC+TGG + chr3_1:11069407-11069426 None:intergenic 50.0%
!! GGAAGCTCTAGAGAGACTAC+TGG - chr3_1:11069407-11069426 Msa0348530:CDS 50.0%
GCGACTCAAATCCCACAACT+TGG + chr3_1:11069484-11069503 None:intergenic 50.0%
GGGAACCAATGAGCTCATGT+TGG - chr3_1:11069535-11069554 Msa0348530:CDS 50.0%
! GTTTCTGTGGTTGGTATGGG+AGG - chr3_1:11069557-11069576 Msa0348530:CDS 50.0%
CAGCAATGAGCCTACACCAA+AGG - chr3_1:11069724-11069743 Msa0348530:intron 50.0%
AGGACTACCACTGGCAATTG+TGG - chr3_1:11070096-11070115 Msa0348530:CDS 50.0%
CCAATAGCCACAATTGCCAG+TGG + chr3_1:11070106-11070125 None:intergenic 50.0%
CCACTGGCAATTGTGGCTAT+TGG - chr3_1:11070103-11070122 Msa0348530:CDS 50.0%
CTGGCAATTGTGGCTATTGG+TGG - chr3_1:11070106-11070125 Msa0348530:CDS 50.0%
ACTCGACAATGGATGGCTGA+AGG - chr3_1:11070334-11070353 Msa0348530:intron 50.0%
TGAGCACACAAGACCATTGG+AGG - chr3_1:11070369-11070388 Msa0348530:CDS 50.0%
GCGCCTAACTGTTCCATCTA+TGG + chr3_1:11070572-11070591 None:intergenic 50.0%
TCAGGTTCAGGTACGTTAGG+TGG + chr3_1:11070792-11070811 None:intergenic 50.0%
GACTCAGGTTCAGGTACGTT+AGG + chr3_1:11070795-11070814 None:intergenic 50.0%
AGGGCTGCTGATGAAGGAGA+AGG - chr3_1:11069116-11069135 Msa0348530:CDS 55.0%
GCTGCTGATGAAGGAGAAGG+AGG - chr3_1:11069119-11069138 Msa0348530:CDS 55.0%
! GTGGTTGGTATGGGAGGACT+TGG - chr3_1:11069563-11069582 Msa0348530:CDS 55.0%
! TCCTGCAGACCCTTTGGTGT+AGG + chr3_1:11069737-11069756 None:intergenic 55.0%
ACCAAAGGGTCTGCAGGAGA+TGG - chr3_1:11069739-11069758 Msa0348530:intron 55.0%
TCCATCTCCTGCAGACCCTT+TGG + chr3_1:11069743-11069762 None:intergenic 55.0%
AAGGGTCTGCAGGAGATGGA+TGG - chr3_1:11069743-11069762 Msa0348530:intron 55.0%
AGGGCTGCTGATGAAGGAGA+AGG - chr3_1:11069116-11069135 Msa0348530:CDS 55.0%
GCTGCTGATGAAGGAGAAGG+AGG - chr3_1:11069119-11069138 Msa0348530:CDS 55.0%
! GTGGTTGGTATGGGAGGACT+TGG - chr3_1:11069563-11069582 Msa0348530:CDS 55.0%
! TCCTGCAGACCCTTTGGTGT+AGG + chr3_1:11069737-11069756 None:intergenic 55.0%
ACCAAAGGGTCTGCAGGAGA+TGG - chr3_1:11069739-11069758 Msa0348530:intron 55.0%
TCCATCTCCTGCAGACCCTT+TGG + chr3_1:11069743-11069762 None:intergenic 55.0%
AAGGGTCTGCAGGAGATGGA+TGG - chr3_1:11069743-11069762 Msa0348530:intron 55.0%
GCCTACACCAAAGGGTCTGC+AGG - chr3_1:11069733-11069752 Msa0348530:intron 60.0%
GCCTACACCAAAGGGTCTGC+AGG - chr3_1:11069733-11069752 Msa0348530:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 11068966 11070899 11068966 ID=Msa0348530;Name=Msa0348530
chr3_1 mRNA 11068966 11070899 11068966 ID=Msa0348530-mRNA-1;Parent=Msa0348530;Name=Msa0348530-mRNA-1;_AED=0.37;_eAED=0.39;_QI=0|0|0|1|0|0|9|0|553
chr3_1 exon 11070660 11070899 11070660 ID=Msa0348530-mRNA-1:exon:2945;Parent=Msa0348530-mRNA-1
chr3_1 exon 11070348 11070587 11070348 ID=Msa0348530-mRNA-1:exon:2944;Parent=Msa0348530-mRNA-1
chr3_1 exon 11070081 11070329 11070081 ID=Msa0348530-mRNA-1:exon:2943;Parent=Msa0348530-mRNA-1
chr3_1 exon 11070048 11070054 11070048 ID=Msa0348530-mRNA-1:exon:2942;Parent=Msa0348530-mRNA-1
chr3_1 exon 11069751 11069974 11069751 ID=Msa0348530-mRNA-1:exon:2941;Parent=Msa0348530-mRNA-1
chr3_1 exon 11069449 11069693 11069449 ID=Msa0348530-mRNA-1:exon:2940;Parent=Msa0348530-mRNA-1
chr3_1 exon 11069231 11069436 11069231 ID=Msa0348530-mRNA-1:exon:2939;Parent=Msa0348530-mRNA-1
chr3_1 exon 11069018 11069221 11069018 ID=Msa0348530-mRNA-1:exon:2938;Parent=Msa0348530-mRNA-1
chr3_1 exon 11068966 11069012 11068966 ID=Msa0348530-mRNA-1:exon:2937;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11070660 11070899 11070660 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11070348 11070587 11070348 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11070081 11070329 11070081 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11070048 11070054 11070048 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11069751 11069974 11069751 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11069449 11069693 11069449 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11069231 11069436 11069231 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11069018 11069221 11069018 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
chr3_1 CDS 11068966 11069012 11068966 ID=Msa0348530-mRNA-1:cds;Parent=Msa0348530-mRNA-1
Gene Sequence

>Msa0348530

ATGGCAGAAACAACAGTATCATTTGTTTTAGAGAAACTCTACAGTCTTGCAGAAAAAGAAGCAACTCTATTGATAGGTGTACATGGAGACTTTAAAGAGATCAAAGATGAACTTGAGAGCATCAAAGCATTTCTCAAGGATGCAGATACAAGGGCTGCTGATGAAGGAGAAGGAGGATCTTCTGAAGGAGTTAAAACTTGGGTTAAGCAGCTGAGAGAAGCATCTTTTCACATAGAAGATGTAGCTCAAGTTATCAAAACCATGAAACAAAGACATAAGATTGCTTCTGATATGAAAAACATCAAGTCTTCGGTTGTTGAAATCAAAGAAAGAAGTGTGAGGTATAAGTTTATAGTTGAAAATGGACCAGGAAGCTCTAGAGAGACTACTGGAAATGAAAGTTTTGGTGATCTTCGAATGGCTTCGCATTTCATTGAAGAGAACCAAGTTGTGGGATTTGAGTCGCCAAGAGATGAATTGGGAACCAATGAGCTCATGTTGGTTTCTGTGGTTGGTATGGGAGGACTTGGAAAAACAACTCTTTCTAAGCATGTTTTTGATAACAAGCTTGTGAAAAAGCACTTCGATTGTCGATGTTTTATCACAGTTTCTCAATCTTATAATATGAAAGAGTTGTTGATTGATATGGTAAAGAAGTTTTGCAAGGACAGCAATGAGCCTACACCAAAGGGTCTGCAGGAGATGGATGGCATTACATTGATTGCTCAAGTACTTGGTAGTAGAATCATTGTCACCACTAGAACAATTGAAGTAGCTGAATATTTTAGGAAATCTTTTCATGTTCATATTCACAAGCTACAGACTTTGTCTTCAGAGAAAGCTTGGGAACTGTTCTGTAAAAAGGCATTTAGATCTGAGCCTGAAAATCTGTGTCCGAAAGATCTTGAGAAACTGTCCGAGGAAATTGTTCAAAAATGTCGAGGACTACCACTGGCAATTGTGAGAAAATATCTGAGATCGGAGTTAGAGAACAATACACATCTGACTGGTCTAATGAGGATATTATCTCTTAGTTATGATGATTTGCCTTACCATTTGAAAGCATGCATGCTATATTTTGGTATATATCCTGAGGACTACATCATCAAACGCAAAAGACTTACTCGACAATGGATGGCTGAAGGATTTGTTAAGAATGAGCACACAAGACCATTGGAGGAAGTTGCAGAAGAGTACATGACAAAAAGTTTGGTTCAAGTTTCCAAAGATGGTTTTGATGGCAAAGTGAAAAGTTGTCAAGTACATGATTTGATGCGCGAAGTGATCATCAGAAAAGTGAAAGATTCAAGCTTTTGCCATTTGATGCATGAAGGTCATGAACAAACCATAGATGGAACAGTTAGGCGCTTCTCTATAGCAGCTAACGCAAACAATGTGTTGACCAGTACTGGAATTCGCGCTGTATTTGTTTTCGACAAAGCAGAACTGGATGAACATTTCATGGATGGAATAATTTCCAAGTTCAAGCTTTTAAAAGTACTTGATTTTGAGAAATCTCAGTTGAATTATGTTCCTGATAACTTAGGGAACCTTTTCCACCTAACGTACCTGAACCTGAGTCATACGAAAGTTAAGGTTATTCCTAGATCCATTGCTACTGAACTTAGAAACCTTGGATTTAAGGCAAACTCAAGTGCGTGA

Protein sequence

>Msa0348530

MAETTVSFVLEKLYSLAEKEATLLIGVHGDFKEIKDELESIKAFLKDADTRAADEGEGGSSEGVKTWVKQLREASFHIEDVAQVIKTMKQRHKIASDMKNIKSSVVEIKERSVRYKFIVENGPGSSRETTGNESFGDLRMASHFIEENQVVGFESPRDELGTNELMLVSVVGMGGLGKTTLSKHVFDNKLVKKHFDCRCFITVSQSYNMKELLIDMVKKFCKDSNEPTPKGLQEMDGITLIAQVLGSRIIVTTRTIEVAEYFRKSFHVHIHKLQTLSSEKAWELFCKKAFRSEPENLCPKDLEKLSEEIVQKCRGLPLAIVRKYLRSELENNTHLTGLMRILSLSYDDLPYHLKACMLYFGIYPEDYIIKRKRLTRQWMAEGFVKNEHTRPLEEVAEEYMTKSLVQVSKDGFDGKVKSCQVHDLMREVIIRKVKDSSFCHLMHEGHEQTIDGTVRRFSIAANANNVLTSTGIRAVFVFDKAELDEHFMDGIISKFKLLKVLDFEKSQLNYVPDNLGNLFHLTYLNLSHTKVKVIPRSIATELRNLGFKANSSA*