AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1372240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372240 MtrunA17_Chr1g0208311 95.312 768 29 2 1 762 1 767 0.0 1337
Msa1372240 MtrunA17_Chr4g0071211 24.111 253 185 5 502 753 202 448 5.82e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372240 AT1G56290.1 51.847 785 259 19 1 759 1 692 0.0 733
Msa1372240 AT5G56900.3 27.237 257 168 8 502 753 258 500 4.71e-15 79.3
Msa1372240 AT5G56900.1 27.237 257 168 8 502 753 159 401 7.84e-15 77.8
Msa1372240 AT5G56900.2 27.237 257 168 8 502 753 351 593 9.71e-15 78.6

Find 220 sgRNAs with CRISPR-Local

Find 659 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATACCACTTCTTCTTTC+TGG 0.127155 tig0019271:-169948 None:intergenic
CATTGGTAATATGCTGATTT+TGG 0.157883 tig0019271:-177776 None:intergenic
AATGCAGAACAAGCAGTTTA+AGG 0.165236 tig0019271:+174756 Msa1372240:CDS
TAAATCTAGAAAATGCTTTC+TGG 0.175819 tig0019271:+169666 Msa1372240:exon
GATAATGAATCTTGCACTTT+AGG 0.203429 tig0019271:-173794 None:intergenic
AGATGGCAGTGATGGTTCTT+TGG 0.217013 tig0019271:+170117 Msa1372240:CDS
AAAAGAGGCAACGTTCTTTC+TGG 0.231869 tig0019271:-174903 None:intergenic
CTTTAGGTGCTTTCATTTCA+TGG 0.232601 tig0019271:-173778 None:intergenic
CTATCCAACGGGATTCTAAA+AGG 0.246272 tig0019271:+173580 Msa1372240:CDS
TTCTATCGTCCTCCCTTGTT+GGG 0.271017 tig0019271:+172989 Msa1372240:CDS
AGCCTCTTTAGCAACATCTT+TGG 0.273963 tig0019271:-175699 None:intergenic
TTAACTCCATCCCTTTCTTC+TGG 0.275995 tig0019271:-172949 None:intergenic
CCAAATTCTACATGAAAATA+AGG 0.288504 tig0019271:-177370 None:intergenic
GTCAAAATGATCCCAGTCTT+TGG 0.291825 tig0019271:-177557 None:intergenic
GCCTCTTTAGCAACATCTTT+GGG 0.302529 tig0019271:-175698 None:intergenic
ATCAGATATTAGGAGGAAAA+AGG 0.309597 tig0019271:+169868 Msa1372240:CDS
ACAAGATGCATCGGCCGATT+TGG 0.310653 tig0019271:-174937 None:intergenic
CGGCGCTACTGCCGGAGAAT+AGG 0.311731 tig0019271:-169117 None:intergenic
TAACTCCGATGGCTCTGTTT+TGG 0.313770 tig0019271:+173946 Msa1372240:CDS
CTTCTATCGTCCTCCCTTGT+TGG 0.323231 tig0019271:+172988 Msa1372240:CDS
TGAAATAGTTGCTATGTAAT+AGG 0.326984 tig0019271:+177797 Msa1372240:three_prime_UTR
TGGTACTTCGTGGTCGTATG+AGG 0.340347 tig0019271:-169275 None:intergenic
CGATATTGCAAGAAAAGAAA+TGG 0.349250 tig0019271:+170213 Msa1372240:CDS
ACTCGTATCAATGAGTCTTT+TGG 0.351937 tig0019271:-177311 None:intergenic
CTGACCTTCTTAAAGTATAA+AGG 0.363032 tig0019271:-175722 None:intergenic
CAGCCTGGTAGGAGGGGAAG+AGG 0.363455 tig0019271:-169083 None:intergenic
AAATCTAGAAAATGCTTTCT+GGG 0.367835 tig0019271:+169667 Msa1372240:exon
TTAAATAAATTTGCTAATGA+TGG 0.373787 tig0019271:+173887 Msa1372240:CDS
GATGGCAGTGATGGTTCTTT+GGG 0.376486 tig0019271:+170118 Msa1372240:CDS
ATTTGTTGGAGGCTGCAAAT+TGG 0.377228 tig0019271:-169295 None:intergenic
TTACATAGCAACTATTTCAT+TGG 0.378411 tig0019271:-177793 None:intergenic
AAGGAGTTTAAGAGTAGTCT+TGG 0.378970 tig0019271:+177430 Msa1372240:CDS
TAACTCCATCCCTTTCTTCT+GGG 0.389734 tig0019271:-172948 None:intergenic
GGCGCTACTGCCGGAGAATA+GGG 0.390340 tig0019271:-169116 None:intergenic
CTTCCATCATCCTTTAGATA+AGG 0.393080 tig0019271:-172919 None:intergenic
CATTAGAGGCATGCTGCATT+TGG 0.401828 tig0019271:+177462 Msa1372240:CDS
AGAAATTAAACTCACGTGAA+TGG 0.401995 tig0019271:-175037 None:intergenic
CTTGGGTTGAATGTCATTAG+AGG 0.406348 tig0019271:+177448 Msa1372240:CDS
TAGTGGTAGTTTCAATTTGT+TGG 0.408991 tig0019271:-169309 None:intergenic
ACGGAGAGAAAACTAATAGA+AGG 0.409896 tig0019271:-169196 None:intergenic
CAGTGGCAGCCCGTGGTGCC+TGG 0.410325 tig0019271:+174997 Msa1372240:CDS
CACCCTCAGCTACAGCAAAC+TGG 0.415469 tig0019271:-173835 None:intergenic
GATATTGCCAGAGGAGGTTC+CGG 0.417230 tig0019271:+170294 Msa1372240:CDS
AAAGAGGCAACGTTCTTTCT+GGG 0.420692 tig0019271:-174902 None:intergenic
AAGTGCAAGATTCATTATCT+TGG 0.421374 tig0019271:+173798 Msa1372240:CDS
CAAAAGTCATGTTCAAAAGA+TGG 0.422563 tig0019271:+170157 Msa1372240:CDS
GGAGAAAGGTGGGGTTCTCT+TGG 0.424757 tig0019271:+173441 Msa1372240:CDS
TCCTTTGTTTCTGAAACAGC+TGG 0.426347 tig0019271:-170271 None:intergenic
GCCAGAGGAGGTTCCGGTTG+AGG 0.427345 tig0019271:+170300 Msa1372240:CDS
CCGGGCTTTATGAGAATCAT+AGG 0.428496 tig0019271:+177748 Msa1372240:three_prime_UTR
CTAAGACATACCTCCTCAAC+CGG 0.430215 tig0019271:-170313 None:intergenic
GCATGGCCTTAGCTGCCAAC+TGG 0.432433 tig0019271:-174054 None:intergenic
TCCTCAACCGGAACCTCCTC+TGG 0.432540 tig0019271:-170301 None:intergenic
TAAAGCAGCTGCACCAGCTC+GGG 0.436695 tig0019271:+173488 Msa1372240:CDS
TGGATAGGCTTATCAGAATC+TGG 0.438375 tig0019271:-173564 None:intergenic
AACTAGCATCTCTTGGCAAT+TGG 0.448076 tig0019271:-177688 None:intergenic
TCTTCTTCAGATGGCAGTGA+TGG 0.448835 tig0019271:+170109 Msa1372240:CDS
GAAATTAAACTCACGTGAAT+GGG 0.449576 tig0019271:-175036 None:intergenic
GGCTCCTTTATACTTTAAGA+AGG 0.451038 tig0019271:+175718 Msa1372240:CDS
TCGTCCTCCCTTGTTGGGGA+TGG 0.451524 tig0019271:+172994 Msa1372240:CDS
TTAGCAACATCTTTGGGTAC+AGG 0.452375 tig0019271:-175692 None:intergenic
ATGAAAATAAGGAAAGTCCT+TGG 0.453332 tig0019271:-177359 None:intergenic
AGAAGGGTGTAGAATGGTAG+TGG 0.454953 tig0019271:-169179 None:intergenic
TGCAAACCAGTTGGCAGCTA+AGG 0.457599 tig0019271:+174048 Msa1372240:CDS
AGATAAGGATTCAATTCCTT+AGG 0.459784 tig0019271:-172904 None:intergenic
TTCTGATAAGCCTATCCAAC+GGG 0.465145 tig0019271:+173569 Msa1372240:CDS
ACCCAAAGATGTTGCTAAAG+AGG 0.465690 tig0019271:+175697 Msa1372240:CDS
TGCAAGAAAAGAAATGGGAT+TGG 0.466865 tig0019271:+170219 Msa1372240:CDS
AACTCTACAAACCTGGTCAC+GGG 0.470379 tig0019271:-169703 None:intergenic
TGGTAGTTTCAATTTGTTGG+AGG 0.472309 tig0019271:-169306 None:intergenic
AGGGAAGTTCTAGTTCTAGA+AGG 0.477096 tig0019271:+174361 Msa1372240:CDS
TGAAGAAGCTGATAGACTAA+TGG 0.482397 tig0019271:+174099 Msa1372240:CDS
TTCCCTCTTCCCCTCCTACC+AGG 0.484449 tig0019271:+169080 Msa1372240:five_prime_UTR
TGATTGATTGATTACCTTAG+TGG 0.484499 tig0019271:-169326 None:intergenic
GAAAAGAAATGGGATTGGAT+TGG 0.486728 tig0019271:+170224 Msa1372240:CDS
CTAGGTACAAGATGGGAACT+TGG 0.486887 tig0019271:+169814 Msa1372240:intron
TGAAAATAAGGAAAGTCCTT+GGG 0.489950 tig0019271:-177358 None:intergenic
GGTTGTGGCGGCGCTACTGC+CGG 0.490345 tig0019271:-169125 None:intergenic
TCACCAGGTATGTCTACATC+TGG 0.490912 tig0019271:-173995 None:intergenic
TTTGTCTAGAAAATCCAAAT+CGG 0.491417 tig0019271:+174923 Msa1372240:CDS
GGCTGCAAATTGGTACTTCG+TGG 0.491562 tig0019271:-169285 None:intergenic
AATCCTTATCTAAAGGATGA+TGG 0.493135 tig0019271:+172916 Msa1372240:CDS
ACAGGTTGTGGGAGAAAGGT+GGG 0.494592 tig0019271:+173431 Msa1372240:intron
AAAGAAGGAAGGAGAGGTTG+TGG 0.498892 tig0019271:-169140 None:intergenic
AGGAGTTTAAGAGTAGTCTT+GGG 0.500080 tig0019271:+177431 Msa1372240:CDS
CAATATAACTCGTTTATGCC+CGG 0.500626 tig0019271:+177729 Msa1372240:three_prime_UTR
ACGGTCAAGGAGTGGTAAAA+AGG 0.500765 tig0019271:+170063 Msa1372240:CDS
GATATTGCAAGAAAAGAAAT+GGG 0.506087 tig0019271:+170214 Msa1372240:CDS
AAAAGTCATGTTCAAAAGAT+GGG 0.506136 tig0019271:+170158 Msa1372240:CDS
GGAATTGAATCCTTATCTAA+AGG 0.506348 tig0019271:+172909 Msa1372240:CDS
GAAATTCATTCCCCGTGACC+AGG 0.508309 tig0019271:+169692 Msa1372240:CDS
TCTTGAAACTGTGATGGGAT+TGG 0.510705 tig0019271:+175634 Msa1372240:CDS
ACGTACAGGTTGTGGGAGAA+AGG 0.512724 tig0019271:+173427 Msa1372240:intron
TCCTTTCAAACGAAGTTGCA+TGG 0.513085 tig0019271:-174071 None:intergenic
GTGTAGAATGGTAGTGGAGT+GGG 0.514840 tig0019271:-169173 None:intergenic
TACAAGATGGGAACTTGGAT+AGG 0.515554 tig0019271:+169819 Msa1372240:CDS
TGCCGGAGAATAGGGACGGT+GGG 0.515824 tig0019271:-169108 None:intergenic
GGTACTTCGTGGTCGTATGA+GGG 0.516203 tig0019271:-169274 None:intergenic
GCCATGCAACTTCGTTTGAA+AGG 0.516217 tig0019271:+174070 Msa1372240:CDS
TCCTCCCTTGTTGGGGATGG+AGG 0.516820 tig0019271:+172997 Msa1372240:CDS
CTAAAGCAGCTGCACCAGCT+CGG 0.518101 tig0019271:+173487 Msa1372240:CDS
GAAGTGGTTACCCAGAAGAA+AGG 0.519164 tig0019271:+172938 Msa1372240:CDS
GCCTTCGTTTCTTATCATCC+CGG 0.519609 tig0019271:-170015 None:intergenic
CCATGTTATTGATGATGAAA+AGG 0.522343 tig0019271:+177411 Msa1372240:CDS
TGTATATACTAGGTACAAGA+TGG 0.525351 tig0019271:+169806 Msa1372240:intron
GTGGAGAAACTAGCATCTCT+TGG 0.526001 tig0019271:-177695 None:intergenic
GCCAGCTGTTTCAGAAACAA+AGG 0.526710 tig0019271:+170270 Msa1372240:CDS
ATATCTTCTGAGCAGAAGAA+AGG 0.527325 tig0019271:+174697 Msa1372240:CDS
CCTATGATTCTCATAAAGCC+CGG 0.528167 tig0019271:-177748 None:intergenic
GCAGTTTAAGGTTTATACTC+AGG 0.528525 tig0019271:+174768 Msa1372240:CDS
ACGTCAAAGGTACGAGAAAG+TGG 0.530885 tig0019271:+177504 Msa1372240:CDS
TATCCAACGGGATTCTAAAA+GGG 0.536857 tig0019271:+173581 Msa1372240:CDS
CAACTGAAAGTGAAAGCGAC+CGG 0.538228 tig0019271:+169996 Msa1372240:CDS
GTCAAAGAAGGCAAATCCTA+AGG 0.538930 tig0019271:+172888 Msa1372240:intron
GTAGAATTTGGTCTAAACAA+AGG 0.541254 tig0019271:+177382 Msa1372240:CDS
GAAGACTCTTCTTCTTCAGA+TGG 0.541678 tig0019271:+170100 Msa1372240:CDS
GCAGCAACGGAGGCATTGCA+TGG 0.542294 tig0019271:+175658 Msa1372240:CDS
CAGCAATGACCAGGCACCAC+GGG 0.542710 tig0019271:-175006 None:intergenic
CCGGAGAATAGGGACGGTGG+GGG 0.543170 tig0019271:-169106 None:intergenic
TGATGGGATTGGCGCAGCAA+CGG 0.543497 tig0019271:+175645 Msa1372240:CDS
ACAAATTGAAACTACCACTA+AGG 0.544779 tig0019271:+169312 Msa1372240:five_prime_UTR
ACTAATAGAAGGGTGTAGAA+TGG 0.546084 tig0019271:-169185 None:intergenic
TATGGATACGTACAGGTTGT+GGG 0.551919 tig0019271:+173420 Msa1372240:intron
CTCATTGATACGAGTCAGAA+GGG 0.552831 tig0019271:+177319 Msa1372240:CDS
AATATAACTCGTTTATGCCC+GGG 0.554488 tig0019271:+177730 Msa1372240:three_prime_UTR
AGGCATGCTGCATTTGGCTG+AGG 0.559862 tig0019271:+177468 Msa1372240:CDS
TAACTCTACAAACCTGGTCA+CGG 0.560136 tig0019271:-169704 None:intergenic
AAGTGGTTACCCAGAAGAAA+GGG 0.560758 tig0019271:+172939 Msa1372240:CDS
AGCCTGGTAGGAGGGGAAGA+GGG 0.561409 tig0019271:-169082 None:intergenic
TATCTAAAGGATGATGGAAG+TGG 0.562789 tig0019271:+172922 Msa1372240:CDS
TCTATCGTCCTCCCTTGTTG+GGG 0.563715 tig0019271:+172990 Msa1372240:CDS
GAAATTAGATCAAGAACTGA+GGG 0.565433 tig0019271:+174342 Msa1372240:CDS
GTGGGCTGCGAAAGGAAAGA+AGG 0.566263 tig0019271:-169155 None:intergenic
TGATAAGAAACGAAGGCGGA+AGG 0.566477 tig0019271:+170021 Msa1372240:CDS
TATGCGTGAGTTAGTTAGCA+AGG 0.567223 tig0019271:+173916 Msa1372240:CDS
GTATGAGGGCGGAGGCGCAA+TGG 0.569010 tig0019271:-169260 None:intergenic
GATGAATATGACTTTGAGAC+TGG 0.570613 tig0019271:+174796 Msa1372240:CDS
ATGGTTCTTTGGGTCGCCAA+CGG 0.574425 tig0019271:+170128 Msa1372240:CDS
AAGATATGTGAAATTTGCAA+TGG 0.574800 tig0019271:-174965 None:intergenic
CTCTCCGTCTCGAAAACGCA+AGG 0.577826 tig0019271:+169211 Msa1372240:five_prime_UTR
TCGTGGTCGTATGAGGGCGG+AGG 0.578997 tig0019271:-169268 None:intergenic
ACAAGATGGGAACTTGGATA+GGG 0.579294 tig0019271:+169820 Msa1372240:CDS
TTCATTTCATGGTGCCGAGG+AGG 0.579484 tig0019271:-173767 None:intergenic
TTGCTCCTCCATCCCCAACA+AGG 0.579676 tig0019271:-173002 None:intergenic
GCATGTAGATGAGCCCGAGC+TGG 0.580752 tig0019271:-173501 None:intergenic
TACAGGTTGTGGGAGAAAGG+TGG 0.581114 tig0019271:+173430 Msa1372240:intron
AGTGTTTCTTGAAACTGTGA+TGG 0.581708 tig0019271:+175628 Msa1372240:CDS
AACTGAAAGTGAAAGCGACC+GGG 0.581958 tig0019271:+169997 Msa1372240:CDS
CTATAAGAAGCAGACAAAGA+GGG 0.582737 tig0019271:+173523 Msa1372240:CDS
AAGCCAGTTTGCTGTAGCTG+AGG 0.582994 tig0019271:+173832 Msa1372240:CDS
TTGGGGATGGAGGAGCAAGT+TGG 0.583549 tig0019271:+173007 Msa1372240:CDS
AGAAAAGAGATGGACGGTCA+AGG 0.584062 tig0019271:+170050 Msa1372240:CDS
TGCGTAAGTCTGAAAGTAAG+AGG 0.585368 tig0019271:+170248 Msa1372240:CDS
TGGGATTGGCGCAGCAACGG+AGG 0.587679 tig0019271:+175648 Msa1372240:CDS
TTGGTGGGCAGGAAGAAGCA+AGG 0.587839 tig0019271:+174286 Msa1372240:intron
GCCGGAGAATAGGGACGGTG+GGG 0.591368 tig0019271:-169107 None:intergenic
TTATATTGTTACATTACATG+TGG 0.592631 tig0019271:-177714 None:intergenic
TTGATGAAGCAGAAGATGAG+TGG 0.593008 tig0019271:+177275 Msa1372240:CDS
ACTCATTGATACGAGTCAGA+AGG 0.593762 tig0019271:+177318 Msa1372240:CDS
GGTGTAGAATGGTAGTGGAG+TGG 0.594123 tig0019271:-169174 None:intergenic
CTATGATTCTCATAAAGCCC+GGG 0.596074 tig0019271:-177747 None:intergenic
ACTTTCCAAAACAGAGCCAT+CGG 0.600722 tig0019271:-173951 None:intergenic
TGGTGGGCAGGAAGAAGCAA+GGG 0.600781 tig0019271:+174287 Msa1372240:intron
GCTATAAGAAGCAGACAAAG+AGG 0.602039 tig0019271:+173522 Msa1372240:CDS
AGCCAGTTTGCTGTAGCTGA+GGG 0.602459 tig0019271:+173833 Msa1372240:CDS
AGCGGAGAGAACAAGATCAA+AGG 0.603131 tig0019271:+170181 Msa1372240:CDS
AACGGTGGATGATAATGTGT+GGG 0.603348 tig0019271:+175544 Msa1372240:CDS
AAGGGTCCAGAAAGAAGAAG+TGG 0.604306 tig0019271:+169942 Msa1372240:CDS
GATAAGAAACGAAGGCGGAA+GGG 0.605462 tig0019271:+170022 Msa1372240:CDS
TGCTCCTCCATCCCCAACAA+GGG 0.605665 tig0019271:-173001 None:intergenic
GTAGTGGAGTGGGCTGCGAA+AGG 0.608639 tig0019271:-169163 None:intergenic
CAAGAGCAAGCAGCTCGAGA+AGG 0.610525 tig0019271:+173054 Msa1372240:CDS
TGAAATTAGATCAAGAACTG+AGG 0.611462 tig0019271:+174341 Msa1372240:CDS
CGGAGAGAAAACTAATAGAA+GGG 0.611734 tig0019271:-169195 None:intergenic
TCATGTTCAAAAGATGGGAG+CGG 0.612238 tig0019271:+170163 Msa1372240:CDS
ATGGACACAACAAGATGCAT+CGG 0.612414 tig0019271:-174946 None:intergenic
TAACATGAGTGCAAACCAGT+TGG 0.614285 tig0019271:+174039 Msa1372240:CDS
TCTCCAGATGTAGACATACC+TGG 0.614683 tig0019271:+173992 Msa1372240:CDS
CTGCCGGAGAATAGGGACGG+TGG 0.618206 tig0019271:-169109 None:intergenic
AATCTAGAAAATGCTTTCTG+GGG 0.620178 tig0019271:+169668 Msa1372240:exon
ATTCAAGGTATGCTATGCAG+AGG 0.622462 tig0019271:+174674 Msa1372240:intron
AGAGGAGGTTCCGGTTGAGG+AGG 0.624945 tig0019271:+170303 Msa1372240:CDS
GCTTTCATTTCATGGTGCCG+AGG 0.628763 tig0019271:-173770 None:intergenic
CATATCTTATGTTGCCACAG+TGG 0.629694 tig0019271:+174980 Msa1372240:CDS
GGCACCACGGGCTGCCACTG+TGG 0.630244 tig0019271:-174994 None:intergenic
GTATATACTAGGTACAAGAT+GGG 0.630548 tig0019271:+169807 Msa1372240:intron
GTGTTTCTTGAAACTGTGAT+GGG 0.635016 tig0019271:+175629 Msa1372240:CDS
GTTTAAGGTTTATACTCAGG+CGG 0.637491 tig0019271:+174771 Msa1372240:CDS
TTTACGCAACTCAATTCCCA+AGG 0.639849 tig0019271:+177342 Msa1372240:CDS
TATAAGAAGCAGACAAAGAG+GGG 0.639918 tig0019271:+173524 Msa1372240:CDS
GTTGCCACAGTGGCAGCCCG+TGG 0.646274 tig0019271:+174990 Msa1372240:CDS
TCCTCCATCCCCAACAAGGG+AGG 0.647544 tig0019271:-172998 None:intergenic
ACTCTACAAACCTGGTCACG+GGG 0.649268 tig0019271:-169702 None:intergenic
GGTTACCCAGAAGAAAGGGA+TGG 0.651690 tig0019271:+172943 Msa1372240:CDS
GCATGAATCAGCTACAAGAA+CGG 0.655856 tig0019271:+175526 Msa1372240:intron
GAAAGGGATGGAGTTAACGT+TGG 0.656584 tig0019271:+172955 Msa1372240:CDS
AAAGGAGATATTGCCAGAGG+AGG 0.656762 tig0019271:+170288 Msa1372240:CDS
AGAGATGGACGGTCAAGGAG+TGG 0.659421 tig0019271:+170055 Msa1372240:CDS
AAGGAGAGTAGTAACTCCGA+TGG 0.660069 tig0019271:+173935 Msa1372240:CDS
GGTAAAATACAGCAATGACC+AGG 0.660836 tig0019271:-175015 None:intergenic
ATTCTGATAAGCCTATCCAA+CGG 0.661452 tig0019271:+173568 Msa1372240:CDS
GAAAGGAAAGAAGGAAGGAG+AGG 0.661803 tig0019271:-169146 None:intergenic
CTACTGCCGGAGAATAGGGA+CGG 0.665267 tig0019271:-169112 None:intergenic
TTCTGAGCAGAAGAAAGGAG+AGG 0.665761 tig0019271:+174702 Msa1372240:CDS
CAGGTTGTGGGAGAAAGGTG+GGG 0.667439 tig0019271:+173432 Msa1372240:intron
GCTGCGAAAGGAAAGAAGGA+AGG 0.667850 tig0019271:-169151 None:intergenic
AAGACATGTATAGACGTCAA+AGG 0.668527 tig0019271:+177491 Msa1372240:CDS
GAAGGAAGGAGAGGTTGTGG+CGG 0.671872 tig0019271:-169137 None:intergenic
TGGCAGTTCACGCAACAGAG+TGG 0.672423 tig0019271:-169240 None:intergenic
ACAGCAATGACCAGGCACCA+CGG 0.673584 tig0019271:-175007 None:intergenic
ACTTCGTGGTCGTATGAGGG+CGG 0.680013 tig0019271:-169271 None:intergenic
AACAAAGGAGATATTGCCAG+AGG 0.685554 tig0019271:+170285 Msa1372240:CDS
TGAATCAGCTACAAGAACGG+TGG 0.687115 tig0019271:+175529 Msa1372240:CDS
ACCGGGATGATAAGAAACGA+AGG 0.693258 tig0019271:+170014 Msa1372240:CDS
AGAAGGACGAAGCTGCCAAG+AGG 0.694798 tig0019271:+173071 Msa1372240:CDS
AAGAGTAGAAAGAAGCAAGG+AGG 0.698813 tig0019271:+174829 Msa1372240:CDS
GAACGGTGGATGATAATGTG+TGG 0.714664 tig0019271:+175543 Msa1372240:CDS
ACGGTGGATGATAATGTGTG+GGG 0.723750 tig0019271:+175545 Msa1372240:CDS
TCAAAGGTACGAGAAAGTGG+AGG 0.744298 tig0019271:+177507 Msa1372240:CDS
GGGATGATAAGAAACGAAGG+CGG 0.769963 tig0019271:+170017 Msa1372240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAAAAAATTGAACA+TGG - tig0019271:169559-169578 None:intergenic 10.0%
!!! AATTTTAAAGATAGATAAAA+AGG + tig0019271:170483-170502 Msa1372240:intron 10.0%
!!! ATTTTAAAGATAGATAAAAA+GGG + tig0019271:170484-170503 Msa1372240:intron 10.0%
!!! TATTTTCAAAAAAAACAATA+CGG - tig0019271:172396-172415 None:intergenic 10.0%
!!! AATCAAAATACTATTTCTTA+GGG + tig0019271:169348-169367 Msa1372240:intron 15.0%
!! AACACGAATAAATTAATTAA+TGG - tig0019271:169621-169640 None:intergenic 15.0%
!! AAAGAAAAAAATCAGATATT+AGG + tig0019271:169858-169877 Msa1372240:CDS 15.0%
!!! TCTATTTGATAACAAAATAA+GGG - tig0019271:171368-171387 None:intergenic 15.0%
!! TGTCTTATATTATTTATGTT+TGG + tig0019271:172599-172618 Msa1372240:intron 15.0%
!!! CAGAATAATAACATTTTTAT+AGG - tig0019271:173142-173161 None:intergenic 15.0%
!! AAAAATGTTATTATTCTGTT+AGG + tig0019271:173144-173163 Msa1372240:intron 15.0%
!!! TTAAATAAATTTGCTAATGA+TGG + tig0019271:173887-173906 Msa1372240:CDS 15.0%
!! ATATAATTGATTAAGTTCTT+TGG + tig0019271:175140-175159 Msa1372240:intron 15.0%
!! TAATTTAACCAATTTCAATA+AGG - tig0019271:175223-175242 None:intergenic 15.0%
!!! TAAGACATTTTTTGAAATTT+CGG - tig0019271:175577-175596 None:intergenic 15.0%
!! ATATATTATTATGAGAAATG+CGG + tig0019271:175979-175998 Msa1372240:intron 15.0%
!!! CAATCAAAATACTATTTCTT+AGG + tig0019271:169347-169366 Msa1372240:intron 20.0%
!! AATGAAGTGATAATACAATT+AGG - tig0019271:169584-169603 None:intergenic 20.0%
!!! ATCTGATTTTTTTCTTTCTT+TGG - tig0019271:169855-169874 None:intergenic 20.0%
!! AGCTTGATAAGATAAAAAAA+GGG + tig0019271:169924-169943 Msa1372240:CDS 20.0%
!!! ACTGTATTTAAGTTAGATTT+AGG + tig0019271:170639-170658 Msa1372240:intron 20.0%
!!! CTGTATTTAAGTTAGATTTA+GGG + tig0019271:170640-170659 Msa1372240:intron 20.0%
!!! AAGAAATTTTATCTTAGGAA+TGG - tig0019271:170765-170784 None:intergenic 20.0%
!!! AAAGGAAGAAATTTTATCTT+AGG - tig0019271:170770-170789 None:intergenic 20.0%
!!! AATTTTCCTTTAATATTGAG+TGG - tig0019271:170947-170966 None:intergenic 20.0%
!! TATTGGATTATTCTATCATA+TGG - tig0019271:171238-171257 None:intergenic 20.0%
!!! GTCTATTTGATAACAAAATA+AGG - tig0019271:171369-171388 None:intergenic 20.0%
!! AGAGAAACTTAATAAAATAG+TGG - tig0019271:171495-171514 None:intergenic 20.0%
!!! ATTTGACTATTTTTCAAATC+TGG + tig0019271:171749-171768 Msa1372240:intron 20.0%
!!! TATTTTTCAAATCTGGAATT+TGG + tig0019271:171756-171775 Msa1372240:intron 20.0%
!! AGTTTAACAGTGTTAAATTA+AGG + tig0019271:171948-171967 Msa1372240:intron 20.0%
!! GTTTAACAGTGTTAAATTAA+GGG + tig0019271:171949-171968 Msa1372240:intron 20.0%
!! TTTAACAGTGTTAAATTAAG+GGG + tig0019271:171950-171969 Msa1372240:intron 20.0%
!!! TGTTATTTAAGTAAAACTCA+AGG + tig0019271:172009-172028 Msa1372240:intron 20.0%
!! GTTATTTAAGTAAAACTCAA+GGG + tig0019271:172010-172029 Msa1372240:intron 20.0%
!! CTAAATCTCTCTTAATTATT+TGG - tig0019271:172071-172090 None:intergenic 20.0%
!!! GAGAGATTTAGATATAATTT+TGG + tig0019271:172080-172099 Msa1372240:intron 20.0%
!!! GTTCTTTTAACATGTTATAT+TGG - tig0019271:172793-172812 None:intergenic 20.0%
!!! TTCTTTTGACATGTTATATT+GGG - tig0019271:172843-172862 None:intergenic 20.0%
!! TAGAATGAAATAATATCAAC+AGG - tig0019271:173319-173338 None:intergenic 20.0%
!! ATTGAACGTTAATTAAAGAA+CGG - tig0019271:173380-173399 None:intergenic 20.0%
!! ATACATGAAACAAATATGTA+GGG - tig0019271:174438-174457 None:intergenic 20.0%
!! AATACATGAAACAAATATGT+AGG - tig0019271:174439-174458 None:intergenic 20.0%
!! CATATTTGTTTCATGTATTT+CGG + tig0019271:174440-174459 Msa1372240:intron 20.0%
!!! ATCTTTTTTTGGATATTCTT+GGG - tig0019271:174862-174881 None:intergenic 20.0%
!! AAAAAAAGATGAATGCAAAT+CGG + tig0019271:174872-174891 Msa1372240:CDS 20.0%
!! ACTTAATCAATTATATTGCA+GGG - tig0019271:175136-175155 None:intergenic 20.0%
!! AACTTAATCAATTATATTGC+AGG - tig0019271:175137-175156 None:intergenic 20.0%
!! ATTTGATACCTTATTGAAAT+TGG + tig0019271:175212-175231 Msa1372240:intron 20.0%
!! TTGAAATTGGTTAAATTACA+TGG + tig0019271:175225-175244 Msa1372240:intron 20.0%
!! AGTAACCTTAAGATATATAA+TGG + tig0019271:175388-175407 Msa1372240:intron 20.0%
!! ATTCACCATTATATATCTTA+AGG - tig0019271:175396-175415 None:intergenic 20.0%
!!! ATGGTGAATTAAATTTTAAG+TGG + tig0019271:175407-175426 Msa1372240:intron 20.0%
!! TATATTATTATGAGAAATGC+GGG + tig0019271:175980-175999 Msa1372240:intron 20.0%
!!! ACACTATAATTACTAACTTT+TGG + tig0019271:176137-176156 Msa1372240:intron 20.0%
!!! CACTATAATTACTAACTTTT+GGG + tig0019271:176138-176157 Msa1372240:intron 20.0%
!!! ACTATAATTACTAACTTTTG+GGG + tig0019271:176139-176158 Msa1372240:intron 20.0%
!!! TAAATGCTTGATAATTTACA+TGG - tig0019271:176292-176311 None:intergenic 20.0%
!!! TGTATGGTTAAAACTTTTTA+AGG - tig0019271:176511-176530 None:intergenic 20.0%
!!! ACATCTAGTTTTTTTTTTTG+GGG - tig0019271:176696-176715 None:intergenic 20.0%
!!! GACATCTAGTTTTTTTTTTT+GGG - tig0019271:176697-176716 None:intergenic 20.0%
!!! TGACATCTAGTTTTTTTTTT+TGG - tig0019271:176698-176717 None:intergenic 20.0%
!! AAAAACTAGATGTCAAATAA+AGG + tig0019271:176703-176722 Msa1372240:intron 20.0%
!!! TTTCATCTTATTTTGTTTTG+CGG + tig0019271:176942-176961 Msa1372240:intron 20.0%
!! TTGAAACACAATTGAAATAA+TGG - tig0019271:177208-177227 None:intergenic 20.0%
!! GATTGAAGCAAATTTAAAAA+CGG - tig0019271:177247-177266 None:intergenic 20.0%
!! TTATATTGTTACATTACATG+TGG - tig0019271:177717-177736 None:intergenic 20.0%
!!! ATTTATTCGTGTTTTTTTGC+AGG + tig0019271:169628-169647 Msa1372240:intron 25.0%
! TAAATCTAGAAAATGCTTTC+TGG + tig0019271:169666-169685 Msa1372240:exon 25.0%
! AAATCTAGAAAATGCTTTCT+GGG + tig0019271:169667-169686 Msa1372240:exon 25.0%
! GAAAAAAATCAGATATTAGG+AGG + tig0019271:169861-169880 Msa1372240:CDS 25.0%
! CAGCTTGATAAGATAAAAAA+AGG + tig0019271:169923-169942 Msa1372240:CDS 25.0%
! TAAAAAGGAATATACATCTG+AGG + tig0019271:170078-170097 Msa1372240:CDS 25.0%
! AAAAGTCATGTTCAAAAGAT+GGG + tig0019271:170158-170177 Msa1372240:CDS 25.0%
!! CATTTCTTTTCTTGCAATAT+CGG - tig0019271:170215-170234 None:intergenic 25.0%
! GATATTGCAAGAAAAGAAAT+GGG + tig0019271:170214-170233 Msa1372240:CDS 25.0%
!!! AAATTCTAAGATTAATGCCA+TGG - tig0019271:170618-170637 None:intergenic 25.0%
!!! TCCTTTTTTTATTCCACAAA+GGG - tig0019271:170681-170700 None:intergenic 25.0%
!!! TTCCTTTTTTTATTCCACAA+AGG - tig0019271:170682-170701 None:intergenic 25.0%
! ATGTATCCCTATAACTTAAA+GGG - tig0019271:170833-170852 None:intergenic 25.0%
! CAAAACAACTGTAAGATAAA+AGG + tig0019271:170857-170876 Msa1372240:intron 25.0%
! TAAAAGGAGATATAAACCAT+AGG + tig0019271:170873-170892 Msa1372240:intron 25.0%
! AAGTATAGTTACTCATTTGT+AGG - tig0019271:171067-171086 None:intergenic 25.0%
! ATACTTATACAAGACAATGT+AGG + tig0019271:171081-171100 Msa1372240:intron 25.0%
!! TGTTATTTAAGACAACCTTA+GGG - tig0019271:171308-171327 None:intergenic 25.0%
!! TGTTTGATTTAAAACTAGAG+GGG - tig0019271:171338-171357 None:intergenic 25.0%
!! GTGTTTGATTTAAAACTAGA+GGG - tig0019271:171339-171358 None:intergenic 25.0%
!! AGTGTTTGATTTAAAACTAG+AGG - tig0019271:171340-171359 None:intergenic 25.0%
!! ATTTGATAACAAAATAAGGG+AGG - tig0019271:171365-171384 None:intergenic 25.0%
!!! AGTTTCTCTTCTATTTTTTG+TGG + tig0019271:171506-171525 Msa1372240:intron 25.0%
! GTTAGATAAAGAAACAACAA+AGG - tig0019271:171925-171944 None:intergenic 25.0%
!!! TTGTGTTTTTTGAAAACTAG+AGG + tig0019271:171977-171996 Msa1372240:intron 25.0%
!!! TGTGTTTTTTGAAAACTAGA+GGG + tig0019271:171978-171997 Msa1372240:intron 25.0%
!! TTGGTAAATAGTTTTCCAAA+GGG - tig0019271:172052-172071 None:intergenic 25.0%
!! TTTGGTAAATAGTTTTCCAA+AGG - tig0019271:172053-172072 None:intergenic 25.0%
!! TTTTGGATTTGATTCAAGAT+CGG + tig0019271:172097-172116 Msa1372240:intron 25.0%
! AGCAATAACTAATGAGTAAA+TGG + tig0019271:172438-172457 Msa1372240:intron 25.0%
! TGTTATCCAAAAACTGAAAA+AGG + tig0019271:172478-172497 Msa1372240:intron 25.0%
!! GTTCTTTTGACATGTTATAT+TGG - tig0019271:172844-172863 None:intergenic 25.0%
!! TTCTTTCTTTTAGTCAAAGA+AGG + tig0019271:172876-172895 Msa1372240:intron 25.0%
! AATGAAATAATATCAACAGG+AGG - tig0019271:173316-173335 None:intergenic 25.0%
! GTTCTTTAATTAACGTTCAA+TGG + tig0019271:173379-173398 Msa1372240:intron 25.0%
! TTCTTAACGTATTCACTATA+TGG + tig0019271:173402-173421 Msa1372240:intron 25.0%
! TGAACAAAAAAATAATCACG+AGG - tig0019271:174211-174230 None:intergenic 25.0%
! ACTTAATAAAAATAACCACG+AGG - tig0019271:174244-174263 None:intergenic 25.0%
!!! TTTTCCATTATTGTTTTGGT+GGG + tig0019271:174271-174290 Msa1372240:intron 25.0%
! TACATGAAACAAATATGTAG+GGG - tig0019271:174437-174456 None:intergenic 25.0%
! ATGCATAAATTTGTAGAAAC+CGG - tig0019271:174610-174629 None:intergenic 25.0%
! TACCTTTCTTATGATTTCAA+TGG + tig0019271:174637-174656 Msa1372240:intron 25.0%
!! GTGACATTTTACTTTATTCA+AGG + tig0019271:174659-174678 Msa1372240:intron 25.0%
!!! TCTTTTTTTGGATATTCTTG+GGG - tig0019271:174861-174880 None:intergenic 25.0%
!!! CATCTTTTTTTGGATATTCT+TGG - tig0019271:174863-174882 None:intergenic 25.0%
!!! GATTTGCATTCATCTTTTTT+TGG - tig0019271:174873-174892 None:intergenic 25.0%
! TTTGTCTAGAAAATCCAAAT+CGG + tig0019271:174923-174942 Msa1372240:CDS 25.0%
! AAGATATGTGAAATTTGCAA+TGG - tig0019271:174968-174987 None:intergenic 25.0%
! AATTGATTAAGTTCTTTGGT+CGG + tig0019271:175144-175163 Msa1372240:intron 25.0%
! TTGTAATATTATTGCGTGTT+CGG + tig0019271:175252-175271 Msa1372240:intron 25.0%
!!! TCAGTTGATTTGTATCATAA+CGG + tig0019271:175446-175465 Msa1372240:intron 25.0%
! TAGATGAATAGTTCATTTCA+AGG - tig0019271:175825-175844 None:intergenic 25.0%
! AATTATCTACAGAGTTTCTT+TGG + tig0019271:176194-176213 Msa1372240:intron 25.0%
! TTTGACATTTCATCAAAGAA+GGG - tig0019271:176223-176242 None:intergenic 25.0%
! ATTTGACATTTCATCAAAGA+AGG - tig0019271:176224-176243 None:intergenic 25.0%
! ACTTAGAGAAAAATGACATT+AGG + tig0019271:176383-176402 Msa1372240:intron 25.0%
!!! ATCTAGTTTTTTTTTTTGGG+GGG - tig0019271:176694-176713 None:intergenic 25.0%
!!! CATCTAGTTTTTTTTTTTGG+GGG - tig0019271:176695-176714 None:intergenic 25.0%
! ATTTAAATCAAACTCAACGT+GGG - tig0019271:176808-176827 None:intergenic 25.0%
! AATTTAAATCAAACTCAACG+TGG - tig0019271:176809-176828 None:intergenic 25.0%
!! AAATTCACAAGCTTTTAAAC+TGG + tig0019271:176824-176843 Msa1372240:intron 25.0%
! TAAGATGAAACCATTTAAAC+TGG - tig0019271:176932-176951 None:intergenic 25.0%
! ATCATATAATGACATAGTTC+AGG - tig0019271:176989-177008 None:intergenic 25.0%
!! TTTAAATTTGCTTCAATCAC+AGG + tig0019271:177249-177268 Msa1372240:intron 25.0%
! CCAAATTCTACATGAAAATA+AGG - tig0019271:177373-177392 None:intergenic 25.0%
!!! CCTTATTTTCATGTAGAATT+TGG + tig0019271:177370-177389 Msa1372240:CDS 25.0%
! TTACATAGCAACTATTTCAT+TGG - tig0019271:177796-177815 None:intergenic 25.0%
! TGAAATAGTTGCTATGTAAT+AGG + tig0019271:177797-177816 Msa1372240:three_prime_UTR 25.0%
TAGTGGTAGTTTCAATTTGT+TGG - tig0019271:169312-169331 None:intergenic 30.0%
ACAAATTGAAACTACCACTA+AGG + tig0019271:169312-169331 Msa1372240:five_prime_UTR 30.0%
TGATTGATTGATTACCTTAG+TGG - tig0019271:169329-169348 None:intergenic 30.0%
! TTTCTTAGGGCGTTAAAATT+TGG + tig0019271:169361-169380 Msa1372240:intron 30.0%
! TTCTTAGGGCGTTAAAATTT+GGG + tig0019271:169362-169381 Msa1372240:intron 30.0%
CATAAACCTAATATAGAGAG+AGG - tig0019271:169490-169509 None:intergenic 30.0%
!!! TTTTTTTGCAGGCATTAGTA+AGG + tig0019271:169639-169658 Msa1372240:intron 30.0%
AATCTAGAAAATGCTTTCTG+GGG + tig0019271:169668-169687 Msa1372240:exon 30.0%
GCAAAATCAGACTGAAAAAT+AGG - tig0019271:169765-169784 None:intergenic 30.0%
TGTATATACTAGGTACAAGA+TGG + tig0019271:169806-169825 Msa1372240:intron 30.0%
GTATATACTAGGTACAAGAT+GGG + tig0019271:169807-169826 Msa1372240:intron 30.0%
ATCAGATATTAGGAGGAAAA+AGG + tig0019271:169868-169887 Msa1372240:CDS 30.0%
AAGGGAAAAAAGAAAAGAGA+TGG + tig0019271:170040-170059 Msa1372240:CDS 30.0%
GAAAAAAGAAAAGAGATGGA+CGG + tig0019271:170044-170063 Msa1372240:CDS 30.0%
! CATCTTTTGAACATGACTTT+TGG - tig0019271:170159-170178 None:intergenic 30.0%
CAAAAGTCATGTTCAAAAGA+TGG + tig0019271:170157-170176 Msa1372240:CDS 30.0%
CGATATTGCAAGAAAAGAAA+TGG + tig0019271:170213-170232 Msa1372240:CDS 30.0%
! GAGAAACTTTTGTGTCTATA+TGG + tig0019271:170519-170538 Msa1372240:intron 30.0%
TACTATCTTTCATTGATGAG+TGG - tig0019271:170552-170571 None:intergenic 30.0%
CTCATCAATGAAAGATAGTA+TGG + tig0019271:170552-170571 Msa1372240:intron 30.0%
TTGAATTGTCCAATATACCA+TGG + tig0019271:170598-170617 Msa1372240:intron 30.0%
AGATTAATGCCATGGTATAT+TGG - tig0019271:170610-170629 None:intergenic 30.0%
GAATGGTGTATTCAAAACAT+TGG - tig0019271:170748-170767 None:intergenic 30.0%
! AGCATTTCCCTTTAAGTTAT+AGG + tig0019271:170823-170842 Msa1372240:intron 30.0%
! GCATTTCCCTTTAAGTTATA+GGG + tig0019271:170824-170843 Msa1372240:intron 30.0%
GATGTATCCCTATAACTTAA+AGG - tig0019271:170834-170853 None:intergenic 30.0%
GGAAAATTGTATCACAGTTT+AGG + tig0019271:170959-170978 Msa1372240:intron 30.0%
CTATAGAGTTTAATGTCACA+CGG + tig0019271:170992-171011 Msa1372240:intron 30.0%
ATACAAGACAATGTAGGATT+TGG + tig0019271:171087-171106 Msa1372240:intron 30.0%
! TGGTAATGTTCTGTCTTAAA+TGG + tig0019271:171159-171178 Msa1372240:intron 30.0%
TAGAATAATCCAATAGTCAG+TGG + tig0019271:171243-171262 Msa1372240:intron 30.0%
! GTTATTTAAGACAACCTTAG+GGG - tig0019271:171307-171326 None:intergenic 30.0%
!! GTGTTATTTAAGACAACCTT+AGG - tig0019271:171309-171328 None:intergenic 30.0%
! TTAATGGTGTTAAGATGGAA+GGG - tig0019271:171400-171419 None:intergenic 30.0%
! TTTAATGGTGTTAAGATGGA+AGG - tig0019271:171401-171420 None:intergenic 30.0%
! GAGATTTAATGGTGTTAAGA+TGG - tig0019271:171405-171424 None:intergenic 30.0%
GAGTTAACAGAGAGATTTAA+TGG - tig0019271:171416-171435 None:intergenic 30.0%
AATGCAATTTCACCAAACAA+AGG + tig0019271:171598-171617 Msa1372240:intron 30.0%
ACAAAAAACCAAAGAACAGA+AGG + tig0019271:171702-171721 Msa1372240:intron 30.0%
CAAAAAACCAAAGAACAGAA+GGG + tig0019271:171703-171722 Msa1372240:intron 30.0%
AAAAAACCAAAGAACAGAAG+GGG + tig0019271:171704-171723 Msa1372240:intron 30.0%
! ATTCAAAAGGCATGAAACAA+TGG - tig0019271:171800-171819 None:intergenic 30.0%
CCTGTAAAACTTGAATTTCA+TGG - tig0019271:171831-171850 None:intergenic 30.0%
!! CCATGAAATTCAAGTTTTAC+AGG + tig0019271:171828-171847 Msa1372240:intron 30.0%
!!! GTGTTTTTTGAAAACTAGAG+GGG + tig0019271:171979-171998 Msa1372240:intron 30.0%
!!! TGTTTTTTGAAAACTAGAGG+GGG + tig0019271:171980-171999 Msa1372240:intron 30.0%
ATTTAAGTAAAACTCAAGGG+AGG + tig0019271:172013-172032 Msa1372240:intron 30.0%
ATCTACAATACATCTGCATT+GGG - tig0019271:172248-172267 None:intergenic 30.0%
TATCTACAATACATCTGCAT+TGG - tig0019271:172249-172268 None:intergenic 30.0%
CAACTTCAAATATTATGCCA+AGG + tig0019271:172337-172356 Msa1372240:intron 30.0%
AATGACAATACAACAACAGA+AGG - tig0019271:172367-172386 None:intergenic 30.0%
! CCAAAAACTGAAAAAGGTAT+CGG + tig0019271:172484-172503 Msa1372240:intron 30.0%
TGAAGTATGATTTAAGCCTT+TGG + tig0019271:172542-172561 Msa1372240:intron 30.0%
TAAGCTGCAAACAAAATGAA+GGG - tig0019271:172748-172767 None:intergenic 30.0%
ATAAGCTGCAAACAAAATGA+AGG - tig0019271:172749-172768 None:intergenic 30.0%
AGATAAGGATTCAATTCCTT+AGG - tig0019271:172907-172926 None:intergenic 30.0%
GGAATTGAATCCTTATCTAA+AGG + tig0019271:172909-172928 Msa1372240:CDS 30.0%
AATCCTTATCTAAAGGATGA+TGG + tig0019271:172916-172935 Msa1372240:CDS 30.0%
AAAGAATGTGTGAAAAGCAA+GGG - tig0019271:173104-173123 None:intergenic 30.0%
TAAAGAATGTGTGAAAAGCA+AGG - tig0019271:173105-173124 None:intergenic 30.0%
! CATTTTTATAGGATAGACAG+AGG - tig0019271:173131-173150 None:intergenic 30.0%
TATTATTCTGTTAGGACAGA+AGG + tig0019271:173152-173171 Msa1372240:intron 30.0%
TAGAGGGAAGATAATTAGTT+TGG + tig0019271:173192-173211 Msa1372240:intron 30.0%
! AGAGGGAAGATAATTAGTTT+GGG + tig0019271:173193-173212 Msa1372240:intron 30.0%
ACGTTAATTAAAGAACGGAA+TGG - tig0019271:173375-173394 None:intergenic 30.0%
GAATTTCGCTTATGAAATAC+TGG + tig0019271:173723-173742 Msa1372240:intron 30.0%
ACATAAAAAATACTCCTCCT+CGG + tig0019271:173753-173772 Msa1372240:CDS 30.0%
GATAATGAATCTTGCACTTT+AGG - tig0019271:173797-173816 None:intergenic 30.0%
AAGTGCAAGATTCATTATCT+TGG + tig0019271:173798-173817 Msa1372240:CDS 30.0%
!!! TGTTTTGGAAAGTTTTGAAG+CGG + tig0019271:173961-173980 Msa1372240:CDS 30.0%
! GTGCTTTTCCATTATTGTTT+TGG + tig0019271:174267-174286 Msa1372240:intron 30.0%
!!! CTTTTCCATTATTGTTTTGG+TGG + tig0019271:174270-174289 Msa1372240:intron 30.0%
TGAAATTAGATCAAGAACTG+AGG + tig0019271:174341-174360 Msa1372240:CDS 30.0%
GAAATTAGATCAAGAACTGA+GGG + tig0019271:174342-174361 Msa1372240:CDS 30.0%
CACCATTGAAATCATAAGAA+AGG - tig0019271:174642-174661 None:intergenic 30.0%
! TTCTTTCTACTCTTTTTGCT+TGG - tig0019271:174823-174842 None:intergenic 30.0%
AAAAAGAGTAGAAAGAAGCA+AGG + tig0019271:174826-174845 Msa1372240:CDS 30.0%
! TTGGATTTTCTAGACAAAAG+AGG - tig0019271:174921-174940 None:intergenic 30.0%
GAAATTAAACTCACGTGAAT+GGG - tig0019271:175039-175058 None:intergenic 30.0%
AGAAATTAAACTCACGTGAA+TGG - tig0019271:175040-175059 None:intergenic 30.0%
!!! AAGCTTATGGTTTTTTCAAC+TGG - tig0019271:175094-175113 None:intergenic 30.0%
ATAAACCATATTTGGATCCA+AGG - tig0019271:175284-175303 None:intergenic 30.0%
GCTCTATCATAAACCATATT+TGG - tig0019271:175292-175311 None:intergenic 30.0%
! TGGTTTATGATAGAGCATTA+TGG + tig0019271:175296-175315 Msa1372240:intron 30.0%
TGATTCATGCTGTCATATTA+AGG - tig0019271:175516-175535 None:intergenic 30.0%
CTGACCTTCTTAAAGTATAA+AGG - tig0019271:175725-175744 None:intergenic 30.0%
!! TATAAGAAAAGCACTGATTC+TGG - tig0019271:175797-175816 None:intergenic 30.0%
! GAATGTATTCAGAGCATTTA+AGG + tig0019271:176002-176021 Msa1372240:intron 30.0%
CCTTATTATAGAAACGCTAT+GGG - tig0019271:176063-176082 None:intergenic 30.0%
ACCTTATTATAGAAACGCTA+TGG - tig0019271:176064-176083 None:intergenic 30.0%
AGATAGTTCAAACTGCAAAT+TGG + tig0019271:176244-176263 Msa1372240:intron 30.0%
AAAAAGTTGACAAACACACA+AGG - tig0019271:176324-176343 None:intergenic 30.0%
! TTGTGTGTTTGTCAACTTTT+TGG + tig0019271:176323-176342 Msa1372240:intron 30.0%
! TGTGTGTTTGTCAACTTTTT+GGG + tig0019271:176324-176343 Msa1372240:intron 30.0%
! ACCTTTTGGTATCAAATTTG+TGG - tig0019271:176456-176475 None:intergenic 30.0%
TCAATATAGAGTAATGAAGC+AGG - tig0019271:176487-176506 None:intergenic 30.0%
TAGATGTCAAATAAAGGACA+GGG + tig0019271:176709-176728 Msa1372240:intron 30.0%
AACCACATCATGTATAAAAC+TGG + tig0019271:176895-176914 Msa1372240:intron 30.0%
!! ATCCAGTTTTATACATGATG+TGG - tig0019271:176900-176919 None:intergenic 30.0%
TCAGTTTCTACCAGTTTAAA+TGG + tig0019271:176919-176938 Msa1372240:intron 30.0%
!! TAAGTTTTAATGACCACATG+TGG - tig0019271:177030-177049 None:intergenic 30.0%
TGATATTCCAGTATAGCATT+TGG + tig0019271:177137-177156 Msa1372240:intron 30.0%
! TTTTTCACCAAATGCTATAC+TGG - tig0019271:177147-177166 None:intergenic 30.0%
GAAGCAAATTTAAAAACGGA+CGG - tig0019271:177243-177262 None:intergenic 30.0%
TGAAAATAAGGAAAGTCCTT+GGG - tig0019271:177361-177380 None:intergenic 30.0%
ATGAAAATAAGGAAAGTCCT+TGG - tig0019271:177362-177381 None:intergenic 30.0%
GTAGAATTTGGTCTAAACAA+AGG + tig0019271:177382-177401 Msa1372240:CDS 30.0%
! CCTTTTCATCATCAATAACA+TGG - tig0019271:177414-177433 None:intergenic 30.0%
!! CCATGTTATTGATGATGAAA+AGG + tig0019271:177411-177430 Msa1372240:CDS 30.0%
!!! CATTGGTAATATGCTGATTT+TGG - tig0019271:177779-177798 None:intergenic 30.0%
! TTTTGTAGTTCACTATTCCC+CGG + tig0019271:169043-169062 Msa1372240:five_prime_UTR 35.0%
! ACTAATAGAAGGGTGTAGAA+TGG - tig0019271:169188-169207 None:intergenic 35.0%
CGGAGAGAAAACTAATAGAA+GGG - tig0019271:169198-169217 None:intergenic 35.0%
ACGGAGAGAAAACTAATAGA+AGG - tig0019271:169199-169218 None:intergenic 35.0%
!! TGGTAGTTTCAATTTGTTGG+AGG - tig0019271:169309-169328 None:intergenic 35.0%
TGATTGATTGATCCTGCAAT+CGG + tig0019271:169411-169430 Msa1372240:intron 35.0%
AATCGACCTCTCTCTATATT+AGG + tig0019271:169481-169500 Msa1372240:intron 35.0%
GTTACTGCGTTGTATATACT+AGG + tig0019271:169796-169815 Msa1372240:intron 35.0%
TTAGGAGGAAAAAGGATAAG+AGG + tig0019271:169876-169895 Msa1372240:CDS 35.0%
TGAATACCACTTCTTCTTTC+TGG - tig0019271:169951-169970 None:intergenic 35.0%
TGCAAGAAAAGAAATGGGAT+TGG + tig0019271:170219-170238 Msa1372240:CDS 35.0%
GAAAAGAAATGGGATTGGAT+TGG + tig0019271:170224-170243 Msa1372240:CDS 35.0%
GCCCTTTGTGGAATAAAAAA+AGG + tig0019271:170677-170696 Msa1372240:intron 35.0%
ACTTAAAGGGAAATGCTAAC+AGG - tig0019271:170820-170839 None:intergenic 35.0%
! TGTTTGGATTTTGGATCCTA+TGG - tig0019271:170892-170911 None:intergenic 35.0%
AAAATCCAAACAGTGTGGAT+GGG + tig0019271:170900-170919 Msa1372240:intron 35.0%
!! AAGGTGCCACTCAATATTAA+AGG + tig0019271:170938-170957 Msa1372240:intron 35.0%
ATTAAACTCTATAGTGCTGC+AGG - tig0019271:170986-171005 None:intergenic 35.0%
AAAGAGACGACAAGAAAGTA+AGG + tig0019271:171016-171035 Msa1372240:intron 35.0%
AATCATCGCAGATGAAGTTT+GGG + tig0019271:171115-171134 Msa1372240:intron 35.0%
TACCATCTTTGCTACGATAA+GGG - tig0019271:171144-171163 None:intergenic 35.0%
TTACCATCTTTGCTACGATA+AGG - tig0019271:171145-171164 None:intergenic 35.0%
ATAATCCAATAGTCAGTGGA+AGG + tig0019271:171247-171266 Msa1372240:intron 35.0%
!! GGGCTATTTTATCCTTTGTT+TGG - tig0019271:171613-171632 None:intergenic 35.0%
ACACAGAAAAGAAACACTTC+AGG + tig0019271:171676-171695 Msa1372240:intron 35.0%
!!! TTTTTTCCCCTTCTGTTCTT+TGG - tig0019271:171713-171732 None:intergenic 35.0%
AAAGAACAGAAGGGGAAAAA+AGG + tig0019271:171712-171731 Msa1372240:intron 35.0%
AACAGTGTTAAATTAAGGGG+AGG + tig0019271:171953-171972 Msa1372240:intron 35.0%
! CTTTTGTCATGTTATAGTGC+AGG + tig0019271:172211-172230 Msa1372240:intron 35.0%
TCTTACGTTCTATCTTCTAG+AGG + tig0019271:172270-172289 Msa1372240:intron 35.0%
GAAATTACAAGTTTGAGCTG+TGG - tig0019271:172302-172321 None:intergenic 35.0%
!!! CCGATACCTTTTTCAGTTTT+TGG - tig0019271:172487-172506 None:intergenic 35.0%
TTCCATATTGATGTTCCAAC+AGG + tig0019271:172687-172706 Msa1372240:intron 35.0%
GTGAAGTGTATGTTCAGTTA+TGG + tig0019271:172709-172728 Msa1372240:intron 35.0%
AAGCTGCAAACAAAATGAAG+GGG - tig0019271:172747-172766 None:intergenic 35.0%
CTTCCATCATCCTTTAGATA+AGG - tig0019271:172922-172941 None:intergenic 35.0%
!! TATCTAAAGGATGATGGAAG+TGG + tig0019271:172922-172941 Msa1372240:CDS 35.0%
ATCTTTGCTTGGAAGAATAG+AGG + tig0019271:173175-173194 Msa1372240:intron 35.0%
TCTTTGCTTGGAAGAATAGA+GGG + tig0019271:173176-173195 Msa1372240:intron 35.0%
AAATGTGTAAGTGTAGTGAG+AGG + tig0019271:173216-173235 Msa1372240:intron 35.0%
AGAATGATGAAACCCTTGTA+AGG + tig0019271:173280-173299 Msa1372240:intron 35.0%
TTCACTATATGGATACGTAC+AGG + tig0019271:173413-173432 Msa1372240:intron 35.0%
CTATAAGAAGCAGACAAAGA+GGG + tig0019271:173523-173542 Msa1372240:CDS 35.0%
TATAAGAAGCAGACAAAGAG+GGG + tig0019271:173524-173543 Msa1372240:CDS 35.0%
ATTCTGATAAGCCTATCCAA+CGG + tig0019271:173568-173587 Msa1372240:CDS 35.0%
! TATCCAACGGGATTCTAAAA+GGG + tig0019271:173581-173600 Msa1372240:CDS 35.0%
CTTTAGGTGCTTTCATTTCA+TGG - tig0019271:173781-173800 None:intergenic 35.0%
TGAAGAAGCTGATAGACTAA+TGG + tig0019271:174099-174118 Msa1372240:CDS 35.0%
AAAATAATCACGAGGCTAGA+AGG - tig0019271:174203-174222 None:intergenic 35.0%
GTTCAAAAAAAAAAGCCTCG+TGG + tig0019271:174226-174245 Msa1372240:intron 35.0%
TTTCGGATGTGAAAACATTG+TGG + tig0019271:174457-174476 Msa1372240:intron 35.0%
TGAAAACATTGTGGCTAAGA+TGG + tig0019271:174466-174485 Msa1372240:intron 35.0%
! ACGTTTTGCATCAATAGTAC+CGG + tig0019271:174588-174607 Msa1372240:intron 35.0%
ATATCTTCTGAGCAGAAGAA+AGG + tig0019271:174697-174716 Msa1372240:CDS 35.0%
AATGCAGAACAAGCAGTTTA+AGG + tig0019271:174756-174775 Msa1372240:CDS 35.0%
! GCAGTTTAAGGTTTATACTC+AGG + tig0019271:174768-174787 Msa1372240:CDS 35.0%
! GTTTAAGGTTTATACTCAGG+CGG + tig0019271:174771-174790 Msa1372240:CDS 35.0%
!! GATGAATATGACTTTGAGAC+TGG + tig0019271:174796-174815 Msa1372240:CDS 35.0%
TTCAACGAACAACAAGCTTA+TGG - tig0019271:175107-175126 None:intergenic 35.0%
AGTAACCTTGGATCCAAATA+TGG + tig0019271:175276-175295 Msa1372240:intron 35.0%
AGTGTTTCTTGAAACTGTGA+TGG + tig0019271:175628-175647 Msa1372240:CDS 35.0%
GTGTTTCTTGAAACTGTGAT+GGG + tig0019271:175629-175648 Msa1372240:CDS 35.0%
! GGCTCCTTTATACTTTAAGA+AGG + tig0019271:175718-175737 Msa1372240:CDS 35.0%
AAAACATCATCAGTGTTCCA+TGG + tig0019271:175889-175908 Msa1372240:intron 35.0%
AAACATCATCAGTGTTCCAT+GGG + tig0019271:175890-175909 Msa1372240:intron 35.0%
CCCATAGCGTTTCTATAATA+AGG + tig0019271:176060-176079 Msa1372240:intron 35.0%
!! TTGGGGAGTAACTTGTTAAA+TGG + tig0019271:176156-176175 Msa1372240:intron 35.0%
!! CTTGTTAAATGGTTCTAGCA+TGG + tig0019271:176167-176186 Msa1372240:intron 35.0%
! GGTTTTCTCATTCAACTTCA+TGG - tig0019271:176271-176290 None:intergenic 35.0%
! GTGTGTTTGTCAACTTTTTG+GGG + tig0019271:176325-176344 Msa1372240:intron 35.0%
TCTAAGTACGATACATGACT+AGG - tig0019271:176370-176389 None:intergenic 35.0%
ATCCAAATGTCCTCGTATAA+GGG - tig0019271:176411-176430 None:intergenic 35.0%
GCCACAAATTTGATACCAAA+AGG + tig0019271:176452-176471 Msa1372240:intron 35.0%
!! CTGCTTCATTTTTGTTTCCA+TGG + tig0019271:176545-176564 Msa1372240:intron 35.0%
!! TTTTGTTTCCATGGAGTACT+CGG + tig0019271:176554-176573 Msa1372240:intron 35.0%
CATGTTTAGATATGGTCATG+TGG + tig0019271:176634-176653 Msa1372240:intron 35.0%
!!! AGTTTTTTTTTTTGGGGGGT+GGG - tig0019271:176690-176709 None:intergenic 35.0%
!!! TAGTTTTTTTTTTTGGGGGG+TGG - tig0019271:176691-176710 None:intergenic 35.0%
CTAGATGTCAAATAAAGGAC+AGG + tig0019271:176708-176727 Msa1372240:intron 35.0%
TCATGATTCATGATTTCACG+TGG + tig0019271:176759-176778 Msa1372240:intron 35.0%
! CACAAGCTTTTAAACTGGTT+CGG + tig0019271:176829-176848 Msa1372240:intron 35.0%
AATGATCCCAAAGGAAAACA+AGG - tig0019271:177118-177137 None:intergenic 35.0%
TGGAATATCAATGATCCCAA+AGG - tig0019271:177127-177146 None:intergenic 35.0%
! ACTCGTATCAATGAGTCTTT+TGG - tig0019271:177314-177333 None:intergenic 35.0%
AAGGAGTTTAAGAGTAGTCT+TGG + tig0019271:177430-177449 Msa1372240:CDS 35.0%
AGGAGTTTAAGAGTAGTCTT+GGG + tig0019271:177431-177450 Msa1372240:CDS 35.0%
AAGACATGTATAGACGTCAA+AGG + tig0019271:177491-177510 Msa1372240:CDS 35.0%
CAATATAACTCGTTTATGCC+CGG + tig0019271:177729-177748 Msa1372240:three_prime_UTR 35.0%
AATATAACTCGTTTATGCCC+GGG + tig0019271:177730-177749 Msa1372240:three_prime_UTR 35.0%
! ATTTGTTGGAGGCTGCAAAT+TGG - tig0019271:169298-169317 None:intergenic 40.0%
GATTGATTGATCCTGCAATC+GGG + tig0019271:169412-169431 Msa1372240:intron 40.0%
ATTGATTGATCCTGCAATCG+GGG + tig0019271:169413-169432 Msa1372240:intron 40.0%
TCCCTGCTGTGAAATTGATT+AGG + tig0019271:169449-169468 Msa1372240:intron 40.0%
CCCTAATCAATTTCACAGCA+GGG - tig0019271:169453-169472 None:intergenic 40.0%
CCCTGCTGTGAAATTGATTA+GGG + tig0019271:169450-169469 Msa1372240:intron 40.0%
ACCCTAATCAATTTCACAGC+AGG - tig0019271:169454-169473 None:intergenic 40.0%
GCATAAACCTCAATCAGCAA+GGG - tig0019271:169528-169547 None:intergenic 40.0%
TGCATAAACCTCAATCAGCA+AGG - tig0019271:169529-169548 None:intergenic 40.0%
TAACTCTACAAACCTGGTCA+CGG - tig0019271:169707-169726 None:intergenic 40.0%
GTATGGTAACTCTACAAACC+TGG - tig0019271:169713-169732 None:intergenic 40.0%
CAGTGAGACTGATAGAAGTA+TGG - tig0019271:169730-169749 None:intergenic 40.0%
TACAAGATGGGAACTTGGAT+AGG + tig0019271:169819-169838 Msa1372240:CDS 40.0%
ACAAGATGGGAACTTGGATA+GGG + tig0019271:169820-169839 Msa1372240:CDS 40.0%
GAAGACTCTTCTTCTTCAGA+TGG + tig0019271:170100-170119 Msa1372240:CDS 40.0%
!!! ATGACTTTTGGTGTTTCCGT+TGG - tig0019271:170147-170166 None:intergenic 40.0%
TCATGTTCAAAAGATGGGAG+CGG + tig0019271:170163-170182 Msa1372240:CDS 40.0%
TGCGTAAGTCTGAAAGTAAG+AGG + tig0019271:170248-170267 Msa1372240:CDS 40.0%
!! TCCTTTGTTTCTGAAACAGC+TGG - tig0019271:170274-170293 None:intergenic 40.0%
AACAAAGGAGATATTGCCAG+AGG + tig0019271:170285-170304 Msa1372240:CDS 40.0%
TAGACATTTGAACAGCTGAG+GGG - tig0019271:170354-170373 None:intergenic 40.0%
CTAGACATTTGAACAGCTGA+GGG - tig0019271:170355-170374 None:intergenic 40.0%
TTATGCCCGTCATAATCTGT+TGG + tig0019271:170432-170451 Msa1372240:intron 40.0%
ACGACACCAACAGATTATGA+CGG - tig0019271:170441-170460 None:intergenic 40.0%
GAAAGATAGTATGGAACGCA+AGG + tig0019271:170561-170580 Msa1372240:intron 40.0%
GATCCAAAATCCAAACAGTG+TGG + tig0019271:170895-170914 Msa1372240:intron 40.0%
! CATCCACACTGTTTGGATTT+TGG - tig0019271:170901-170920 None:intergenic 40.0%
CAAAATCCAAACAGTGTGGA+TGG + tig0019271:170899-170918 Msa1372240:intron 40.0%
! TGGGTGTGATTTGTGATAGA+AGG + tig0019271:170919-170938 Msa1372240:intron 40.0%
AAGGTCTTTGTCGCAAATGT+TGG + tig0019271:171035-171054 Msa1372240:intron 40.0%
CTTTGTCGCAAATGTTGGAA+TGG + tig0019271:171040-171059 Msa1372240:intron 40.0%
GAATCATCGCAGATGAAGTT+TGG + tig0019271:171114-171133 Msa1372240:intron 40.0%
!!! GAAGGCGATGTTTTGGAAAA+GGG + tig0019271:171265-171284 Msa1372240:intron 40.0%
AATTACACTAACCTCCCCTA+AGG + tig0019271:171290-171309 Msa1372240:intron 40.0%
! ATTTAAGACAACCTTAGGGG+AGG - tig0019271:171304-171323 None:intergenic 40.0%
ATAGCCCTAGAAGTTGCATA+CGG + tig0019271:171626-171645 Msa1372240:intron 40.0%
AAAGCCGTATGCAACTTCTA+GGG - tig0019271:171633-171652 None:intergenic 40.0%
CATGGCTGATGCAATTCAAA+AGG - tig0019271:171813-171832 None:intergenic 40.0%
! GGTCAATGTAATTTGCCCTT+TGG + tig0019271:172034-172053 Msa1372240:intron 40.0%
! CTTTTCTCAATAGGTGGGAT+TGG - tig0019271:172151-172170 None:intergenic 40.0%
CAATCCCACCTATTGAGAAA+AGG + tig0019271:172149-172168 Msa1372240:intron 40.0%
! AAAAGTTTTACAGCACCAGG+AGG - tig0019271:172196-172215 None:intergenic 40.0%
! GACAAAAGTTTTACAGCACC+AGG - tig0019271:172199-172218 None:intergenic 40.0%
! CGGATTCAGATAGTTAGCTT+TGG + tig0019271:172504-172523 Msa1372240:intron 40.0%
CACCTGTTGGAACATCAATA+TGG - tig0019271:172692-172711 None:intergenic 40.0%
TGAACATACACTTCACCTGT+TGG - tig0019271:172705-172724 None:intergenic 40.0%
GTCAAAGAAGGCAAATCCTA+AGG + tig0019271:172888-172907 Msa1372240:intron 40.0%
AAGTGGTTACCCAGAAGAAA+GGG + tig0019271:172939-172958 Msa1372240:CDS 40.0%
TAACTCCATCCCTTTCTTCT+GGG - tig0019271:172951-172970 None:intergenic 40.0%
TTAACTCCATCCCTTTCTTC+TGG - tig0019271:172952-172971 None:intergenic 40.0%
AGCAAGGGAATAAAACCTCT+TGG - tig0019271:173089-173108 None:intergenic 40.0%
TGAGAGGACCATTAGCATTT+GGG + tig0019271:173232-173251 Msa1372240:intron 40.0%
GTTCAGTTCCCAAATGCTAA+TGG - tig0019271:173243-173262 None:intergenic 40.0%
GGAGACAATTCTCCTTACAA+GGG - tig0019271:173295-173314 None:intergenic 40.0%
AGGAGACAATTCTCCTTACA+AGG - tig0019271:173296-173315 None:intergenic 40.0%
ATATGGATACGTACAGGTTG+TGG + tig0019271:173419-173438 Msa1372240:intron 40.0%
TATGGATACGTACAGGTTGT+GGG + tig0019271:173420-173439 Msa1372240:intron 40.0%
GCTATAAGAAGCAGACAAAG+AGG + tig0019271:173522-173541 Msa1372240:CDS 40.0%
TGGATAGGCTTATCAGAATC+TGG - tig0019271:173567-173586 None:intergenic 40.0%
TTCTGATAAGCCTATCCAAC+GGG + tig0019271:173569-173588 Msa1372240:CDS 40.0%
!!! CTTTTAGAATCCCGTTGGAT+AGG - tig0019271:173582-173601 None:intergenic 40.0%
CTATCCAACGGGATTCTAAA+AGG + tig0019271:173580-173599 Msa1372240:CDS 40.0%
!!! TTACCCTTTTAGAATCCCGT+TGG - tig0019271:173587-173606 None:intergenic 40.0%
CGAAATTCAGTGAAGTGCAA+TGG - tig0019271:173711-173730 None:intergenic 40.0%
TTCGCTTATGAAATACTGGC+AGG + tig0019271:173727-173746 Msa1372240:intron 40.0%
TATGCGTGAGTTAGTTAGCA+AGG + tig0019271:173916-173935 Msa1372240:CDS 40.0%
ACTTTCCAAAACAGAGCCAT+CGG - tig0019271:173954-173973 None:intergenic 40.0%
!!! GGAAAGTTTTGAAGCGGAAA+AGG + tig0019271:173967-173986 Msa1372240:CDS 40.0%
!! ACTACTGCTTTTCTTTCACC+AGG - tig0019271:174013-174032 None:intergenic 40.0%
TAACATGAGTGCAAACCAGT+TGG + tig0019271:174039-174058 Msa1372240:CDS 40.0%
TCCTTTCAAACGAAGTTGCA+TGG - tig0019271:174074-174093 None:intergenic 40.0%
CTAATGGTAAGCCCATAAGA+CGG + tig0019271:174115-174134 Msa1372240:intron 40.0%
TAATGGTAAGCCCATAAGAC+GGG + tig0019271:174116-174135 Msa1372240:intron 40.0%
!!! AAGGGTTTTGAACACAAAGC+AGG + tig0019271:174305-174324 Msa1372240:CDS 40.0%
!!! AGGGTTTTGAACACAAAGCA+GGG + tig0019271:174306-174325 Msa1372240:CDS 40.0%
!! AGGGAAGTTCTAGTTCTAGA+AGG + tig0019271:174361-174380 Msa1372240:CDS 40.0%
ATTCAAGGTATGCTATGCAG+AGG + tig0019271:174674-174693 Msa1372240:intron 40.0%
AAGAGTAGAAAGAAGCAAGG+AGG + tig0019271:174829-174848 Msa1372240:CDS 40.0%
AAAGAGGCAACGTTCTTTCT+GGG - tig0019271:174905-174924 None:intergenic 40.0%
AAAAGAGGCAACGTTCTTTC+TGG - tig0019271:174906-174925 None:intergenic 40.0%
ATGGACACAACAAGATGCAT+CGG - tig0019271:174949-174968 None:intergenic 40.0%
CATATCTTATGTTGCCACAG+TGG + tig0019271:174980-174999 Msa1372240:CDS 40.0%
GGTAAAATACAGCAATGACC+AGG - tig0019271:175018-175037 None:intergenic 40.0%
! TGGTGGTTGTTGTTGTTGTT+TGG + tig0019271:175364-175383 Msa1372240:intron 40.0%
GCATGAATCAGCTACAAGAA+CGG + tig0019271:175526-175545 Msa1372240:intron 40.0%
! AACGGTGGATGATAATGTGT+GGG + tig0019271:175544-175563 Msa1372240:CDS 40.0%
! TCTTGAAACTGTGATGGGAT+TGG + tig0019271:175634-175653 Msa1372240:CDS 40.0%
TTAGCAACATCTTTGGGTAC+AGG - tig0019271:175695-175714 None:intergenic 40.0%
ACCCAAAGATGTTGCTAAAG+AGG + tig0019271:175697-175716 Msa1372240:CDS 40.0%
GCCTCTTTAGCAACATCTTT+GGG - tig0019271:175701-175720 None:intergenic 40.0%
AGCCTCTTTAGCAACATCTT+TGG - tig0019271:175702-175721 None:intergenic 40.0%
AACATCATCAGTGTTCCATG+GGG + tig0019271:175891-175910 Msa1372240:intron 40.0%
!!! TCAACTTTTTGGGGTGTCTT+GGG + tig0019271:176334-176353 Msa1372240:intron 40.0%
ACATTAGGTTCCCTTATACG+AGG + tig0019271:176398-176417 Msa1372240:intron 40.0%
TTCCCTTATACGAGGACATT+TGG + tig0019271:176406-176425 Msa1372240:intron 40.0%
CATCCAAATGTCCTCGTATA+AGG - tig0019271:176412-176431 None:intergenic 40.0%
GACATTTGGATGACCTAACT+AGG + tig0019271:176420-176439 Msa1372240:intron 40.0%
AGCAATCAGTGTAGACTGTA+TGG - tig0019271:176527-176546 None:intergenic 40.0%
TGGTTTAGTGTGAGATTTGC+CGG + tig0019271:176592-176611 Msa1372240:intron 40.0%
TTTGCCGGATCTTAAAACTG+CGG + tig0019271:176607-176626 Msa1372240:intron 40.0%
!!! ACATCCGCAGTTTTAAGATC+CGG - tig0019271:176614-176633 None:intergenic 40.0%
GCGGATGTCATGTTTAGATA+TGG + tig0019271:176626-176645 Msa1372240:intron 40.0%
! GGATGGATGTCTCAGATTTT+AGG - tig0019271:176669-176688 None:intergenic 40.0%
ATAAAGGACAGGGATGATAG+TGG + tig0019271:176719-176738 Msa1372240:intron 40.0%
!!! TACCCACCTTGTTTTCCTTT+GGG + tig0019271:177109-177128 Msa1372240:intron 40.0%
ATCCCAAAGGAAAACAAGGT+GGG - tig0019271:177114-177133 None:intergenic 40.0%
AAAAACGGACGGTGAGTTTA+TGG - tig0019271:177232-177251 None:intergenic 40.0%
TTGATGAAGCAGAAGATGAG+TGG + tig0019271:177275-177294 Msa1372240:CDS 40.0%
ACTCATTGATACGAGTCAGA+AGG + tig0019271:177318-177337 Msa1372240:CDS 40.0%
CTCATTGATACGAGTCAGAA+GGG + tig0019271:177319-177338 Msa1372240:CDS 40.0%
TTTACGCAACTCAATTCCCA+AGG + tig0019271:177342-177361 Msa1372240:CDS 40.0%
!! CTTGGGTTGAATGTCATTAG+AGG + tig0019271:177448-177467 Msa1372240:CDS 40.0%
!!! TTGCTAGCTTTTCCAAAGAC+TGG + tig0019271:177545-177564 Msa1372240:CDS 40.0%
!!! TGCTAGCTTTTCCAAAGACT+GGG + tig0019271:177546-177565 Msa1372240:CDS 40.0%
GTCAAAATGATCCCAGTCTT+TGG - tig0019271:177560-177579 None:intergenic 40.0%
!! AAGACTGGGATCATTTTGAC+TGG + tig0019271:177560-177579 Msa1372240:CDS 40.0%
AACTAGCATCTCTTGGCAAT+TGG - tig0019271:177691-177710 None:intergenic 40.0%
CTATGATTCTCATAAAGCCC+GGG - tig0019271:177750-177769 None:intergenic 40.0%
CCTATGATTCTCATAAAGCC+CGG - tig0019271:177751-177770 None:intergenic 40.0%
!! GAAGTTTTGTGGTGAATCCG+GGG - tig0019271:169063-169082 None:intergenic 45.0%
!! GGAAGTTTTGTGGTGAATCC+GGG - tig0019271:169064-169083 None:intergenic 45.0%
!! GGGAAGTTTTGTGGTGAATC+CGG - tig0019271:169065-169084 None:intergenic 45.0%
AAAGAAGGAAGGAGAGGTTG+TGG - tig0019271:169143-169162 None:intergenic 45.0%
GAAAGGAAAGAAGGAAGGAG+AGG - tig0019271:169149-169168 None:intergenic 45.0%
!! GTGTAGAATGGTAGTGGAGT+GGG - tig0019271:169176-169195 None:intergenic 45.0%
! AGAAGGGTGTAGAATGGTAG+TGG - tig0019271:169182-169201 None:intergenic 45.0%
CACAGCAGGGATATACGATT+AGG - tig0019271:169440-169459 None:intergenic 45.0%
! TTCTCAACCCTTGCTGATTG+AGG + tig0019271:169518-169537 Msa1372240:intron 45.0%
AACTCTACAAACCTGGTCAC+GGG - tig0019271:169706-169725 None:intergenic 45.0%
CTAGGTACAAGATGGGAACT+TGG + tig0019271:169814-169833 Msa1372240:intron 45.0%
AAGGGTCCAGAAAGAAGAAG+TGG + tig0019271:169942-169961 Msa1372240:CDS 45.0%
CAACTGAAAGTGAAAGCGAC+CGG + tig0019271:169996-170015 Msa1372240:CDS 45.0%
AACTGAAAGTGAAAGCGACC+GGG + tig0019271:169997-170016 Msa1372240:CDS 45.0%
ACCGGGATGATAAGAAACGA+AGG + tig0019271:170014-170033 Msa1372240:CDS 45.0%
GCCTTCGTTTCTTATCATCC+CGG - tig0019271:170018-170037 None:intergenic 45.0%
GGGATGATAAGAAACGAAGG+CGG + tig0019271:170017-170036 Msa1372240:CDS 45.0%
TGATAAGAAACGAAGGCGGA+AGG + tig0019271:170021-170040 Msa1372240:CDS 45.0%
GATAAGAAACGAAGGCGGAA+GGG + tig0019271:170022-170041 Msa1372240:CDS 45.0%
AGAAAAGAGATGGACGGTCA+AGG + tig0019271:170050-170069 Msa1372240:CDS 45.0%
ACGGTCAAGGAGTGGTAAAA+AGG + tig0019271:170063-170082 Msa1372240:CDS 45.0%
TCTTCTTCAGATGGCAGTGA+TGG + tig0019271:170109-170128 Msa1372240:CDS 45.0%
AGATGGCAGTGATGGTTCTT+TGG + tig0019271:170117-170136 Msa1372240:CDS 45.0%
GATGGCAGTGATGGTTCTTT+GGG + tig0019271:170118-170137 Msa1372240:CDS 45.0%
AGCGGAGAGAACAAGATCAA+AGG + tig0019271:170181-170200 Msa1372240:CDS 45.0%
! GCCAGCTGTTTCAGAAACAA+AGG + tig0019271:170270-170289 Msa1372240:CDS 45.0%
AAAGGAGATATTGCCAGAGG+AGG + tig0019271:170288-170307 Msa1372240:CDS 45.0%
CTAAGACATACCTCCTCAAC+CGG - tig0019271:170316-170335 None:intergenic 45.0%
TTTGAACAGCTGAGGGGAAA+TGG - tig0019271:170348-170367 None:intergenic 45.0%
GCTAGACATTTGAACAGCTG+AGG - tig0019271:170356-170375 None:intergenic 45.0%
CGACACCAACAGATTATGAC+GGG - tig0019271:170440-170459 None:intergenic 45.0%
ATGCTAACAAGTGCCCTTTG+TGG + tig0019271:170665-170684 Msa1372240:intron 45.0%
! GGCACTTGCTAAGAAGTCAA+AGG - tig0019271:170788-170807 None:intergenic 45.0%
ACTTCTTAGCAAGTGCCCTT+AGG + tig0019271:170791-170810 Msa1372240:intron 45.0%
CTTCTTAGCAAGTGCCCTTA+GGG + tig0019271:170792-170811 Msa1372240:intron 45.0%
AATGCTAACAGGTGCCCTAA+GGG - tig0019271:170809-170828 None:intergenic 45.0%
AAATGCTAACAGGTGCCCTA+AGG - tig0019271:170810-170829 None:intergenic 45.0%
AGCCCTTATCGTAGCAAAGA+TGG + tig0019271:171139-171158 Msa1372240:intron 45.0%
TGGAGGAGCTCTATTTAGGA+GGG + tig0019271:171208-171227 Msa1372240:intron 45.0%
!!! GGAAGGCGATGTTTTGGAAA+AGG + tig0019271:171264-171283 Msa1372240:intron 45.0%
! ATGGTGTTAAGATGGAAGGG+AGG - tig0019271:171397-171416 None:intergenic 45.0%
GAAAGCCGTATGCAACTTCT+AGG - tig0019271:171634-171653 None:intergenic 45.0%
! GACGCCTTTTCTCAATAGGT+GGG - tig0019271:172156-172175 None:intergenic 45.0%
! CACCTATTGAGAAAAGGCGT+CGG + tig0019271:172155-172174 Msa1372240:intron 45.0%
! AACCGACGCCTTTTCTCAAT+AGG - tig0019271:172160-172179 None:intergenic 45.0%
! TTGTTGTTGCATTGTCCTCC+TGG + tig0019271:172178-172197 Msa1372240:intron 45.0%
GAAGTTGTTGTCGAGTGACT+AGG - tig0019271:172324-172343 None:intergenic 45.0%
CTCATGCAGAAGAAAGCCAA+AGG - tig0019271:172561-172580 None:intergenic 45.0%
GAAGTGGTTACCCAGAAGAA+AGG + tig0019271:172938-172957 Msa1372240:CDS 45.0%
GAAAGGGATGGAGTTAACGT+TGG + tig0019271:172955-172974 Msa1372240:CDS 45.0%
TTCTATCGTCCTCCCTTGTT+GGG + tig0019271:172989-173008 Msa1372240:CDS 45.0%
AGGACAGAAGGATCTTTGCT+TGG + tig0019271:173164-173183 Msa1372240:intron 45.0%
GTGAGAGGACCATTAGCATT+TGG + tig0019271:173231-173250 Msa1372240:intron 45.0%
AAGGAGAGTAGTAACTCCGA+TGG + tig0019271:173935-173954 Msa1372240:CDS 45.0%
!! TAACTCCGATGGCTCTGTTT+TGG + tig0019271:173946-173965 Msa1372240:CDS 45.0%
TCTCCAGATGTAGACATACC+TGG + tig0019271:173992-174011 Msa1372240:CDS 45.0%
TCACCAGGTATGTCTACATC+TGG - tig0019271:173998-174017 None:intergenic 45.0%
GCCATGCAACTTCGTTTGAA+AGG + tig0019271:174070-174089 Msa1372240:CDS 45.0%
TGCATACTCTCCCGTCTTAT+GGG - tig0019271:174129-174148 None:intergenic 45.0%
ATGCATACTCTCCCGTCTTA+TGG - tig0019271:174130-174149 None:intergenic 45.0%
CCTGCCCACCAAAACAATAA+TGG - tig0019271:174278-174297 None:intergenic 45.0%
!!! CCATTATTGTTTTGGTGGGC+AGG + tig0019271:174275-174294 Msa1372240:intron 45.0%
TTCTGAGCAGAAGAAAGGAG+AGG + tig0019271:174702-174721 Msa1372240:CDS 45.0%
TGAATCAGCTACAAGAACGG+TGG + tig0019271:175529-175548 Msa1372240:CDS 45.0%
! GAACGGTGGATGATAATGTG+TGG + tig0019271:175543-175562 Msa1372240:CDS 45.0%
! ACGGTGGATGATAATGTGTG+GGG + tig0019271:175545-175564 Msa1372240:CDS 45.0%
!!! GTCAACTTTTTGGGGTGTCT+TGG + tig0019271:176333-176352 Msa1372240:intron 45.0%
ATGACCTAACTAGGAGACGA+TGG + tig0019271:176429-176448 Msa1372240:intron 45.0%
TGACCTAACTAGGAGACGAT+GGG + tig0019271:176430-176449 Msa1372240:intron 45.0%
! AGCAGGTATGCTTCACCTTT+TGG - tig0019271:176470-176489 None:intergenic 45.0%
GTACTCGGACTCAATGCATT+AGG + tig0019271:176569-176588 Msa1372240:intron 45.0%
!!! TTTTTTTTTGGGGGGTGGGA+TGG - tig0019271:176686-176705 None:intergenic 45.0%
GAACCTGCAGAATCTGAACA+GGG + tig0019271:177055-177074 Msa1372240:intron 45.0%
AGGAAAACAAGGTGGGTAGA+TGG - tig0019271:177107-177126 None:intergenic 45.0%
!!! CTACCCACCTTGTTTTCCTT+TGG + tig0019271:177108-177127 Msa1372240:intron 45.0%
GATCCCAAAGGAAAACAAGG+TGG - tig0019271:177115-177134 None:intergenic 45.0%
! TGAGTCTTTTGGCATTGTGC+TGG - tig0019271:177303-177322 None:intergenic 45.0%
! CATTAGAGGCATGCTGCATT+TGG + tig0019271:177462-177481 Msa1372240:CDS 45.0%
! ACGTCAAAGGTACGAGAAAG+TGG + tig0019271:177504-177523 Msa1372240:CDS 45.0%
! TCAAAGGTACGAGAAAGTGG+AGG + tig0019271:177507-177526 Msa1372240:CDS 45.0%
GTGGAGAAACTAGCATCTCT+TGG - tig0019271:177698-177717 None:intergenic 45.0%
! CCGGGCTTTATGAGAATCAT+AGG + tig0019271:177748-177767 Msa1372240:three_prime_UTR 45.0%
!!! TTTAAAATTTGTTTATTTTA+TGG + tig0019271:171566-171585 Msa1372240:intron 5.0%
!! AAACAAAATAAATAAATAAA+TGG - tig0019271:176087-176106 None:intergenic 5.0%
! AGGGGAAGAGGGAAGTTTTG+TGG - tig0019271:169074-169093 None:intergenic 50.0%
GCTGCGAAAGGAAAGAAGGA+AGG - tig0019271:169154-169173 None:intergenic 50.0%
!! GGTGTAGAATGGTAGTGGAG+TGG - tig0019271:169177-169196 None:intergenic 50.0%
!! GAGACCTTGCGTTTTCGAGA+CGG - tig0019271:169218-169237 None:intergenic 50.0%
GGTACTTCGTGGTCGTATGA+GGG - tig0019271:169277-169296 None:intergenic 50.0%
TGGTACTTCGTGGTCGTATG+AGG - tig0019271:169278-169297 None:intergenic 50.0%
GGCTGCAAATTGGTACTTCG+TGG - tig0019271:169288-169307 None:intergenic 50.0%
GAAATTCATTCCCCGTGACC+AGG + tig0019271:169692-169711 Msa1372240:CDS 50.0%
ACTCTACAAACCTGGTCACG+GGG - tig0019271:169705-169724 None:intergenic 50.0%
ATGGTTCTTTGGGTCGCCAA+CGG + tig0019271:170128-170147 Msa1372240:CDS 50.0%
GATATTGCCAGAGGAGGTTC+CGG + tig0019271:170294-170313 Msa1372240:CDS 50.0%
TCACACCCATCCACACTGTT+TGG - tig0019271:170908-170927 None:intergenic 50.0%
AACATGTGTGCCGAAAGACG+TGG + tig0019271:171188-171207 Msa1372240:intron 50.0%
TAGAGCTCCTCCACGTCTTT+CGG - tig0019271:171201-171220 None:intergenic 50.0%
GACGTGGAGGAGCTCTATTT+AGG + tig0019271:171204-171223 Msa1372240:intron 50.0%
GTGGAGGAGCTCTATTTAGG+AGG + tig0019271:171207-171226 Msa1372240:intron 50.0%
! CATCGCCTTCCACTGACTAT+TGG - tig0019271:171255-171274 None:intergenic 50.0%
! GTCAGTGGAAGGCGATGTTT+TGG + tig0019271:171258-171277 Msa1372240:intron 50.0%
! CGACGCCTTTTCTCAATAGG+TGG - tig0019271:172157-172176 None:intergenic 50.0%
CAACAACAGAAGGAGAGCCT+TGG - tig0019271:172357-172376 None:intergenic 50.0%
GGTTACCCAGAAGAAAGGGA+TGG + tig0019271:172943-172962 Msa1372240:CDS 50.0%
CTTCTATCGTCCTCCCTTGT+TGG + tig0019271:172988-173007 Msa1372240:CDS 50.0%
TCTATCGTCCTCCCTTGTTG+GGG + tig0019271:172990-173009 Msa1372240:CDS 50.0%
ACGTACAGGTTGTGGGAGAA+AGG + tig0019271:173427-173446 Msa1372240:intron 50.0%
TACAGGTTGTGGGAGAAAGG+TGG + tig0019271:173430-173449 Msa1372240:intron 50.0%
ACAGGTTGTGGGAGAAAGGT+GGG + tig0019271:173431-173450 Msa1372240:intron 50.0%
! TTCATTTCATGGTGCCGAGG+AGG - tig0019271:173770-173789 None:intergenic 50.0%
! GCTTTCATTTCATGGTGCCG+AGG - tig0019271:173773-173792 None:intergenic 50.0%
!! AAGCCAGTTTGCTGTAGCTG+AGG + tig0019271:173832-173851 Msa1372240:CDS 50.0%
!! AGCCAGTTTGCTGTAGCTGA+GGG + tig0019271:173833-173852 Msa1372240:CDS 50.0%
TGCAAACCAGTTGGCAGCTA+AGG + tig0019271:174048-174067 Msa1372240:CDS 50.0%
! ACAAGATGCATCGGCCGATT+TGG - tig0019271:174940-174959 None:intergenic 50.0%
TGCGTGTTCGGAAGTAACCT+TGG + tig0019271:175264-175283 Msa1372240:intron 50.0%
! AAGCCTTATCCCACCAAGTG+GGG - tig0019271:175345-175364 None:intergenic 50.0%
! CAAGCCTTATCCCACCAAGT+GGG - tig0019271:175346-175365 None:intergenic 50.0%
TCAGTGTTCCATGGGGAGTA+AGG + tig0019271:175898-175917 Msa1372240:intron 50.0%
CAGTGTTCCATGGGGAGTAA+GGG + tig0019271:175899-175918 Msa1372240:intron 50.0%
ATGGGGAGTAAGGGATCTGA+GGG + tig0019271:175908-175927 Msa1372240:intron 50.0%
GTAAGGGATCTGAGGGATGT+TGG + tig0019271:175915-175934 Msa1372240:intron 50.0%
ATCTGAGGGATGTTGGATCG+TGG + tig0019271:175922-175941 Msa1372240:intron 50.0%
CATTGAGTCCGAGTACTCCA+TGG - tig0019271:176565-176584 None:intergenic 50.0%
CTCGGACTCAATGCATTAGG+TGG + tig0019271:176572-176591 Msa1372240:intron 50.0%
!! GGATGATAGTGGCACGTGTT+AGG + tig0019271:176730-176749 Msa1372240:intron 50.0%
TCTGATGATTGCGCCACATG+TGG + tig0019271:177014-177033 Msa1372240:intron 50.0%
CGAACCTGCAGAATCTGAAC+AGG + tig0019271:177054-177073 Msa1372240:intron 50.0%
CAACCCTGTTCAGATTCTGC+AGG - tig0019271:177061-177080 None:intergenic 50.0%
CTACTGCCGGAGAATAGGGA+CGG - tig0019271:169115-169134 None:intergenic 55.0%
GAAGGAAGGAGAGGTTGTGG+CGG - tig0019271:169140-169159 None:intergenic 55.0%
! GTGGGCTGCGAAAGGAAAGA+AGG - tig0019271:169158-169177 None:intergenic 55.0%
CTCTCCGTCTCGAAAACGCA+AGG + tig0019271:169211-169230 Msa1372240:five_prime_UTR 55.0%
TGGCAGTTCACGCAACAGAG+TGG - tig0019271:169243-169262 None:intergenic 55.0%
ACTTCGTGGTCGTATGAGGG+CGG - tig0019271:169274-169293 None:intergenic 55.0%
ACGATTAGGACCCCGATTGC+AGG - tig0019271:169426-169445 None:intergenic 55.0%
AGAGATGGACGGTCAAGGAG+TGG + tig0019271:170055-170074 Msa1372240:CDS 55.0%
ATGTGTGCCGAAAGACGTGG+AGG + tig0019271:171191-171210 Msa1372240:intron 55.0%
TGCTCCTCCATCCCCAACAA+GGG - tig0019271:173004-173023 None:intergenic 55.0%
TTGCTCCTCCATCCCCAACA+AGG - tig0019271:173005-173024 None:intergenic 55.0%
TTGGGGATGGAGGAGCAAGT+TGG + tig0019271:173007-173026 Msa1372240:CDS 55.0%
CAAGAGCAAGCAGCTCGAGA+AGG + tig0019271:173054-173073 Msa1372240:CDS 55.0%
AGAAGGACGAAGCTGCCAAG+AGG + tig0019271:173071-173090 Msa1372240:CDS 55.0%
CAGGTTGTGGGAGAAAGGTG+GGG + tig0019271:173432-173451 Msa1372240:intron 55.0%
GGAGAAAGGTGGGGTTCTCT+TGG + tig0019271:173441-173460 Msa1372240:CDS 55.0%
CTAAAGCAGCTGCACCAGCT+CGG + tig0019271:173487-173506 Msa1372240:CDS 55.0%
TAAAGCAGCTGCACCAGCTC+GGG + tig0019271:173488-173507 Msa1372240:CDS 55.0%
CACCCTCAGCTACAGCAAAC+TGG - tig0019271:173838-173857 None:intergenic 55.0%
! TTGGTGGGCAGGAAGAAGCA+AGG + tig0019271:174286-174305 Msa1372240:intron 55.0%
! TGGTGGGCAGGAAGAAGCAA+GGG + tig0019271:174287-174306 Msa1372240:intron 55.0%
ACAGCAATGACCAGGCACCA+CGG - tig0019271:175010-175029 None:intergenic 55.0%
CTTATCCCACCAAGTGGGGT+CGG - tig0019271:175341-175360 None:intergenic 55.0%
! CCAAGCCTTATCCCACCAAG+TGG - tig0019271:175347-175366 None:intergenic 55.0%
! CCACTTGGTGGGATAAGGCT+TGG + tig0019271:175344-175363 Msa1372240:intron 55.0%
CTTGGTGGGATAAGGCTTGG+TGG + tig0019271:175347-175366 Msa1372240:intron 55.0%
! TGATGGGATTGGCGCAGCAA+CGG + tig0019271:175645-175664 Msa1372240:CDS 55.0%
CTCAGATCCCTTACTCCCCA+TGG - tig0019271:175909-175928 None:intergenic 55.0%
CATGGGGAGTAAGGGATCTG+AGG + tig0019271:175907-175926 Msa1372240:intron 55.0%
TGAGGGATGTTGGATCGTGG+TGG + tig0019271:175925-175944 Msa1372240:intron 55.0%
! GGATGTTGGATCGTGGTGGA+GGG + tig0019271:175929-175948 Msa1372240:intron 55.0%
! TTGGATCGTGGTGGAGGGTT+TGG + tig0019271:175934-175953 Msa1372240:intron 55.0%
! TGGATCGTGGTGGAGGGTTT+GGG + tig0019271:175935-175954 Msa1372240:intron 55.0%
TGGTGGAGGGTTTGGGGAAA+TGG + tig0019271:175942-175961 Msa1372240:intron 55.0%
TGGCCCATCGTCTCCTAGTT+AGG - tig0019271:176436-176455 None:intergenic 55.0%
AGGCATGCTGCATTTGGCTG+AGG + tig0019271:177468-177487 Msa1372240:CDS 55.0%
TTCCCTCTTCCCCTCCTACC+AGG + tig0019271:169080-169099 Msa1372240:five_prime_UTR 60.0%
AGCCTGGTAGGAGGGGAAGA+GGG - tig0019271:169085-169104 None:intergenic 60.0%
TGCCGGAGAATAGGGACGGT+GGG - tig0019271:169111-169130 None:intergenic 60.0%
GGCGCTACTGCCGGAGAATA+GGG - tig0019271:169119-169138 None:intergenic 60.0%
!! GTAGTGGAGTGGGCTGCGAA+AGG - tig0019271:169166-169185 None:intergenic 60.0%
TCCTCAACCGGAACCTCCTC+TGG - tig0019271:170304-170323 None:intergenic 60.0%
AGAGGAGGTTCCGGTTGAGG+AGG + tig0019271:170303-170322 Msa1372240:CDS 60.0%
TCGTCCTCCCTTGTTGGGGA+TGG + tig0019271:172994-173013 Msa1372240:CDS 60.0%
TCCTCCCTTGTTGGGGATGG+AGG + tig0019271:172997-173016 Msa1372240:CDS 60.0%
TCCTCCATCCCCAACAAGGG+AGG - tig0019271:173001-173020 None:intergenic 60.0%
GCATGTAGATGAGCCCGAGC+TGG - tig0019271:173504-173523 None:intergenic 60.0%
! GCATGGCCTTAGCTGCCAAC+TGG - tig0019271:174057-174076 None:intergenic 60.0%
CAGCAATGACCAGGCACCAC+GGG - tig0019271:175009-175028 None:intergenic 60.0%
TCCATGTAGCCGACCCCACT+TGG + tig0019271:175329-175348 Msa1372240:intron 60.0%
ACCAAGTGGGGTCGGCTACA+TGG - tig0019271:175333-175352 None:intergenic 60.0%
ATGTAGCCGACCCCACTTGG+TGG + tig0019271:175332-175351 Msa1372240:intron 60.0%
TGTAGCCGACCCCACTTGGT+GGG + tig0019271:175333-175352 Msa1372240:intron 60.0%
! CGACCCCACTTGGTGGGATA+AGG + tig0019271:175339-175358 Msa1372240:intron 60.0%
!! GCAGCAACGGAGGCATTGCA+TGG + tig0019271:175658-175677 Msa1372240:CDS 60.0%
GGGATGTTGGATCGTGGTGG+AGG + tig0019271:175928-175947 Msa1372240:intron 60.0%
! GGATCGTGGTGGAGGGTTTG+GGG + tig0019271:175936-175955 Msa1372240:intron 60.0%
CAGCCTGGTAGGAGGGGAAG+AGG - tig0019271:169086-169105 None:intergenic 65.0%
CCGGAGAATAGGGACGGTGG+GGG - tig0019271:169109-169128 None:intergenic 65.0%
CCCCCACCGTCCCTATTCTC+CGG + tig0019271:169106-169125 Msa1372240:five_prime_UTR 65.0%
GCCGGAGAATAGGGACGGTG+GGG - tig0019271:169110-169129 None:intergenic 65.0%
CTGCCGGAGAATAGGGACGG+TGG - tig0019271:169112-169131 None:intergenic 65.0%
CGGCGCTACTGCCGGAGAAT+AGG - tig0019271:169120-169139 None:intergenic 65.0%
! GTATGAGGGCGGAGGCGCAA+TGG - tig0019271:169263-169282 None:intergenic 65.0%
TCGTGGTCGTATGAGGGCGG+AGG - tig0019271:169271-169290 None:intergenic 65.0%
GCCAGAGGAGGTTCCGGTTG+AGG + tig0019271:170300-170319 Msa1372240:CDS 65.0%
! TGGGATTGGCGCAGCAACGG+AGG + tig0019271:175648-175667 Msa1372240:CDS 65.0%
TGGGGGCAGCCTGGTAGGAG+GGG - tig0019271:169092-169111 None:intergenic 70.0%
GTGGGGGCAGCCTGGTAGGA+GGG - tig0019271:169093-169112 None:intergenic 70.0%
GGTTGTGGCGGCGCTACTGC+CGG - tig0019271:169128-169147 None:intergenic 70.0%
GTTGCCACAGTGGCAGCCCG+TGG + tig0019271:174990-175009 Msa1372240:CDS 70.0%
GGTGGGGGCAGCCTGGTAGG+AGG - tig0019271:169094-169113 None:intergenic 75.0%
GACGGTGGGGGCAGCCTGGT+AGG - tig0019271:169097-169116 None:intergenic 75.0%
TAGGGACGGTGGGGGCAGCC+TGG - tig0019271:169101-169120 None:intergenic 75.0%
! GGCACCACGGGCTGCCACTG+TGG - tig0019271:174997-175016 None:intergenic 75.0%
CAGTGGCAGCCCGTGGTGCC+TGG + tig0019271:174997-175016 Msa1372240:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0019271 gene 169024 177890 169024 ID=Msa1372240;Name=Msa1372240
tig0019271 mRNA 169024 177890 169024 ID=Msa1372240-mRNA-1;Parent=Msa1372240;Name=Msa1372240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=338|1|1|1|0.88|0.8|10|281|762
tig0019271 exon 169024 169333 169024 ID=Msa1372240-mRNA-1:exon:2572;Parent=Msa1372240-mRNA-1
tig0019271 exon 169650 169713 169650 ID=Msa1372240-mRNA-1:exon:2573;Parent=Msa1372240-mRNA-1
tig0019271 exon 169818 170324 169818 ID=Msa1372240-mRNA-1:exon:2574;Parent=Msa1372240-mRNA-1
tig0019271 exon 172889 173092 172889 ID=Msa1372240-mRNA-1:exon:2575;Parent=Msa1372240-mRNA-1
tig0019271 exon 173435 173602 173435 ID=Msa1372240-mRNA-1:exon:2576;Parent=Msa1372240-mRNA-1
tig0019271 exon 173749 174120 173749 ID=Msa1372240-mRNA-1:exon:2577;Parent=Msa1372240-mRNA-1
tig0019271 exon 174297 174382 174297 ID=Msa1372240-mRNA-1:exon:2578;Parent=Msa1372240-mRNA-1
tig0019271 exon 174681 175044 174681 ID=Msa1372240-mRNA-1:exon:2579;Parent=Msa1372240-mRNA-1
tig0019271 exon 175527 175739 175527 ID=Msa1372240-mRNA-1:exon:2580;Parent=Msa1372240-mRNA-1
tig0019271 exon 177271 177890 177271 ID=Msa1372240-mRNA-1:exon:2581;Parent=Msa1372240-mRNA-1
tig0019271 five_prime_UTR 169024 169333 169024 ID=Msa1372240-mRNA-1:five_prime_utr;Parent=Msa1372240-mRNA-1
tig0019271 five_prime_UTR 169650 169677 169650 ID=Msa1372240-mRNA-1:five_prime_utr;Parent=Msa1372240-mRNA-1
tig0019271 CDS 169678 169713 169678 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 169818 170324 169818 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 172889 173092 172889 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 173435 173602 173435 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 173749 174120 173749 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 174297 174382 174297 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 174681 175044 174681 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 175527 175739 175527 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 CDS 177271 177609 177271 ID=Msa1372240-mRNA-1:cds;Parent=Msa1372240-mRNA-1
tig0019271 three_prime_UTR 177610 177890 177610 ID=Msa1372240-mRNA-1:three_prime_utr;Parent=Msa1372240-mRNA-1
Gene Sequence

>Msa1372240

ATGCTTTCTGGGGTGAAATTCATTCCCCGTGACCAGGTACAAGATGGGAACTTGGATAGGGATTCTGTCTCCAAAGAAAGAAAAAAATCAGATATTAGGAGGAAAAAGGATAAGAGGAATATATCTTCTTCTGATGATGATCAGCTTGATAAGATAAAAAAAGGGTCCAGAAAGAAGAAGTGGTATTCATCTGATGAAAATTCTTCGTTTTATACAACTGAAAGTGAAAGCGACCGGGATGATAAGAAACGAAGGCGGAAGGGAAAAAAGAAAAGAGATGGACGGTCAAGGAGTGGTAAAAAGGAATATACATCTGAGGAAGACTCTTCTTCTTCAGATGGCAGTGATGGTTCTTTGGGTCGCCAACGGAAACACCAAAAGTCATGTTCAAAAGATGGGAGCGGAGAGAACAAGATCAAAGGTGAAGCTACCGATATTGCAAGAAAAGAAATGGGATTGGATTGGATGCGTAAGTCTGAAAGTAAGAGGCCAGCTGTTTCAGAAACAAAGGAGATATTGCCAGAGGAGGTTCCGGTTGAGGAGTCAAAGAAGGCAAATCCTAAGGAATTGAATCCTTATCTAAAGGATGATGGAAGTGGTTACCCAGAAGAAAGGGATGGAGTTAACGTTGGTGCAAGCAAACTTCTATCGTCCTCCCTTGTTGGGGATGGAGGAGCAAGTTGGCGACTTAAAGCTTTAAAGCGTGCACAAGAGCAAGCAGCTCGAGAAGGACGAAGCTGCCAAGAGGTTGTGGGAGAAAGGTGGGGTTCTCTTGGTGAGTTGACTGCATCTGTTGCATCTAAAGCAGCTGCACCAGCTCGGGCTCATCTACATGCTATAAGAAGCAGACAAAGAGGGGTAACTGAAGAAAATTCACCAGATTCTGATAAGCCTATCCAACGGGATTCTAAAAGGGACTACATAAAAAATACTCCTCCTCGGCACCATGAAATGAAAGCACCTAAAGTGCAAGATTCATTATCTTGGAGAAAGCGCAAAAGCCAGTTTGCTGTAGCTGAGGGTGCTGAGATCATCGCTGCTGCAGCATCTAGCTTAAATAAATTTGCTAATGATGGAAGCTTTATGCGTGAGTTAGTTAGCAAGGAGAGTAGTAACTCCGATGGCTCTGTTTTGGAAAGTTTTGAAGCGGAAAAGGTTTCTCCAGATGTAGACATACCTGGTGAAAGAAAAGCAGTAGTACAGAATAACATGAGTGCAAACCAGTTGGCAGCTAAGGCCATGCAACTTCGTTTGAAAGGAAAAAATGAAGAAGCTGATAGACTAATGGAAGAAGCAAGGGTTTTGAACACAAAGCAGGGAAATGAAGATCATGAAATTAGATCAAGAACTGAGGGAAGTTCTAGTTCTAGAAGGTATGCTATGCAGAGGATATCTTCTGAGCAGAAGAAAGGAGAGGATGATGCTGATATGCATCTTGCTCGCAATATAATGCAGAACAAGCAGTTTAAGGTTTATACTCAGGCGGATGATGAATATGACTTTGAGACTGGTCCAAGCAAAAAGAGTAGAAAGAAGCAAGGAGGTGAAGACCCCAAGAATATCCAAAAAAAGATGAATGCAAATCGGTTCTTGACCCAGAAAGAACGTTGCCTCTTTTGTCTAGAAAATCCAAATCGGCCGATGCATCTTGTTGTGTCCATTGCAAATTTCACATATCTTATGTTGCCACAGTGGCAGCCCGTGGTGCCTGGTCATTGCTGTATTTTACCCATTCACCATGAATCAGCTACAAGAACGGTGGATGATAATGTGTGGGGAGAAATCCGAAATTTCAAAAAATGTCTTATTATGATGTTTGCAAAGCAAGATAAAGAAGTAGTGTTTCTTGAAACTGTGATGGGATTGGCGCAGCAACGGAGGCATTGCATGGTTGAGTGCATTCCTGTACCCAAAGATGTTGCTAAAGAGGCTCCTTTATACTTTAAGAAGGCAATTGATGAAGCAGAAGATGAGTGGAGCCAGCACAATGCCAAAAGACTCATTGATACGAGTCAGAAGGGTTTACGCAACTCAATTCCCAAGGACTTTCCTTATTTTCATGTAGAATTTGGTCTAAACAAAGGTTTTGTCCATGTTATTGATGATGAAAAGGAGTTTAAGAGTAGTCTTGGGTTGAATGTCATTAGAGGCATGCTGCATTTGGCTGAGGAAGACATGTATAGACGTCAAAGGTACGAGAAAGTGGAGGTGCAAAAGCAAGCTGTTGCTAGCTTTTCCAAAGACTGGGATCATTTTGACTGGACAAAGCAACTAAATGAAACATCGTAG

Protein sequence

>Msa1372240

MLSGVKFIPRDQVQDGNLDRDSVSKERKKSDIRRKKDKRNISSSDDDQLDKIKKGSRKKKWYSSDENSSFYTTESESDRDDKKRRRKGKKKRDGRSRSGKKEYTSEEDSSSSDGSDGSLGRQRKHQKSCSKDGSGENKIKGEATDIARKEMGLDWMRKSESKRPAVSETKEILPEEVPVEESKKANPKELNPYLKDDGSGYPEERDGVNVGASKLLSSSLVGDGGASWRLKALKRAQEQAAREGRSCQEVVGERWGSLGELTASVASKAAAPARAHLHAIRSRQRGVTEENSPDSDKPIQRDSKRDYIKNTPPRHHEMKAPKVQDSLSWRKRKSQFAVAEGAEIIAAAASSLNKFANDGSFMRELVSKESSNSDGSVLESFEAEKVSPDVDIPGERKAVVQNNMSANQLAAKAMQLRLKGKNEEADRLMEEARVLNTKQGNEDHEIRSRTEGSSSSRRYAMQRISSEQKKGEDDADMHLARNIMQNKQFKVYTQADDEYDFETGPSKKSRKKQGGEDPKNIQKKMNANRFLTQKERCLFCLENPNRPMHLVVSIANFTYLMLPQWQPVVPGHCCILPIHHESATRTVDDNVWGEIRNFKKCLIMMFAKQDKEVVFLETVMGLAQQRRHCMVECIPVPKDVAKEAPLYFKKAIDEAEDEWSQHNAKRLIDTSQKGLRNSIPKDFPYFHVEFGLNKGFVHVIDDEKEFKSSLGLNVIRGMLHLAEEDMYRRQRYEKVEVQKQAVASFSKDWDHFDWTKQLNETS*